Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0645150 | XP_003606781.2 | 97.386 | 153 | 4 | 0 | 1 | 153 | 1 | 153 | 1.34e-103 | 303 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0645150 | sp|Q8GWP3|COPT6_ARATH | 52.381 | 147 | 57 | 5 | 5 | 145 | 1 | 140 | 2.70e-39 | 132 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0034620 | Msa0645150 | 0.801006 | 1.103601e-48 | -8.615850e-47 |
| Msa0034770 | Msa0645150 | 0.807087 | 5.999454e-50 | -8.615850e-47 |
| Msa0045850 | Msa0645150 | 0.801350 | 9.385479e-49 | -8.615850e-47 |
| Msa0048950 | Msa0645150 | 0.810857 | 9.358835e-51 | -8.615850e-47 |
| Msa0059880 | Msa0645150 | 0.837314 | 5.591817e-57 | -8.615850e-47 |
| Msa0069480 | Msa0645150 | 0.809399 | 1.928950e-50 | -8.615850e-47 |
| Msa0072030 | Msa0645150 | 0.805837 | 1.100690e-49 | -8.615850e-47 |
| Msa0074620 | Msa0645150 | 0.832660 | 8.329128e-56 | -8.615850e-47 |
| Msa0084160 | Msa0645150 | 0.805721 | 1.164382e-49 | -8.615850e-47 |
| Msa0605410 | Msa0645150 | 0.819083 | 1.398776e-52 | -8.615850e-47 |
| Msa0605470 | Msa0645150 | 0.819517 | 1.113972e-52 | -8.615850e-47 |
| Msa0631700 | Msa0645150 | 0.842208 | 2.976013e-58 | -8.615850e-47 |
| Msa0634290 | Msa0645150 | 0.802363 | 5.812164e-49 | -8.615850e-47 |
| Msa0640290 | Msa0645150 | 0.818834 | 1.593757e-52 | -8.615850e-47 |
| Msa0643840 | Msa0645150 | 0.851606 | 7.954541e-61 | -8.615850e-47 |
| Msa0645150 | Msa0650310 | 0.807498 | 4.908924e-50 | -8.615850e-47 |
| Msa0645150 | Msa0655430 | 0.804710 | 1.895998e-49 | -8.615850e-47 |
| Msa0645150 | Msa0670360 | 0.861692 | 8.581007e-64 | -8.615850e-47 |
| Msa0645150 | Msa0671490 | 0.818174 | 2.249037e-52 | -8.615850e-47 |
| Msa0645150 | Msa0678620 | 0.831801 | 1.358431e-55 | -8.615850e-47 |
| Msa0645150 | Msa0684620 | 0.811380 | 7.206916e-51 | -8.615850e-47 |
| Msa0645150 | Msa0711230 | 0.824626 | 7.290353e-54 | -8.615850e-47 |
| Msa0645150 | Msa0711240 | 0.822840 | 1.909540e-53 | -8.615850e-47 |
| Msa0645150 | Msa0727480 | 0.853139 | 2.910648e-61 | -8.615850e-47 |
| Msa0645150 | Msa0735130 | 0.829997 | 3.763684e-55 | -8.615850e-47 |
| Msa0645150 | Msa0768670 | 0.827854 | 1.243057e-54 | -8.615850e-47 |
| Msa0645150 | Msa0768720 | 0.828400 | 9.183424e-55 | -8.615850e-47 |
| Msa0645150 | Msa0777070 | 0.801903 | 7.229141e-49 | -8.615850e-47 |
| Msa0645150 | Msa0787860 | 0.808694 | 2.730446e-50 | -8.615850e-47 |
| Msa0645150 | Msa0814160 | 0.816830 | 4.516717e-52 | -8.615850e-47 |
| Msa0645150 | Msa0816140 | 0.827213 | 1.771589e-54 | -8.615850e-47 |
| Msa0645150 | Msa0824850 | 0.830541 | 2.771635e-55 | -8.615850e-47 |
