AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0403770

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0403770 MtrunA17_Chr3g0109721 97.093 172 5 0 1 172 1 172 2.49e-123 346
Msa0403770 MtrunA17_Chr5g0433561 90.698 172 16 0 1 172 1 172 2.22e-116 328
Msa0403770 MtrunA17_Chr8g0390561 73.171 164 44 0 8 171 7 170 1.23e-89 261
Msa0403770 MtrunA17_Chr1g0199331 63.253 166 60 1 8 172 29 194 3.47e-76 226
Msa0403770 MtrunA17_Chr8g0381841 45.294 170 90 1 12 181 19 185 1.10e-49 160
Msa0403770 MtrunA17_Chr8g0349711 45.000 160 88 0 12 171 8 167 1.97e-49 159
Msa0403770 MtrunA17_Chr2g0276941 46.784 171 86 2 12 181 17 183 3.45e-49 159
Msa0403770 MtrunA17_Chr4g0040781 44.118 170 92 1 12 181 15 181 3.84e-49 158
Msa0403770 MtrunA17_Chr2g0319951 44.706 170 91 1 12 181 15 181 5.98e-49 158
Msa0403770 MtrunA17_Chr6g0458081 43.750 160 90 0 12 171 8 167 1.40e-48 157
Msa0403770 MtrunA17_Chr4g0032201 44.118 170 92 1 12 181 14 180 1.57e-48 157
Msa0403770 MtrunA17_Chr3g0123821 46.795 156 83 0 12 167 18 173 2.69e-48 156
Msa0403770 MtrunA17_Chr2g0315551 44.118 170 92 1 12 181 15 181 3.23e-48 156
Msa0403770 MtrunA17_Chr2g0283131 43.529 170 93 1 12 181 15 181 4.42e-48 155
Msa0403770 MtrunA17_Chr4g0055651 46.250 160 86 0 12 171 10 169 5.90e-48 155
Msa0403770 MtrunA17_Chr3g0112681 45.294 170 90 1 12 181 14 180 8.60e-48 155
Msa0403770 MtrunA17_Chr6g0482721 47.059 170 87 1 12 181 14 180 1.33e-47 154
Msa0403770 MtrunA17_Chr3g0123971 41.566 166 97 0 12 177 11 176 1.65e-47 154
Msa0403770 MtrunA17_Chr8g0382221 42.236 161 93 0 12 172 11 171 3.41e-47 153
Msa0403770 MtrunA17_Chr4g0046261 42.941 170 94 1 12 181 15 181 4.23e-47 153
Msa0403770 MtrunA17_Chr8g0349681 45.625 160 87 0 12 171 386 545 4.47e-47 162
Msa0403770 MtrunA17_Chr8g0349681 45.000 160 88 0 12 171 177 336 4.92e-46 159
Msa0403770 MtrunA17_Chr8g0349681 41.916 167 97 0 12 178 15 181 3.06e-44 154
Msa0403770 MtrunA17_Chr1g0189361 44.118 170 92 1 12 181 16 182 1.01e-46 152
Msa0403770 MtrunA17_Chr2g0290891 42.500 160 92 0 12 171 8 167 1.02e-46 152
Msa0403770 MtrunA17_Chr7g0275991 44.375 160 89 0 12 171 22 181 1.45e-46 152
Msa0403770 MtrunA17_Chr1g0174281 44.118 170 92 1 12 181 17 183 5.95e-46 150
Msa0403770 MtrunA17_Chr8g0346421 45.625 160 87 0 12 171 28 187 6.11e-46 150
Msa0403770 MtrunA17_Chr7g0234201 44.706 170 91 1 12 181 15 181 6.55e-46 150
Msa0403770 MtrunA17_Chr8g0351861 43.529 170 93 1 12 181 18 184 6.82e-46 150
Msa0403770 MtrunA17_Chr5g0400131 40.994 161 95 0 12 172 11 171 1.57e-45 149
Msa0403770 MtrunA17_Chr2g0325091 42.353 170 95 1 12 181 13 179 2.28e-45 149
Msa0403770 MtrunA17_Chr7g0250531 44.375 160 89 0 12 171 10 169 2.42e-45 148
Msa0403770 MtrunA17_Chr4g0055081 40.373 161 96 0 12 172 11 171 6.26e-45 147
Msa0403770 MtrunA17_Chr7g0231131 45.513 156 85 0 12 167 17 172 8.04e-45 147
Msa0403770 MtrunA17_Chr7g0214241 42.353 170 95 1 12 181 17 183 2.27e-44 146
Msa0403770 MtrunA17_Chr8g0335471 44.375 160 89 0 12 171 10 169 3.37e-44 145
Msa0403770 MtrunA17_Chr1g0182301 42.236 161 92 1 12 171 17 177 3.09e-42 141
Msa0403770 MtrunA17_Chr1g0182321 42.236 161 92 1 12 171 17 177 6.80e-42 140
Msa0403770 MtrunA17_Chr7g0263071 41.615 161 93 1 12 171 17 177 9.83e-42 139
Msa0403770 MtrunA17_Chr4g0030911 41.615 161 93 1 12 171 17 177 2.05e-41 139
Msa0403770 MtrunA17_Chr1g0212521 41.615 161 93 1 12 171 17 177 2.08e-41 139
Msa0403770 MtrunA17_Chr2g0276931 41.875 160 93 0 12 171 11 170 2.40e-41 138
Msa0403770 MtrunA17_Chr8g0392931 46.250 160 86 0 12 171 16 175 5.26e-40 135
Msa0403770 MtrunA17_Chr8g0383261 41.250 160 87 4 12 164 14 173 3.78e-36 125
Msa0403770 MtrunA17_Chr2g0327911 37.654 162 99 2 12 171 17 178 1.52e-35 124
Msa0403770 MtrunA17_Chr7g0265001 39.877 163 96 2 7 167 13 175 3.04e-35 123
Msa0403770 MtrunA17_Chr1g0180291 38.728 173 103 3 8 178 12 183 1.21e-34 121
Msa0403770 MtrunA17_Chr8g0384311 41.139 158 90 3 12 167 15 171 1.36e-34 121
Msa0403770 MtrunA17_Chr1g0159481 39.873 158 92 3 12 167 19 175 1.10e-33 119
Msa0403770 MtrunA17_Chr6g0466301 37.952 166 96 3 12 170 10 175 1.93e-33 118
Msa0403770 MtrunA17_Chr6g0465491 37.952 166 96 3 12 170 10 175 1.93e-33 118
Msa0403770 MtrunA17_Chr4g0034871 38.037 163 94 3 12 167 10 172 1.64e-32 115
Msa0403770 MtrunA17_Chr3g0130271 40.881 159 90 4 12 167 14 171 3.26e-32 115
Msa0403770 MtrunA17_Chr1g0197331 38.365 159 95 3 12 167 17 175 4.42e-32 114
Msa0403770 MtrunA17_Chr1g0201121 37.952 166 96 3 12 170 10 175 4.48e-32 114
Msa0403770 MtrunA17_Chr2g0331691 35.673 171 103 3 1 164 1 171 9.74e-31 111
