AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0058610

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0058610 MtrunA17_Chr1g0146301 97.238 688 7 5 1 680 1 684 0.0 1381
Msa0058610 MtrunA17_Chr3g0140431 86.644 599 74 2 86 680 2 598 0.0 1105
Msa0058610 MtrunA17_Chr7g0214531 79.564 597 115 2 89 679 3 598 0.0 1028
Msa0058610 MtrunA17_Chr1g0213321 78.411 579 124 1 102 679 97 675 0.0 998
Msa0058610 MtrunA17_Chr7g0253211 75.212 589 141 1 96 679 296 884 0.0 961
Msa0058610 MtrunA17_Chr8g0340491 76.342 596 132 3 93 680 97 691 0.0 950
Msa0058610 MtrunA17_Chr4g0071031 38.828 273 156 5 124 393 9 273 5.28e-59 205
Msa0058610 MtrunA17_Chr2g0329981 38.828 273 156 5 124 393 9 273 6.53e-59 206
Msa0058610 MtrunA17_Chr2g0299661 38.462 273 157 5 124 393 9 273 1.37e-57 202
Msa0058610 MtrunA17_Chr8g0342821 37.828 267 154 6 124 387 9 266 3.29e-56 198
Msa0058610 MtrunA17_Chr7g0261501 38.095 273 158 5 124 393 9 273 4.01e-56 198
Msa0058610 MtrunA17_Chr1g0187571 38.710 279 158 6 118 393 6 274 6.04e-56 197
Msa0058610 MtrunA17_Chr1g0166821 37.634 279 161 6 118 393 6 274 8.24e-56 197
Msa0058610 MtrunA17_Chr1g0183631 37.634 279 161 6 118 393 5 273 2.43e-54 192
Msa0058610 MtrunA17_Chr6g0486611 37.363 273 160 5 124 393 9 273 4.75e-54 191
Msa0058610 MtrunA17_Chr1g0146151 37.456 283 163 7 114 393 2 273 6.55e-54 191
Msa0058610 MtrunA17_Chr8g0390211 37.276 279 162 6 118 393 5 273 1.79e-53 189
Msa0058610 MtrunA17_Chr3g0140071 36.201 279 165 6 118 393 5 273 1.20e-52 187
Msa0058610 MtrunA17_Chr1g0167261 37.102 283 163 6 116 393 4 276 1.31e-52 185
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0058610 AT2G25760.1 75.613 693 133 9 3 680 2 673 0.0 1086
Msa0058610 AT2G25760.2 75.000 696 135 10 3 680 2 676 0.0 1076
Msa0058610 AT3G13670.1 76.246 602 129 3 89 680 106 703 0.0 991
Msa0058610 AT3G03940.1 67.003 694 206 5 6 679 10 700 0.0 971
Msa0058610 AT5G18190.2 72.517 604 159 2 81 679 89 690 0.0 954
Msa0058610 AT5G18190.1 72.517 604 159 2 81 679 89 690 0.0 954
Msa0058610 AT3G03930.1 71.250 240 69 0 440 679 48 287 2.45e-123 368
Msa0058610 AT2G19470.1 38.828 273 156 5 124 393 9 273 2.83e-58 203
Msa0058610 AT5G57015.1 38.095 273 158 5 124 393 9 273 6.94e-58 202
Msa0058610 AT4G26100.1 38.095 273 158 5 124 393 9 273 7.38e-58 202
Msa0058610 AT3G23340.1 38.710 279 158 6 118 393 5 273 7.72e-58 202
Msa0058610 AT1G03930.1 37.993 279 160 6 118 393 5 273 6.10e-57 201
Msa0058610 AT4G14340.2 38.710 279 158 6 118 393 11 279 6.78e-57 197
Msa0058610 AT4G14340.1 38.710 279 158 6 118 393 11 279 9.23e-57 200
Msa0058610 AT1G72710.1 38.462 273 156 6 124 393 9 272 3.82e-56 198
Msa0058610 AT5G44100.1 36.918 279 163 6 118 393 5 273 1.24e-55 197
Msa0058610 AT5G44100.2 36.918 279 163 6 118 393 5 273 1.24e-55 197
Msa0058610 AT4G28540.1 37.276 279 162 6 118 393 9 277 1.81e-55 197
Msa0058610 AT5G43320.1 37.276 279 162 6 118 393 5 273 5.87e-54 192
Msa0058610 AT4G28880.3 37.276 279 162 6 118 393 5 273 7.95e-54 191
Msa0058610 AT4G28880.2 37.276 279 162 6 118 393 5 273 7.95e-54 191
Msa0058610 AT4G28880.1 37.276 279 162 6 118 393 5 273 7.95e-54 191
Msa0058610 AT4G28880.4 37.276 279 162 6 118 393 5 273 7.95e-54 191
Msa0058610 AT4G28860.2 37.276 279 162 6 118 393 5 273 2.02e-53 188
Msa0058610 AT4G28860.1 37.276 279 162 6 118 393 5 273 2.76e-53 189
Msa0058610 AT5G43320.2 37.276 279 162 6 118 393 5 273 2.80e-53 187
Msa0058610 AT5G43320.3 37.276 279 162 6 118 393 5 273 2.80e-53 187
Msa0058610 AT1G04440.1 36.559 279 164 6 118 393 5 273 7.63e-53 189
Msa0058610 AT3G23340.2 38.314 261 150 5 136 393 7 259 3.16e-51 184
Msa0058610 AT4G08800.1 33.333 273 139 6 124 393 9 241 1.09e-41 153

Find 211 sgRNAs with CRISPR-Local

Find 402 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGAGCACCGTCAGTGTTTA+TGG 0.167427 1_2:+15088693 None:intergenic
CCCATTCTGACTTTCTTCTT+TGG 0.171287 1_2:+15088518 None:intergenic
CTCACGTGCCGGAACAAATT+AGG 0.172612 1_2:-15091566 Msa0058610:CDS
ATATTCTTGGCCCTAGTTTA+TGG 0.174994 1_2:-15090097 Msa0058610:CDS
AGGAGGCATGTTAATCTTTA+AGG 0.188962 1_2:+15091785 None:intergenic
TAACCTTTGGGCACTGATTA+TGG 0.191586 1_2:-15088265 Msa0058610:CDS
ATCGAAAAGTGATATATATT+TGG 0.208565 1_2:+15088747 None:intergenic
CTCTTAAATCTGGCTAGTTT+TGG 0.219764 1_2:-15087137 Msa0058610:three_prime_UTR
AGAATGCATCTTCTCTAATA+TGG 0.254263 1_2:+15089894 None:intergenic
CTACCTCGTGTAGCGGGTTC+GGG 0.258671 1_2:+15091696 None:intergenic
ACCAGTAAAGGGTGTAATTA+TGG 0.259169 1_2:-15090396 Msa0058610:CDS
TTCTGATAAGCAAGAGATTA+TGG 0.259548 1_2:-15091541 Msa0058610:CDS
TAGGTTGTTGTTCTAACCTT+TGG 0.265781 1_2:-15088278 Msa0058610:CDS
TCCATAATTACACCCTTTAC+TGG 0.271957 1_2:+15090395 None:intergenic
TCGGGTTTAGCGATCGGGTT+CGG 0.281544 1_2:+15091714 None:intergenic
TGAAGTCTTTAAGCTACTTC+TGG 0.282427 1_2:-15086763 Msa0058610:three_prime_UTR
TCTTGTTTGCAAGAAGAAAA+TGG 0.283561 1_2:-15088869 Msa0058610:CDS
GCCCTAGTTTATGGGATGTT+TGG 0.283968 1_2:-15090088 Msa0058610:CDS
GAAGAAAACCTTTGCTTCAT+AGG 0.289095 1_2:+15088452 None:intergenic
TTGTTTGTATGTAGTGTATT+AGG 0.289760 1_2:-15090279 Msa0058610:intron
ATGGGTCTAATGTCTGGATT+TGG 0.294234 1_2:+15088712 None:intergenic
TTTCTGGTTGATCTTGGTTT+AGG 0.301281 1_2:-15089388 Msa0058610:intron
TCTACCTCGTGTAGCGGGTT+CGG 0.313908 1_2:+15091695 None:intergenic
TATTCTTGGCCCTAGTTTAT+GGG 0.314228 1_2:-15090096 Msa0058610:CDS
CGGGTTTAGCGATCGGGTTC+GGG 0.318336 1_2:+15091715 None:intergenic
TCACGTGCCGGAACAAATTA+GGG 0.325179 1_2:-15091565 Msa0058610:CDS
TGAGCACCGTCAGTGTTTAT+GGG 0.331178 1_2:+15088694 None:intergenic
GATATATATTTGGCATAATT+CGG 0.338639 1_2:+15088757 None:intergenic
AAGCTAGGGAAAGGAGGTTT+TGG 0.342457 1_2:-15091263 Msa0058610:CDS
ATCAACGTCCAGATGTATTT+AGG 0.344411 1_2:-15089211 Msa0058610:intron
TATAAGATTGCTGCAAGTAT+TGG 0.346054 1_2:+15087770 None:intergenic
ACACTAATCCATTGTGTTGC+TGG 0.346898 1_2:+15088491 None:intergenic
ACTCCATGAAACACTCTTCA+TGG 0.346925 1_2:-15091813 Msa0058610:five_prime_UTR
TTGCAGGTCATGGATATTCT+TGG 0.355219 1_2:-15090110 Msa0058610:intron
AGGTTGTTGTTCTAACCTTT+GGG 0.362175 1_2:-15088277 Msa0058610:CDS
AGGTTAGGTTTGTTTATTGA+TGG 0.362461 1_2:-15086880 Msa0058610:three_prime_UTR
TGGCCACTGCTGGAAGTAGA+TGG 0.368491 1_2:-15087678 Msa0058610:CDS
CTTTAGGATGTCTGCTGAAA+TGG 0.375494 1_2:-15089944 Msa0058610:intron
ATAAGATTGCTGCAAGTATT+GGG 0.378251 1_2:+15087771 None:intergenic
CATCATATGATTAGTGATTA+CGG 0.379624 1_2:+15087040 None:intergenic
TTCTTCGCGGACGGCTACCC+TGG 0.381224 1_2:-15089000 Msa0058610:CDS
TCAGAAACCCTAATTTGTTC+CGG 0.382437 1_2:+15091558 None:intergenic
ACACTGCTTTCTCTTAAATC+TGG 0.384194 1_2:-15087147 Msa0058610:three_prime_UTR
ATCACGTGCAGCGGCGGCGG+CGG 0.386563 1_2:+15091635 None:intergenic
AGTCTTGATAGAAAGTTTGT+AGG 0.387767 1_2:-15086940 Msa0058610:three_prime_UTR
GTGTTTATGGGTCTAATGTC+TGG 0.388332 1_2:+15088706 None:intergenic
ATAAATTACCTAAATACATC+TGG 0.391749 1_2:+15089203 None:intergenic
AGGTAGCAGAAGAGATGATT+TGG 0.392165 1_2:-15089050 Msa0058610:CDS