| Msa0645150 | Msa0824860 | 0.831617 | 1.508358e-55 | -8.615850e-47 |
| Msa0645150 | Msa0841170 | 0.805711 | 1.170077e-49 | -8.615850e-47 |
| Msa0645150 | Msa0854840 | 0.819952 | 8.862721e-53 | -8.615850e-47 |
| Msa0645150 | Msa0863840 | 0.819727 | 9.975236e-53 | -8.615850e-47 |
| Msa0645150 | Msa0863850 | 0.809605 | 1.742194e-50 | -8.615850e-47 |
| Msa0645150 | Msa0863860 | 0.811464 | 6.910183e-51 | -8.615850e-47 |
| Msa0645150 | Msa0864160 | 0.830068 | 3.615520e-55 | -8.615850e-47 |
| Msa0645150 | Msa0867080 | 0.803746 | 3.009759e-49 | -8.615850e-47 |
| Msa0645150 | Msa0883640 | 0.846486 | 2.107455e-59 | -8.615850e-47 |
| Msa0645150 | Msa0893840 | 0.809174 | 2.155498e-50 | -8.615850e-47 |
| Msa0645150 | Msa0896920 | 0.811310 | 7.463532e-51 | -8.615850e-47 |
| Msa0645150 | Msa0910830 | 0.851034 | 1.154121e-60 | -8.615850e-47 |
| Msa0645150 | Msa0941120 | 0.819265 | 1.271963e-52 | -8.615850e-47 |
| Msa0645150 | Msa0960090 | 0.846012 | 2.836777e-59 | -8.615850e-47 |
| Msa0645150 | Msa0967820 | 0.810016 | 1.421087e-50 | -8.615850e-47 |
| Msa0645150 | Msa0971880 | 0.801319 | 9.524751e-49 | -8.615850e-47 |
| Msa0645150 | Msa0985700 | 0.846985 | 1.539743e-59 | -8.615850e-47 |
| Msa0645150 | Msa1003110 | 0.816896 | 4.365533e-52 | -8.615850e-47 |
| Msa0645150 | Msa1006170 | 0.803435 | 3.491097e-49 | -8.615850e-47 |
| Msa0645150 | Msa1021620 | 0.831748 | 1.399984e-55 | -8.615850e-47 |
| Msa0645150 | Msa1022490 | 0.821722 | 3.471008e-53 | -8.615850e-47 |
| Msa0645150 | Msa1022510 | 0.826580 | 2.509392e-54 | -8.615850e-47 |
| Msa0645150 | Msa1024350 | 0.818455 | 1.942618e-52 | -8.615850e-47 |
| Msa0645150 | Msa1026050 | 0.855611 | 5.616184e-62 | -8.615850e-47 |
| Msa0645150 | Msa1036590 | 0.800524 | 1.384213e-48 | -8.615850e-47 |
| Msa0645150 | Msa1037350 | 0.814397 | 1.572804e-51 | -8.615850e-47 |
| Msa0645150 | Msa1041630 | 0.815590 | 8.550927e-52 | -8.615850e-47 |
| Msa0645150 | Msa1061670 | 0.862058 | 6.630532e-64 | -8.615850e-47 |
| Msa0645150 | Msa1064940 | 0.815218 | 1.034492e-51 | -8.615850e-47 |
| Msa0645150 | Msa1076830 | 0.845337 | 4.324239e-59 | -8.615850e-47 |
| Msa0645150 | Msa1076900 | 0.802450 | 5.577359e-49 | -8.615850e-47 |
| Msa0645150 | Msa1081610 | 0.844088 | 9.388578e-59 | -8.615850e-47 |
| Msa0645150 | Msa1087380 | 0.805070 | 1.593983e-49 | -8.615850e-47 |
| Msa0645150 | Msa1091000 | 0.820849 | 5.518989e-53 | -8.615850e-47 |
| Msa0645150 | Msa1098100 | 0.813055 | 3.105743e-51 | -8.615850e-47 |
| Msa0645150 | Msa1104960 | 0.834846 | 2.366011e-56 | -8.615850e-47 |
| Msa0645150 | Msa1106680 | 0.820600 | 6.294936e-53 | -8.615850e-47 |