Msa0403770 MtrunA17_Chr4g0004661 35.542 166 100 3 12 170 66 231 6.82e-29 107
Msa0403770 MtrunA17_Chr3g0138101 34.641 153 97 3 12 164 15 164 5.65e-24 94.0
Msa0403770 MtrunA17_Chr3g0138111 34.641 153 97 3 12 164 15 164 6.49e-24 94.0
Msa0403770 MtrunA17_Chr3g0138121 34.641 153 97 3 12 164 15 164 7.36e-24 94.0
Msa0403770 MtrunA17_Chr2g0331841 69.492 59 18 0 78 136 1 59 7.43e-24 90.1
Msa0403770 MtrunA17_Chr8g0371501 33.939 165 95 4 12 164 8 170 1.96e-21 87.0
Msa0403770 MtrunA17_Chr5g0405791 33.333 165 96 4 12 164 8 170 1.06e-20 85.1
Msa0403770 MtrunA17_Chr3g0117931 32.335 167 95 6 12 164 10 172 3.13e-20 84.0
Msa0403770 MtrunA17_Chr6g0465471 31.544 149 95 3 29 170 9 157 4.09e-20 83.6
Msa0403770 MtrunA17_Chr6g0466161 31.544 149 95 3 29 170 9 157 4.17e-20 83.6
Msa0403770 MtrunA17_Chr4g0046211 34.426 122 77 3 12 132 8 127 3.12e-19 79.7
Msa0403770 MtrunA17_Chr2g0325101 30.303 165 101 4 12 164 8 170 5.21e-19 80.5
Msa0403770 MtrunA17_Chr6g0486041 31.138 167 97 5 12 164 8 170 9.42e-19 80.1
Msa0403770 MtrunA17_Chr4g0037021 30.909 165 100 4 12 164 8 170 1.10e-18 79.7
Msa0403770 MtrunA17_Chr6g0466431 37.113 97 52 1 12 108 10 97 1.61e-17 73.9
Msa0403770 MtrunA17_Chr6g0465611 37.113 97 52 1 12 108 10 97 1.61e-17 73.9
Msa0403770 MtrunA17_Chr5g0443631 30.675 163 103 4 9 164 103 262 3.34e-15 72.0
Msa0403770 MtrunA17_Chr4g0024431 30.625 160 101 4 12 164 93 249 1.39e-13 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0403770 AT5G45130.1 81.034 174 33 0 1 174 1 174 6.06e-104 297
Msa0403770 AT4G19640.1 80.460 174 34 0 1 174 1 174 3.99e-103 295
Msa0403770 AT5G45130.2 84.277 159 25 0 14 172 22 180 7.48e-98 282
Msa0403770 AT4G19640.2 84.286 140 22 0 1 140 1 140 2.07e-83 243
Msa0403770 AT4G19640.3 82.394 142 25 0 1 142 1 142 5.65e-83 244
Msa0403770 AT3G54840.1 62.651 166 61 1 8 172 31 196 4.08e-75 224
Msa0403770 AT3G54840.3 62.733 161 59 1 13 172 2 162 4.03e-73 218
Msa0403770 AT3G54840.2 63.291 158 57 1 8 164 31 188 1.01e-71 215
Msa0403770 AT5G45750.1 44.706 170 91 1 12 181 15 181 1.11e-49 160
Msa0403770 AT4G18800.1 44.118 170 92 1 12 181 15 181 1.29e-49 160
Msa0403770 AT1G16920.1 46.471 170 88 1 12 181 15 181 1.66e-49 160
Msa0403770 AT4G39990.1 47.059 153 81 0 12 164 19 171 3.70e-49 159
Msa0403770 AT1G07410.1 45.882 170 89 1 12 181 14 180 4.45e-49 159
Msa0403770 AT1G09630.1 45.882 170 89 1 12 181 14 180 6.45e-49 158
Msa0403770 AT5G60860.1 43.529 170 93 1 12 181 15 181 2.04e-48 157
Msa0403770 AT1G06400.1 48.077 156 81 0 12 167 15 170 2.99e-48 156
Msa0403770 AT4G18430.1 44.118 170 92 1 12 181 15 181 3.74e-48 156
Msa0403770 AT1G28550.1 42.941 170 94 1 12 181 15 181 3.90e-48 156
Msa0403770 AT4G17160.1 43.750 160 90 0 12 171 8 167 4.16e-48 156
Msa0403770 AT2G33870.1 43.529 170 93 1 12 181 15 181 1.14e-47 155
Msa0403770 AT3G07410.1 49.020 153 78 0 12 164 14 166 1.59e-47 155
Msa0403770 AT3G46830.1 45.614 171 88 2 12 181 14 180 1.93e-47 154
Msa0403770 AT3G46830.2 45.614 171 88 2 12 181 14 180 1.93e-47 154
Msa0403770 AT5G59150.1 44.118 170 92 1 12 181 14 180 2.32e-47 154
Msa0403770 AT2G44610.1 43.478 161 91 0 12 172 11 171 2.73e-47 154
Msa0403770 AT3G15060.1 43.529 170 93 1 12 181 15 181 3.43e-47 154
Msa0403770 AT4G35860.1 43.125 160 91 0 12 171 8 167 6.72e-47 153
Msa0403770 AT5G65270.1 44.872 156 86 0 12 167 19 174 9.58e-47 153
Msa0403770 AT3G12160.1 44.706 170 91 1 12 181 17 183 9.63e-47 153
Msa0403770 AT5G47520.1 43.529 170 93 1 12 181 16 182 2.83e-46 152
Msa0403770 AT1G02130.1 46.250 160 86 0 12 171 10 169 2.92e-46 151
Msa0403770 AT5G10260.1 41.615 161 94 0 12 172 11 171 3.70e-46 151
Msa0403770 AT4G17170.1 41.875 160 93 0 12 171 8 167 5.17e-46 150
Msa0403770 AT5G47960.1 42.941 170 94 1 12 181 17 183 2.56e-45 149
Msa0403770 AT2G43130.1 42.941 170 94 1 12 181 14 180 9.14e-45 147
Msa0403770 AT2G22290.1 40.994 161 95 0 12 172 11 171 1.31e-44 147
Msa0403770 AT4G39890.1 40.741 162 95 1 12 172 11 172 1.49e-44 147
Msa0403770 AT5G64990.1 44.231 156 87 0 12 167 9 164 3.99e-44 145
Msa0403770 AT4G17530.1 43.125 160 91 0 12 171 10 169 5.43e-44 145
Msa0403770 AT5G47200.1 43.125 160 91 0 12 171 10 169 5.86e-44 145
Msa0403770 AT2G31680.1 41.765 170 96 1 12 181 14 180 1.63e-43 144
Msa0403770 AT1G05810.1 41.765 170 96 1 12 181 14 180 3.14e-43 144
Msa0403770 AT1G73640.1 45.752 153 83 0 12 164 15 167 5.36e-43 144
Msa0403770 AT1G05810.2 41.765 170 96 1 12 181 60 226 7.87e-43 144
Msa0403770 AT3G46060.2 42.236 161 92 1 12 171 17 177 2.32e-42 141
Msa0403770 AT3G46060.3 42.236 161 92 1 12 171 17 177 2.32e-42 141