ATACTTGCAGCAATCTTATA+AGG 0.401113 1_2:-15087767 Msa0058610:CDS
TCAGCTGTGCATCTTGAACT+TGG 0.404866 1_2:-15086807 Msa0058610:three_prime_UTR
TAGCTGCAGGGTGAAAATAA+AGG 0.408921 1_2:-15088895 Msa0058610:intron
GGGAGAACCGCAGCTGATAA+AGG 0.410075 1_2:-15091495 Msa0058610:CDS
TTAAGCTACTTCTGGCCCCT+TGG 0.411235 1_2:-15086755 Msa0058610:three_prime_UTR
CGGGTTCGGGTTTAGCGATC+GGG 0.416775 1_2:+15091709 None:intergenic
GTTTATGTTGGTCGTCGTAT+TGG 0.427782 1_2:-15091236 Msa0058610:CDS
AAATGTGAAGGTATTTACTT+AGG 0.430671 1_2:-15086900 Msa0058610:three_prime_UTR
GTCTTGATAGAAAGTTTGTA+GGG 0.431009 1_2:-15086939 Msa0058610:three_prime_UTR
ATTGTTATGTCCCGTGGTGC+TGG 0.431009 1_2:-15087652 Msa0058610:CDS
CTGATTATGGATGCCGGCAC+TGG 0.434575 1_2:-15088252 Msa0058610:CDS
CTCCCTTCATCTTCAGCAAC+CGG 0.439789 1_2:+15091471 None:intergenic
TATATTGCATCTATTTGTTA+CGG 0.443891 1_2:-15087236 Msa0058610:CDS
TATGACCTGGTATCCTTGCC+AGG 0.447271 1_2:+15088982 None:intergenic
CGTCGTATTGGTGCCGGAGC+CGG 0.448238 1_2:-15091224 Msa0058610:CDS
GCTCCATGAAGAGTGTTTCA+TGG 0.448600 1_2:+15091810 None:intergenic
ACAAGGGACGGCAAGGTGAT+TGG 0.451632 1_2:-15090227 Msa0058610:CDS
CGGCGGCGATGGTGTTGTTA+CGG 0.451967 1_2:+15091652 None:intergenic
GCGGGTTCGGGTTTAGCGAT+CGG 0.452422 1_2:+15091708 None:intergenic
TGAAGGTATTTACTTAGGTT+AGG 0.453673 1_2:-15086895 Msa0058610:three_prime_UTR
TTGATCACGTGCAGCGGCGG+CGG 0.456771 1_2:+15091632 None:intergenic
GCCATAGCAGGATCTAATAG+TGG 0.459499 1_2:-15087981 Msa0058610:CDS
TTTGAGCATAAAACCAGTAA+AGG 0.460416 1_2:-15090408 Msa0058610:CDS
TTTACCTTGACATGAGTACT+AGG 0.461394 1_2:+15087353 None:intergenic
AGTAGCTTAAAGACTTCAAA+AGG 0.466019 1_2:+15086768 None:intergenic
GGGTTATTTATCAGTAGTGT+AGG 0.469943 1_2:-15088297 Msa0058610:CDS
AACTCAATAAACTGCCGAAA+AGG 0.471641 1_2:+15088808 None:intergenic
ATCGAAAAGGGATATGAAGA+TGG 0.473461 1_2:-15088318 Msa0058610:CDS
TCGGCAGTTTATTGAGTTCG+TGG 0.473854 1_2:-15088803 Msa0058610:CDS
TACAGAGTAGATAGAAAGCT+AGG 0.474012 1_2:-15091278 Msa0058610:CDS
CTCATCCTTCTTCCTTCACA+AGG 0.477955 1_2:-15088205 Msa0058610:intron
CTGAATCTCAGAAAGCTTCA+CGG 0.478991 1_2:+15087196 None:intergenic
CTCATCATCATCTCCTTCCA+TGG 0.479092 1_2:+15088544 None:intergenic
GTCACTGCTATGGCCACTGC+TGG 0.481033 1_2:-15087688 Msa0058610:CDS
GCCAAAGAAGAAAGTCAGAA+TGG 0.481635 1_2:-15088519 Msa0058610:CDS
AACAAATAGATGCAATATAG+AGG 0.484055 1_2:+15087240 None:intergenic
TTGAGCATAAAACCAGTAAA+GGG 0.485067 1_2:-15090407 Msa0058610:CDS
TGGACCTCCTTACGAGTGGC+AGG 0.485361 1_2:-15090376 Msa0058610:CDS
GTGAATCATTTCCATTCAAG+TGG 0.485946 1_2:-15087741 Msa0058610:CDS
AGGGTAGCCGTCCGCGAAGA+AGG 0.489461 1_2:+15089002 None:intergenic
AACAACCTTGTGAAGGAAGA+AGG 0.492459 1_2:+15088200 None:intergenic
GTTGTCCCAACACATCGAAA+AGG 0.495024 1_2:-15088331 Msa0058610:CDS
CAATGCAGAAGGGATTTGTT+CGG 0.497765 1_2:+15087087 None:intergenic
TACCTCAACAGCACCGGCTC+CGG 0.498945 1_2:+15091211 None:intergenic
GATGACTGTGATAGCGGCGG+TGG 0.500267 1_2:-15091516 Msa0058610:CDS
GGTCCGGTTGCTGAAGATGA+AGG 0.507097 1_2:-15091474 Msa0058610:CDS
TAGAACCGACGCAGATGGAG+AGG 0.508000 1_2:+15091902 None:intergenic
AGGAATGGATTATGGAACAG+TGG 0.508088 1_2:-15088025 Msa0058610:CDS
GCTAGTGTACATGCTCATCT+TGG 0.512428 1_2:-15089079 Msa0058610:CDS
GTGTAACAGGTTCAGGTGGG+TGG 0.514399 1_2:-15091311 Msa0058610:intron
TATTACATTAGTGCCATAGC+AGG 0.514536 1_2:-15087993 Msa0058610:CDS
GATAGAAAGCTAGGGAAAGG+AGG 0.516277 1_2:-15091269 Msa0058610:CDS
GTTGGTCGTCGTATTGGTGC+CGG 0.516374 1_2:-15091230 Msa0058610:CDS
ATCTGAAAATCCAGCACCAC+GGG 0.518126 1_2:+15087642 None:intergenic
TTCCAAACATCCCATAAACT+AGG 0.518224 1_2:+15090086 None:intergenic
GTTTCTTGAGTTTCATCAGT+CGG 0.518437 1_2:+15087395 None:intergenic
CCTCTTCTACCTCGTGTAGC+GGG 0.519563 1_2:+15091690 None:intergenic
CATGCTCATCTTGGTAGGAC+AGG 0.525496 1_2:-15089070 Msa0058610:CDS
CCAAAGAAGAAAGTCAGAAT+GGG 0.530872 1_2:-15088518 Msa0058610:CDS
AACCGCAGCTGATAAAGGTC+CGG 0.531660 1_2:-15091490 Msa0058610:CDS
GAGAATAGAACCGACGCAGA+TGG 0.533722 1_2:+15091897 None:intergenic
GAACAATAATTAAAATGTGA+AGG 0.536883 1_2:-15086912 Msa0058610:three_prime_UTR
ATAAACTGCCGAAAAGGTGC+GGG 0.538646 1_2:+15088814 None:intergenic
TTTGCCATGCAGCAACTCGT+TGG 0.539312 1_2:-15089268 Msa0058610:intron
TTGTCCCAACACATCGAAAA+GGG 0.539526 1_2:-15088330 Msa0058610:CDS
AAAACCTTTGCTTCATAGGT+CGG 0.541274 1_2:+15088456 None:intergenic
TTCACCCTCTCCATCTGCGT+CGG 0.541620 1_2:-15091907 Msa0058610:five_prime_UTR
AAAATGTCCAGTGGCCACAC+TGG 0.542344 1_2:+15086829 None:intergenic
CGCGGACGGCTACCCTGGCA+AGG 0.543822 1_2:-15088995 Msa0058610:CDS
TAAGTTTCCAGTGTGGCCAC+TGG 0.544452 1_2:-15086836 Msa0058610:three_prime_UTR
AAACACTGACGGTGCTCAGA+AGG 0.548675 1_2:-15088689 Msa0058610:intron
GATTTCTTGTATCCTAGTGA+AGG 0.549052 1_2:-15087512 Msa0058610:CDS
CTTAAAGACTTCAAAAGGAA+AGG 0.549419 1_2:+15086773 None:intergenic
CGTCCCTTGTAATGAACTCG+TGG 0.549783 1_2:+15090240 None:intergenic
GCTACCCTGGCAAGGATACC+AGG 0.551712 1_2:-15088987 Msa0058610:intron
GTGAAGGTATTCATCGAAGG+TGG 0.556433 1_2:-15087496 Msa0058610:CDS
AAACGAACAACCTCACGTGC+CGG 0.557745 1_2:-15091577 Msa0058610:CDS
GCATATCAGCAACATTGTAA+TGG 0.559923 1_2:+15088355 None:intergenic
CCCGCTACACGAGGTAGAAG+AGG 0.561644 1_2:-15091690 Msa0058610:CDS
TTTGTATGTAGTGTATTAGG+AGG 0.562063 1_2:-15090276 Msa0058610:intron
TCCAAACATCCCATAAACTA+GGG 0.562426 1_2:+15090087 None:intergenic
ACCTCTTCTACCTCGTGTAG+CGG 0.562642 1_2:+15091689 None:intergenic
GTAGATAGAAAGCTAGGGAA+AGG 0.563147 1_2:-15091272 Msa0058610:CDS
GGAATGGATTATGGAACAGT+GGG 0.563150 1_2:-15088024 Msa0058610:CDS
TGCCGGAGCCGGTGCTGTTG+AGG 0.563693 1_2:-15091213 Msa0058610:intron
TTGTAAACCTGCCACTCGTA+AGG 0.564528 1_2:+15090369 None:intergenic
CACGAGTTCATTACAAGGGA+CGG 0.566096 1_2:-15090239 Msa0058610:CDS
GCCGAAAAGGTGCGGGACAG+AGG 0.569844 1_2:+15088821 None:intergenic
TGGGCACTGATTATGGATGC+CGG 0.570860 1_2:-15088258 Msa0058610:CDS
ATCTAATAGTGGGAGCTCGT+TGG 0.570915 1_2:-15087970 Msa0058610:CDS
GGCCACTGCTGGAAGTAGAT+GGG 0.571298 1_2:-15087677 Msa0058610:CDS
CTTCGATGAATACCTTCACT+AGG 0.572280 1_2:+15087500 None:intergenic
AGGTCAAATTCAGAAATCCA+AGG 0.574073 1_2:+15086738 None:intergenic
TCAAAAGGAAAGGAGAAAAG+AGG 0.574251 1_2:+15086783 None:intergenic
AGAGGACGGTTGACCATGGA+AGG 0.574941 1_2:-15088557 Msa0058610:CDS
CTATCATACCTCAACAGCAC+CGG 0.575452 1_2:+15091205 None:intergenic
TATGCATACATCAATGCAGA+AGG 0.575574 1_2:+15087076 None:intergenic
CTAATTTGTTCCGGCACGTG+AGG 0.575786 1_2:+15091567 None:intergenic
TACTAAGAACAAGAGCAGCC+TGG 0.577119 1_2:+15087432 None:intergenic
TCGAAAAGGGATATGAAGAT+GGG 0.578550 1_2:-15088317 Msa0058610:CDS
CGTTGGCGTGATAATTCGAC+TGG 0.587524 1_2:-15089251 Msa0058610:CDS
GCAAGGTGATTGGTATGTCA+TGG 0.589006 1_2:-15090217 Msa0058610:intron
CGCGCCGACCTATGAAGCAA+AGG 0.589757 1_2:-15088460 Msa0058610:intron
AACTGCTGCTACATATGACC+AGG 0.592537 1_2:-15087450 Msa0058610:CDS
ACAGAGTAGATAGAAAGCTA+GGG 0.592579 1_2:-15091277 Msa0058610:CDS
