Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0605410 | XP_013456385.1 | 95.592 | 431 | 19 | 0 | 1 | 431 | 1 | 431 | 0.0 | 850 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0605410 | sp|Q9LN62|RRA3_ARATH | 65.947 | 417 | 130 | 5 | 22 | 429 | 14 | 427 | 0.0 | 557 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0605410 | A0A072UM19 | 95.592 | 431 | 19 | 0 | 1 | 431 | 1 | 431 | 0.0 | 850 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004580 | Msa0605410 | 0.803077 | 4.139774e-49 | -8.615850e-47 |
| Msa0012790 | Msa0605410 | 0.802794 | 4.737842e-49 | -8.615850e-47 |
| Msa0012820 | Msa0605410 | 0.810065 | 1.386923e-50 | -8.615850e-47 |
| Msa0025700 | Msa0605410 | 0.818128 | 2.304132e-52 | -8.615850e-47 |
| Msa0048950 | Msa0605410 | 0.830766 | 2.440744e-55 | -8.615850e-47 |
| Msa0059880 | Msa0605410 | 0.842683 | 2.225935e-58 | -8.615850e-47 |
| Msa0072030 | Msa0605410 | 0.815121 | 1.087555e-51 | -8.615850e-47 |
| Msa0106130 | Msa0605410 | 0.810400 | 1.174471e-50 | -8.615850e-47 |
| Msa0603950 | Msa0605410 | 0.818292 | 2.115418e-52 | -8.615850e-47 |
| Msa0605400 | Msa0605410 | 0.818593 | 1.807586e-52 | -8.615850e-47 |
| Msa0605410 | Msa0605470 | 0.841444 | 4.735082e-58 | -8.615850e-47 |
| Msa0605410 | Msa0623980 | 0.825617 | 4.252288e-54 | -8.615850e-47 |
| Msa0605410 | Msa0624050 | 0.804259 | 2.353623e-49 | -8.615850e-47 |
| Msa0605410 | Msa0643840 | 0.821441 | 4.030620e-53 | -8.615850e-47 |
| Msa0605410 | Msa0645060 | 0.804599 | 1.999363e-49 | -8.615850e-47 |
| Msa0605410 | Msa0645150 | 0.819083 | 1.398776e-52 | -8.615850e-47 |
| Msa0605410 | Msa0646210 | 0.836555 | 8.738297e-57 | -8.615850e-47 |
| Msa0605410 | Msa0651090 | 0.809962 | 1.460208e-50 | -8.615850e-47 |
| Msa0605410 | Msa0670260 | 0.858119 | 1.024945e-62 | -8.615850e-47 |
| Msa0605410 | Msa0670360 | 0.815738 | 7.924473e-52 | -8.615850e-47 |
| Msa0605410 | Msa0676140 | 0.805596 | 1.236964e-49 | -8.615850e-47 |
| Msa0605410 | Msa0676190 | 0.822298 | 2.552666e-53 | -8.615850e-47 |
| Msa0605410 | Msa0676200 | 0.820422 | 6.917749e-53 | -8.615850e-47 |
| Msa0605410 | Msa0678620 | 0.829872 | 4.035747e-55 | -8.615850e-47 |
| Msa0605410 | Msa0684560 | 0.805798 | 1.121867e-49 | -8.615850e-47 |
| Msa0605410 | Msa0684720 | 0.841885 | 3.621422e-58 | -8.615850e-47 |
| Msa0605410 | Msa0711240 | 0.800792 | 1.220791e-48 | -8.615850e-47 |
| Msa0605410 | Msa0715510 | 0.802606 | 5.181137e-49 | -8.615850e-47 |
| Msa0605410 | Msa0727480 | 0.815260 | 1.012820e-51 | -8.615850e-47 |
| Msa0605410 | Msa0768670 | 0.808042 | 3.761089e-50 | -8.615850e-47 |
| Msa0605410 | Msa0768720 | 0.806085 | 9.763807e-50 | -8.615850e-47 |
| Msa0605410 | Msa0787860 | 0.813201 | 2.885372e-51 | -8.615850e-47 |
| Msa0605410 | Msa0791300 | 0.800383 | 1.478592e-48 | -8.615850e-47 |
| Msa0605410 | Msa0814160 | 0.818631 | 1.772056e-52 | -8.615850e-47 |
| Msa0605410 | Msa0816140 | 0.800655 | 1.301437e-48 | -8.615850e-47 |
| Msa0605410 | Msa0824850 | 0.806047 | 9.942879e-50 | -8.615850e-47 |
| Msa0605410 | Msa0824860 | 0.832039 | 1.186864e-55 | -8.615850e-47 |
| Msa0605410 | Msa0854840 | 0.822423 | 2.388283e-53 | -8.615850e-47 |
| Msa0605410 | Msa0863840 | 0.837243 | 5.832212e-57 | -8.615850e-47 |
| Msa0605410 | Msa0863860 | 0.802515 | 5.409785e-49 | -8.615850e-47 |
| Msa0605410 | Msa0864160 | 0.822605 | 2.166009e-53 | -8.615850e-47 |
| Msa0605410 | Msa0883640 | 0.846901 | 1.623089e-59 | -8.615850e-47 |