Msa0403770 AT3G46060.1 42.236 161 92 1 12 171 17 177 2.32e-42 141
Msa0403770 AT1G18200.1 45.098 153 84 0 12 164 15 167 3.55e-42 141
Msa0403770 AT3G11730.1 42.500 160 92 0 12 171 10 169 8.38e-42 140
Msa0403770 AT5G59840.1 41.615 161 93 1 12 171 17 177 1.92e-41 139
Msa0403770 AT1G01200.1 44.099 161 89 1 12 171 30 190 2.00e-41 140
Msa0403770 AT5G64990.2 42.331 163 87 1 12 167 9 171 2.47e-41 139
Msa0403770 AT3G53610.2 40.994 161 94 1 12 171 17 177 1.27e-40 137
Msa0403770 AT3G53610.3 40.994 161 94 1 12 171 17 177 1.27e-40 137
Msa0403770 AT3G53610.1 40.994 161 94 1 12 171 17 177 1.27e-40 137
Msa0403770 AT5G03520.1 40.994 161 94 1 12 171 17 177 4.57e-37 128
Msa0403770 AT3G09900.1 40.373 161 95 1 12 171 17 177 3.54e-36 125
Msa0403770 AT4G35860.2 45.000 120 66 0 52 171 2 121 1.25e-35 122
Msa0403770 AT1G43890.3 41.139 158 90 3 12 167 15 171 5.99e-35 122
Msa0403770 AT1G43890.1 41.139 158 90 3 12 167 15 171 5.99e-35 122
Msa0403770 AT1G43890.2 41.139 158 90 3 12 167 15 171 5.99e-35 122
Msa0403770 AT1G22740.1 39.877 163 91 3 12 167 10 172 1.26e-34 121
Msa0403770 AT5G59150.2 43.846 130 70 1 52 181 3 129 1.64e-33 117
Msa0403770 AT5G03530.2 38.728 173 103 3 8 178 11 182 3.33e-33 118
Msa0403770 AT5G03530.1 38.728 173 103 3 8 178 11 182 3.33e-33 118
Msa0403770 AT3G18820.1 37.576 165 96 3 12 169 10 174 4.32e-32 115
Msa0403770 AT2G21880.1 36.810 163 96 3 12 167 11 173 5.03e-32 115
Msa0403770 AT1G49300.2 38.037 163 94 3 12 167 10 172 6.29e-32 114
Msa0403770 AT1G49300.1 38.037 163 94 3 12 167 10 172 6.29e-32 114
Msa0403770 AT1G52280.1 36.875 160 94 3 12 164 10 169 5.23e-31 112
Msa0403770 AT3G16100.1 36.145 166 99 3 12 170 10 175 1.50e-30 111
Msa0403770 AT5G39620.1 36.364 165 98 4 12 169 7 171 5.27e-30 109
Msa0403770 AT4G09720.1 36.747 166 98 3 12 170 10 175 7.81e-30 109
Msa0403770 AT5G03520.2 38.889 126 76 1 47 171 42 167 3.32e-28 105
Msa0403770 AT3G09910.3 37.572 173 105 3 8 178 11 182 4.19e-28 104
Msa0403770 AT3G09910.1 37.572 173 105 3 8 178 11 182 4.19e-28 104
Msa0403770 AT3G09910.2 37.572 173 105 3 8 178 11 182 4.19e-28 104
Msa0403770 AT4G09720.4 36.257 171 97 4 12 170 10 180 7.34e-28 104
Msa0403770 AT3G09910.5 38.889 162 96 3 8 167 11 171 1.50e-27 103
Msa0403770 AT3G09910.4 38.889 162 96 3 8 167 11 171 1.50e-27 103
Msa0403770 AT4G09720.3 34.463 177 98 4 12 170 10 186 1.11e-26 101
Msa0403770 AT5G55080.1 31.250 160 107 3 12 171 15 171 3.34e-25 97.8
Msa0403770 AT2G21880.4 34.932 146 88 3 29 167 3 148 1.37e-24 95.1
Msa0403770 AT2G21880.3 34.932 146 88 3 29 167 3 148 1.37e-24 95.1
Msa0403770 AT5G20010.1 34.641 153 97 3 12 164 15 164 8.86e-24 94.0
Msa0403770 AT5G20020.1 34.641 153 97 3 12 164 15 164 9.05e-24 94.0
Msa0403770 AT5G55190.1 34.641 153 97 3 12 164 15 164 1.18e-23 93.6
Msa0403770 AT4G09720.6 36.232 138 81 3 40 170 4 141 2.54e-22 89.0
Msa0403770 AT4G09720.5 36.232 138 81 3 40 170 4 141 2.54e-22 89.0
Msa0403770 AT4G09720.2 36.232 138 81 3 40 170 4 141 2.54e-22 89.0
Msa0403770 AT2G21880.2 31.902 163 96 4 12 167 11 165 3.63e-22 89.4
Msa0403770 AT2G44690.1 34.731 167 95 5 12 166 20 184 1.50e-21 87.8
Msa0403770 AT4G35950.1 34.545 165 94 5 12 164 8 170 6.11e-21 85.9
Msa0403770 AT3G51300.1 32.727 165 97 4 12 164 8 170 6.72e-21 85.9
Msa0403770 AT2G17800.2 33.333 165 96 4 12 164 8 170 1.16e-20 85.1
Msa0403770 AT2G17800.1 33.333 165 96 4 12 164 8 170 1.16e-20 85.1
Msa0403770 AT4G28950.1 32.121 165 96 5 12 164 8 168 6.19e-20 83.6
Msa0403770 AT3G48040.1 30.539 167 98 5 12 164 10 172 3.47e-19 81.6
Msa0403770 AT4G35020.1 32.727 165 97 5 12 164 8 170 4.29e-19 81.3
Msa0403770 AT4G35020.2 32.727 165 97 5 12 164 8 170 4.29e-19 81.3
Msa0403770 AT4G35020.3 32.727 165 97 5 12 164 8 170 4.29e-19 81.3
Msa0403770 AT5G46025.1 42.553 94 53 1 72 164 6 99 5.38e-19 78.6
Msa0403770 AT5G62880.1 32.335 167 95 6 12 164 10 172 5.92e-19 81.3
Msa0403770 AT5G45970.1 30.909 165 100 4 12 164 8 170 1.07e-18 80.1
Msa0403770 AT1G75840.1 31.515 165 99 5 12 164 8 170 1.07e-18 80.1
Msa0403770 AT1G20090.1 31.515 165 99 5 12 164 7 169 1.74e-18 79.3
Msa0403770 AT5G62880.2 30.851 188 104 8 12 180 10 190 3.65e-18 78.6
Msa0403770 AT3G48040.2 33.077 130 80 4 12 138 10 135 3.27e-17 75.9
Msa0403770 AT3G51290.2 34.884 129 71 3 48 164 644 771 3.96e-16 76.3
Msa0403770 AT4G35020.4 34.211 114 72 3 12 124 8 119 1.04e-14 68.2
Msa0403770 AT4G35020.5 34.211 114 72 3 12 124 8 119 1.04e-14 68.2
Msa0403770 AT5G54840.1 30.435 161 100 6 12 164 103 259 8.93e-13 65.5
Msa0403770 AT3G21700.3 28.659 164 106 5 9 164 105 265 1.09e-11 62.4