CTGGAAGATTCGAACGACGA+CGG 0.594413 1_2:+15091843 None:intergenic
TACTTGATCACGTGCAGCGG+CGG 0.595072 1_2:+15091629 None:intergenic
AACCGGACCTTTATCAGCTG+CGG 0.595722 1_2:+15091488 None:intergenic
AATAAACTGCCGAAAAGGTG+CGG 0.597388 1_2:+15088813 None:intergenic
TGTATGCATAACTTATTATG+TGG 0.600627 1_2:-15087063 Msa0058610:three_prime_UTR
GTGTACATGCTCATCTTGGT+AGG 0.600986 1_2:-15089075 Msa0058610:CDS
GTCCGGTTGCTGAAGATGAA+GGG 0.607367 1_2:-15091473 Msa0058610:CDS
GGTCAAATTCAGAAATCCAA+GGG 0.607785 1_2:+15086739 None:intergenic
CTTTCCTAGTACTCATGTCA+AGG 0.608784 1_2:-15087357 Msa0058610:intron
TTGTGCAGTGAAACCAGTGC+CGG 0.610323 1_2:+15088239 None:intergenic
TGCCCATCTACTTCCAGCAG+TGG 0.611695 1_2:+15087675 None:intergenic
CCATAGCAGGATCTAATAGT+GGG 0.612424 1_2:-15087980 Msa0058610:CDS
CCCACTATTAGATCCTGCTA+TGG 0.617210 1_2:+15087980 None:intergenic
TTTCTGGTTCGAAGTTGAGG+AGG 0.618261 1_2:+15091768 None:intergenic
TCTCTTCATGAGTTCCCGGA+GGG 0.618779 1_2:+15089419 None:intergenic
GTTCATTACAAGGGACGGCA+AGG 0.622003 1_2:-15090234 Msa0058610:CDS
TATCAGGTTGGACAGAAGAG+AGG 0.622077 1_2:-15088575 Msa0058610:intron
GAAGAGAGGACGGTTGACCA+TGG 0.624209 1_2:-15088561 Msa0058610:CDS
TTGTACTTGATCACGTGCAG+CGG 0.625961 1_2:+15091626 None:intergenic
TGAAGGTATTCATCGAAGGT+GGG 0.628022 1_2:-15087495 Msa0058610:CDS
TCGTTGGTTGTAATGTCGAA+AGG 0.629923 1_2:-15087954 Msa0058610:intron
TTCTCTTCATGAGTTCCCGG+AGG 0.630312 1_2:+15089418 None:intergenic
TGGGAATGCCAGCAACACAA+TGG 0.633757 1_2:-15088499 Msa0058610:CDS
CTAGTGAAGGTATTCATCGA+AGG 0.635960 1_2:-15087499 Msa0058610:CDS
TAGAGAAGATGCATTCTAGA+GGG 0.637214 1_2:-15089888 Msa0058610:intron
CTTTCTATCAAGACTCACCC+AGG 0.639397 1_2:+15086948 None:intergenic
TTTGTGTAACAGGTTCAGGT+GGG 0.639842 1_2:-15091314 Msa0058610:intron
AGAACCGACGCAGATGGAGA+GGG 0.642887 1_2:+15091903 None:intergenic
ATGACCTGGTATCCTTGCCA+GGG 0.644585 1_2:+15088983 None:intergenic
TTAGAGAAGATGCATTCTAG+AGG 0.645638 1_2:-15089889 Msa0058610:CDS
ATTCATCGAAGGTGGGACAA+TGG 0.646078 1_2:-15087488 Msa0058610:CDS
TGGGCAATTGTTATGTCCCG+TGG 0.648130 1_2:-15087658 Msa0058610:CDS
TTTCTATCTACTCTGTACAT+CGG 0.650362 1_2:+15091284 None:intergenic
TCTTGATAGAAAGTTTGTAG+GGG 0.651158 1_2:-15086938 Msa0058610:three_prime_UTR
TGTCCCACGAGTTCATTACA+AGG 0.652591 1_2:-15090244 Msa0058610:CDS
AATGAACTCGTGGGACACCA+TGG 0.653940 1_2:+15090250 None:intergenic
TAAACCTGCCACTCGTAAGG+AGG 0.654486 1_2:+15090372 None:intergenic
GTTCGGCAAACTTGTCAGAG+AGG 0.655364 1_2:+15087104 None:intergenic
CATCCATAATCAGTGCCCAA+AGG 0.657903 1_2:+15088262 None:intergenic
ATGCATACATCAATGCAGAA+GGG 0.661234 1_2:+15087077 None:intergenic
ATGACTGTGATAGCGGCGGT+GGG 0.665147 1_2:-15091515 Msa0058610:CDS
GGTGTCGTGTATAGCAATCG+AGG 0.667047 1_2:-15089923 Msa0058610:CDS
AGTGTATTAGGAGGTAGCCA+TGG 0.671950 1_2:-15090267 Msa0058610:CDS
GATCTGAAAATCCAGCACCA+CGG 0.671996 1_2:+15087641 None:intergenic
ATTTGTTTCAGATACGTGCA+TGG 0.673109 1_2:-15089472 Msa0058610:intron
GTCCCTTGTAATGAACTCGT+GGG 0.673497 1_2:+15090241 None:intergenic
ATTACAATGTTGCTGATATG+CGG 0.677018 1_2:-15088353 Msa0058610:CDS
ATGGATGATGACTGTGATAG+CGG 0.678914 1_2:-15091522 Msa0058610:CDS
AGGTTGGACAGAAGAGAGGA+CGG 0.682501 1_2:-15088571 Msa0058610:CDS
ATTAGACCCATAAACACTGA+CGG 0.692330 1_2:-15088700 Msa0058610:CDS
GTCCCACGAGTTCATTACAA+GGG 0.693718 1_2:-15090243 Msa0058610:CDS
TAGCAGCAGTTGAAGTAATG+CGG 0.693804 1_2:+15087462 None:intergenic
ATTATGGACCTCCTTACGAG+TGG 0.700752 1_2:-15090380 Msa0058610:CDS
GCACAGCTGAAAATGTCCAG+TGG 0.709666 1_2:+15086820 None:intergenic
GTCAAATTCAGAAATCCAAG+GGG 0.718588 1_2:+15086740 None:intergenic
AAACCCGAACCCGCTACACG+AGG 0.720713 1_2:-15091699 Msa0058610:CDS
GATGATGACTGTGATAGCGG+CGG 0.731600 1_2:-15091519 Msa0058610:CDS
GCTACTATAAGTTTCCAGTG+TGG 0.756031 1_2:-15086843 Msa0058610:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAATTTGATTTTTTTTCAT+TGG - chr1_2:15086693-15086712 Msa0058610:three_prime_UTR 10.0%
!!! ATAAAAAAAATTACTTTTTC+AGG + chr1_2:15087208-15087227 None:intergenic 10.0%
!!! TTTTAAAATTTTTGTGTAAC+AGG - chr1_2:15087316-15087335 Msa0058610:intron 15.0%
!!! AAGATTTTATTTTTTTATCG+AGG - chr1_2:15088459-15088478 Msa0058610:intron 15.0%
!!! AGATTTTATTTTTTTATCGA+GGG - chr1_2:15088460-15088479 Msa0058610:intron 15.0%
!!! TTCAATTTTATTTTTTAACC+TGG - chr1_2:15088500-15088519 Msa0058610:CDS 15.0%
!! TTATTTGCATTTCTAATTTA+CGG - chr1_2:15089456-15089475 Msa0058610:CDS 15.0%
!!! ATAACTACTTTTGTTTTTAT+AGG - chr1_2:15090595-15090614 Msa0058610:intron 15.0%
!! ATTAATAAAAAATGGAAAGA+AGG - chr1_2:15090922-15090941 Msa0058610:intron 15.0%
!!! TTTTGCATTTTATAATCTCA+TGG + chr1_2:15086670-15086689 None:intergenic 20.0%
!!! AAAATTACTTTTTCAGGAAT+AGG + chr1_2:15087202-15087221 None:intergenic 20.0%
!!! TATCAATTTTTTTATCTGCA+TGG - chr1_2:15087246-15087265 Msa0058610:CDS 20.0%
!! AAAAATTCACCATATAAGTA+CGG - chr1_2:15087631-15087650 Msa0058610:intron 20.0%
!!! TCAATTATTCATTTTTACGT+CGG + chr1_2:15087700-15087719 None:intergenic 20.0%
!! AATAAAAACATCAATCAATG+TGG + chr1_2:15087831-15087850 None:intergenic 20.0%
!! TGTAGGAATATTATAAAAAC+TGG - chr1_2:15087904-15087923 Msa0058610:intron 20.0%
!!! ATAATTTTAGCAACATACAA+TGG + chr1_2:15088336-15088355 None:intergenic 20.0%
!!! TAACTGTATTTTCTATTTTG+TGG - chr1_2:15088673-15088692 Msa0058610:intron 20.0%
!!! CTTTCTTGCATTTTTTTTTT+GGG - chr1_2:15088934-15088953 Msa0058610:intron 20.0%
!!! TTTCTTGCATTTTTTTTTTG+GGG - chr1_2:15088935-15088954 Msa0058610:intron 20.0%
!! ATAAATTACCTAAATACATC+TGG + chr1_2:15089440-15089459 None:intergenic 20.0%
!! TATTAAAAACAAATATGACC+TGG + chr1_2:15089674-15089693 None:intergenic 20.0%
!!! AGCTAACAATTTTATTAGAA+CGG + chr1_2:15089730-15089749 None:intergenic 20.0%
!! GATATATATTTGGCATAATT+CGG + chr1_2:15089886-15089905 None:intergenic 20.0%
!! ATCGAAAAGTGATATATATT+TGG + chr1_2:15089896-15089915 None:intergenic 20.0%
!!! AAATATATATCACTTTTCGA+TGG - chr1_2:15089895-15089914 Msa0058610:CDS 20.0%
!!! TACTTTTGTTTTTATAGGAA+TGG - chr1_2:15090600-15090619 Msa0058610:intron 20.0%
!! GTAATTGACTATATTGTATT+AGG - chr1_2:15090756-15090775 Msa0058610:intron 20.0%
!!! TTAGGTTATTTTGCATATTT+TGG - chr1_2:15090774-15090793 Msa0058610:intron 20.0%
!!! TTTTTATTAATCCACTTGAA+TGG + chr1_2:15090913-15090932 None:intergenic 20.0%
!!! TCAAGTGGATTAATAAAAAA+TGG - chr1_2:15090914-15090933 Msa0058610:intron 20.0%
!!! TATATTGCATCTATTTGTTA+CGG - chr1_2:15091404-15091423 Msa0058610:intron 20.0%
!! GAACAATAATTAAAATGTGA+AGG - chr1_2:15091728-15091747 Msa0058610:CDS 20.0%
!!! ATTTGACCTTATTTTAAAGA+TGG - chr1_2:15091916-15091935 Msa0058610:five_prime_UTR 20.0%
!!! TGTTTTCCATCTTTAAAATA+AGG + chr1_2:15091925-15091944 None:intergenic 20.0%
!!! ATTTTAAAGATGGAAAACAA+TGG - chr1_2:15091926-15091945 Msa0058610:five_prime_UTR 20.0%
!!! ATGATAAAGTATTGTCTATG+TGG - chr1_2:15087508-15087527 Msa0058610:CDS 25.0%
!!! TGATAAAGTATTGTCTATGT+GGG - chr1_2:15087509-15087528 Msa0058610:CDS 25.0%