| Msa0605410 | Msa0893840 | 0.801752 | 7.762104e-49 | -8.615850e-47 |
| Msa0605410 | Msa0902340 | 0.825417 | 4.741382e-54 | -8.615850e-47 |
| Msa0605410 | Msa0910830 | 0.859939 | 2.923301e-63 | -8.615850e-47 |
| Msa0605410 | Msa0960090 | 0.848409 | 6.244317e-60 | -8.615850e-47 |
| Msa0605410 | Msa0984000 | -0.805148 | 1.535503e-49 | -8.615850e-47 |
| Msa0605410 | Msa0985700 | 0.847373 | 1.204992e-59 | -8.615850e-47 |
| Msa0605410 | Msa1003110 | 0.813066 | 3.088832e-51 | -8.615850e-47 |
| Msa0605410 | Msa1020540 | 0.819193 | 1.320577e-52 | -8.615850e-47 |
| Msa0605410 | Msa1021620 | 0.823342 | 1.458746e-53 | -8.615850e-47 |
| Msa0605410 | Msa1024350 | 0.828319 | 9.604230e-55 | -8.615850e-47 |
| Msa0605410 | Msa1026050 | 0.815073 | 1.114526e-51 | -8.615850e-47 |
| Msa0605410 | Msa1041630 | 0.813259 | 2.802422e-51 | -8.615850e-47 |
| Msa0605410 | Msa1061670 | 0.846458 | 2.144279e-59 | -8.615850e-47 |
| Msa0605410 | Msa1076830 | 0.826808 | 2.213282e-54 | -8.615850e-47 |
| Msa0605410 | Msa1081610 | 0.831908 | 1.278085e-55 | -8.615850e-47 |
| Msa0605410 | Msa1087370 | 0.834093 | 3.658711e-56 | -8.615850e-47 |
| Msa0605410 | Msa1087380 | 0.811608 | 6.429387e-51 | -8.615850e-47 |
| Msa0605410 | Msa1106960 | 0.835872 | 1.302894e-56 | -8.615850e-47 |
| Msa0605410 | Msa1109880 | 0.825817 | 3.812157e-54 | -8.615850e-47 |
| Msa0605410 | Msa1109890 | 0.837350 | 5.475269e-57 | -8.615850e-47 |
| Msa0605410 | Msa1127840 | 0.804197 | 2.424998e-49 | -8.615850e-47 |
| Msa0605410 | Msa1133860 | 0.811581 | 6.518691e-51 | -8.615850e-47 |
| Msa0605410 | Msa1149020 | 0.805236 | 1.471650e-49 | -8.615850e-47 |
| Msa0605410 | Msa1166530 | 0.824347 | 8.481216e-54 | -8.615850e-47 |
| Msa0605410 | Msa1187900 | 0.809966 | 1.456986e-50 | -8.615850e-47 |
| Msa0605410 | Msa1214960 | 0.817328 | 3.490772e-52 | -8.615850e-47 |
| Msa0605410 | Msa1216600 | 0.827650 | 1.391506e-54 | -8.615850e-47 |
| Msa0605410 | Msa1242060 | 0.803317 | 3.693397e-49 | -8.615850e-47 |
| Msa0605410 | Msa1281370 | 0.814806 | 1.277060e-51 | -8.615850e-47 |
| Msa0605410 | Msa1286420 | 0.838496 | 2.778555e-57 | -8.615850e-47 |
| Msa0605410 | Msa1296870 | 0.839199 | 1.828024e-57 | -8.615850e-47 |
| Msa0605410 | Msa1300610 | 0.807926 | 3.981576e-50 | -8.615850e-47 |
| Msa0605410 | Msa1320530 | 0.813373 | 2.644946e-51 | -8.615850e-47 |
| Msa0605410 | Msa1323030 | 0.819757 | 9.819594e-53 | -8.615850e-47 |
| Msa0605410 | Msa1323160 | 0.808951 | 2.406402e-50 | -8.615850e-47 |
| Msa0605410 | Msa1329740 | 0.817930 | 2.554325e-52 | -8.615850e-47 |
| Msa0605410 | Msa1349810 | -0.800343 | 1.506753e-48 | -8.615850e-47 |
| Msa0605410 | Msa1357490 | 0.840380 | 9.003276e-58 | -8.615850e-47 |
| Msa0605410 | Msa1357750 | 0.811480 | 6.856465e-51 | -8.615850e-47 |
| Msa0605410 | Msa1357860 | 0.815968 | 7.042206e-52 | -8.615850e-47 |
| Msa0605410 | Msa1370930 | 0.814348 | 1.613046e-51 | -8.615850e-47 |
| Msa0605410 | Msa1373560 | 0.807490 | 4.926920e-50 | -8.615850e-47 |
| Msa0605410 | Msa1376070 | 0.836627 | 8.377238e-57 | -8.615850e-47 |
| Msa0605410 | Msa1377520 | 0.854921 | 8.918479e-62 | -8.615850e-47 |
| Msa0605410 | Msa1378400 | 0.823461 | 1.368133e-53 | -8.615850e-47 |
| Msa0605410 | Msa1393440 | 0.801197 | 1.008530e-48 | -8.615850e-47 |
| Msa0605410 | Msa1396550 | 0.808418 | 3.127112e-50 | -8.615850e-47 |
| Msa0605410 | Msa1407670 | 0.837180 | 6.052299e-57 | -8.615850e-47 |