Find 39 sgRNAs with CRISPR-Local

Find 226 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAGGTTCTTCTTGGTGATA+TGG 0.214614 3_2:-34342781 Msa0403770:intron
GGGTCAATTTCTCGAATTTC+AGG 0.243303 3_2:-34342721 Msa0403770:intron
AAGATTTAAGCTTTGAAGTT+AGG 0.257925 3_2:+34342973 None:intergenic
CAACAATCTCAATGCTAAAT+TGG 0.259093 3_2:-34342877 Msa0403770:intron
CAACGGTTAAATTTGAGATT+TGG 0.280373 3_2:-34341383 Msa0403770:CDS
GCAAGAGCCATGACCATGTT+TGG 0.310928 3_2:+34339902 None:intergenic
AACGGTTAAATTTGAGATTT+GGG 0.317804 3_2:-34341382 Msa0403770:CDS
CAGATTAAAGCATATATAAT+AGG 0.320583 3_2:+34339217 None:intergenic
ATTAACATTGGCTGCAGATT+TGG 0.324617 3_2:+34339270 None:intergenic
ATGCTTTAATCTGCAGAAAA+TGG 0.348099 3_2:-34339207 Msa0403770:CDS
CGTGTATATGCCGAGGAAAA+TGG 0.363462 3_2:-34339316 Msa0403770:CDS
AACATGGTCATGGCTCTTGC+TGG 0.370648 3_2:-34339899 Msa0403770:CDS
GTGGTGCAGGAATCAACAAT+AGG 0.376165 3_2:-34341444 Msa0403770:intron
CGTAGCCATGAGAAGAGAAT+TGG 0.383455 3_2:+34342908 None:intergenic
CAGGTTCTTCTTGGTGATAT+GGG 0.397120 3_2:-34342780 Msa0403770:CDS
AGATTTAAGCTTTGAAGTTA+GGG 0.398448 3_2:+34342974 None:intergenic
CAAGAGCCATGACCATGTTT+GGG 0.423378 3_2:+34339903 None:intergenic
TGGTGCAGGAATCAACAATA+GGG 0.434766 3_2:-34341443 Msa0403770:intron
CTTCTTGGTGATATGGGTGC+TGG 0.450654 3_2:-34342774 Msa0403770:CDS
GATCGAAAGTGAAGAGAGAA+AGG 0.471446 3_2:+34342934 None:intergenic
ATAAAATACATCATTAACAT+TGG 0.495428 3_2:+34339258 None:intergenic
TGCTGGCAACAAATCTGACT+TGG 0.506651 3_2:-34339882 Msa0403770:CDS
AGCTGCGCCTCTGTAATACA+TGG 0.526016 3_2:+34341323 None:intergenic
TTTGAGATTTGGGACACAGC+AGG 0.542819 3_2:-34341372 Msa0403770:CDS
TCGATCCAATTCTCTTCTCA+TGG 0.551685 3_2:-34342913 Msa0403770:exon
CCTTCTCACGAGCTAAGAAG+TGG 0.589371 3_2:-34340635 Msa0403770:CDS
ACAAGAGAGATACCATAGCT+TGG 0.597101 3_2:-34341349 Msa0403770:CDS
ATTGGCTGCAGATTTGGCAG+AGG 0.603013 3_2:+34339276 None:intergenic
AATACATGGGAGCCAAGCTA+TGG 0.603780 3_2:+34341337 None:intergenic
GCTTGCAGGCAACCCAAACA+TGG 0.608135 3_2:-34339915 Msa0403770:intron
GTCCAAGAGCTTCAAAAGCA+AGG 0.610196 3_2:-34340612 Msa0403770:intron
CCACTTCTTAGCTCGTGAGA+AGG 0.618362 3_2:+34340635 None:intergenic
AGGCAACCCAAACATGGTCA+TGG 0.632739 3_2:-34339909 Msa0403770:CDS
GGAAGCTCGTGTATATGCCG+AGG 0.658380 3_2:-34339323 Msa0403770:CDS
GCTGCGCCTCTGTAATACAT+GGG 0.659907 3_2:+34341324 None:intergenic
ATTAGCAGTAAATGACGCAA+CGG 0.668502 3_2:-34341400 Msa0403770:CDS
GGTGCAGGAATCAACAATAG+GGG 0.672375 3_2:-34341442 Msa0403770:intron
CTTCTCACGAGCTAAGAAGT+GGG 0.674595 3_2:-34340634 Msa0403770:CDS
TTGGCTCCCATGTATTACAG+AGG 0.724540 3_2:-34341330 Msa0403770:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATCTATAATATTTAACATGA+TGG - chr3_2:34341114-34341133 Msa0403770:intron 15.0%
!!! TAACATATCAATTTTAAAAC+AGG + chr3_2:34341170-34341189 None:intergenic 15.0%
!! AATAACTTATTAATCATTTG+AGG - chr3_2:34341886-34341905 Msa0403770:intron 15.0%
!!! GATTATTGATTATAGTATAT+TGG + chr3_2:34342877-34342896 None:intergenic 15.0%
!! ATAAAATACATCATTAACAT+TGG + chr3_2:34343014-34343033 None:intergenic 15.0%
!!! AATGATGTATTTTATGAAAT+AGG - chr3_2:34343019-34343038 Msa0403770:five_prime_UTR 15.0%
!! ATCAGAATTAAAAAAGATGA+AGG + chr3_2:34339443-34339462 None:intergenic 20.0%
!!! TCATCATTTTTGATTTGATT+AGG - chr3_2:34339577-34339596 Msa0403770:intron 20.0%
!!! AAGATTTTTCAATTAGAAGT+TGG - chr3_2:34339679-34339698 Msa0403770:intron 20.0%
!!! AGATTTTTCAATTAGAAGTT+GGG - chr3_2:34339680-34339699 Msa0403770:intron 20.0%
!!! ACTAATTTTCAAAGTTATTG+AGG - chr3_2:34339750-34339769 Msa0403770:intron 20.0%
!! TACAATAAATAATTTCGTGA+TGG - chr3_2:34340190-34340209 Msa0403770:intron 20.0%
!! AATTGAATGTAAATTTGTGT+AGG + chr3_2:34340518-34340537 None:intergenic 20.0%
!!! GTAAGTATAAGTTAGAATTT+TGG - chr3_2:34340612-34340631 Msa0403770:intron 20.0%
!!! ATTTTGTTCACAAGTTTATA+TGG - chr3_2:34340796-34340815 Msa0403770:intron 20.0%
!! TCAAATAATAAGTATCATTC+TGG + chr3_2:34341310-34341329 None:intergenic 20.0%
!!! AATTTTGTACCAATTATAGT+TGG + chr3_2:34341419-34341438 None:intergenic 20.0%
!! ACTATAATTGGTACAAAATT+TGG - chr3_2:34341419-34341438 Msa0403770:CDS 20.0%
!! TAGAATTGATATATTGCAAA+AGG - chr3_2:34341737-34341756 Msa0403770:intron 20.0%
!!! TGTTTTACTAGATTCAATTT+TGG - chr3_2:34341863-34341882 Msa0403770:intron 20.0%
!! ATTCTTAATCAACATACAAT+AGG - chr3_2:34342166-34342185 Msa0403770:intron 20.0%
!! CAGATTAAAGCATATATAAT+AGG + chr3_2:34343055-34343074 None:intergenic 20.0%
!!! AAATGGTCTTATTTTATTCT+TGG - chr3_2:34343079-34343098 Msa0403770:five_prime_UTR 20.0%