! TGATTGAAAATTGATGTCAA+TGG - chr1_2:15087726-15087745 Msa0058610:CDS 25.0%
! TTTCATTCATAATCAAAGTC+TGG - chr1_2:15087876-15087895 Msa0058610:intron 25.0%
! TTGTTTGTATGTAGTGTATT+AGG - chr1_2:15088361-15088380 Msa0058610:CDS 25.0%
!! ATTTTCTATTTTGTGGCTTT+AGG - chr1_2:15088680-15088699 Msa0058610:intron 25.0%
! AATAAATCAAAAACAGGATC+AGG + chr1_2:15088791-15088810 None:intergenic 25.0%
!!! TCCTGTTTTTGATTTATTTG+TGG - chr1_2:15088793-15088812 Msa0058610:CDS 25.0%
! TCCACAAATAAATCAAAAAC+AGG + chr1_2:15088797-15088816 None:intergenic 25.0%
!!! GCTTTCTTGCATTTTTTTTT+TGG - chr1_2:15088933-15088952 Msa0058610:intron 25.0%
!!! TTCTTGCATTTTTTTTTTGG+GGG - chr1_2:15088936-15088955 Msa0058610:intron 25.0%
! TCAACTCAACTTAAATTAGT+TGG - chr1_2:15089025-15089044 Msa0058610:CDS 25.0%
! CAACTCAACTTAAATTAGTT+GGG - chr1_2:15089026-15089045 Msa0058610:CDS 25.0%
! AACTCAACTTAAATTAGTTG+GGG - chr1_2:15089027-15089046 Msa0058610:CDS 25.0%
!!! GTGATTTGCATTTTCTTTTT+CGG + chr1_2:15089086-15089105 None:intergenic 25.0%
! TAATAAAATTGTTAGCTGCA+GGG - chr1_2:15089733-15089752 Msa0058610:intron 25.0%
!!! GTTTTTTATTCTTTTTGTCC+AGG - chr1_2:15090260-15090279 Msa0058610:CDS 25.0%
! AAAAAATAACAACCTTGTGA+AGG + chr1_2:15090450-15090469 None:intergenic 25.0%
! TAATGTATTCTTCACTGTAT+TGG - chr1_2:15090546-15090565 Msa0058610:intron 25.0%
!!! GTTTTTATAGGAATGGATTA+TGG - chr1_2:15090607-15090626 Msa0058610:intron 25.0%
!!! TCTCTTCTAAAATTAATTCC+AGG - chr1_2:15091094-15091113 Msa0058610:intron 25.0%
! TTCATGATTAAAGAAGACTA+TGG + chr1_2:15091336-15091355 None:intergenic 25.0%
!!! ATGTTTGATGTTATTTTTGC+AGG - chr1_2:15091361-15091380 Msa0058610:intron 25.0%
!!! TGTTATTTTTGCAGGAAAAA+TGG - chr1_2:15091369-15091388 Msa0058610:intron 25.0%
!!! GTTATTTTTGCAGGAAAAAT+GGG - chr1_2:15091370-15091389 Msa0058610:intron 25.0%
! AACAAATAGATGCAATATAG+AGG + chr1_2:15091403-15091422 None:intergenic 25.0%
! TGTATGCATAACTTATTATG+TGG - chr1_2:15091577-15091596 Msa0058610:CDS 25.0%
! CATCATATGATTAGTGATTA+CGG + chr1_2:15091603-15091622 None:intergenic 25.0%
!!! AAATGTGAAGGTATTTACTT+AGG - chr1_2:15091740-15091759 Msa0058610:CDS 25.0%
!!! CGGGTTATTTTTAGTTTTTC+TGG + chr1_2:15086891-15086910 None:intergenic 30.0%
TTCTGATAAGCAAGAGATTA+TGG - chr1_2:15087099-15087118 Msa0058610:three_prime_UTR 30.0%
!!! ATTACTTTTTCAGGAATAGG+CGG + chr1_2:15087199-15087218 None:intergenic 30.0%
! AATTTTTGTGTAACAGGTTC+AGG - chr1_2:15087322-15087341 Msa0058610:intron 30.0%
TTTCTATCTACTCTGTACAT+CGG + chr1_2:15087359-15087378 None:intergenic 30.0%
! TTGATGTCAGTGTTATTGAT+TGG - chr1_2:15087591-15087610 Msa0058610:intron 30.0%
!! TCATTTTTACGTCGGATATT+AGG + chr1_2:15087692-15087711 None:intergenic 30.0%
ACAACATCATACTTATATGG+CGG + chr1_2:15087785-15087804 None:intergenic 30.0%
ACCACAACATCATACTTATA+TGG + chr1_2:15087788-15087807 None:intergenic 30.0%
GTAAATAAAAGAGAGATCAC+TGG - chr1_2:15088101-15088120 Msa0058610:intron 30.0%
!!! ACTGGTGCATTCTTTTTTAA+TGG - chr1_2:15088119-15088138 Msa0058610:intron 30.0%
!!! CTGGTGCATTCTTTTTTAAT+GGG - chr1_2:15088120-15088139 Msa0058610:intron 30.0%
!!! TGGTGCATTCTTTTTTAATG+GGG - chr1_2:15088121-15088140 Msa0058610:intron 30.0%
! TTGTGCAATGAATAATTTGC+AGG - chr1_2:15088198-15088217 Msa0058610:intron 30.0%
TTTGAGCATAAAACCAGTAA+AGG - chr1_2:15088232-15088251 Msa0058610:CDS 30.0%
TTGAGCATAAAACCAGTAAA+GGG - chr1_2:15088233-15088252 Msa0058610:CDS 30.0%
TTTGTATGTAGTGTATTAGG+AGG - chr1_2:15088364-15088383 Msa0058610:intron 30.0%
!!! TATTTTTTTATCGAGGGCTA+TGG - chr1_2:15088466-15088485 Msa0058610:CDS 30.0%
!!! ATTTTTTTATCGAGGGCTAT+GGG - chr1_2:15088467-15088486 Msa0058610:CDS 30.0%
TTAACCTGGAATTATATTGC+AGG - chr1_2:15088514-15088533 Msa0058610:CDS 30.0%
! TGTGTCTTGATTTTTACTGT+TGG - chr1_2:15088632-15088651 Msa0058610:intron 30.0%
AGAATGCATCTTCTCTAATA+TGG + chr1_2:15088749-15088768 None:intergenic 30.0%
! AAGCTTTTTGTGTCCTTATT+AGG - chr1_2:15089002-15089021 Msa0058610:CDS 30.0%
!! TAAGTTGAGTTGACCTAATA+AGG + chr1_2:15089018-15089037 None:intergenic 30.0%
!! TGAAGAGAAAAAGCTTTTTC+TGG - chr1_2:15089236-15089255 Msa0058610:CDS 30.0%
! GAATTTTCTGATCAAAATCC+AGG - chr1_2:15089480-15089499 Msa0058610:intron 30.0%
CTAATAAAATTGTTAGCTGC+AGG - chr1_2:15089732-15089751 Msa0058610:intron 30.0%
! TCTTGTTTGCAAGAAGAAAA+TGG - chr1_2:15089771-15089790 Msa0058610:intron 30.0%
AGATTACTGTTTACAGATGA+GGG - chr1_2:15089996-15090015 Msa0058610:intron 30.0%
TGCTGTTAAGCTTATTTATC+AGG - chr1_2:15090049-15090068 Msa0058610:intron 30.0%
GTTAAGCTTATTTATCAGGT+TGG - chr1_2:15090053-15090072 Msa0058610:intron 30.0%
TGAAGTTAAATGAGTCTGTA+TGG - chr1_2:15090211-15090230 Msa0058610:intron 30.0%
!! GTCTCTGATCATTTTAACAT+TGG + chr1_2:15090237-15090256 None:intergenic 30.0%
ATTACAATGTTGCTGATATG+CGG - chr1_2:15090287-15090306 Msa0058610:intron 30.0%
ATAAGATTGCTGCAAGTATT+GGG + chr1_2:15090872-15090891 None:intergenic 30.0%
TATAAGATTGCTGCAAGTAT+TGG + chr1_2:15090873-15090892 None:intergenic 30.0%
ATACTTGCAGCAATCTTATA+AGG - chr1_2:15090873-15090892 Msa0058610:intron 30.0%
AGAAGAGAAAACATCACATA+TGG + chr1_2:15091082-15091101 None:intergenic 30.0%
CTAAAATTAATTCCAGGTTG+TGG - chr1_2:15091100-15091119 Msa0058610:intron 30.0%
!!! TAGATCATTTTTTGTCAACC+TGG - chr1_2:15091674-15091693 Msa0058610:CDS 30.0%
!!! AGATCATTTTTTGTCAACCT+GGG - chr1_2:15091675-15091694 Msa0058610:CDS 30.0%
AGTCTTGATAGAAAGTTTGT+AGG - chr1_2:15091700-15091719 Msa0058610:CDS 30.0%
GTCTTGATAGAAAGTTTGTA+GGG - chr1_2:15091701-15091720 Msa0058610:CDS 30.0%
TCTTGATAGAAAGTTTGTAG+GGG - chr1_2:15091702-15091721 Msa0058610:CDS 30.0%
!! TGAAGGTATTTACTTAGGTT+AGG - chr1_2:15091745-15091764 Msa0058610:CDS 30.0%
! AGGTTAGGTTTGTTTATTGA+TGG - chr1_2:15091760-15091779 Msa0058610:CDS 30.0%
CTTAAAGACTTCAAAAGGAA+AGG + chr1_2:15091870-15091889 None:intergenic 30.0%
AGTAGCTTAAAGACTTCAAA+AGG + chr1_2:15091875-15091894 None:intergenic 30.0%
!!! GTTTCATGGAGTTTTGTTTC+TGG + chr1_2:15086819-15086838 None:intergenic 35.0%
! AGGAGGCATGTTAATCTTTA+AGG + chr1_2:15086858-15086877 None:intergenic 35.0%
!! TCAGAAACCCTAATTTGTTC+CGG + chr1_2:15087085-15087104 None:intergenic 35.0%
TACAGAGTAGATAGAAAGCT+AGG - chr1_2:15087362-15087381 Msa0058610:CDS 35.0%
ACAGAGTAGATAGAAAGCTA+GGG - chr1_2:15087363-15087382 Msa0058610:CDS 35.0%
!!! GGTTTTGGACAAGTTTATGT+TGG - chr1_2:15087392-15087411 Msa0058610:CDS 35.0%
! TCAGTGTTATTGATTGGAGT+TGG - chr1_2:15087597-15087616 Msa0058610:intron 35.0%
ATCTGTATCACATTCACCAT+AGG + chr1_2:15087665-15087684 None:intergenic 35.0%
! ATTGATGTCAATGGTAACGA+TGG - chr1_2:15087735-15087754 Msa0058610:CDS 35.0%
GCCATATAAGTATGATGTTG+TGG - chr1_2:15087784-15087803 Msa0058610:intron 35.0%
ATCAAAGTCTGGATACATGT+AGG - chr1_2:15087887-15087906 Msa0058610:intron 35.0%
TGGAGAACTAGCATTATATG+TGG - chr1_2:15087924-15087943 Msa0058610:intron 35.0%
TGCAAGGAGACAAACTAATA+CGG + chr1_2:15087975-15087994 None:intergenic 35.0%
TGTTATTACCAACTCTCATG+TGG + chr1_2:15088002-15088021 None:intergenic 35.0%