| Msa0605410 | Msa1420020 | 0.809450 | 1.881118e-50 | -8.615850e-47 |
| Msa0605410 | Msa1421120 | 0.810864 | 9.322920e-51 | -8.615850e-47 |
| Msa0605410 | Msa1421130 | 0.812488 | 4.134810e-51 | -8.615850e-47 |
| Msa0605410 | Msa1426420 | 0.840912 | 6.532426e-58 | -8.615850e-47 |
| Msa0605410 | Msa1449770 | 0.840899 | 6.585249e-58 | -8.615850e-47 |
| Msa0605410 | Msa1459610 | 0.830877 | 2.292823e-55 | -8.615850e-47 |
| Msa0121910 | Msa0605410 | 0.833601 | 4.856069e-56 | -8.615850e-47 |
| Msa0139460 | Msa0605410 | 0.804049 | 2.602937e-49 | -8.615850e-47 |
| Msa0143680 | Msa0605410 | 0.814934 | 1.196500e-51 | -8.615850e-47 |
| Msa0143710 | Msa0605410 | 0.831308 | 1.797063e-55 | -8.615850e-47 |
| Msa0143740 | Msa0605410 | 0.821802 | 3.326556e-53 | -8.615850e-47 |
| Msa0143770 | Msa0605410 | 0.822552 | 2.228231e-53 | -8.615850e-47 |
| Msa0147670 | Msa0605410 | 0.812604 | 3.900147e-51 | -8.615850e-47 |
| Msa0147680 | Msa0605410 | 0.804188 | 2.435193e-49 | -8.615850e-47 |
| Msa0150910 | Msa0605410 | 0.815628 | 8.386142e-52 | -8.615850e-47 |
| Msa0170760 | Msa0605410 | 0.819303 | 1.246948e-52 | -8.615850e-47 |
| Msa0176600 | Msa0605410 | 0.806319 | 8.713011e-50 | -8.615850e-47 |
| Msa0177550 | Msa0605410 | 0.813585 | 2.375496e-51 | -8.615850e-47 |
| Msa0190670 | Msa0605410 | 0.806004 | 1.015469e-49 | -8.615850e-47 |
| Msa0194230 | Msa0605410 | 0.832435 | 9.469590e-56 | -8.615850e-47 |
| Msa0210850 | Msa0605410 | 0.802138 | 6.468714e-49 | -8.615850e-47 |
| Msa0212550 | Msa0605410 | 0.809016 | 2.329881e-50 | -8.615850e-47 |
| Msa0216760 | Msa0605410 | 0.848475 | 5.985150e-60 | -8.615850e-47 |
| Msa0219210 | Msa0605410 | 0.804512 | 2.084563e-49 | -8.615850e-47 |
| Msa0223880 | Msa0605410 | 0.816372 | 5.720911e-52 | -8.615850e-47 |
| Msa0374130 | Msa0605410 | 0.806916 | 6.519511e-50 | -8.615850e-47 |
| Msa0444200 | Msa0605410 | 0.803144 | 4.011062e-49 | -8.615850e-47 |
| Msa0469550 | Msa0605410 | 0.818287 | 2.120353e-52 | -8.615850e-47 |
| Msa0252930 | Msa0605410 | 0.812357 | 4.416331e-51 | -8.615850e-47 |
| Msa0259110 | Msa0605410 | 0.812843 | 3.457990e-51 | -8.615850e-47 |
| Msa0259300 | Msa0605410 | 0.801921 | 7.167302e-49 | -8.615850e-47 |
| Msa0265060 | Msa0605410 | 0.813544 | 2.425494e-51 | -8.615850e-47 |
| Msa0274250 | Msa0605410 | 0.839163 | 1.867320e-57 | -8.615850e-47 |
| Msa0274260 | Msa0605410 | 0.804765 | 1.845864e-49 | -8.615850e-47 |
| Msa0278950 | Msa0605410 | 0.805106 | 1.566827e-49 | -8.615850e-47 |
| Msa0295980 | Msa0605410 | 0.810015 | 1.421711e-50 | -8.615850e-47 |
| Msa0298270 | Msa0605410 | 0.829786 | 4.235988e-55 | -8.615850e-47 |
| Msa0314440 | Msa0605410 | 0.827586 | 1.441553e-54 | -8.615850e-47 |
| Msa0333940 | Msa0605410 | 0.827670 | 1.375886e-54 | -8.615850e-47 |
| Msa0334050 | Msa0605410 | 0.826934 | 2.065491e-54 | -8.615850e-47 |
| Msa0340650 | Msa0605410 | 0.812751 | 3.621251e-51 | -8.615850e-47 |
| Msa0343720 | Msa0605410 | 0.818944 | 1.504769e-52 | -8.615850e-47 |
| Msa0349910 | Msa0605410 | 0.806028 | 1.003536e-49 | -8.615850e-47 |
| Msa0491760 | Msa0605410 | 0.809694 | 1.666974e-50 | -8.615850e-47 |
| Msa0491770 | Msa0605410 | 0.823345 | 1.456177e-53 | -8.615850e-47 |
| Msa0515260 | Msa0605410 | 0.817971 | 2.499987e-52 | -8.615850e-47 |
| Msa0548970 | Msa0605410 | 0.840888 | 6.629043e-58 | -8.615850e-47 |
| Msa0549920 | Msa0605410 | 0.823727 | 1.185277e-53 | -8.615850e-47 |
| Msa0549930 | Msa0605410 | 0.840905 | 6.562555e-58 | -8.615850e-47 |
