AlfalfaGEDB | Msa0161820

M. sativa cultivar zhongmu-4 / Msa0161820

KEGG: K10268|K11594
GO: GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003729 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005777 GO:0005886 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016020 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042579 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0071944 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363
PFAM: PF00270.32

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0161820	XP_013467733.1	95.888	608	6	3	1	589	1	608	0.0	1182

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0161820	sp\|Q84W89\|RH37_ARATH	72.535	568	112	8	7	537	2	562	0.0	795

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0161820	A0A072VUJ1	95.888	608	6	3	1	589	1	608	0.0	1182

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0018070	Msa0161820	0.803806	2.924610e-49	-8.615850e-47
Msa0020390	Msa0161820	0.807822	4.190130e-50	-8.615850e-47
Msa0115190	Msa0161820	0.851031	1.156051e-60	-8.615850e-47
Msa0118540	Msa0161820	0.886789	2.519520e-72	-8.615850e-47
Msa0161820	Msa0190120	0.800719	1.263309e-48	-8.615850e-47
Msa0161820	Msa0233370	0.802610	5.169388e-49	-8.615850e-47
Msa0161820	Msa0271790	0.800090	1.696336e-48	-8.615850e-47
Msa0161820	Msa0321690	0.802704	4.945509e-49	-8.615850e-47
Msa0161820	Msa0358860	0.816377	5.705186e-52	-8.615850e-47
Msa0161820	Msa0388730	0.817658	2.941290e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0161820	MtrunA17_Chr1g0176041	95.888	608	6	3	1	589	1	608	0.0	1182
Msa0161820	MtrunA17_Chr3g0121351	69.856	627	128	10	8	589	3	613	0.0	768
Msa0161820	MtrunA17_Chr4g0063551	58.448	580	192	12	8	554	3	566	0.0	610
Msa0161820	MtrunA17_Chr3g0107851	46.234	385	195	4	133	514	101	476	4.14e-109	338
Msa0161820	MtrunA17_Chr2g0330401	45.026	382	186	6	136	512	83	445	1.05e-105	327
Msa0161820	MtrunA17_Chr6g0449911	42.609	460	229	8	136	578	152	593	8.06e-101	321
Msa0161820	MtrunA17_Chr2g0293631	42.958	426	209	8	136	545	483	890	1.55e-97	322
Msa0161820	MtrunA17_Chr4g0076491	39.294	453	229	9	110	528	244	684	1.20e-95	307
Msa0161820	MtrunA17_Chr7g0270131	41.589	428	218	10	104	514	172	584	1.41e-95	309
Msa0161820	MtrunA17_Chr6g0449741	40.094	424	216	7	132	528	232	644	1.47e-93	301

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0161820	AT2G42520.2	72.535	568	112	8	7	537	2	562	0.0	795
Msa0161820	AT2G42520.1	72.535	568	112	8	7	537	2	562	0.0	795
Msa0161820	AT2G42520.3	72.535	568	112	8	7	537	2	562	0.0	795
Msa0161820	AT3G58570.1	71.171	555	132	6	5	537	1	549	0.0	758
Msa0161820	AT3G58510.1	70.345	580	124	11	7	553	2	566	0.0	751
Msa0161820	AT3G58510.3	70.345	580	124	11	7	553	2	566	0.0	751
Msa0161820	AT3G58510.2	70.345	580	124	11	7	553	2	566	0.0	751
Msa0161820	AT5G63120.2	46.753	385	179	8	133	512	152	515	1.44e-107	335
Msa0161820	AT1G55150.1	43.455	382	192	6	136	512	87	449	1.84e-105	327
Msa0161820	AT5G14610.6	39.698	529	258	13	43	538	48	548	4.91e-105	330

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Find 200 sgRNAs with CRISPR-Local