!!! CAATCAATGCTTGCTTTTTG+AGG + chr1_2:15088044-15088063 None:intergenic 35.0%
ACTGCAAATTACACACACTA+AGG + chr1_2:15088162-15088181 None:intergenic 35.0%
! TTAGTGTGTGTAATTTGCAG+TGG - chr1_2:15088161-15088180 Msa0058610:intron 35.0%
! TGCAATGAATAATTTGCAGG+TGG - chr1_2:15088201-15088220 Msa0058610:intron 35.0%
! ACCAGTAAAGGGTGTAATTA+TGG - chr1_2:15088244-15088263 Msa0058610:CDS 35.0%
TCCATAATTACACCCTTTAC+TGG + chr1_2:15088248-15088267 None:intergenic 35.0%
ATGACCTGCAATATAATTCC+AGG + chr1_2:15088521-15088540 None:intergenic 35.0%
TGGAATTATATTGCAGGTCA+TGG - chr1_2:15088520-15088539 Msa0058610:CDS 35.0%
ATATTCTTGGCCCTAGTTTA+TGG - chr1_2:15088543-15088562 Msa0058610:CDS 35.0%
TATTCTTGGCCCTAGTTTAT+GGG - chr1_2:15088544-15088563 Msa0058610:CDS 35.0%
TCCAAACATCCCATAAACTA+GGG + chr1_2:15088556-15088575 None:intergenic 35.0%
TTCCAAACATCCCATAAACT+AGG + chr1_2:15088557-15088576 None:intergenic 35.0%
TTAGAGAAGATGCATTCTAG+AGG - chr1_2:15088751-15088770 Msa0058610:CDS 35.0%
TAGAGAAGATGCATTCTAGA+GGG - chr1_2:15088752-15088771 Msa0058610:CDS 35.0%
! GTGGATTTTTCATTACTGCA+CGG - chr1_2:15088812-15088831 Msa0058610:CDS 35.0%
! TTTTTCATTACTGCACGGAT+TGG - chr1_2:15088817-15088836 Msa0058610:CDS 35.0%
!!! TTGCATTTTTTTTTTGGGGG+TGG - chr1_2:15088939-15088958 Msa0058610:intron 35.0%
!!! TGCATTTTTTTTTTGGGGGT+GGG - chr1_2:15088940-15088959 Msa0058610:intron 35.0%
AATCTAGGTACACACACTAT+GGG + chr1_2:15088982-15089001 None:intergenic 35.0%
TAATCTAGGTACACACACTA+TGG + chr1_2:15088983-15089002 None:intergenic 35.0%
GGACACAAAAAGCTTAATCT+AGG + chr1_2:15088997-15089016 None:intergenic 35.0%
AAATTAGTTGGGGTCTAATG+TGG - chr1_2:15089037-15089056 Msa0058610:CDS 35.0%
ATTTGTTTCAGATACGTGCA+TGG - chr1_2:15089168-15089187 Msa0058610:intron 35.0%
! AAACCTGAGAACTTTTTGCT+TGG - chr1_2:15089198-15089217 Msa0058610:intron 35.0%
! TTTTTCTCTTCATGAGTTCC+CGG + chr1_2:15089228-15089247 None:intergenic 35.0%
!!! AAGCTTTTTCTGGTTGATCT+TGG - chr1_2:15089246-15089265 Msa0058610:CDS 35.0%
!! TTTCTGGTTGATCTTGGTTT+AGG - chr1_2:15089252-15089271 Msa0058610:CDS 35.0%
ATCAACGTCCAGATGTATTT+AGG - chr1_2:15089429-15089448 Msa0058610:CDS 35.0%
ATTGCCATATTCTTGCAACA+GGG - chr1_2:15089524-15089543 Msa0058610:intron 35.0%
! ACACTAATTTTCCTTCTTCG+CGG - chr1_2:15089627-15089646 Msa0058610:intron 35.0%
! CAGAGGATACACATATTTTC+TGG + chr1_2:15089805-15089824 None:intergenic 35.0%
AACTCAATAAACTGCCGAAA+AGG + chr1_2:15089835-15089854 None:intergenic 35.0%
!! TCACTTTTCGATGGAATTGT+TGG - chr1_2:15089904-15089923 Msa0058610:CDS 35.0%
ATTAGACCCATAAACACTGA+CGG - chr1_2:15089940-15089959 Msa0058610:CDS 35.0%
GAGATTACTGTTTACAGATG+AGG - chr1_2:15089995-15090014 Msa0058610:intron 35.0%
!!! AGTCTTGTTGCTAATTTTCC+TGG - chr1_2:15090022-15090041 Msa0058610:intron 35.0%
CCAAAGAAGAAAGTCAGAAT+GGG - chr1_2:15090122-15090141 Msa0058610:intron 35.0%
AAAACCTTTGCTTCATAGGT+CGG + chr1_2:15090187-15090206 None:intergenic 35.0%
GAAGAAAACCTTTGCTTCAT+AGG + chr1_2:15090191-15090210 None:intergenic 35.0%
GCATATCAGCAACATTGTAA+TGG + chr1_2:15090288-15090307 None:intergenic 35.0%
! ATATCCCTTTTCGATGTGTT+GGG + chr1_2:15090317-15090336 None:intergenic 35.0%
ATCGAAAAGGGATATGAAGA+TGG - chr1_2:15090322-15090341 Msa0058610:intron 35.0%
TCGAAAAGGGATATGAAGAT+GGG - chr1_2:15090323-15090342 Msa0058610:intron 35.0%
GGGTTATTTATCAGTAGTGT+AGG - chr1_2:15090343-15090362 Msa0058610:intron 35.0%
! TAGGTTGTTGTTCTAACCTT+TGG - chr1_2:15090362-15090381 Msa0058610:intron 35.0%
! AGGTTGTTGTTCTAACCTTT+GGG - chr1_2:15090363-15090382 Msa0058610:intron 35.0%
TTCTTCACTGTATTGGAACT+TGG - chr1_2:15090553-15090572 Msa0058610:intron 35.0%
TCGTTAAAGCTCTATTCTTC+AGG - chr1_2:15090713-15090732 Msa0058610:intron 35.0%
! TCTTCAGGCATTTGGTATTT+TGG - chr1_2:15090728-15090747 Msa0058610:intron 35.0%
GTGAATCATTTCCATTCAAG+TGG - chr1_2:15090899-15090918 Msa0058610:intron 35.0%
GATTTCTTGTATCCTAGTGA+AGG - chr1_2:15091128-15091147 Msa0058610:intron 35.0%
GTTTCTTGAGTTTCATCAGT+CGG + chr1_2:15091248-15091267 None:intergenic 35.0%
TTTACCTTGACATGAGTACT+AGG + chr1_2:15091290-15091309 None:intergenic 35.0%
ACACTGCTTTCTCTTAAATC+TGG - chr1_2:15091493-15091512 Msa0058610:CDS 35.0%
!!! CTCTTAAATCTGGCTAGTTT+TGG - chr1_2:15091503-15091522 Msa0058610:CDS 35.0%
ATGCATACATCAATGCAGAA+GGG + chr1_2:15091566-15091585 None:intergenic 35.0%
TATGCATACATCAATGCAGA+AGG + chr1_2:15091567-15091586 None:intergenic 35.0%
TCAAAAGGAAAGGAGAAAAG+AGG + chr1_2:15091860-15091879 None:intergenic 35.0%
TGAAGTCTTTAAGCTACTTC+TGG - chr1_2:15091877-15091896 Msa0058610:five_prime_UTR 35.0%
GTCAAATTCAGAAATCCAAG+GGG + chr1_2:15091903-15091922 None:intergenic 35.0%
GGTCAAATTCAGAAATCCAA+GGG + chr1_2:15091904-15091923 None:intergenic 35.0%
AGGTCAAATTCAGAAATCCA+AGG + chr1_2:15091905-15091924 None:intergenic 35.0%
ACTCCATGAAACACTCTTCA+TGG - chr1_2:15086827-15086846 Msa0058610:three_prime_UTR 40.0%
!!! GTTTTTCTGGTTCGAAGTTG+AGG + chr1_2:15086878-15086897 None:intergenic 40.0%
!!! TTCGGGTTTTGATTCGGATT+CGG + chr1_2:15086911-15086930 None:intergenic 40.0%
!!! GTGTTGTTACGGTTTTTAGC+AGG + chr1_2:15086980-15086999 None:intergenic 40.0%
ATGGATGATGACTGTGATAG+CGG - chr1_2:15087118-15087137 Msa0058610:three_prime_UTR 40.0%
! TTTTGTGTAACAGGTTCAGG+TGG - chr1_2:15087325-15087344 Msa0058610:intron 40.0%
TTTGTGTAACAGGTTCAGGT+GGG - chr1_2:15087326-15087345 Msa0058610:intron 40.0%
GTAGATAGAAAGCTAGGGAA+AGG - chr1_2:15087368-15087387 Msa0058610:CDS 40.0%
GTTTATGTTGGTCGTCGTAT+TGG - chr1_2:15087404-15087423 Msa0058610:CDS 40.0%
! GTGTTATTGATTGGAGTTGG+CGG - chr1_2:15087600-15087619 Msa0058610:intron 40.0%
! TGTTATTGATTGGAGTTGGC+GGG - chr1_2:15087601-15087620 Msa0058610:intron 40.0%
! ACCATATAAGTACGGTGTTG+TGG - chr1_2:15087639-15087658 Msa0058610:CDS 40.0%
! TCAATGGTAACGATGGTAGA+TGG - chr1_2:15087742-15087761 Msa0058610:CDS 40.0%
!! GCTCAAGCTTTAAGCAAAAG+CGG + chr1_2:15087950-15087969 None:intergenic 40.0%
TTGCAGGTCATGGATATTCT+TGG - chr1_2:15088530-15088549 Msa0058610:CDS 40.0%
!! CTTTAGGATGTCTGCTGAAA+TGG - chr1_2:15088696-15088715 Msa0058610:CDS 40.0%
GTTAAACTGTGAAAGCCACA+AGG + chr1_2:15088911-15088930 None:intergenic 40.0%
TGTGGCTTTCACAGTTTAAC+AGG - chr1_2:15088911-15088930 Msa0058610:intron 40.0%
!!! GCATTTTTTTTTTGGGGGTG+GGG - chr1_2:15088941-15088960 Msa0058610:intron 40.0%
!!! CATTTTTTTTTTGGGGGTGG+GGG - chr1_2:15088942-15088961 Msa0058610:intron 40.0%
!!! ATTTTTTTTTTGGGGGTGGG+GGG - chr1_2:15088943-15088962 Msa0058610:intron 40.0%
!!! CTTTTTCGGTTTTAGACCCA+CGG + chr1_2:15089072-15089091 None:intergenic 40.0%
TCTACCTTGCCAAGAAAAGT+TGG - chr1_2:15089282-15089301 Msa0058610:intron 40.0%
! GTGTAAGCACCAACTTTTCT+TGG + chr1_2:15089294-15089313 None:intergenic 40.0%
TCTGATCAAAATCCAGGCTT+TGG - chr1_2:15089486-15089505 Msa0058610:intron 40.0%
CATCAAAATCAACCAAAGCC+TGG + chr1_2:15089501-15089520 None:intergenic 40.0%
GATTGCCATATTCTTGCAAC+AGG - chr1_2:15089523-15089542 Msa0058610:intron 40.0%