| Msa0584970 | Msa0605410 | 0.849001 | 4.279736e-60 | -8.615850e-47 |
| Msa0587180 | Msa0605410 | 0.803726 | 3.038071e-49 | -8.615850e-47 |
| Msa0594320 | Msa0605410 | 0.816435 | 5.537378e-52 | -8.615850e-47 |
| Msa0599600 | Msa0605410 | 0.802431 | 5.628229e-49 | -8.615850e-47 |
| Msa0602050 | Msa0605410 | 0.803515 | 3.360801e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0605410 | MtrunA17_Chr4g0034631 | 95.592 | 431 | 19 | 0 | 1 | 431 | 1 | 431 | 0.0 | 850 |
| Msa0605410 | MtrunA17_Chr4g0034641 | 87.298 | 433 | 53 | 1 | 1 | 431 | 1 | 433 | 0.0 | 771 |
| Msa0605410 | MtrunA17_Chr4g0034621 | 85.780 | 436 | 55 | 1 | 1 | 429 | 1 | 436 | 0.0 | 748 |
| Msa0605410 | MtrunA17_Chr4g0034651 | 84.703 | 438 | 51 | 2 | 1 | 431 | 34 | 462 | 0.0 | 736 |
| Msa0605410 | MtrunA17_Chr4g0034611 | 81.422 | 436 | 73 | 2 | 1 | 429 | 1 | 435 | 0.0 | 732 |
| Msa0605410 | MtrunA17_Chr4g0034661 | 81.713 | 432 | 66 | 2 | 1 | 430 | 1 | 421 | 0.0 | 687 |
| Msa0605410 | MtrunA17_Chr1g0154701 | 64.884 | 430 | 137 | 3 | 7 | 429 | 5 | 427 | 0.0 | 568 |
| Msa0605410 | MtrunA17_Chr8g0367951 | 28.205 | 195 | 117 | 7 | 159 | 348 | 391 | 567 | 3.72e-12 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0605410 | AT1G19360.1 | 65.947 | 417 | 130 | 5 | 22 | 429 | 14 | 427 | 0.0 | 557 |
| Msa0605410 | AT1G19360.2 | 65.947 | 417 | 130 | 5 | 22 | 429 | 14 | 427 | 0.0 | 557 |
| Msa0605410 | AT1G75110.1 | 64.337 | 415 | 140 | 2 | 22 | 429 | 14 | 427 | 0.0 | 551 |
| Msa0605410 | AT1G75120.1 | 63.054 | 406 | 131 | 3 | 24 | 429 | 16 | 402 | 0.0 | 517 |
| Msa0605410 | AT1G70630.5 | 29.384 | 211 | 117 | 6 | 148 | 348 | 230 | 418 | 2.89e-16 | 81.3 |
| Msa0605410 | AT1G70630.2 | 29.384 | 211 | 117 | 6 | 148 | 348 | 261 | 449 | 3.62e-16 | 80.9 |
| Msa0605410 | AT1G70630.1 | 29.384 | 211 | 117 | 6 | 148 | 348 | 261 | 449 | 3.62e-16 | 80.9 |
| Msa0605410 | AT1G70630.4 | 29.384 | 211 | 117 | 6 | 148 | 348 | 446 | 634 | 4.80e-16 | 80.9 |
| Msa0605410 | AT1G70630.7 | 29.384 | 211 | 117 | 6 | 148 | 348 | 398 | 586 | 4.92e-16 | 80.9 |
| Msa0605410 | AT1G70630.3 | 29.384 | 211 | 117 | 6 | 148 | 348 | 477 | 665 | 5.83e-16 | 80.9 |
| Msa0605410 | AT1G70630.6 | 29.384 | 211 | 117 | 6 | 148 | 348 | 467 | 655 | 6.44e-16 | 80.5 |
Find 92 sgRNAs with CRISPR-Local
Find 273 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCGGGTCTCTTTGGTAAAA+TGG | 0.121490 | 4_2:+51256407 | None:intergenic |
| CATTCCTTCAATTGAGCTTT+TGG | 0.209327 | 4_2:-51256072 | Msa0605410:CDS |
| CTTGATATGAGTAGAAAATT+AGG | 0.240715 | 4_2:+51260524 | None:intergenic |
| CATAATAACATGACAGCTTA+TGG | 0.285401 | 4_2:-51256197 | Msa0605410:CDS |
| GTTGTTGAATATTATGTTAA+TGG | 0.296088 | 4_2:-51255801 | Msa0605410:CDS |
| GTAATCATTGGAGTTCTTAC+TGG | 0.301834 | 4_2:-51260488 | Msa0605410:CDS |
| TATCATTATCCGGGTCTCTT+TGG | 0.318671 | 4_2:+51256399 | None:intergenic |
| AAGGCAACAACTAGGTAATT+AGG | 0.336091 | 4_2:+51256470 | None:intergenic |
| TAAGAATCCTGTACAATGAT+TGG | 0.341089 | 4_2:-51260584 | None:intergenic |
| TCATGCTGCTAAAAGAACTA+TGG | 0.353213 | 4_2:-51255952 | Msa0605410:CDS |
| TCTAATAAATTTGCCAATCT+CGG | 0.356388 | 4_2:+51256593 | None:intergenic |
| TTGTTGAATATTATGTTAAT+GGG | 0.359540 | 4_2:-51255800 | Msa0605410:CDS |
| CATGTTAAAATCAGAATTAG+TGG | 0.362941 | 4_2:-51256792 | Msa0605410:CDS |
| TATACCAACTCTCTTGATAT+TGG | 0.365508 | 4_2:+51256493 | None:intergenic |