Find 384 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATAACCTGTTGGGTGAT+CGG	0.572239	1_4:+37906027	None:intergenic
AAAGGAAATGATTACTATGG+TGG	0.493627	1_4:-37902210	Msa0161820:CDS
AACACTGCTTGTGTGTTAAC+GGG	0.434919	1_4:-37903614	Msa0161820:CDS
AACAGAGGAGGAGCGGGGAA+TGG	0.469033	1_4:-37906651	Msa0161820:CDS
AACAGGACGAGCTGGTAAAA+TGG	0.309296	1_4:-37902533	Msa0161820:CDS
AACATCACGGCCACCAAAAC+GGG	0.371256	1_4:+37902254	None:intergenic
AACATTTCCCAAAGAGATAC+AGG	0.451243	1_4:-37905686	Msa0161820:intron
AACTTTGAGAACAGCTACAT+GGG	0.566954	1_4:-37906907	Msa0161820:CDS
AAGAAAGATAGTTGAACAAA+TGG	0.437695	1_4:-37905752	Msa0161820:CDS
AAGGAGAGCTCATATAATAA+AGG	0.419864	1_4:-37902228	Msa0161820:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAATCTTCATCTCCTTCA+AGG	-	chr1_4:37902287-37902306	Msa0161820:CDS	30.0%
TCATCAACATCATTCTCAAA+CGG	+	chr1_4:37902991-37903010	None:intergenic	30.0%
CAAATTACCTGTATCTCTTT+GGG	+	chr1_4:37903903-37903922	None:intergenic	30.0%
ACAAATTACCTGTATCTCTT+TGG	+	chr1_4:37903904-37903923	None:intergenic	30.0%
AATTGAGATTGCCATAATTC+AGG	-	chr1_4:37904117-37904136	Msa0161820:intron	30.0%
ATGTTCAAACACCTGAATTA+TGG	+	chr1_4:37904131-37904150	None:intergenic	30.0%
AACATAACTCCAAGATAACT+AGG	+	chr1_4:37904437-37904456	None:intergenic	30.0%
AGTTATCTTGGAGTTATGTT+TGG	-	chr1_4:37904437-37904456	Msa0161820:intron	30.0%
CGATACATGATTCAAAAAAG+TGG	-	chr1_4:37904577-37904596	Msa0161820:intron	30.0%
ACCTATTCTAATAATCCTCA+AGG	-	chr1_4:37904781-37904800	Msa0161820:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_4	gene	37902134	37907467	37902134	ID=Msa0161820;Name=Msa0161820
chr1_4	mRNA	37902134	37907467	37902134	ID=Msa0161820-mRNA-1;Parent=Msa0161820;Name=Msa0161820-mRNA-1;_AED=0.17;_eAED=0.17;_QI=281\|0.85\|0.75\|1\|0.85\|0.75\|8\|0\|589
chr1_4	exon	37902134	37902363	37902134	ID=Msa0161820-mRNA-1:exon:11099;Parent=Msa0161820-mRNA-1
chr1_4	exon	37902506	37902713	37902506	ID=Msa0161820-mRNA-1:exon:11098;Parent=Msa0161820-mRNA-1
chr1_4	exon	37903575	37903688	37903575	ID=Msa0161820-mRNA-1:exon:11097;Parent=Msa0161820-mRNA-1
chr1_4	exon	37903875	37904042	37903875	ID=Msa0161820-mRNA-1:exon:11096;Parent=Msa0161820-mRNA-1
chr1_4	exon	37905687	37905929	37905687	ID=Msa0161820-mRNA-1:exon:11095;Parent=Msa0161820-mRNA-1
chr1_4	exon	37906035	37906118	37906035	ID=Msa0161820-mRNA-1:exon:11094;Parent=Msa0161820-mRNA-1
chr1_4	exon	37906215	37907043	37906215	ID=Msa0161820-mRNA-1:exon:11093;Parent=Msa0161820-mRNA-1
chr1_4	exon	37907293	37907467	37907293	ID=Msa0161820-mRNA-1:exon:11092;Parent=Msa0161820-mRNA-1
chr1_4	five_prime_UTR	37907293	37907467	37907293	ID=Msa0161820-mRNA-1:five_prime_utr;Parent=Msa0161820-mRNA-1
chr1_4	five_prime_UTR	37906938	37907043	37906938	ID=Msa0161820-mRNA-1:five_prime_utr;Parent=Msa0161820-mRNA-1
chr1_4	CDS	37906215	37906937	37906215	ID=Msa0161820-mRNA-1:cds;Parent=Msa0161820-mRNA-1
chr1_4	CDS	37906035	37906118	37906035	ID=Msa0161820-mRNA-1:cds;Parent=Msa0161820-mRNA-1
chr1_4	CDS	37905687	37905929	37905687	ID=Msa0161820-mRNA-1:cds;Parent=Msa0161820-mRNA-1
chr1_4	CDS	37903875	37904042	37903875	ID=Msa0161820-mRNA-1:cds;Parent=Msa0161820-mRNA-1
chr1_4	CDS	37903575	37903688	37903575	ID=Msa0161820-mRNA-1:cds;Parent=Msa0161820-mRNA-1
chr1_4	CDS	37902506	37902713	37902506	ID=Msa0161820-mRNA-1:cds;Parent=Msa0161820-mRNA-1
chr1_4	CDS	37902134	37902363	37902134	ID=Msa0161820-mRNA-1:cds;Parent=Msa0161820-mRNA-1