TTGCCATATTCTTGCAACAG+GGG - chr1_2:15089525-15089544 Msa0058610:intron 40.0%
AGGTAGCAGAAGAGATGATT+TGG - chr1_2:15089590-15089609 Msa0058610:intron 40.0%
! TAATTTTCCTTCTTCGCGGA+CGG - chr1_2:15089631-15089650 Msa0058610:intron 40.0%
TAGCTGCAGGGTGAAAATAA+AGG - chr1_2:15089745-15089764 Msa0058610:intron 40.0%
!! GATACACATATTTTCTGGCG+AGG + chr1_2:15089800-15089819 None:intergenic 40.0%
AATAAACTGCCGAAAAGGTG+CGG + chr1_2:15089830-15089849 None:intergenic 40.0%
ATGGGTCTAATGTCTGGATT+TGG + chr1_2:15089931-15089950 None:intergenic 40.0%
GTGTTTATGGGTCTAATGTC+TGG + chr1_2:15089937-15089956 None:intergenic 40.0%
TAAGCTTAACAGCACAAACC+AGG + chr1_2:15090043-15090062 None:intergenic 40.0%
GCCAAAGAAGAAAGTCAGAA+TGG - chr1_2:15090121-15090140 Msa0058610:intron 40.0%
CCCATTCTGACTTTCTTCTT+TGG + chr1_2:15090125-15090144 None:intergenic 40.0%
ACACTAATCCATTGTGTTGC+TGG + chr1_2:15090152-15090171 None:intergenic 40.0%
AGCAACATTGTAATGGTACC+TGG + chr1_2:15090281-15090300 None:intergenic 40.0%
TTGTCCCAACACATCGAAAA+GGG - chr1_2:15090310-15090329 Msa0058610:intron 40.0%
! CATATCCCTTTTCGATGTGT+TGG + chr1_2:15090318-15090337 None:intergenic 40.0%
!! TAACCTTTGGGCACTGATTA+TGG - chr1_2:15090375-15090394 Msa0058610:CDS 40.0%
AACAACCTTGTGAAGGAAGA+AGG + chr1_2:15090443-15090462 None:intergenic 40.0%
!! AGGAATGGATTATGGAACAG+TGG - chr1_2:15090615-15090634 Msa0058610:intron 40.0%
!! GGAATGGATTATGGAACAGT+GGG - chr1_2:15090616-15090635 Msa0058610:intron 40.0%
CCATAGCAGGATCTAATAGT+GGG - chr1_2:15090660-15090679 Msa0058610:intron 40.0%
! TCGTTGGTTGTAATGTCGAA+AGG - chr1_2:15090686-15090705 Msa0058610:intron 40.0%
AGCTCTATTCTTCAGGCATT+TGG - chr1_2:15090720-15090739 Msa0058610:intron 40.0%
ACTATGTCTCTCACTTCTAC+TGG - chr1_2:15090826-15090845 Msa0058610:intron 40.0%
! CACTTCTACTGGTGATTTGT+TGG - chr1_2:15090837-15090856 Msa0058610:intron 40.0%
!! ACTGGTGATTTGTTGGTTTC+AGG - chr1_2:15090844-15090863 Msa0058610:intron 40.0%
!! CTGGTGATTTGTTGGTTTCA+GGG - chr1_2:15090845-15090864 Msa0058610:intron 40.0%
! AGGATTTTTCGTCACTGCTA+TGG - chr1_2:15090942-15090961 Msa0058610:intron 40.0%
CTTCGATGAATACCTTCACT+AGG + chr1_2:15091143-15091162 None:intergenic 40.0%
!! CTAGTGAAGGTATTCATCGA+AGG - chr1_2:15091141-15091160 Msa0058610:intron 40.0%
!! TGAAGGTATTCATCGAAGGT+GGG - chr1_2:15091145-15091164 Msa0058610:intron 40.0%
TAGCAGCAGTTGAAGTAATG+CGG + chr1_2:15091181-15091200 None:intergenic 40.0%
!! TCATCAGTCGGTTTTCTTCT+TGG + chr1_2:15091236-15091255 None:intergenic 40.0%
CTTTCCTAGTACTCATGTCA+AGG - chr1_2:15091283-15091302 Msa0058610:CDS 40.0%
CTGAATCTCAGAAAGCTTCA+CGG + chr1_2:15091447-15091466 None:intergenic 40.0%
!!! AATCTGGCTAGTTTTGGAAC+TGG - chr1_2:15091509-15091528 Msa0058610:CDS 40.0%
! CAATGCAGAAGGGATTTGTT+CGG + chr1_2:15091556-15091575 None:intergenic 40.0%
GCTACTATAAGTTTCCAGTG+TGG - chr1_2:15091797-15091816 Msa0058610:five_prime_UTR 40.0%
!! GCTCCATGAAGAGTGTTTCA+TGG + chr1_2:15086833-15086852 None:intergenic 45.0%
!! TTTCTGGTTCGAAGTTGAGG+AGG + chr1_2:15086875-15086894 None:intergenic 45.0%
!!! TCGGGTTTTGATTCGGATTC+GGG + chr1_2:15086910-15086929 None:intergenic 45.0%
!!! ATCGGGTTCGGGTTTTGATT+CGG + chr1_2:15086917-15086936 None:intergenic 45.0%
TTGTACTTGATCACGTGCAG+CGG + chr1_2:15087017-15087036 None:intergenic 45.0%
TCACGTGCCGGAACAAATTA+GGG - chr1_2:15087075-15087094 Msa0058610:three_prime_UTR 45.0%
GATAGAAAGCTAGGGAAAGG+AGG - chr1_2:15087371-15087390 Msa0058610:CDS 45.0%
! AAGCTAGGGAAAGGAGGTTT+TGG - chr1_2:15087377-15087396 Msa0058610:CDS 45.0%
CTATCATACCTCAACAGCAC+CGG + chr1_2:15087438-15087457 None:intergenic 45.0%
GCCACAACACCGTACTTATA+TGG + chr1_2:15087643-15087662 None:intergenic 45.0%
! ATGGTAACGATGGTAGATGG+CGG - chr1_2:15087745-15087764 Msa0058610:CDS 45.0%
ACTCTCATGTGGAGTTTGCA+AGG + chr1_2:15087991-15088010 None:intergenic 45.0%
TGCAAACTCCACATGAGAGT+TGG - chr1_2:15087991-15088010 Msa0058610:CDS 45.0%
ATTATGGACCTCCTTACGAG+TGG - chr1_2:15088260-15088279 Msa0058610:CDS 45.0%
TTGTAAACCTGCCACTCGTA+AGG + chr1_2:15088274-15088293 None:intergenic 45.0%
AGTGTATTAGGAGGTAGCCA+TGG - chr1_2:15088373-15088392 Msa0058610:intron 45.0%
TGTCCCACGAGTTCATTACA+AGG - chr1_2:15088396-15088415 Msa0058610:intron 45.0%
GTCCCACGAGTTCATTACAA+GGG - chr1_2:15088397-15088416 Msa0058610:intron 45.0%
GTCCCTTGTAATGAACTCGT+GGG + chr1_2:15088402-15088421 None:intergenic 45.0%
CACGAGTTCATTACAAGGGA+CGG - chr1_2:15088401-15088420 Msa0058610:intron 45.0%
GCAAGGTGATTGGTATGTCA+TGG - chr1_2:15088423-15088442 Msa0058610:intron 45.0%
GCCCTAGTTTATGGGATGTT+TGG - chr1_2:15088552-15088571 Msa0058610:CDS 45.0%
CATGCTAAACCAGTCATGCT+AGG - chr1_2:15088850-15088869 Msa0058610:CDS 45.0%
!!! TTTTTTTTTTGGGGGTGGGG+GGG - chr1_2:15088944-15088963 Msa0058610:intron 45.0%
TTGGGGTCTAATGTGGCTTT+AGG - chr1_2:15089044-15089063 Msa0058610:CDS 45.0%
!! TAATGTGGCTTTAGGATCCG+TGG - chr1_2:15089052-15089071 Msa0058610:CDS 45.0%
!! AATGTGGCTTTAGGATCCGT+GGG - chr1_2:15089053-15089072 Msa0058610:CDS 45.0%
! AGCACCAACTTTTCTTGGCA+AGG + chr1_2:15089289-15089308 None:intergenic 45.0%
GTTCCCCTGTTGCAAGAATA+TGG + chr1_2:15089531-15089550 None:intergenic 45.0%
GCTAGTGTACATGCTCATCT+TGG - chr1_2:15089561-15089580 Msa0058610:intron 45.0%
GTGTACATGCTCATCTTGGT+AGG - chr1_2:15089565-15089584 Msa0058610:intron 45.0%
!! ACACATATTTTCTGGCGAGG+TGG + chr1_2:15089797-15089816 None:intergenic 45.0%
! ATAAACTGCCGAAAAGGTGC+GGG + chr1_2:15089829-15089848 None:intergenic 45.0%
TCGGCAGTTTATTGAGTTCG+TGG - chr1_2:15089837-15089856 Msa0058610:intron 45.0%
! TGAGCACCGTCAGTGTTTAT+GGG + chr1_2:15089949-15089968 None:intergenic 45.0%
!! TATCAGGTTGGACAGAAGAG+AGG - chr1_2:15090065-15090084 Msa0058610:intron 45.0%
CTCATCATCATCTCCTTCCA+TGG + chr1_2:15090099-15090118 None:intergenic 45.0%
GTTGTCCCAACACATCGAAA+AGG - chr1_2:15090309-15090328 Msa0058610:intron 45.0%
CATCCATAATCAGTGCCCAA+AGG + chr1_2:15090381-15090400 None:intergenic 45.0%
CTCATCCTTCTTCCTTCACA+AGG - chr1_2:15090435-15090454 Msa0058610:intron 45.0%
GCCATAGCAGGATCTAATAG+TGG - chr1_2:15090659-15090678 Msa0058610:intron 45.0%
CCCACTATTAGATCCTGCTA+TGG + chr1_2:15090663-15090682 None:intergenic 45.0%
! ATCTAATAGTGGGAGCTCGT+TGG - chr1_2:15090670-15090689 Msa0058610:intron 45.0%
AGTGAGAGACATAGTCACAC+AGG + chr1_2:15090821-15090840 None:intergenic 45.0%
ATCTGAAAATCCAGCACCAC+GGG + chr1_2:15091001-15091020 None:intergenic 45.0%
GATCTGAAAATCCAGCACCA+CGG + chr1_2:15091002-15091021 None:intergenic 45.0%
!! TGGTGCTGGATTTTCAGATC+AGG - chr1_2:15091002-15091021 Msa0058610:intron 45.0%
AGAAATCAAGCTCCACAACC+TGG + chr1_2:15091115-15091134 None:intergenic 45.0%
!! GTGAAGGTATTCATCGAAGG+TGG - chr1_2:15091144-15091163 Msa0058610:intron 45.0%
ATTCATCGAAGGTGGGACAA+TGG - chr1_2:15091152-15091171 Msa0058610:intron 45.0%
AACTGCTGCTACATATGACC+AGG - chr1_2:15091190-15091209 Msa0058610:intron 45.0%
TACTAAGAACAAGAGCAGCC+TGG + chr1_2:15091211-15091230 None:intergenic 45.0%
CTTTCTATCAAGACTCACCC+AGG + chr1_2:15091695-15091714 None:intergenic 45.0%