| TGAAAATGAAACCTGGGTCT+TGG | 0.373380 | 4_2:+51260382 | None:intergenic |
| GTTGCTTGCATTAAGTAAAC+AGG | 0.375504 | 4_2:-51256690 | Msa0605410:CDS |
| AATTCATCAGGAGCAACAAT+AGG | 0.376468 | 4_2:+51256623 | None:intergenic |
| CCGGAGACAGCCGCCCCGTT+TGG | 0.377429 | 4_2:+51256356 | None:intergenic |
| TTGATATGAGTAGAAAATTA+GGG | 0.387021 | 4_2:+51260525 | None:intergenic |
| TAATTCACGTGAATAATTAC+CGG | 0.389710 | 4_2:+51255855 | None:intergenic |
| CGAGGTGTGCCATCGGGAAA+TGG | 0.401340 | 4_2:+51255759 | None:intergenic |
| CCGGGTCTCTTTGGTAAAAT+GGG | 0.403345 | 4_2:+51256408 | None:intergenic |
| ACAGTATCAATATCATTATC+CGG | 0.404384 | 4_2:+51256389 | None:intergenic |
| AGAATTAGTGGCACTCTTAT+CGG | 0.411192 | 4_2:-51256780 | Msa0605410:CDS |
| CTAATAAATTTGCCAATCTC+GGG | 0.411225 | 4_2:+51256594 | None:intergenic |
| CCAAACGGGGCGGCTGTCTC+CGG | 0.412973 | 4_2:-51256356 | Msa0605410:CDS |
| TGGGTCTTGGGTACAGCAAC+AGG | 0.416936 | 4_2:+51260395 | None:intergenic |
| TGAATTCTTGAACCCGAGAT+TGG | 0.422149 | 4_2:-51256606 | Msa0605410:CDS |
| TGATCATCTATACCGTGATT+CGG | 0.426234 | 4_2:-51256243 | Msa0605410:CDS |
| GAAAATGAAACCTGGGTCTT+GGG | 0.428634 | 4_2:+51260383 | None:intergenic |
| ATCGTTACCGCTGTAATCAT+TGG | 0.439320 | 4_2:-51260500 | Msa0605410:CDS |
| ATTAGGGTTGTTCTTCATCA+AGG | 0.448286 | 4_2:+51260541 | None:intergenic |
| CTCGGGTTCAAGAATTCATC+AGG | 0.455431 | 4_2:+51256611 | None:intergenic |
| AAGAATCCTGTACAATGATT+GGG | 0.460232 | 4_2:-51260583 | None:intergenic |
| AACAGGTAGGTGACGATTTG+AGG | 0.468113 | 4_2:+51260412 | None:intergenic |
| AGCTCAATTGAAGGAATGGT+TGG | 0.470800 | 4_2:+51256077 | None:intergenic |
| TGAGAAACAAAGAAGTCGTT+AGG | 0.478440 | 4_2:+51260443 | None:intergenic |
| AAAGAGTTCCTCGTTGAAAA+CGG | 0.480750 | 4_2:+51256004 | None:intergenic |
| TCAACAACTGCTTTCATTCG+CGG | 0.485251 | 4_2:+51255816 | None:intergenic |
| ATTCATCAGGAGCAACAATA+GGG | 0.490622 | 4_2:+51256624 | None:intergenic |
| CCTTCACATTTGAGTTTGCA+AGG | 0.492258 | 4_2:+51256537 | None:intergenic |
| TCACGGTATAGATGATCAAA+AGG | 0.505121 | 4_2:+51256248 | None:intergenic |
| GACTTTCGAAGGGGAATGCA+TGG | 0.506305 | 4_2:-51256034 | Msa0605410:CDS |
| CAAAAGCTCAATTGAAGGAA+TGG | 0.508580 | 4_2:+51256073 | None:intergenic |
| GGTTATCGAGGTGTGCCATC+GGG | 0.509771 | 4_2:+51255753 | None:intergenic |
| TAGAATACGAAATTTAAGTC+CGG | 0.511442 | 4_2:+51256337 | None:intergenic |
| GTTATTATGACCATCGCTCA+TGG | 0.514082 | 4_2:+51256211 | None:intergenic |
| TAACCTCAGTAAATTGAAAC+CGG | 0.514324 | 4_2:-51255874 | Msa0605410:CDS |
| CCATCACATCCTGGTTATGA+CGG | 0.520532 | 4_2:-51255978 | Msa0605410:CDS |
| CGGTCCAAAAGCTCAATTGA+AGG | 0.530180 | 4_2:+51256068 | None:intergenic |
| TTAGGGTTGTTCTTCATCAA+GGG | 0.533582 | 4_2:+51260542 | None:intergenic |
| GATAATGATATTGATACTGT+TGG | 0.535960 | 4_2:-51256386 | Msa0605410:CDS |
| ATCAGGAGCAACAATAGGGT+TGG | 0.536486 | 4_2:+51256628 | None:intergenic |
| AAAACAGGTGAGGGAGTTGA+CGG | 0.545877 | 4_2:-51256738 | Msa0605410:CDS |
| GCATGAAGCCCGTCATAACC+AGG | 0.559070 | 4_2:+51255969 | None:intergenic |
| TGAAGGAAATGCTCGAGGTA+TGG | 0.559342 | 4_2:-51256520 | Msa0605410:CDS |
| CATCACATCCTGGTTATGAC+GGG | 0.559997 | 4_2:-51255977 | Msa0605410:CDS |
| CAGTATCAATATCATTATCC+GGG | 0.561690 | 4_2:+51256390 | None:intergenic |
| TCAAAGACCATGGGATGGGT+TGG | 0.564496 | 4_2:-51256160 | Msa0605410:CDS |
| TGTGGCAGCACGACTTTCGA+AGG | 0.565368 | 4_2:-51256045 | Msa0605410:CDS |