| Msa0645150 | Msa1106960 | 0.865005 | 8.077258e-65 | -8.615850e-47 |
| Msa0645150 | Msa1109540 | 0.804646 | 1.954906e-49 | -8.615850e-47 |
| Msa0645150 | Msa1109880 | 0.834129 | 3.583296e-56 | -8.615850e-47 |
| Msa0645150 | Msa1109890 | 0.834700 | 2.575656e-56 | -8.615850e-47 |
| Msa0645150 | Msa1123010 | 0.814942 | 1.191657e-51 | -8.615850e-47 |
| Msa0645150 | Msa1133860 | 0.812507 | 4.095716e-51 | -8.615850e-47 |
| Msa0645150 | Msa1138110 | 0.808898 | 2.469483e-50 | -8.615850e-47 |
| Msa0645150 | Msa1147030 | 0.807643 | 4.572445e-50 | -8.615850e-47 |
| Msa0645150 | Msa1149020 | 0.811499 | 6.790158e-51 | -8.615850e-47 |
| Msa0645150 | Msa1164240 | 0.814730 | 1.327897e-51 | -8.615850e-47 |
| Msa0645150 | Msa1166530 | 0.820214 | 7.718890e-53 | -8.615850e-47 |
| Msa0645150 | Msa1170340 | 0.829189 | 5.915854e-55 | -8.615850e-47 |
| Msa0645150 | Msa1191270 | 0.804502 | 2.094493e-49 | -8.615850e-47 |
| Msa0645150 | Msa1238440 | 0.804691 | 1.913284e-49 | -8.615850e-47 |
| Msa0645150 | Msa1286420 | 0.819135 | 1.361150e-52 | -8.615850e-47 |
| Msa0645150 | Msa1300610 | 0.814920 | 1.204954e-51 | -8.615850e-47 |
| Msa0645150 | Msa1319290 | 0.801357 | 9.355594e-49 | -8.615850e-47 |
| Msa0645150 | Msa1321250 | 0.806640 | 7.458434e-50 | -8.615850e-47 |
| Msa0645150 | Msa1323160 | 0.806983 | 6.309445e-50 | -8.615850e-47 |
| Msa0645150 | Msa1329740 | 0.808072 | 3.706978e-50 | -8.615850e-47 |
| Msa0645150 | Msa1355330 | 0.816864 | 4.438408e-52 | -8.615850e-47 |
| Msa0645150 | Msa1355340 | 0.818793 | 1.628152e-52 | -8.615850e-47 |
| Msa0645150 | Msa1357490 | 0.808050 | 3.746906e-50 | -8.615850e-47 |
| Msa0645150 | Msa1357750 | 0.809578 | 1.765403e-50 | -8.615850e-47 |
| Msa0645150 | Msa1376070 | 0.851308 | 9.657466e-61 | -8.615850e-47 |
| Msa0645150 | Msa1377460 | 0.804949 | 1.689356e-49 | -8.615850e-47 |
| Msa0645150 | Msa1377520 | 0.818399 | 2.000931e-52 | -8.615850e-47 |
| Msa0645150 | Msa1386120 | 0.802480 | 5.499950e-49 | -8.615850e-47 |
| Msa0645150 | Msa1393440 | 0.808193 | 3.492858e-50 | -8.615850e-47 |
| Msa0645150 | Msa1395150 | 0.818031 | 2.422701e-52 | -8.615850e-47 |
| Msa0645150 | Msa1411550 | 0.840463 | 8.567050e-58 | -8.615850e-47 |
| Msa0645150 | Msa1413090 | 0.827979 | 1.159702e-54 | -8.615850e-47 |
| Msa0645150 | Msa1427670 | 0.802284 | 6.034557e-49 | -8.615850e-47 |
| Msa0645150 | Msa1456600 | 0.845136 | 4.900286e-59 | -8.615850e-47 |
| Msa0645150 | Msa1459610 | 0.829642 | 4.591151e-55 | -8.615850e-47 |
| Msa0121910 | Msa0645150 | 0.812514 | 4.080498e-51 | -8.615850e-47 |
| Msa0129850 | Msa0645150 | 0.823093 | 1.667374e-53 | -8.615850e-47 |
| Msa0131460 | Msa0645150 | 0.810956 | 8.904874e-51 | -8.615850e-47 |