TCAGCTGTGCATCTTGAACT+TGG - chr1_2:15091833-15091852 Msa0058610:five_prime_UTR 45.0%
GAGAATAGAACCGACGCAGA+TGG + chr1_2:15086746-15086765 None:intergenic 50.0%
CTGGAAGATTCGAACGACGA+CGG + chr1_2:15086800-15086819 None:intergenic 50.0%
ACCTCTTCTACCTCGTGTAG+CGG + chr1_2:15086954-15086973 None:intergenic 50.0%
AAACGAACAACCTCACGTGC+CGG - chr1_2:15087063-15087082 Msa0058610:three_prime_UTR 50.0%
!! CTAATTTGTTCCGGCACGTG+AGG + chr1_2:15087076-15087095 None:intergenic 50.0%
CTCACGTGCCGGAACAAATT+AGG - chr1_2:15087074-15087093 Msa0058610:three_prime_UTR 50.0%
!! GATGATGACTGTGATAGCGG+CGG - chr1_2:15087121-15087140 Msa0058610:three_prime_UTR 50.0%
AACCGCAGCTGATAAAGGTC+CGG - chr1_2:15087150-15087169 Msa0058610:three_prime_UTR 50.0%
AACCGGACCTTTATCAGCTG+CGG + chr1_2:15087155-15087174 None:intergenic 50.0%
GTCCGGTTGCTGAAGATGAA+GGG - chr1_2:15087167-15087186 Msa0058610:three_prime_UTR 50.0%
CTCCCTTCATCTTCAGCAAC+CGG + chr1_2:15087172-15087191 None:intergenic 50.0%
!! AAGTACGGTGTTGTGGCCTA+TGG - chr1_2:15087646-15087665 Msa0058610:CDS 50.0%
! TGGTAACGATGGTAGATGGC+GGG - chr1_2:15087746-15087765 Msa0058610:CDS 50.0%
TAAACCTGCCACTCGTAAGG+AGG + chr1_2:15088271-15088290 None:intergenic 50.0%
GGCAGGTTTACAAGTGAGTG+TGG - chr1_2:15088281-15088300 Msa0058610:CDS 50.0%
AATGAACTCGTGGGACACCA+TGG + chr1_2:15088393-15088412 None:intergenic 50.0%
CGTCCCTTGTAATGAACTCG+TGG + chr1_2:15088403-15088422 None:intergenic 50.0%
GTTCATTACAAGGGACGGCA+AGG - chr1_2:15088406-15088425 Msa0058610:intron 50.0%
CGTAAGTTCATCTCTCGTGC+TGG - chr1_2:15088591-15088610 Msa0058610:intron 50.0%
! GGTGTCGTGTATAGCAATCG+AGG - chr1_2:15088717-15088736 Msa0058610:CDS 50.0%
!! CTGCACGGATTGGATATAGC+CGG - chr1_2:15088827-15088846 Msa0058610:CDS 50.0%
!! GCATGACTGGTTTAGCATGC+CGG + chr1_2:15088849-15088868 None:intergenic 50.0%
CCAAAGAAGCCTAGCATGAC+TGG + chr1_2:15088862-15088881 None:intergenic 50.0%
CCAGTCATGCTAGGCTTCTT+TGG - chr1_2:15088859-15088878 Msa0058610:CDS 50.0%
GGCAATTTCAGTTGCCAGAC+TGG - chr1_2:15088880-15088899 Msa0058610:CDS 50.0%
GGGCCAAGCAAAAAGTTCTC+AGG + chr1_2:15089204-15089223 None:intergenic 50.0%
! GAACTTTTTGCTTGGCCCTC+CGG - chr1_2:15089206-15089225 Msa0058610:intron 50.0%
! AACTTTTTGCTTGGCCCTCC+GGG - chr1_2:15089207-15089226 Msa0058610:intron 50.0%
TCTCTTCATGAGTTCCCGGA+GGG + chr1_2:15089224-15089243 None:intergenic 50.0%
TTCTCTTCATGAGTTCCCGG+AGG + chr1_2:15089225-15089244 None:intergenic 50.0%
TTTGCCATGCAGCAACTCGT+TGG - chr1_2:15089372-15089391 Msa0058610:intron 50.0%
CGTTGGCGTGATAATTCGAC+TGG - chr1_2:15089389-15089408 Msa0058610:CDS 50.0%
CATGCTCATCTTGGTAGGAC+AGG - chr1_2:15089570-15089589 Msa0058610:intron 50.0%
ATGACCTGGTATCCTTGCCA+GGG + chr1_2:15089660-15089679 None:intergenic 50.0%
TATGACCTGGTATCCTTGCC+AGG + chr1_2:15089661-15089680 None:intergenic 50.0%
! CTGAGCACCGTCAGTGTTTA+TGG + chr1_2:15089950-15089969 None:intergenic 50.0%
AAACACTGACGGTGCTCAGA+AGG - chr1_2:15089951-15089970 Msa0058610:intron 50.0%
AGGTTGGACAGAAGAGAGGA+CGG - chr1_2:15090069-15090088 Msa0058610:intron 50.0%
TGGGAATGCCAGCAACACAA+TGG - chr1_2:15090141-15090160 Msa0058610:intron 50.0%
!! TGGGCACTGATTATGGATGC+CGG - chr1_2:15090382-15090401 Msa0058610:CDS 50.0%
TTGTGCAGTGAAACCAGTGC+CGG + chr1_2:15090404-15090423 None:intergenic 50.0%
TGGGCAATTGTTATGTCCCG+TGG - chr1_2:15090982-15091001 Msa0058610:intron 50.0%
ATTGTTATGTCCCGTGGTGC+TGG - chr1_2:15090988-15091007 Msa0058610:intron 50.0%
GGACACAGCACAATCAACTG+CGG + chr1_2:15091315-15091334 None:intergenic 50.0%
GTTCGGCAAACTTGTCAGAG+AGG + chr1_2:15091539-15091558 None:intergenic 50.0%
TAAGTTTCCAGTGTGGCCAC+TGG - chr1_2:15091804-15091823 Msa0058610:five_prime_UTR 50.0%
AAAATGTCCAGTGGCCACAC+TGG + chr1_2:15091814-15091833 None:intergenic 50.0%
GCACAGCTGAAAATGTCCAG+TGG + chr1_2:15091823-15091842 None:intergenic 50.0%
TTAAGCTACTTCTGGCCCCT+TGG - chr1_2:15091885-15091904 Msa0058610:five_prime_UTR 50.0%
TTCACCCTCTCCATCTGCGT+CGG - chr1_2:15086733-15086752 Msa0058610:three_prime_UTR 55.0%
AGAACCGACGCAGATGGAGA+GGG + chr1_2:15086740-15086759 None:intergenic 55.0%
TAGAACCGACGCAGATGGAG+AGG + chr1_2:15086741-15086760 None:intergenic 55.0%
TCGGGTTTAGCGATCGGGTT+CGG + chr1_2:15086929-15086948 None:intergenic 55.0%
!! TCTACCTCGTGTAGCGGGTT+CGG + chr1_2:15086948-15086967 None:intergenic 55.0%
CCTCTTCTACCTCGTGTAGC+GGG + chr1_2:15086953-15086972 None:intergenic 55.0%
TACTTGATCACGTGCAGCGG+CGG + chr1_2:15087014-15087033 None:intergenic 55.0%
!! ATGACTGTGATAGCGGCGGT+GGG - chr1_2:15087125-15087144 Msa0058610:three_prime_UTR 55.0%
GGGAGAACCGCAGCTGATAA+AGG - chr1_2:15087145-15087164 Msa0058610:three_prime_UTR 55.0%
GGTCCGGTTGCTGAAGATGA+AGG - chr1_2:15087166-15087185 Msa0058610:three_prime_UTR 55.0%
GTGTAACAGGTTCAGGTGGG+TGG - chr1_2:15087329-15087348 Msa0058610:intron 55.0%
! GTTGGTCGTCGTATTGGTGC+CGG - chr1_2:15087410-15087429 Msa0058610:CDS 55.0%
ACAAGGGACGGCAAGGTGAT+TGG - chr1_2:15088413-15088432 Msa0058610:intron 55.0%
! TCCTCTGTCCCGCACCTTTT+CGG - chr1_2:15089818-15089837 Msa0058610:intron 55.0%
GAAGAGAGGACGGTTGACCA+TGG - chr1_2:15090079-15090098 Msa0058610:CDS 55.0%
AGAGGACGGTTGACCATGGA+AGG - chr1_2:15090083-15090102 Msa0058610:CDS 55.0%
CTGATTATGGATGCCGGCAC+TGG - chr1_2:15090388-15090407 Msa0058610:CDS 55.0%
TGGCCACTGCTGGAAGTAGA+TGG - chr1_2:15090962-15090981 Msa0058610:intron 55.0%
GGCCACTGCTGGAAGTAGAT+GGG - chr1_2:15090963-15090982 Msa0058610:intron 55.0%
TGCCCATCTACTTCCAGCAG+TGG + chr1_2:15090968-15090987 None:intergenic 55.0%
CGGGTTTAGCGATCGGGTTC+GGG + chr1_2:15086928-15086947 None:intergenic 60.0%
! CGGGTTCGGGTTTAGCGATC+GGG + chr1_2:15086934-15086953 None:intergenic 60.0%
! GCGGGTTCGGGTTTAGCGAT+CGG + chr1_2:15086935-15086954 None:intergenic 60.0%
AAACCCGAACCCGCTACACG+AGG - chr1_2:15086941-15086960 Msa0058610:three_prime_UTR 60.0%
!! CTACCTCGTGTAGCGGGTTC+GGG + chr1_2:15086947-15086966 None:intergenic 60.0%
CCCGCTACACGAGGTAGAAG+AGG - chr1_2:15086950-15086969 Msa0058610:three_prime_UTR 60.0%
!! CGGCGGCGATGGTGTTGTTA+CGG + chr1_2:15086991-15087010 None:intergenic 60.0%
!! GATGACTGTGATAGCGGCGG+TGG - chr1_2:15087124-15087143 Msa0058610:three_prime_UTR 60.0%
!! TACCTCAACAGCACCGGCTC+CGG + chr1_2:15087432-15087451 None:intergenic 60.0%
!! CGATGGTAGATGGCGGGTGA+TGG - chr1_2:15087752-15087771 Msa0058610:CDS 60.0%
TGGACCTCCTTACGAGTGGC+AGG - chr1_2:15088264-15088283 Msa0058610:CDS 60.0%
!! GCCAGACTGGTCTCACCTTG+TGG - chr1_2:15088893-15088912 Msa0058610:intron 60.0%
GCCACAAGGTGAGACCAGTC+TGG + chr1_2:15088897-15088916 None:intergenic 60.0%
CACGCCAACGAGTTGCTGCA+TGG + chr1_2:15089379-15089398 None:intergenic 60.0%
GCTACCCTGGCAAGGATACC+AGG - chr1_2:15089653-15089672 Msa0058610:intron 60.0%
! CGCGCCGACCTATGAAGCAA+AGG - chr1_2:15090180-15090199 Msa0058610:intron 60.0%
GTCACTGCTATGGCCACTGC+TGG - chr1_2:15090952-15090971 Msa0058610:intron 60.0%
TTGATCACGTGCAGCGGCGG+CGG + chr1_2:15087011-15087030 None:intergenic 65.0%