| AGGTTATCGAGGTGTGCCAT+CGG | 0.565382 | 4_2:+51255752 | None:intergenic |
| GAAATGGTTTGAGAGCATCT+TGG | 0.566472 | 4_2:+51255775 | None:intergenic |
| GTCTTCAAAGACCATGGGAT+GGG | 0.567731 | 4_2:-51256164 | Msa0605410:CDS |
| CTTCACATTTGAGTTTGCAA+GGG | 0.571821 | 4_2:+51256538 | None:intergenic |
| TCGAAAGTCGTGCTGCCACA+CGG | 0.575082 | 4_2:+51256048 | None:intergenic |
| GTTCCTCGTTGAAAACGGCT+TGG | 0.577634 | 4_2:+51256009 | None:intergenic |
| CATCGTCTAAGGCAACAACT+AGG | 0.582454 | 4_2:+51256462 | None:intergenic |
| AACGATGTCTTCAAAGACCA+TGG | 0.583875 | 4_2:-51256170 | Msa0605410:CDS |
| CCTTGCAAACTCAAATGTGA+AGG | 0.591600 | 4_2:-51256537 | Msa0605410:CDS |
| GTGGCAGCACGACTTTCGAA+GGG | 0.594024 | 4_2:-51256044 | Msa0605410:CDS |
| TTCACCAATATCAAGAGAGT+TGG | 0.596908 | 4_2:-51256497 | Msa0605410:CDS |
| AATGCCTTGACAGTACCAAA+AGG | 0.604979 | 4_2:+51256656 | None:intergenic |
| CCGTCATAACCAGGATGTGA+TGG | 0.606127 | 4_2:+51255978 | None:intergenic |
| TCATTCGCGGAAGCTTATCA+CGG | 0.615337 | 4_2:+51255829 | None:intergenic |
| TGGATTCAACATCCGAATCA+CGG | 0.620285 | 4_2:+51256231 | None:intergenic |
| TGTCTTCAAAGACCATGGGA+TGG | 0.621538 | 4_2:-51256165 | Msa0605410:CDS |
| TAGTAGACCAACCCATCCCA+TGG | 0.627281 | 4_2:+51256153 | None:intergenic |
| GATGTTGAATCCATGAGCGA+TGG | 0.628620 | 4_2:-51256221 | Msa0605410:CDS |
| ACGATGTCTTCAAAGACCAT+GGG | 0.646143 | 4_2:-51256169 | Msa0605410:CDS |
| ACATAGAAACAAGGTTATCG+AGG | 0.646977 | 4_2:+51255741 | None:intergenic |
| TGTTGCTGTACCCAAGACCC+AGG | 0.647379 | 4_2:-51260393 | Msa0605410:intron |
| CAGGTGAGGGAGTTGACGGA+AGG | 0.652925 | 4_2:-51256734 | Msa0605410:CDS |
| ACTTTCGAAGGGGAATGCAT+GGG | 0.655092 | 4_2:-51256033 | Msa0605410:CDS |
| CTACTAACGTTTATACGACG+AGG | 0.660402 | 4_2:-51256136 | Msa0605410:CDS |
| AAATGTGAAGGAAATGCTCG+AGG | 0.663837 | 4_2:-51256525 | Msa0605410:CDS |
| TTACCGGTTTCAATTTACTG+AGG | 0.667376 | 4_2:+51255871 | None:intergenic |
| GTTGACGGAAGGAAAAGACC+AGG | 0.673638 | 4_2:-51256723 | Msa0605410:CDS |
| GCTCTCAAACCATTTCCCGA+TGG | 0.676608 | 4_2:-51255768 | Msa0605410:CDS |
| TCTTGGGTACAGCAACAGGT+AGG | 0.680252 | 4_2:+51260399 | None:intergenic |
| TGGCAGCACGACTTTCGAAG+GGG | 0.696691 | 4_2:-51256043 | Msa0605410:CDS |
| AAGAACTCCAATGATTACAG+CGG | 0.709043 | 4_2:+51260493 | None:intergenic |
| TTCGCGGAAGCTTATCACGG+TGG | 0.727930 | 4_2:+51255832 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTAATTAATATTATAAAAA+TGG | + | chr4_2:51258555-51258574 | None:intergenic | 0.0% |
| !! | AAAAAAAAAAAAACTATTGT+TGG | + | chr4_2:51256354-51256373 | None:intergenic | 10.0% |
| !!! | AAATATAGTTTTTTTTTTTG+TGG | + | chr4_2:51256554-51256573 | None:intergenic | 10.0% |
| !! | TATTATAATTACTATATTGT+TGG | + | chr4_2:51256634-51256653 | None:intergenic | 10.0% |
| !! | TAGTTTAAATTCATTAAAAT+AGG | - | chr4_2:51257292-51257311 | Msa0605410:intron | 10.0% |
| !! | AATATATGATCATATTTAAA+AGG | - | chr4_2:51257338-51257357 | Msa0605410:intron | 10.0% |
| !! | ATATATGATCATATTTAAAA+GGG | - | chr4_2:51257339-51257358 | Msa0605410:intron | 10.0% |
| !! | TTAATTACTTGTAAAAAAAA+GGG | - | chr4_2:51257362-51257381 | Msa0605410:intron | 10.0% |
| !!! | ACAAAATATAATTTTATACA+AGG | + | chr4_2:51258670-51258689 | None:intergenic | 10.0% |
| !! | ATTTAAATCTTTATTGAAAT+AGG | - | chr4_2:51258832-51258851 | Msa0605410:intron | 10.0% |
| !!! | TGATTTTATATTTTTGAAAT+AGG | - | chr4_2:51258924-51258943 | Msa0605410:intron | 10.0% |