| Msa0139460 | Msa0645150 | 0.804242 | 2.372637e-49 | -8.615850e-47 |
| Msa0143680 | Msa0645150 | 0.804269 | 2.342659e-49 | -8.615850e-47 |
| Msa0143710 | Msa0645150 | 0.815267 | 1.008998e-51 | -8.615850e-47 |
| Msa0143740 | Msa0645150 | 0.808026 | 3.790745e-50 | -8.615850e-47 |
| Msa0143770 | Msa0645150 | 0.808244 | 3.406905e-50 | -8.615850e-47 |
| Msa0150910 | Msa0645150 | 0.825746 | 3.962094e-54 | -8.615850e-47 |
| Msa0155850 | Msa0645150 | 0.825913 | 3.617364e-54 | -8.615850e-47 |
| Msa0163340 | Msa0645150 | 0.814147 | 1.786608e-51 | -8.615850e-47 |
| Msa0170760 | Msa0645150 | 0.801435 | 9.017866e-49 | -8.615850e-47 |
| Msa0170990 | Msa0645150 | 0.830820 | 2.368156e-55 | -8.615850e-47 |
| Msa0177550 | Msa0645150 | 0.811155 | 8.065283e-51 | -8.615850e-47 |
| Msa0210850 | Msa0645150 | 0.806441 | 8.212072e-50 | -8.615850e-47 |
| Msa0223880 | Msa0645150 | 0.800181 | 1.625943e-48 | -8.615850e-47 |
| Msa0366510 | Msa0645150 | 0.828263 | 9.905961e-55 | -8.615850e-47 |
| Msa0374040 | Msa0645150 | 0.805080 | 1.586417e-49 | -8.615850e-47 |
| Msa0374130 | Msa0645150 | 0.802092 | 6.609851e-49 | -8.615850e-47 |
| Msa0396700 | Msa0645150 | 0.813124 | 3.000443e-51 | -8.615850e-47 |
| Msa0397190 | Msa0645150 | 0.808046 | 3.754457e-50 | -8.615850e-47 |
| Msa0409490 | Msa0645150 | 0.810576 | 1.076052e-50 | -8.615850e-47 |
| Msa0414480 | Msa0645150 | 0.840066 | 1.087350e-57 | -8.615850e-47 |
| Msa0418160 | Msa0645150 | 0.824996 | 5.964268e-54 | -8.615850e-47 |
| Msa0444250 | Msa0645150 | 0.822003 | 2.988052e-53 | -8.615850e-47 |
| Msa0464300 | Msa0645150 | 0.812921 | 3.323118e-51 | -8.615850e-47 |
| Msa0464310 | Msa0645150 | 0.808133 | 3.596854e-50 | -8.615850e-47 |
| Msa0469550 | Msa0645150 | 0.809108 | 2.226785e-50 | -8.615850e-47 |
| Msa0243990 | Msa0645150 | 0.801570 | 8.460291e-49 | -8.615850e-47 |
| Msa0259110 | Msa0645150 | 0.861198 | 1.213753e-63 | -8.615850e-47 |
| Msa0259300 | Msa0645150 | 0.835262 | 1.858794e-56 | -8.615850e-47 |
| Msa0265060 | Msa0645150 | 0.801213 | 1.001170e-48 | -8.615850e-47 |
| Msa0269720 | Msa0645150 | 0.808023 | 3.796530e-50 | -8.615850e-47 |
| Msa0274250 | Msa0645150 | 0.802098 | 6.590004e-49 | -8.615850e-47 |
| Msa0278460 | Msa0645150 | 0.831379 | 1.726219e-55 | -8.615850e-47 |
| Msa0278940 | Msa0645150 | 0.808866 | 2.509079e-50 | -8.615850e-47 |
| Msa0278950 | Msa0645150 | 0.802783 | 4.763116e-49 | -8.615850e-47 |
| Msa0291750 | Msa0645150 | 0.828745 | 7.579062e-55 | -8.615850e-47 |
| Msa0298270 | Msa0645150 | 0.809271 | 2.054710e-50 | -8.615850e-47 |
| Msa0316600 | Msa0645150 | 0.803329 | 3.672655e-49 | -8.615850e-47 |