!! CGTCGTATTGGTGCCGGAGC+CGG - chr1_2:15087416-15087435 Msa0058610:CDS 65.0%
AGGGTAGCCGTCCGCGAAGA+AGG + chr1_2:15089641-15089660 None:intergenic 65.0%
TTCTTCGCGGACGGCTACCC+TGG - chr1_2:15089640-15089659 Msa0058610:intron 65.0%
! GCCGAAAAGGTGCGGGACAG+AGG + chr1_2:15089822-15089841 None:intergenic 65.0%
!! TGCCGGAGCCGGTGCTGTTG+AGG - chr1_2:15087427-15087446 Msa0058610:CDS 70.0%
ATCACGTGCAGCGGCGGCGG+CGG + chr1_2:15087008-15087027 None:intergenic 75.0%
CGCGGACGGCTACCCTGGCA+AGG - chr1_2:15089645-15089664 Msa0058610:intron 75.0%
! TGCAGCGGCGGCGGCGGCGA+TGG + chr1_2:15087002-15087021 None:intergenic 85.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 15086659 15092003 15086659 ID=Msa0058610;Name=Msa0058610
chr1_2 mRNA 15086659 15092003 15086659 ID=Msa0058610-mRNA-1;Parent=Msa0058610;Name=Msa0058610-mRNA-1;_AED=0.11;_eAED=0.11;_QI=210|0.93|0.93|1|1|1|16|561|680
chr1_2 exon 15086659 15087279 15086659 ID=Msa0058610-mRNA-1:exon:6147;Parent=Msa0058610-mRNA-1
chr1_2 exon 15087358 15087546 15087358 ID=Msa0058610-mRNA-1:exon:6146;Parent=Msa0058610-mRNA-1
chr1_2 exon 15087639 15087796 15087639 ID=Msa0058610-mRNA-1:exon:6145;Parent=Msa0058610-mRNA-1
chr1_2 exon 15087955 15088045 15087955 ID=Msa0058610-mRNA-1:exon:6144;Parent=Msa0058610-mRNA-1
chr1_2 exon 15088206 15088380 15088206 ID=Msa0058610-mRNA-1:exon:6143;Parent=Msa0058610-mRNA-1
chr1_2 exon 15088461 15088591 15088461 ID=Msa0058610-mRNA-1:exon:6142;Parent=Msa0058610-mRNA-1
chr1_2 exon 15088690 15088908 15088690 ID=Msa0058610-mRNA-1:exon:6141;Parent=Msa0058610-mRNA-1
chr1_2 exon 15088988 15089117 15088988 ID=Msa0058610-mRNA-1:exon:6140;Parent=Msa0058610-mRNA-1
chr1_2 exon 15089212 15089278 15089212 ID=Msa0058610-mRNA-1:exon:6139;Parent=Msa0058610-mRNA-1
chr1_2 exon 15089389 15089483 15089389 ID=Msa0058610-mRNA-1:exon:6138;Parent=Msa0058610-mRNA-1
chr1_2 exon 15089889 15089960 15089889 ID=Msa0058610-mRNA-1:exon:6137;Parent=Msa0058610-mRNA-1
chr1_2 exon 15090071 15090126 15090071 ID=Msa0058610-mRNA-1:exon:6136;Parent=Msa0058610-mRNA-1
chr1_2 exon 15090218 15090287 15090218 ID=Msa0058610-mRNA-1:exon:6135;Parent=Msa0058610-mRNA-1
chr1_2 exon 15090369 15090442 15090369 ID=Msa0058610-mRNA-1:exon:6134;Parent=Msa0058610-mRNA-1
chr1_2 exon 15091214 15091324 15091214 ID=Msa0058610-mRNA-1:exon:6133;Parent=Msa0058610-mRNA-1
chr1_2 exon 15091449 15092003 15091449 ID=Msa0058610-mRNA-1:exon:6132;Parent=Msa0058610-mRNA-1
chr1_2 five_prime_UTR 15091794 15092003 15091794 ID=Msa0058610-mRNA-1:five_prime_utr;Parent=Msa0058610-mRNA-1
chr1_2 CDS 15091449 15091793 15091449 ID=Msa0058610-mRNA-1:cds;Parent=Msa0058610-mRNA-1
chr1_2 CDS 15091214 15091324 15091214 ID=Msa0058610-mRNA-1:cds;Parent=Msa0058610-mRNA-1
chr1_2 CDS 15090369 15090442 15090369 ID=Msa0058610-mRNA-1:cds;Parent=Msa0058610-mRNA-1
chr1_2 CDS 15090218 15090287 15090218 ID=Msa0058610-mRNA-1:cds;Parent=Msa0058610-mRNA-1
chr1_2 CDS 15090071 15090126 15090071 ID=Msa0058610-mRNA-1:cds;Parent=Msa0058610-mRNA-1
chr1_2 CDS 15089889 15089960 15089889 ID=Msa0058610-mRNA-1:cds;Parent=Msa0058610-mRNA-1
chr1_2 CDS 15089389 15089483 15089389 ID=Msa0058610-mRNA-1:cds;Parent=Msa0058610-mRNA-1
chr1_2 CDS 15089212 15089278 15089212 ID=Msa0058610-mRNA-1:cds;Parent=Msa0058610-mRNA-1
chr1_2 CDS 15088988 15089117 15088988 ID=Msa0058610-mRNA-1:cds;Parent=Msa0058610-mRNA-1
chr1_2 CDS 15088690 15088908 15088690 ID=Msa0058610-mRNA-1:cds;Parent=Msa0058610-mRNA-1
chr1_2 CDS 15088461 15088591 15088461 ID=Msa0058610-mRNA-1:cds;Parent=Msa0058610-mRNA-1
chr1_2 CDS 15088206 15088380 15088206 ID=Msa0058610-mRNA-1:cds;Parent=Msa0058610-mRNA-1
chr1_2 CDS 15087955 15088045 15087955 ID=Msa0058610-mRNA-1:cds;Parent=Msa0058610-mRNA-1
chr1_2 CDS 15087639 15087796 15087639 ID=Msa0058610-mRNA-1:cds;Parent=Msa0058610-mRNA-1
chr1_2 CDS 15087358 15087546 15087358 ID=Msa0058610-mRNA-1:cds;Parent=Msa0058610-mRNA-1
chr1_2 CDS 15087220 15087279 15087220 ID=Msa0058610-mRNA-1:cds;Parent=Msa0058610-mRNA-1
chr1_2 three_prime_UTR 15086659 15087219 15086659 ID=Msa0058610-mRNA-1:three_prime_utr;Parent=Msa0058610-mRNA-1
Gene Sequence

>Msa0058610

ATGCCTCCTCAACTTCGAACCAGAAAAACTAAAAATAACCCGAATCCGAATCAAAACCCGAACCCGATCGCTAAACCCGAACCCGCTACACGAGGTAGAAGAGGTAGACCTGCTAAAAACCGTAACAACACCATCGCCGCCGCCGCCGCTGCACGTGATCAAGTACAAGAACAACAACAACAACAACAACAACAAAACGAACAACCTCACGTGCCGGAACAAATTAGGGTTTCTGATAAGCAAGAGATTATGGATGATGACTGTGATAGCGGCGGTGGGAGAACCGCAGCTGATAAAGGTCCGGTTGCTGAAGATGAAGGGAGTACACCGCCTATTCCTGAAAAAGTTCAGGTGGGTGGTTCACCGATGTACAGAGTAGATAGAAAGCTAGGGAAAGGAGGTTTTGGACAAGTTTATGTTGGTCGTCGTATTGGTGCCGGAGCCGGTGCTGTTGAGGTGGCTTTGAAATTTGAGCATAAAACCAGTAAAGGGTGTAATTATGGACCTCCTTACGAGTGGCAGGTTTACAATGTATTAGGAGGTAGCCATGGTGTCCCACGAGTTCATTACAAGGGACGGCAAGGTGATTGGTATGTCATGGTCATGGATATTCTTGGCCCTAGTTTATGGGATGTTTGGAATAACAAGACACACACGATGTCTGCTGAAATGGTGTCGTGTATAGCAATCGAGGCTGTTTCCATATTAGAGAAGATGCATTCTAGAGGATACGTGCATGGTGACGTAAAACCTGAGAACTTTTTGCTTGGCCCTCCGGGAACTCATGAAGAGAAAAAGCTTTTTCTGGTTGATCTTGGTTTAGCAACTCGTTGGCGTGATAATTCGACTGGTCTTCATGTTGATTACGATCAACGTCCAGATGTATTTAGGGGAACTGTTCGTTATGCTAGTGTACATGCTCATCTTGGTAGGACAGGTAGCAGAAGAGATGATTTGGAATCTCTTGCATACACACTAATTTTCCTTCTTCGCGGACGGCTACCCTGGCAAGGATACCAGGGTGAAAATAAAGGATTTCTTGTTTGCAAGAAGAAAATGGCCACCTCGCCAGAAAATATGTGTATCCTCTGTCCCGCACCTTTTCGGCAGTTTATTGAGTTCGTGGTGAATTTGAAGTTCGACGAAGAACCGAATTATGCCAAATATATATCACTTTTCGATGGAATTGTTGGTCCAAATCCAGACATTAGACCCATAAACACTGACGGTGCTCAGAAGGTTGGACAGAAGAGAGGACGGTTGACCATGGAAGGAGATGATGATGAGCAGCCAAAGAAGAAAGTCAGAATGGGAATGCCAGCAACACAATGGATTAGTGTGTACAATGCGCGCCGACCTATGAAGCAAAGGTACCATTACAATGTTGCTGATATGCGGTTGTCCCAACACATCGAAAAGGGATATGAAGATGGGTTATTTATCAGTAGTGTAGGTTGTTGTTCTAACCTTTGGGCACTGATTATGGATGCCGGCACTGGTTTCACTGCACAAGTTTATGAACTCTCATCCTTCTTCCTTCACAAGGAATGGATTATGGAACAGTGGGAAAAAAATTATTACATTAGTGCCATAGCAGGATCTAATAGTGGGAGCTCGTTGGTTGTAATGTCGAAAGGGACCCAATACTTGCAGCAATCTTATAAGGTCAGTGAATCATTTCCATTCAAGTGGATTAATAAAAAATGGAAAGAAGGATTTTTCGTCACTGCTATGGCCACTGCTGGAAGTAGATGGGCAATTGTTATGTCCCGTGGTGCTGGATTTTCAGATCAGGTTGTGGAGCTTGATTTCTTGTATCCTAGTGAAGGTATTCATCGAAGGTGGGACAATGGTTACCGCATTACTTCAACTGCTGCTACATATGACCAGGCTGCTCTTGTTCTTAGTATTCCAAGAAGAAAACCGACTGATGAAACTCAAGAAACACTTCGCACATCTGACTTTCCTAGTACTCATGTCAAGGAAAAATGGGCAAAGAACCTCTATATTGCATCTATTTGTTACGGAAGAACTGTTTCATGA
Protein sequence

>Msa0058610

MPPQLRTRKTKNNPNPNQNPNPIAKPEPATRGRRGRPAKNRNNTIAAAAAARDQVQEQQQQQQQQNEQPHVPEQIRVSDKQEIMDDDCDSGGGRTAADKGPVAEDEGSTPPIPEKVQVGGSPMYRVDRKLGKGGFGQVYVGRRIGAGAGAVEVALKFEHKTSKGCNYGPPYEWQVYNVLGGSHGVPRVHYKGRQGDWYVMVMDILGPSLWDVWNNKTHTMSAEMVSCIAIEAVSILEKMHSRGYVHGDVKPENFLLGPPGTHEEKKLFLVDLGLATRWRDNSTGLHVDYDQRPDVFRGTVRYASVHAHLGRTGSRRDDLESLAYTLIFLLRGRLPWQGYQGENKGFLVCKKKMATSPENMCILCPAPFRQFIEFVVNLKFDEEPNYAKYISLFDGIVGPNPDIRPINTDGAQKVGQKRGRLTMEGDDDEQPKKKVRMGMPATQWISVYNARRPMKQRYHYNVADMRLSQHIEKGYEDGLFISSVGCCSNLWALIMDAGTGFTAQVYELSSFFLHKEWIMEQWEKNYYISAIAGSNSGSSLVVMSKGTQYLQQSYKVSESFPFKWINKKWKEGFFVTAMATAGSRWAIVMSRGAGFSDQVVELDFLYPSEGIHRRWDNGYRITSTAATYDQAALVLSIPRRKPTDETQETLRTSDFPSTHVKEKWAKNLYIASICYGRTVS*