| !! | TTATATATTAGTTAAAACAA+AGG | - | chr4_2:51259249-51259268 | Msa0605410:intron | 10.0% |
| !! | TATATATTAGTTAAAACAAA+GGG | - | chr4_2:51259250-51259269 | Msa0605410:intron | 10.0% |
| !! | TATTATAGTTACTATATTGT+TGG | + | chr4_2:51256593-51256612 | None:intergenic | 15.0% |
| !! | AAAAAGATGCAAAATAAATA+AGG | - | chr4_2:51256853-51256872 | Msa0605410:intron | 15.0% |
| !! | AAAAGATGCAAAATAAATAA+GGG | - | chr4_2:51256854-51256873 | Msa0605410:intron | 15.0% |
| !! | AAAGAAATAATTAATGTACT+TGG | - | chr4_2:51256886-51256905 | Msa0605410:intron | 15.0% |
| !!! | GACAAATTTTTTTTTCAAAA+GGG | - | chr4_2:51256936-51256955 | Msa0605410:intron | 15.0% |
| !!! | ATATATTATTTCTATTGTAG+CGG | + | chr4_2:51257325-51257344 | None:intergenic | 15.0% |
| !! | GTTAATTACTTGTAAAAAAA+AGG | - | chr4_2:51257361-51257380 | Msa0605410:intron | 15.0% |
| !! | TCTAAGAAATTCATAATTAT+GGG | - | chr4_2:51257898-51257917 | Msa0605410:intron | 15.0% |
| !!! | ATTATTTCATGATTTTTTTC+AGG | + | chr4_2:51258216-51258235 | None:intergenic | 15.0% |
| !!! | ATAAAAAGATATATCAGTTT+TGG | + | chr4_2:51258450-51258469 | None:intergenic | 15.0% |
| !! | GTTTAAATAAATGGTATAAA+TGG | + | chr4_2:51259206-51259225 | None:intergenic | 15.0% |
| !! | TTGGAAAATAAATTCTAATA+AGG | - | chr4_2:51259286-51259305 | Msa0605410:intron | 15.0% |
| !!! | GATTTTTTATTTTATTCTCT+TGG | - | chr4_2:51259468-51259487 | Msa0605410:intron | 15.0% |
| !! | TTGTTGAATATTATGTTAAT+GGG | - | chr4_2:51260524-51260543 | Msa0605410:CDS | 15.0% |
| !! | TTGATATGAGTAGAAAATTA+GGG | + | chr4_2:51255802-51255821 | None:intergenic | 20.0% |
| !! | TTCAAGCACATTTAATTAAT+TGG | - | chr4_2:51256188-51256207 | Msa0605410:CDS | 20.0% |
| !!! | AAAACTATTGTTGGTAATTT+AGG | + | chr4_2:51256345-51256364 | None:intergenic | 20.0% |
| !! | AATGCATAATAATATATGCA+AGG | - | chr4_2:51256506-51256525 | Msa0605410:CDS | 20.0% |
| !!! | TATAGTTTTTTTTTTTGTGG+TGG | + | chr4_2:51256551-51256570 | None:intergenic | 20.0% |
| !!! | GGACAAATTTTTTTTTCAAA+AGG | - | chr4_2:51256935-51256954 | Msa0605410:intron | 20.0% |
| !! | TTTATATAAGCAATTGAGTT+AGG | - | chr4_2:51257059-51257078 | Msa0605410:intron | 20.0% |
| !!! | ACTTTAGTTTAGTATGAAAT+AGG | - | chr4_2:51257225-51257244 | Msa0605410:intron | 20.0% |
| !! | AGTTTAAATTTCCATTATAG+TGG | + | chr4_2:51257258-51257277 | None:intergenic | 20.0% |
| !! | AAACTCAAAAAACAAAACAA+CGG | - | chr4_2:51257595-51257614 | Msa0605410:intron | 20.0% |
| !! | GTCTAAGAAATTCATAATTA+TGG | - | chr4_2:51257897-51257916 | Msa0605410:intron | 20.0% |
| !! | CTTTATTCTTGAAAAATTCT+TGG | - | chr4_2:51258094-51258113 | Msa0605410:intron | 20.0% |
| !!! | AAAATTAGATTTTTTCGACT+GGG | + | chr4_2:51258161-51258180 | None:intergenic | 20.0% |
| !!! | AAAAATTAGATTTTTTCGAC+TGG | + | chr4_2:51258162-51258181 | None:intergenic | 20.0% |
| !! | AAGAAGAATATCAAATTACA+AGG | - | chr4_2:51258288-51258307 | Msa0605410:intron | 20.0% |
| !!! | CAAACATAGTATATTTTACA+GGG | - | chr4_2:51258348-51258367 | Msa0605410:intron | 20.0% |
| !!! | TTAGTATGATTAGAACTTTT+CGG | + | chr4_2:51258424-51258443 | None:intergenic | 20.0% |
| !! | GTAAAAAGTAATTAAGTCTA+GGG | + | chr4_2:51258723-51258742 | None:intergenic | 20.0% |
| !! | ATACTAGTAGTATATAGTAA+AGG | - | chr4_2:51258764-51258783 | Msa0605410:intron | 20.0% |
| !! | TACTAGTAGTATATAGTAAA+GGG | - | chr4_2:51258765-51258784 | Msa0605410:intron | 20.0% |
| !! | ACAATAAAAAAGCAGATAAA+TGG | - | chr4_2:51259065-51259084 | Msa0605410:intron | 20.0% |