| Msa0342130 | Msa0645150 | 0.856943 | 2.284609e-62 | -8.615850e-47 |
| Msa0342160 | Msa0645150 | 0.839911 | 1.193555e-57 | -8.615850e-47 |
| Msa0343720 | Msa0645150 | 0.823613 | 1.260813e-53 | -8.615850e-47 |
| Msa0349910 | Msa0645150 | 0.803999 | 2.665937e-49 | -8.615850e-47 |
| Msa0491770 | Msa0645150 | 0.822190 | 2.704047e-53 | -8.615850e-47 |
| Msa0491800 | Msa0645150 | 0.816754 | 4.698975e-52 | -8.615850e-47 |
| Msa0515130 | Msa0645150 | 0.815851 | 7.478650e-52 | -8.615850e-47 |
| Msa0515150 | Msa0645150 | 0.808734 | 2.677807e-50 | -8.615850e-47 |
| Msa0515260 | Msa0645150 | 0.803948 | 2.731648e-49 | -8.615850e-47 |
| Msa0535570 | Msa0645150 | 0.857280 | 1.817739e-62 | -8.615850e-47 |
| Msa0538440 | Msa0645150 | 0.802035 | 6.790623e-49 | -8.615850e-47 |
| Msa0538450 | Msa0645150 | 0.818967 | 1.487022e-52 | -8.615850e-47 |
| Msa0538520 | Msa0645150 | 0.807838 | 4.156244e-50 | -8.615850e-47 |
| Msa0538530 | Msa0645150 | 0.801201 | 1.006625e-48 | -8.615850e-47 |
| Msa0543740 | Msa0645150 | 0.828423 | 9.066617e-55 | -8.615850e-47 |
| Msa0548820 | Msa0645150 | 0.842609 | 2.329723e-58 | -8.615850e-47 |
| Msa0549930 | Msa0645150 | 0.801552 | 8.531409e-49 | -8.615850e-47 |
| Msa0579530 | Msa0645150 | 0.836052 | 1.173240e-56 | -8.615850e-47 |
| Msa0591490 | Msa0645150 | 0.842070 | 3.236080e-58 | -8.615850e-47 |
| Msa0594330 | Msa0645150 | 0.815338 | 9.730308e-52 | -8.615850e-47 |
| Msa0599600 | Msa0645150 | 0.813327 | 2.706832e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0645150 | MtrunA17_Chr4g0032581 | 97.386 | 153 | 4 | 0 | 1 | 153 | 1 | 153 | 1.23e-107 | 303 |
| Msa0645150 | MtrunA17_Chr4g0032291 | 80.833 | 120 | 22 | 1 | 35 | 153 | 46 | 165 | 6.00e-63 | 190 |
| Msa0645150 | MtrunA17_Chr4g0032571 | 73.333 | 135 | 34 | 2 | 9 | 142 | 4 | 137 | 3.24e-56 | 172 |
| Msa0645150 | MtrunA17_Chr7g0240831 | 45.455 | 143 | 70 | 4 | 8 | 147 | 2 | 139 | 4.50e-35 | 119 |
| Msa0645150 | MtrunA17_Chr7g0240841 | 45.455 | 143 | 70 | 4 | 8 | 147 | 2 | 139 | 4.50e-35 | 119 |
| Msa0645150 | MtrunA17_Chr4g0008841 | 45.217 | 115 | 62 | 1 | 32 | 145 | 13 | 127 | 5.88e-32 | 110 |
| Msa0645150 | MtrunA17_Chr7g0240861 | 50.427 | 117 | 55 | 2 | 17 | 130 | 12 | 128 | 2.10e-30 | 107 |
| Msa0645150 | MtrunA17_Chr1g0150721 | 38.095 | 126 | 57 | 5 | 31 | 135 | 1 | 126 | 5.40e-17 | 72.8 |
| Msa0645150 | MtrunA17_Chr3g0136431 | 34.375 | 128 | 60 | 3 | 31 | 134 | 1 | 128 | 5.63e-14 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0645150 | AT2G26975.1 | 52.381 | 147 | 57 | 5 | 5 | 145 | 1 | 140 | 2.74e-40 | 132 |