Gene Sequence

>Msa0161820

ATGTCTGCAACTTTGAGAACAGCTACATGGGCAGATGCTGCTGACAATGCAGCTAATGCTTCATCGGCCGCGCGCCCGGTCAAGCCGGCTTATGTTCCTCCGCATCTTCGTAACCGATCAATGGCTGCTCCGGCCGAGCCACCTTCTTTGGTGGCCAATGATAGGGGTTTGGGTAATAATTGGGGTAGTTCGTCGAATTTTAAGCAGGATTTTGGGGCTGGGAGACAAGTAGGTGGAGGGTACGGTGGTGGTGGTGGTGGGTTTAACAGAGGAGGAGCGGGGAATGGGAGGGAGCGTGTGGGTGGAGGAAGACGTGAGGTGAATCCGTTTGAGAATGATGTTGATGAACCGTTTACTGAGCAAGAGAATACGGGTATTAACTTTGATGCTTATGATGATATTCCTGTGGAGACGAGTGGGGAGAATGTTCCGCCTCCGGTGAATACGTTTGCGGAAATAGATTTAGGTGATGCGTTGAATCAGAATATAAAGAGATGTAAGTATGTGAAACCGACACCGGTTCAGAGGTATGCTATACCGATTTCGCTTGCTGGGAGAGATTTGATGGCTTGTGCTCAGACGGGTTCAGGAAAGACAGCTGCATTTTGCTTTCCGATTATAAGCGGAATCCTTAGGGAGCAGTATGCTCAAAGACCACGTGTGGCACGGACTGCTTATCCTCTCGCACTTATCCTATCCCCTACTCGGGAGCTCTCTTGTCAGATACATGACGAGGCCAAGAAGTTTTCTTATCAAACAGGGGTCAAGGTCGTAGTTGCTTATGGAGGAGCACCGATCACCCAACAGTTGCGGGAGCTTGAGAGAGGTGTTGATATTCTGGTGGCAACTCCAGGACGATTGGTGGATTTGCTTGAGAGGGCTAGGGTGTCATTGCAGATGATAAGATATCTAGCTCTTGATGAAGCAGATCGGATGCTGGATATGGGTTTTGAGCCTCAAATAAGAAAGATAGTTGAACAAATGGACATGCCTCCTCCAGGCATGAGACAGACGCTGCTGTTTAGTGCAACATTTCCCAAAGAGATACAGAGACTTGCTTCAGATTTTCTTGCTAGTTATATCTTTCTGGCTGTTGGAAGGGTTGGTTCAAGTACCGATCTAATTGCTCAAAGAGTAGAATATGTGCTGGAGTCTGACAAGAGAAGCCACCTCATGGACCTCCTTCATGCTCAGAGAGAAAATGATGTGAATGGCAAGCAAGGTCTGACTTTAGTGTTTGTGGAAACGAAGAAAGGTGCTGATGCATTGGAACACTGCTTGTGTGTTAACGGGTTTCCTGCAACTTGCATTCATGGCGACAGAACACAGCAAGAAAGAGAACAAGCATTGAGATCATTCAAGACTGGAAACACTCCAATTCTAGTGGCAACGGATGTTGCAGCACGTGGTCTTGATATTCCACGTGTAGCACATGTGGTAAACTTTGATCTTCCCAATGACATTGATGATTATGTGCACCGGATAGGAAGAACAGGACGAGCTGGTAAAATGGGATTAGCAACAGCCTTCTTCAATGACAAGGCAAATCAAGAAGTACCTGCATGGCTCACCCGTTATGCAGCAAGGACTCCTTATGGTGGTGGTAGAAACAAGCGGACTGGGGGAGCCCGTTTTGGTGGCCGTGATGTTAGGAAGGAGAGCTCATATAATAAAGGAAATGATTACTATGGTGGAAACGGTGGTGGTTATGGTGTTCCTGCCAGTTATGGCGGAGGGTATGGTCAAGGTGTAACAAGTGCTTGGGATTAG

Protein sequence

>Msa0161820

MSATLRTATWADAADNAANASSAARPVKPAYVPPHLRNRSMAAPAEPPSLVANDRGLGNNWGSSSNFKQDFGAGRQVGGGYGGGGGGFNRGGAGNGRERVGGGRREVNPFENDVDEPFTEQENTGINFDAYDDIPVETSGENVPPPVNTFAEIDLGDALNQNIKRCKYVKPTPVQRYAIPISLAGRDLMACAQTGSGKTAAFCFPIISGILREQYAQRPRVARTAYPLALILSPTRELSCQIHDEAKKFSYQTGVKVVVAYGGAPITQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPPGMRQTLLFSATFPKEIQRLASDFLASYIFLAVGRVGSSTDLIAQRVEYVLESDKRSHLMDLLHAQRENDVNGKQGLTLVFVETKKGADALEHCLCVNGFPATCIHGDRTQQEREQALRSFKTGNTPILVATDVAARGLDIPRVAHVVNFDLPNDIDDYVHRIGRTGRAGKMGLATAFFNDKANQEVPAWLTRYAARTPYGGGRNKRTGGARFGGRDVRKESSYNKGNDYYGGNGGGYGVPASYGGGYGQGVTSAWD*