!!! AGATTTAAGCTTTGAAGTTA+GGG + chr3_2:34339298-34339317 None:intergenic 25.0%
!!! AAGATTTAAGCTTTGAAGTT+AGG + chr3_2:34339299-34339318 None:intergenic 25.0%
! GATTAAAAAACGAAGTTAGA+GGG + chr3_2:34339470-34339489 None:intergenic 25.0%
! TGATTAAAAAACGAAGTTAG+AGG + chr3_2:34339471-34339490 None:intergenic 25.0%
!!! TCTAACTTCGTTTTTTAATC+AGG - chr3_2:34339470-34339489 Msa0403770:intron 25.0%
!!! TTTTTTAATCAGGTTCTTCT+TGG - chr3_2:34339480-34339499 Msa0403770:intron 25.0%
!!! TCTTGTTTTAAGATTTGTCA+AGG - chr3_2:34339527-34339546 Msa0403770:intron 25.0%
!!! CTTGTTTTAAGATTTGTCAA+GGG - chr3_2:34339528-34339547 Msa0403770:intron 25.0%
! TACAATAAATAACTTCGTGA+TGG - chr3_2:34340006-34340025 Msa0403770:intron 25.0%
! AAATAATTTCGTGATGGTTA+TGG - chr3_2:34340196-34340215 Msa0403770:intron 25.0%
! CCACTAATAATGTAAGAAAA+TGG + chr3_2:34340377-34340396 None:intergenic 25.0%
!! CCATTTTCTTACATTATTAG+TGG - chr3_2:34340374-34340393 Msa0403770:intron 25.0%
!!! AGCTTTAAATAATTGTAGTC+TGG - chr3_2:34340635-34340654 Msa0403770:CDS 25.0%
! TTTAAATAATTGTAGTCTGG+TGG - chr3_2:34340638-34340657 Msa0403770:CDS 25.0%
! TTAAATAATTGTAGTCTGGT+GGG - chr3_2:34340639-34340658 Msa0403770:CDS 25.0%
! ATTATGTTAATGATGCTTCT+GGG - chr3_2:34340709-34340728 Msa0403770:intron 25.0%
!! AACGGTTAAATTTGAGATTT+GGG - chr3_2:34340887-34340906 Msa0403770:intron 25.0%
! CAAAATTACAAGTCAAAAAC+TGG + chr3_2:34341062-34341081 None:intergenic 25.0%
! TGCGAAGTATAACTTAAAAA+TGG - chr3_2:34341229-34341248 Msa0403770:intron 25.0%
! TTCATACTTATTAAACTTCC+AGG + chr3_2:34341278-34341297 None:intergenic 25.0%
! ATATTATCAGCTCTTTATCA+GGG - chr3_2:34341334-34341353 Msa0403770:CDS 25.0%
!! AATTGTAATGAGGATTTTTC+TGG + chr3_2:34341374-34341393 None:intergenic 25.0%
! TATTCGTCTAATTTCTCAAT+AGG - chr3_2:34341573-34341592 Msa0403770:intron 25.0%
! ATTCGTCTAATTTCTCAATA+GGG - chr3_2:34341574-34341593 Msa0403770:intron 25.0%
!!! AAAGCAAGGTATTAACTTTT+TGG - chr3_2:34341671-34341690 Msa0403770:intron 25.0%
! AAACATAAAAGATAACACGA+GGG + chr3_2:34341848-34341867 None:intergenic 25.0%
! AAAACATAAAAGATAACACG+AGG + chr3_2:34341849-34341868 None:intergenic 25.0%
!! TGTTTTATAATAGAACAGCA+TGG - chr3_2:34341923-34341942 Msa0403770:intron 25.0%
! CATGGTATAAAAAGCAATAT+TGG + chr3_2:34342456-34342475 None:intergenic 25.0%
! GTCAAAATTGAAGTTTATGA+TGG + chr3_2:34342805-34342824 None:intergenic 25.0%
!!! TAATCAATAATCACTTTTCC+TGG - chr3_2:34342885-34342904 Msa0403770:CDS 25.0%
!! ATTCTATTGCTTTTCGCTTA+CGG + chr3_2:34339211-34339230 None:intergenic 30.0%
!! AGCTTAAATCTTTCGCTTTT+TGG - chr3_2:34339307-34339326 Msa0403770:CDS 30.0%
!!! GCTTAAATCTTTCGCTTTTT+GGG - chr3_2:34339308-34339327 Msa0403770:CDS 30.0%
CAACAATCTCAATGCTAAAT+TGG - chr3_2:34339392-34339411 Msa0403770:intron 30.0%
! AGGAAGTTGTTTAAGTTCAA+TGG - chr3_2:34339597-34339616 Msa0403770:intron 30.0%
! GGAAGTTGTTTAAGTTCAAT+GGG - chr3_2:34339598-34339617 Msa0403770:intron 30.0%
AAATAACTTCGTGATGGTTA+TGG - chr3_2:34340012-34340031 Msa0403770:intron 30.0%
TAGCACTTACACTTTGAATA+AGG - chr3_2:34340125-34340144 Msa0403770:intron 30.0%
TAAATAATTGTAGTCTGGTG+GGG - chr3_2:34340640-34340659 Msa0403770:CDS 30.0%
! TTTCTTCTTTCTTTTCTCTG+AGG - chr3_2:34340674-34340693 Msa0403770:intron 30.0%
GATTATGTTAATGATGCTTC+TGG - chr3_2:34340708-34340727 Msa0403770:intron 30.0%
! CAAGTTTATATGGTCTTTTG+TGG - chr3_2:34340806-34340825 Msa0403770:intron 30.0%
! CAACGGTTAAATTTGAGATT+TGG - chr3_2:34340886-34340905 Msa0403770:intron 30.0%
! TTTTTGAATACCTACTTCGT+TGG - chr3_2:34341026-34341045 Msa0403770:intron 30.0%
! TTTTGAATACCTACTTCGTT+GGG - chr3_2:34341027-34341046 Msa0403770:intron 30.0%
AAAAATGTTCTGATTCTGAC+TGG - chr3_2:34341189-34341208 Msa0403770:intron 30.0%
AAAATGTTCTGATTCTGACT+GGG - chr3_2:34341190-34341209 Msa0403770:intron 30.0%
CATATTATCAGCTCTTTATC+AGG - chr3_2:34341333-34341352 Msa0403770:CDS 30.0%
TCATTACAATTGTATGCACA+GGG - chr3_2:34341383-34341402 Msa0403770:CDS 30.0%
!!! CATCAATTTTTTCCTAAACG+TGG - chr3_2:34341472-34341491 Msa0403770:intron 30.0%
TACTTCTATCTTCTATTCAC+AGG - chr3_2:34341608-34341627 Msa0403770:intron 30.0%
!!! AGGTATTAACTTTTTGGTTC+AGG - chr3_2:34341677-34341696 Msa0403770:intron 30.0%
TAAAACCATTTCCAAACTTC+TGG - chr3_2:34341775-34341794 Msa0403770:intron 30.0%
ATGGAAAATGCTTTACTAGA+AGG + chr3_2:34341807-34341826 None:intergenic 30.0%
TCAAAAGTTAAATGTGTCTC+TGG + chr3_2:34342048-34342067 None:intergenic 30.0%
TTACTATACATCTTGCTAGA+AGG - chr3_2:34342122-34342141 Msa0403770:intron 30.0%
TTCCTTTCTCTAGTAATACT+TGG - chr3_2:34342263-34342282 Msa0403770:intron 30.0%