| Msa0645150 | AT5G59030.1 | 44.643 | 168 | 78 | 5 | 1 | 153 | 1 | 168 | 1.88e-33 | 116 |
| Msa0645150 | AT3G46900.1 | 48.760 | 121 | 58 | 3 | 36 | 152 | 34 | 154 | 2.91e-32 | 112 |
| Msa0645150 | AT5G59040.1 | 44.262 | 122 | 67 | 1 | 30 | 150 | 28 | 149 | 5.41e-29 | 104 |
| Msa0645150 | AT2G37925.1 | 42.982 | 114 | 61 | 2 | 30 | 139 | 28 | 141 | 1.54e-25 | 95.1 |
| Msa0645150 | AT5G20650.1 | 37.692 | 130 | 55 | 4 | 31 | 134 | 1 | 130 | 1.20e-14 | 67.0 |
Find 41 sgRNAs with CRISPR-Local
Find 42 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAGGGTTGGCCTAGCTTATT+TGG | 0.201432 | 4_3:-49621978 | Msa0645150:CDS |
| TTTCAATGGTGGAGTGTTCT+TGG | 0.286706 | 4_3:-49621936 | Msa0645150:CDS |
| CATTGATTCTCTTTGACAAT+TGG | 0.313757 | 4_3:-49622150 | Msa0645150:CDS |
| CTGTGCTTGGTCATGCTGTT+GGG | 0.361371 | 4_3:-49621910 | Msa0645150:CDS |
| CCTAGCTTATTTGGTTATGT+TGG | 0.373927 | 4_3:-49621969 | Msa0645150:CDS |
| CTCTTTGACAATTGGCCTGC+TGG | 0.377320 | 4_3:-49622142 | Msa0645150:CDS |
| TGAACTAGACCGGCCACAAC+AGG | 0.384941 | 4_3:+49622019 | None:intergenic |
| GGCCACAACAGGGTTTGAAC+CGG | 0.386419 | 4_3:+49622030 | None:intergenic |
| GCTGTGCTTGGTCATGCTGT+TGG | 0.390679 | 4_3:-49621911 | Msa0645150:CDS |
| AATTGGCCTGCTGGTAGTTC+TGG | 0.393131 | 4_3:-49622133 | Msa0645150:CDS |
| TGAGAGAAACTCGATGAGTA+TGG | 0.396012 | 4_3:+49622072 | None:intergenic |
| GTGTTCTTGGTTGCTGTGCT+TGG | 0.406869 | 4_3:-49621923 | Msa0645150:CDS |
| TTGAACCGGGTTTAATGAAC+CGG | 0.410106 | 4_3:+49622044 | None:intergenic |
| ACCCATCATCATAGTGTCAT+TGG | 0.428445 | 4_3:+49622219 | None:intergenic |
| TTGGCTCTCATGTCTTTCAA+TGG | 0.439850 | 4_3:-49621950 | Msa0645150:CDS |
| TACCAATGACACTATGATGA+TGG | 0.457064 | 4_3:-49622221 | Msa0645150:CDS |
| GCCACAACAGGGTTTGAACC+GGG | 0.512994 | 4_3:+49622031 | None:intergenic |
| ATGGATCATGGCATGGATCA+TGG | 0.518842 | 4_3:-49622274 | Msa0645150:CDS |
| GCTCTCATGTCTTTCAATGG+TGG | 0.527046 | 4_3:-49621947 | Msa0645150:CDS |
| AACTGATACAGCATGGATCA+TGG | 0.527414 | 4_3:-49622286 | None:intergenic |
| TAGTTCTGGTAAGTATGTAT+TGG | 0.530240 | 4_3:-49622119 | Msa0645150:CDS |
| GGTTCAAACCCTGTTGTGGC+CGG | 0.535871 | 4_3:-49622028 | Msa0645150:CDS |
| TTGGTAGATGATGATGACTT+TGG | 0.542496 | 4_3:+49622238 | None:intergenic |
| CCAACATAACCAAATAAGCT+AGG | 0.547948 | 4_3:+49621969 | None:intergenic |
| TCGAAATTCTCATCTTGATG+TGG | 0.556567 | 4_3:+49621857 | None:intergenic |
| ACCCGGTTCAAACCCTGTTG+TGG | 0.557595 | 4_3:-49622032 | Msa0645150:CDS |
| TCGAGTTTCTCTCAAGCACC+CGG | 0.561462 | 4_3:-49622063 | Msa0645150:CDS |
| CAAAAGTGTCTGAACTAGAC+CGG | 0.563621 | 4_3:+49622009 | None:intergenic |
