AlfalfaGEDB | Msa0645150

M. sativa cultivar zhongmu-4 / Msa0645150

KEGG: K14686
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
PFAM: PF04145.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0645150	XP_003606781.2	97.386	153	4	0	1	153	1	153	1.34e-103	303

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0645150	sp\|Q8GWP3\|COPT6_ARATH	52.381	147	57	5	5	145	1	140	2.70e-39	132

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0034620	Msa0645150	0.801006	1.103601e-48	-8.615850e-47
Msa0034770	Msa0645150	0.807087	5.999454e-50	-8.615850e-47
Msa0045850	Msa0645150	0.801350	9.385479e-49	-8.615850e-47
Msa0048950	Msa0645150	0.810857	9.358835e-51	-8.615850e-47
Msa0059880	Msa0645150	0.837314	5.591817e-57	-8.615850e-47
Msa0069480	Msa0645150	0.809399	1.928950e-50	-8.615850e-47
Msa0072030	Msa0645150	0.805837	1.100690e-49	-8.615850e-47
Msa0074620	Msa0645150	0.832660	8.329128e-56	-8.615850e-47
Msa0084160	Msa0645150	0.805721	1.164382e-49	-8.615850e-47
Msa0121910	Msa0645150	0.812514	4.080498e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0645150	MtrunA17_Chr4g0032581	97.386	153	4	0	1	153	1	153	1.23e-107	303
Msa0645150	MtrunA17_Chr4g0032291	80.833	120	22	1	35	153	46	165	6.00e-63	190
Msa0645150	MtrunA17_Chr4g0032571	73.333	135	34	2	9	142	4	137	3.24e-56	172
Msa0645150	MtrunA17_Chr7g0240831	45.455	143	70	4	8	147	2	139	4.50e-35	119
Msa0645150	MtrunA17_Chr7g0240841	45.455	143	70	4	8	147	2	139	4.50e-35	119
Msa0645150	MtrunA17_Chr4g0008841	45.217	115	62	1	32	145	13	127	5.88e-32	110
Msa0645150	MtrunA17_Chr7g0240861	50.427	117	55	2	17	130	12	128	2.10e-30	107
Msa0645150	MtrunA17_Chr1g0150721	38.095	126	57	5	31	135	1	126	5.40e-17	72.8
Msa0645150	MtrunA17_Chr3g0136431	34.375	128	60	3	31	134	1	128	5.63e-14	65.1

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0645150	AT2G26975.1	52.381	147	57	5	5	145	1	140	2.74e-40	132
Msa0645150	AT5G59030.1	44.643	168	78	5	1	153	1	168	1.88e-33	116
Msa0645150	AT3G46900.1	48.760	121	58	3	36	152	34	154	2.91e-32	112
Msa0645150	AT5G59040.1	44.262	122	67	1	30	150	28	149	5.41e-29	104
Msa0645150	AT2G37925.1	42.982	114	61	2	30	139	28	141	1.54e-25	95.1
Msa0645150	AT5G20650.1	37.692	130	55	4	31	134	1	130	1.20e-14	67.0

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Find 41 sgRNAs with CRISPR-Local

Find 42 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTCGATGAGTATGGACA+TGG	0.667480	4_3:+49622078	None:intergenic
AACTGATACAGCATGGATCA+TGG	0.527414	4_3:-49622286	None:intergenic
AATAATTAACAAGATAACGG+AGG	0.670863	4_3:+49621830	None:intergenic
AATTGGCCTGCTGGTAGTTC+TGG	0.393131	4_3:-49622133	Msa0645150:CDS
ACCAATGACACTATGATGAT+GGG	0.572192	4_3:-49622220	Msa0645150:CDS
ACCCATCATCATAGTGTCAT+TGG	0.428445	4_3:+49622219	None:intergenic
ACCCGGTTCAAACCCTGTTG+TGG	0.557595	4_3:-49622032	Msa0645150:CDS
AGCACCCGGTTCATTAAACC+CGG	0.579765	4_3:-49622049	Msa0645150:CDS
ATACAGCATGGATCATGGCA+TGG	0.657843	4_3:-49622281	None:intergenic
ATGCACATGACATTCTTCTG+CGG	0.705097	4_3:-49622181	Msa0645150:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TACCAATGACACTATGATGA+TGG	-	chr4_3:49621888-49621907	Msa0645150:CDS	35.0%
ACCAATGACACTATGATGAT+GGG	-	chr4_3:49621889-49621908	Msa0645150:CDS	35.0%
CCAACATAACCAAATAAGCT+AGG	+	chr4_3:49622143-49622162	None:intergenic	35.0%
CCTAGCTTATTTGGTTATGT+TGG	-	chr4_3:49622140-49622159	Msa0645150:CDS	35.0%
TCGAAATTCTCATCTTGATG+TGG	+	chr4_3:49622255-49622274	None:intergenic	35.0%
ACCCATCATCATAGTGTCAT+TGG	+	chr4_3:49621893-49621912	None:intergenic	40.0%
ATGCACATGACATTCTTCTG+CGG	-	chr4_3:49621928-49621947	Msa0645150:CDS	40.0%
AAACTCGATGAGTATGGACA+TGG	+	chr4_3:49622034-49622053	None:intergenic	40.0%
TGAGAGAAACTCGATGAGTA+TGG	+	chr4_3:49622040-49622059	None:intergenic	40.0%
TTGAACCGGGTTTAATGAAC+CGG	+	chr4_3:49622068-49622087	None:intergenic	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_3	gene	49621835	49622296	49621835	ID=Msa0645150;Name=Msa0645150
chr4_3	mRNA	49621835	49622296	49621835	ID=Msa0645150-mRNA-1;Parent=Msa0645150;Name=Msa0645150-mRNA-1;_AED=0.24;_eAED=0.24;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|153
chr4_3	exon	49621835	49622296	49621835	ID=Msa0645150-mRNA-1:exon:11859;Parent=Msa0645150-mRNA-1
chr4_3	CDS	49621835	49622296	49621835	ID=Msa0645150-mRNA-1:cds;Parent=Msa0645150-mRNA-1

Gene Sequence

>Msa0645150

ATGGATCATGGCATGGATCATGGAATGGCAATGGCACCAAAGTCATCATCATCTACCAATGACACTATGATGATGGGTCAGATGCATGACATGATGCACATGACATTCTTCTGCGGTAAAGATGCATTGATTCTCTTTGACAATTGGCCTGCTGGTAGTTCTGGTAAGTATGTATTGGCCTTGATCCTTGTTTTCGCCATGTCCATACTCATCGAGTTTCTCTCAAGCACCCGGTTCATTAAACCCGGTTCAAACCCTGTTGTGGCCGGTCTAGTTCAGACACTTTTGCATGTTCTTAGGGTTGGCCTAGCTTATTTGGTTATGTTGGCTCTCATGTCTTTCAATGGTGGAGTGTTCTTGGTTGCTGTGCTTGGTCATGCTGTTGGGTTCTTCTTTCGTAGCCGTGCTTTCAAAAAACCACATCAAGATGAGAATTTCGATCTTCCTCCGTTATCTTGTTAA

Protein sequence

>Msa0645150

MDHGMDHGMAMAPKSSSSTNDTMMMGQMHDMMHMTFFCGKDALILFDNWPAGSSGKYVLALILVFAMSILIEFLSSTRFIKPGSNPVVAGLVQTLLHVLRVGLAYLVMLALMSFNGGVFLVAVLGHAVGFFFRSRAFKKPHQDENFDLPPLSC*