AACCAAGTATTACTAGAGAA+AGG + chr3_2:34342268-34342287 None:intergenic 30.0%
TTCTCTAGTAATACTTGGTT+TGG - chr3_2:34342268-34342287 Msa0403770:intron 30.0%
GAGAATATTGACACTTACTT+CGG + chr3_2:34342434-34342453 None:intergenic 30.0%
! TGTTATTGATTGCTTAGGAT+AGG + chr3_2:34342536-34342555 None:intergenic 30.0%
!! TGCTTTGTTATTGATTGCTT+AGG + chr3_2:34342541-34342560 None:intergenic 30.0%
! CAATCAATAACAAAGCATCA+GGG - chr3_2:34342544-34342563 Msa0403770:intron 30.0%
! AATCAATAACAAAGCATCAG+GGG - chr3_2:34342545-34342564 Msa0403770:intron 30.0%
TTAGCAAAGAAGTTAATCAC+AGG - chr3_2:34342589-34342608 Msa0403770:intron 30.0%
!!! TCAATTGCTTTTGAAGTGTT+TGG - chr3_2:34342658-34342677 Msa0403770:intron 30.0%
! AGCATGATTGGTAATTTCAT+AGG - chr3_2:34342843-34342862 Msa0403770:intron 30.0%
TTTCGATTCATTGATATTGC+AGG - chr3_2:34342925-34342944 Msa0403770:five_prime_UTR 30.0%
! GAAAAACAAACCATTTTCCT+CGG + chr3_2:34342966-34342985 None:intergenic 30.0%
!!! GGAAAATGGTTTGTTTTTCA+TGG - chr3_2:34342967-34342986 Msa0403770:five_prime_UTR 30.0%
ATGCTTTAATCTGCAGAAAA+TGG - chr3_2:34343062-34343081 Msa0403770:five_prime_UTR 30.0%
ACATTACAGTGACAACATGT+CGG + chr3_2:34339828-34339847 None:intergenic 35.0%
ATGTTGTCACTGTAATGTGA+TGG - chr3_2:34339830-34339849 Msa0403770:intron 35.0%
TCACTGTAATGTGATGGTTA+CGG - chr3_2:34339836-34339855 Msa0403770:intron 35.0%
GTCATGTATTACCTATGCTT+TGG - chr3_2:34339871-34339890 Msa0403770:CDS 35.0%
AAGACTTGAATCCAAAGCAT+AGG + chr3_2:34339885-34339904 None:intergenic 35.0%
TAGCCCTTACACTTTGATTA+AGG - chr3_2:34339942-34339961 Msa0403770:intron 35.0%
CCTCCTTAATCAAAGTGTAA+GGG + chr3_2:34339948-34339967 None:intergenic 35.0%
ACCTCCTTAATCAAAGTGTA+AGG + chr3_2:34339949-34339968 None:intergenic 35.0%
AAGACTTGAATCCGAAGTAT+CGG + chr3_2:34340068-34340087 None:intergenic 35.0%
TAATTTCGTGATGGTTATGG+AGG - chr3_2:34340199-34340218 Msa0403770:intron 35.0%
!! TACTAGTAAGTTCTGAAGCA+CGG - chr3_2:34340431-34340450 Msa0403770:intron 35.0%
AAATAATTGTAGTCTGGTGG+GGG - chr3_2:34340641-34340660 Msa0403770:CDS 35.0%
!!! TTTTGAGCCCTGTTATTTTG+TGG - chr3_2:34340738-34340757 Msa0403770:intron 35.0%
! GGTGATGTGCTTTAAATGTA+TGG - chr3_2:34340763-34340782 Msa0403770:intron 35.0%
ATTAGCAGTAAATGACGCAA+CGG - chr3_2:34340869-34340888 Msa0403770:intron 35.0%
! GATGGTTAGTTAACAGACAT+AGG - chr3_2:34341132-34341151 Msa0403770:intron 35.0%
CTGTGCATACAATTGTAATG+AGG + chr3_2:34341384-34341403 None:intergenic 35.0%
CTCATTACAATTGTATGCAC+AGG - chr3_2:34341382-34341401 Msa0403770:CDS 35.0%
CCAATTATAGTTGGAACAAG+TGG + chr3_2:34341410-34341429 None:intergenic 35.0%
CCACTTGTTCCAACTATAAT+TGG - chr3_2:34341407-34341426 Msa0403770:CDS 35.0%
GAAGAGATCGAATATGCTAA+CGG - chr3_2:34341494-34341513 Msa0403770:intron 35.0%
AAGAGATCGAATATGCTAAC+GGG - chr3_2:34341495-34341514 Msa0403770:intron 35.0%
! GGATTCTTTCTTTTGTCTTG+TGG - chr3_2:34341516-34341535 Msa0403770:intron 35.0%
! TCTTTCTTTTGTCTTGTGGT+TGG - chr3_2:34341520-34341539 Msa0403770:intron 35.0%
! CTTTCTTTTGTCTTGTGGTT+GGG - chr3_2:34341521-34341540 Msa0403770:intron 35.0%
! TGCATGTAAGTATTGTGAAC+AGG - chr3_2:34341993-34342012 Msa0403770:intron 35.0%
! GCATGTAAGTATTGTGAACA+GGG - chr3_2:34341994-34342013 Msa0403770:intron 35.0%
CAATCAAACATTGTCTGCTT+TGG - chr3_2:34342237-34342256 Msa0403770:intron 35.0%
! AATTTCATGTTGTTGCTTGC+AGG - chr3_2:34342340-34342359 Msa0403770:intron 35.0%
GCACATAACACTTACTAACA+TGG + chr3_2:34342474-34342493 None:intergenic 35.0%
! GCAATCAATAACAAAGCATC+AGG - chr3_2:34342543-34342562 Msa0403770:intron 35.0%
CTCCATCAGATTTCACTAAT+TGG - chr3_2:34342627-34342646 Msa0403770:intron 35.0%
GACCAATTAGTGAAATCTGA+TGG + chr3_2:34342632-34342651 None:intergenic 35.0%
!!! TTGCTTTTGAAGTGTTTGGA+AGG - chr3_2:34342662-34342681 Msa0403770:intron 35.0%
!!! TGCTTTTGAAGTGTTTGGAA+GGG - chr3_2:34342663-34342682 Msa0403770:intron 35.0%
ATTACCAATCATGCTGCAAT+GGG + chr3_2:34342838-34342857 None:intergenic 35.0%
AATTACCAATCATGCTGCAA+TGG + chr3_2:34342839-34342858 None:intergenic 35.0%
ATCGAAAGTGATAAACCAGT+AGG + chr3_2:34342912-34342931 None:intergenic 35.0%
! ATTAACATTGGCTGCAGATT+TGG + chr3_2:34343002-34343021 None:intergenic 35.0%
GATCGAAAGTGAAGAGAGAA+AGG + chr3_2:34339338-34339357 None:intergenic 40.0%
TCGATCCAATTCTCTTCTCA+TGG - chr3_2:34339356-34339375 Msa0403770:intron 40.0%
ATGAAGGAAGAGAAGAACAG+AGG + chr3_2:34339427-34339446 None:intergenic 40.0%
! TCAGGTTCTTCTTGGTGATA+TGG - chr3_2:34339488-34339507 Msa0403770:intron 40.0%
! CAGGTTCTTCTTGGTGATAT+GGG - chr3_2:34339489-34339508 Msa0403770:intron 40.0%