| ACCAATGACACTATGATGAT+GGG | 0.572192 | 4_3:-49622220 | Msa0645150:CDS |
| CATGGCGAAAACAAGGATCA+AGG | 0.574469 | 4_3:+49622096 | None:intergenic |
| AGCACCCGGTTCATTAAACC+CGG | 0.579765 | 4_3:-49622049 | Msa0645150:CDS |
| TGAACCGGGTTTAATGAACC+GGG | 0.596910 | 4_3:+49622045 | None:intergenic |
| GTATGGACATGGCGAAAACA+AGG | 0.607210 | 4_3:+49622089 | None:intergenic |
| TCATGGCATGGATCATGGAA+TGG | 0.632980 | 4_3:-49622269 | Msa0645150:CDS |
| TACTTACCAGAACTACCAGC+AGG | 0.638786 | 4_3:+49622127 | None:intergenic |
| CATGGATCATGGAATGGCAA+TGG | 0.647968 | 4_3:-49622263 | Msa0645150:CDS |
| ATACAGCATGGATCATGGCA+TGG | 0.657843 | 4_3:-49622281 | None:intergenic |
| AAACTCGATGAGTATGGACA+TGG | 0.667480 | 4_3:+49622078 | None:intergenic |
| GAACTAGACCGGCCACAACA+GGG | 0.667595 | 4_3:+49622020 | None:intergenic |
| AATAATTAACAAGATAACGG+AGG | 0.670863 | 4_3:+49621830 | None:intergenic |
| ATGCACATGACATTCTTCTG+CGG | 0.705097 | 4_3:-49622181 | Msa0645150:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CATTGATTCTCTTTGACAAT+TGG | - | chr4_3:49621959-49621978 | Msa0645150:CDS | 30.0% |
| !! | TAGTTCTGGTAAGTATGTAT+TGG | - | chr4_3:49621990-49622009 | Msa0645150:CDS | 30.0% |
| ! | TTGGTAGATGATGATGACTT+TGG | + | chr4_3:49621874-49621893 | None:intergenic | 35.0% |
| TACCAATGACACTATGATGA+TGG | - | chr4_3:49621888-49621907 | Msa0645150:CDS | 35.0% | |
| ACCAATGACACTATGATGAT+GGG | - | chr4_3:49621889-49621908 | Msa0645150:CDS | 35.0% | |
| ! | AGACACTTTTGCATGTTCTT+AGG | - | chr4_3:49622112-49622131 | Msa0645150:CDS | 35.0% |
| ! | GACACTTTTGCATGTTCTTA+GGG | - | chr4_3:49622113-49622132 | Msa0645150:CDS | 35.0% |
| CCAACATAACCAAATAAGCT+AGG | + | chr4_3:49622143-49622162 | None:intergenic | 35.0% | |
| CCTAGCTTATTTGGTTATGT+TGG | - | chr4_3:49622140-49622159 | Msa0645150:CDS | 35.0% | |
| !!! | GATGTGGTTTTTTGAAAGCA+CGG | + | chr4_3:49622239-49622258 | None:intergenic | 35.0% |
| TCGAAATTCTCATCTTGATG+TGG | + | chr4_3:49622255-49622274 | None:intergenic | 35.0% | |
| ACCCATCATCATAGTGTCAT+TGG | + | chr4_3:49621893-49621912 | None:intergenic | 40.0% | |
| ATGCACATGACATTCTTCTG+CGG | - | chr4_3:49621928-49621947 | Msa0645150:CDS | 40.0% | |
| AAACTCGATGAGTATGGACA+TGG | + | chr4_3:49622034-49622053 | None:intergenic | 40.0% | |
| TGAGAGAAACTCGATGAGTA+TGG | + | chr4_3:49622040-49622059 | None:intergenic | 40.0% | |
| TTGAACCGGGTTTAATGAAC+CGG | + | chr4_3:49622068-49622087 | None:intergenic | 40.0% | |
| !! | CAAAAGTGTCTGAACTAGAC+CGG | + | chr4_3:49622103-49622122 | None:intergenic | 40.0% |
| ! | CTTTTGCATGTTCTTAGGGT+TGG | - | chr4_3:49622117-49622136 | Msa0645150:CDS | 40.0% |