GGGTCAATTTCTCGAATTTC+AGG - chr3_2:34339548-34339567 Msa0403770:intron 40.0%
TCTTGTCTGATGTTCCACAA+TGG - chr3_2:34339901-34339920 Msa0403770:CDS 40.0%
CCCTTACACTTTGATTAAGG+AGG - chr3_2:34339945-34339964 Msa0403770:intron 40.0%
TACCACAGTAATGACACATG+CGG + chr3_2:34339981-34340000 None:intergenic 40.0%
TAACTTCGTGATGGTTATGG+AGG - chr3_2:34340015-34340034 Msa0403770:intron 40.0%
CTAACTACTACCTCCATTGT+GGG + chr3_2:34339917-34339936 None:intergenic 40.0%
TAGTGACTAGTGACACATGT+CGG + chr3_2:34340267-34340286 None:intergenic 40.0%
TGTCAGTGTCAGTGTTTCAT+AGG - chr3_2:34340397-34340416 Msa0403770:intron 40.0%
CAGGAAACACCTAATCTAAG+AGG + chr3_2:34340460-34340479 None:intergenic 40.0%
TATCCATGTCAGTGTCTTGT+CGG - chr3_2:34340572-34340591 Msa0403770:intron 40.0%
TCACCAGCCACAAAATAACA+GGG + chr3_2:34340748-34340767 None:intergenic 40.0%
ATCACCAGCCACAAAATAAC+AGG + chr3_2:34340749-34340768 None:intergenic 40.0%
! TATATGGTCTTTTGTGGTGC+AGG - chr3_2:34340812-34340831 Msa0403770:intron 40.0%
TGGTGCAGGAATCAACAATA+GGG - chr3_2:34340826-34340845 Msa0403770:intron 40.0%
ACAAGAGAGATACCATAGCT+TGG - chr3_2:34340920-34340939 Msa0403770:intron 40.0%
ATTCGATCTCTTCCACGTTT+AGG + chr3_2:34341487-34341506 None:intergenic 40.0%
!!! TACCTTGCTTTTGAAGCTCT+TGG + chr3_2:34341662-34341681 None:intergenic 40.0%
ACCATTTCCAAACTTCTGGA+TGG - chr3_2:34341779-34341798 Msa0403770:intron 40.0%
ACCATCCAGAAGTTTGGAAA+TGG + chr3_2:34341783-34341802 None:intergenic 40.0%
GACATTGACATTGGCAGATA+TGG + chr3_2:34341826-34341845 None:intergenic 40.0%
CGTAGCCATGAGAAGAGAAT+TGG + chr3_2:34339364-34339383 None:intergenic 45.0%
CTGTAATGTGATGGTTACGG+AGG - chr3_2:34339839-34339858 Msa0403770:intron 45.0%
TGTCTGATGTTCCACAATGG+AGG - chr3_2:34339904-34339923 Msa0403770:CDS 45.0%
GCTAACTACTACCTCCATTG+TGG + chr3_2:34339918-34339937 None:intergenic 45.0%
TATCGGCAATACATGGCTGA+TGG + chr3_2:34340051-34340070 None:intergenic 45.0%
GCCATGTATTGCCGATACTT+CGG - chr3_2:34340054-34340073 Msa0403770:intron 45.0%
!! TCCGAAGTATCGGCAATACA+TGG + chr3_2:34340058-34340077 None:intergenic 45.0%
TCTTGTCTGATGTCCCACAA+TGG - chr3_2:34340084-34340103 Msa0403770:intron 45.0%
GCTAACTACTACCTCCATTG+TGG + chr3_2:34339918-34339937 None:intergenic 45.0%
ACCACAGTAGTGACACATGT+CGG + chr3_2:34340164-34340183 None:intergenic 45.0%
ATGTAAACACACGCTGACAC+AGG + chr3_2:34340344-34340363 None:intergenic 45.0%
TGACATGGATATGTCGACAC+AGG + chr3_2:34340563-34340582 None:intergenic 45.0%
GTGGTGCAGGAATCAACAAT+AGG - chr3_2:34340825-34340844 Msa0403770:intron 45.0%
GGTGCAGGAATCAACAATAG+GGG - chr3_2:34340827-34340846 Msa0403770:intron 45.0%
! TTTGAGATTTGGGACACAGC+AGG - chr3_2:34340897-34340916 Msa0403770:intron 45.0%
AATACATGGGAGCCAAGCTA+TGG + chr3_2:34340935-34340954 None:intergenic 45.0%
TTGGCTCCCATGTATTACAG+AGG - chr3_2:34340939-34340958 Msa0403770:intron 45.0%
CAAAGATTGCCCAACGAAGT+AGG + chr3_2:34341039-34341058 None:intergenic 45.0%
ATTGAGACACAACTCAGACC+TGG - chr3_2:34341257-34341276 Msa0403770:intron 45.0%
CTTCTCACGAGCTAAGAAGT+GGG - chr3_2:34341635-34341654 Msa0403770:intron 45.0%
GTCCAAGAGCTTCAAAAGCA+AGG - chr3_2:34341657-34341676 Msa0403770:intron 45.0%
!! GAAGGTACCATCCAGAAGTT+TGG + chr3_2:34341789-34341808 None:intergenic 45.0%
AACACGAGGGACATTGACAT+TGG + chr3_2:34341835-34341854 None:intergenic 45.0%
CAAGAGCCATGACCATGTTT+GGG + chr3_2:34342369-34342388 None:intergenic 45.0%
TGCTGGCAACAAATCTGACT+TGG - chr3_2:34342387-34342406 Msa0403770:intron 45.0%
!! ATCACTTTTCCTGGACCTAC+TGG - chr3_2:34342894-34342913 Msa0403770:CDS 45.0%
AGTGATAAACCAGTAGGTCC+AGG + chr3_2:34342906-34342925 None:intergenic 45.0%
CGTGTATATGCCGAGGAAAA+TGG - chr3_2:34342953-34342972 Msa0403770:five_prime_UTR 45.0%
! CTTCTTGGTGATATGGGTGC+TGG - chr3_2:34339495-34339514 Msa0403770:intron 50.0%
! GTCCGCATGTGTCATTACTG+TGG - chr3_2:34339976-34339995 Msa0403770:intron 50.0%
TGTCTGATGTCCCACAATGG+AGG - chr3_2:34340087-34340106 Msa0403770:intron 50.0%
! TCCGACATGTGTCACTACTG+TGG - chr3_2:34340160-34340179 Msa0403770:intron 50.0%
! TCAGTGGTGTCAGTGCTACA+CGG + chr3_2:34340298-34340317 None:intergenic 50.0%
!! GTAGCACTGACACCACTGAT+TGG - chr3_2:34340299-34340318 Msa0403770:intron 50.0%
CTGAACACGTCTCCAATCAG+TGG + chr3_2:34340314-34340333 None:intergenic 50.0%
AAACACACGCTGACACAGGT+TGG + chr3_2:34340340-34340359 None:intergenic 50.0%
GCACGGACACCTCTTAGATT+AGG - chr3_2:34340448-34340467 Msa0403770:intron 50.0%
ACACCGACAAGACACTGACA+TGG + chr3_2:34340578-34340597 None:intergenic 50.0%
!!! GAGCCCTGTTATTTTGTGGC+TGG - chr3_2:34340742-34340761 Msa0403770:intron 50.0%
GCTGCGCCTCTGTAATACAT+GGG + chr3_2:34340948-34340967 None:intergenic 50.0%
AGCTGCGCCTCTGTAATACA+TGG + chr3_2:34340949-34340968 None:intergenic 50.0%
! CTTTTGTCTTGTGGTTGGGC+TGG - chr3_2:34341525-34341544 Msa0403770:intron 50.0%
CCACTTCTTAGCTCGTGAGA+AGG + chr3_2:34341637-34341656 None:intergenic 50.0%
CCTTCTCACGAGCTAAGAAG+TGG - chr3_2:34341634-34341653 Msa0403770:intron 50.0%
!! TGTCTCTGGCTCTCTGTACA+TGG + chr3_2:34342034-34342053 None:intergenic 50.0%
AGGCAACCCAAACATGGTCA+TGG - chr3_2:34342360-34342379 Msa0403770:intron 50.0%
GCAAGAGCCATGACCATGTT+TGG + chr3_2:34342370-34342389 None:intergenic 50.0%
AACATGGTCATGGCTCTTGC+TGG - chr3_2:34342370-34342389 Msa0403770:intron 50.0%
TGTGTGTGTGTGTGTGTGTG+TGG - chr3_2:34342711-34342730 Msa0403770:intron 50.0%
GTGTGTGTGTGTGTGTGTGT+GGG - chr3_2:34342712-34342731 Msa0403770:intron 50.0%
GATGCCCATTGCAGCATGAT+TGG - chr3_2:34342831-34342850 Msa0403770:intron 50.0%
ATTGGCTGCAGATTTGGCAG+AGG + chr3_2:34342996-34343015 None:intergenic 50.0%
! TCTTGTGGTTGGGCTGGATC+TGG - chr3_2:34341531-34341550 Msa0403770:intron 55.0%
GCTTGCAGGCAACCCAAACA+TGG - chr3_2:34342354-34342373 Msa0403770:intron 55.0%
TGTGTGTGTGTGTGTGTGGG+TGG - chr3_2:34342719-34342738 Msa0403770:intron 55.0%
GTGTGTGTGTGTGTGTGGGT+GGG - chr3_2:34342720-34342739 Msa0403770:intron 55.0%
TGTGTGTGTGTGTGTGGGTG+GGG - chr3_2:34342721-34342740 Msa0403770:intron 55.0%
GTGGGGGCTAGGTTTCAATC+TGG - chr3_2:34342743-34342762 Msa0403770:CDS 55.0%
GGAAGCTCGTGTATATGCCG+AGG - chr3_2:34342946-34342965 Msa0403770:five_prime_UTR 55.0%
TGTGTGTGTGTGGGTGGGGT+GGG - chr3_2:34342725-34342744 Msa0403770:CDS 60.0%
TTCCTGTGTCCGACGCGCGT+CGG - chr3_2:34340474-34340493 Msa0403770:intron 65.0%
AGACAGACACCGACGCGCGT+CGG + chr3_2:34340486-34340505 None:intergenic 65.0%
GTGTGTGTGTGTGGGTGGGG+TGG - chr3_2:34342724-34342743 Msa0403770:CDS 65.0%
GTGTGTGTGTGGGTGGGGTG+GGG - chr3_2:34342726-34342745 Msa0403770:CDS 65.0%
TGTGTGTGTGGGTGGGGTGG+GGG - chr3_2:34342727-34342746 Msa0403770:CDS 65.0%
CACCGACGCGCGTCGGACAC+AGG + chr3_2:34340479-34340498 None:intergenic 75.0%
GTGTGGGTGGGGTGGGGGCT+AGG - chr3_2:34342732-34342751 Msa0403770:CDS 75.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 34339186 34343105 34339186 ID=Msa0403770;Name=Msa0403770
chr3_2 mRNA 34339186 34343105 34339186 ID=Msa0403770-mRNA-1;Parent=Msa0403770;Name=Msa0403770-mRNA-1;_AED=0.20;_eAED=0.20;_QI=189|0.8|0.66|1|1|1|6|0|188
chr3_2 exon 34339186 34339344 34339186 ID=Msa0403770-mRNA-1:exon:6849;Parent=Msa0403770-mRNA-1
chr3_2 exon 34339856 34339929 34339856 ID=Msa0403770-mRNA-1:exon:6848;Parent=Msa0403770-mRNA-1
chr3_2 exon 34340613 34340661 34340613 ID=Msa0403770-mRNA-1:exon:6847;Parent=Msa0403770-mRNA-1
chr3_2 exon 34341290 34341457 34341290 ID=Msa0403770-mRNA-1:exon:6846;Parent=Msa0403770-mRNA-1
chr3_2 exon 34342722 34342799 34342722 ID=Msa0403770-mRNA-1:exon:6845;Parent=Msa0403770-mRNA-1
chr3_2 exon 34342878 34343105 34342878 ID=Msa0403770-mRNA-1:exon:6844;Parent=Msa0403770-mRNA-1
chr3_2 five_prime_UTR 34342917 34343105 34342917 ID=Msa0403770-mRNA-1:five_prime_utr;Parent=Msa0403770-mRNA-1
chr3_2 CDS 34342878 34342916 34342878 ID=Msa0403770-mRNA-1:cds;Parent=Msa0403770-mRNA-1
chr3_2 CDS 34342722 34342799 34342722 ID=Msa0403770-mRNA-1:cds;Parent=Msa0403770-mRNA-1
chr3_2 CDS 34341290 34341457 34341290 ID=Msa0403770-mRNA-1:cds;Parent=Msa0403770-mRNA-1
chr3_2 CDS 34340613 34340661 34340613 ID=Msa0403770-mRNA-1:cds;Parent=Msa0403770-mRNA-1
chr3_2 CDS 34339856 34339929 34339856 ID=Msa0403770-mRNA-1:cds;Parent=Msa0403770-mRNA-1
chr3_2 CDS 34339186 34339344 34339186 ID=Msa0403770-mRNA-1:cds;Parent=Msa0403770-mRNA-1
Gene Sequence

>Msa0403770

ATGGCTACGATCGCACACAACAATCTCAATGCTAAATTGGTTCTTCTTGGTGATATGGGTGCTGGAAAATCTAGTCTTGTTTTAAGATTTGTCAAGGGTCAATTTCTCGAATTTCAGGAATCAACAATAGGGGCAGCATTTTTCTCTCAGACATTAGCAGTAAATGACGCAACGGTTAAATTTGAGATTTGGGACACAGCAGGACAAGAGAGATACCATAGCTTGGCTCCCATGTATTACAGAGGCGCAGCTGCTGCTATAATTGTCTATGACATCACTAGCTCAGATTCCTTCTCACGAGCTAAGAAGTGGGTCCAAGAGCTTCAAAAGCAAGGCAACCCAAACATGGTCATGGCTCTTGCTGGCAACAAATCTGACTTGGAAGATAAAAGAAAAGTGACAGCCGAAGAAGCTCGTGTATATGCCGAGGAAAATGGTTTGTTTTTCATGGAGACCTCTGCCAAATCTGCAGCCAATGTTAATGATGTATTTTATGAAATAGGTGAGTCAATTCCTATTATATATGCTTTAATCTGCAGAAAATGGTCTTATTTTATTCTTGGTTGA
Protein sequence

>Msa0403770

MATIAHNNLNAKLVLLGDMGAGKSSLVLRFVKGQFLEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITSSDSFSRAKKWVQELQKQGNPNMVMALAGNKSDLEDKRKVTAEEARVYAEENGLFFMETSAKSAANVNDVFYEIGESIPIIYALICRKWSYFILG*