| ! | TTGGCTCTCATGTCTTTCAA+TGG | - | chr4_3:49622159-49622178 | Msa0645150:CDS | 40.0% |
| ! | TTTCAATGGTGGAGTGTTCT+TGG | - | chr4_3:49622173-49622192 | Msa0645150:CDS | 40.0% |
| ATGGATCATGGCATGGATCA+TGG | - | chr4_3:49621835-49621854 | Msa0645150:CDS | 45.0% | |
| TCATGGCATGGATCATGGAA+TGG | - | chr4_3:49621840-49621859 | Msa0645150:CDS | 45.0% | |
| CATGGATCATGGAATGGCAA+TGG | - | chr4_3:49621846-49621865 | Msa0645150:CDS | 45.0% | |
| TACTTACCAGAACTACCAGC+AGG | + | chr4_3:49621985-49622004 | None:intergenic | 45.0% | |
| CATGGCGAAAACAAGGATCA+AGG | + | chr4_3:49622016-49622035 | None:intergenic | 45.0% | |
| GTATGGACATGGCGAAAACA+AGG | + | chr4_3:49622023-49622042 | None:intergenic | 45.0% | |
| TGAACCGGGTTTAATGAACC+GGG | + | chr4_3:49622067-49622086 | None:intergenic | 45.0% | |
| !! | TAGGGTTGGCCTAGCTTATT+TGG | - | chr4_3:49622131-49622150 | Msa0645150:CDS | 45.0% |
| GCTCTCATGTCTTTCAATGG+TGG | - | chr4_3:49622162-49622181 | Msa0645150:CDS | 45.0% | |
| ! | CTCTTTGACAATTGGCCTGC+TGG | - | chr4_3:49621967-49621986 | Msa0645150:CDS | 50.0% |
| ! | AATTGGCCTGCTGGTAGTTC+TGG | - | chr4_3:49621976-49621995 | Msa0645150:CDS | 50.0% |
| TCGAGTTTCTCTCAAGCACC+CGG | - | chr4_3:49622046-49622065 | Msa0645150:CDS | 50.0% | |
| AGCACCCGGTTCATTAAACC+CGG | - | chr4_3:49622060-49622079 | Msa0645150:CDS | 50.0% | |
| GTGTTCTTGGTTGCTGTGCT+TGG | - | chr4_3:49622186-49622205 | Msa0645150:CDS | 50.0% | |
| CTGTGCTTGGTCATGCTGTT+GGG | - | chr4_3:49622199-49622218 | Msa0645150:CDS | 50.0% | |
| ACCCGGTTCAAACCCTGTTG+TGG | - | chr4_3:49622077-49622096 | Msa0645150:CDS | 55.0% | |
| GCCACAACAGGGTTTGAACC+GGG | + | chr4_3:49622081-49622100 | None:intergenic | 55.0% | |
| GGCCACAACAGGGTTTGAAC+CGG | + | chr4_3:49622082-49622101 | None:intergenic | 55.0% | |
| GGTTCAAACCCTGTTGTGGC+CGG | - | chr4_3:49622081-49622100 | Msa0645150:CDS | 55.0% | |
| GAACTAGACCGGCCACAACA+GGG | + | chr4_3:49622092-49622111 | None:intergenic | 55.0% | |
| TGAACTAGACCGGCCACAAC+AGG | + | chr4_3:49622093-49622112 | None:intergenic | 55.0% | |
| GCTGTGCTTGGTCATGCTGT+TGG | - | chr4_3:49622198-49622217 | Msa0645150:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 49621835 | 49622296 | 49621835 | ID=Msa0645150;Name=Msa0645150 |
| chr4_3 | mRNA | 49621835 | 49622296 | 49621835 | ID=Msa0645150-mRNA-1;Parent=Msa0645150;Name=Msa0645150-mRNA-1;_AED=0.24;_eAED=0.24;_QI=0|-1|0|1|-1|1|1|0|153 |
| chr4_3 | exon | 49621835 | 49622296 | 49621835 | ID=Msa0645150-mRNA-1:exon:11859;Parent=Msa0645150-mRNA-1 |
| chr4_3 | CDS | 49621835 | 49622296 | 49621835 | ID=Msa0645150-mRNA-1:cds;Parent=Msa0645150-mRNA-1 |
| Gene Sequence |
| Protein sequence |