| !!! | AAAGGGAATGATATTTTAAT+TGG | - | chr4_2:51259267-51259286 | Msa0605410:intron | 20.0% |
| !! | GTTGTTGAATATTATGTTAA+TGG | - | chr4_2:51260523-51260542 | Msa0605410:CDS | 20.0% |
| ! | CTTGATATGAGTAGAAAATT+AGG | + | chr4_2:51255803-51255822 | None:intergenic | 25.0% |
| !! | CTAATTTTCTACTCATATCA+AGG | - | chr4_2:51255801-51255820 | Msa0605410:CDS | 25.0% |
| ! | ATAATAATATATGCAAGGTC+TGG | - | chr4_2:51256511-51256530 | Msa0605410:CDS | 25.0% |
| ! | TAATAATATATGCAAGGTCT+GGG | - | chr4_2:51256512-51256531 | Msa0605410:CDS | 25.0% |
| ! | TAAATTAACTCTCTCTCTTA+AGG | + | chr4_2:51256800-51256819 | None:intergenic | 25.0% |
| !! | CAAAATAAATAAGGGTATGT+TGG | - | chr4_2:51256862-51256881 | Msa0605410:intron | 25.0% |
| !! | TTCAAAAGGGTCTTATAATT+AGG | - | chr4_2:51256949-51256968 | Msa0605410:intron | 25.0% |
| !! | TCAAAAGGGTCTTATAATTA+GGG | - | chr4_2:51256950-51256969 | Msa0605410:intron | 25.0% |
| !! | TATAGGCAAAAACTTGTTTA+AGG | - | chr4_2:51256992-51257011 | Msa0605410:intron | 25.0% |
| !! | AACTTGTTTAAGGATATAAC+TGG | - | chr4_2:51257002-51257021 | Msa0605410:intron | 25.0% |
| !! | CCATGACTTCATAATATTTT+TGG | + | chr4_2:51257176-51257195 | None:intergenic | 25.0% |
| ! | CCAAAAATATTATGAAGTCA+TGG | - | chr4_2:51257173-51257192 | Msa0605410:intron | 25.0% |
| ! | AATAAGAATCTCGAATTACA+GGG | + | chr4_2:51257465-51257484 | None:intergenic | 25.0% |
| ! | TAATAAGAATCTCGAATTAC+AGG | + | chr4_2:51257466-51257485 | None:intergenic | 25.0% |
| ! | CATAAAAAAATTCAGTCTCT+AGG | + | chr4_2:51257528-51257547 | None:intergenic | 25.0% |
| ! | GAACTCAAAATTGGATTTAT+AGG | + | chr4_2:51257630-51257649 | None:intergenic | 25.0% |
| !! | AATTTCAATTTTGCACGTTT+TGG | + | chr4_2:51257746-51257765 | None:intergenic | 25.0% |
| !! | ATTTCATTCCCTAATTTTGT+AGG | - | chr4_2:51257798-51257817 | Msa0605410:intron | 25.0% |
| ! | ACTAAAAAACTTCATTGTGA+TGG | + | chr4_2:51257846-51257865 | None:intergenic | 25.0% |
| !!! | TTTTTTAGTTTTGAAACGAG+AGG | - | chr4_2:51257857-51257876 | Msa0605410:intron | 25.0% |
| !!! | AAATTAGATTTTTTCGACTG+GGG | + | chr4_2:51258160-51258179 | None:intergenic | 25.0% |
| ! | CCTGTAAAATATACTATGTT+TGG | + | chr4_2:51258350-51258369 | None:intergenic | 25.0% |
| !! | CCAAACATAGTATATTTTAC+AGG | - | chr4_2:51258347-51258366 | Msa0605410:intron | 25.0% |
| ! | ATACAGTTAAATGCAGTTAA+AGG | - | chr4_2:51258470-51258489 | Msa0605410:intron | 25.0% |
| !! | CAATTTTGTTACTATTGTTG+TGG | + | chr4_2:51258623-51258642 | None:intergenic | 25.0% |
| ! | CACAACAATAGTAACAAAAT+TGG | - | chr4_2:51258621-51258640 | Msa0605410:intron | 25.0% |
| ! | GGTAAAAAGTAATTAAGTCT+AGG | + | chr4_2:51258724-51258743 | None:intergenic | 25.0% |
| ! | ACTAGTAGTATATAGTAAAG+GGG | - | chr4_2:51258766-51258785 | Msa0605410:intron | 25.0% |
| !!! | TTTTAGAGTGCAACATATAA+AGG | - | chr4_2:51259150-51259169 | Msa0605410:intron | 25.0% |
| !! | TTTAGAGTGCAACATATAAA+GGG | - | chr4_2:51259151-51259170 | Msa0605410:intron | 25.0% |
| !! | AATTTGAAGTTAGAGAACTT+TGG | + | chr4_2:51259335-51259354 | None:intergenic | 25.0% |
| !!! | TTTTATTTTATTCTCTTGGC+AGG | - | chr4_2:51259472-51259491 | Msa0605410:intron | 25.0% |
| ! | CATGTTAAAATCAGAATTAG+TGG | - | chr4_2:51259532-51259551 | Msa0605410:intron | 25.0% |
| ! | TCTAATAAATTTGCCAATCT+CGG | + | chr4_2:51259734-51259753 | None:intergenic | 25.0% |
| ! | ACAGTATCAATATCATTATC+CGG | + | chr4_2:51259938-51259957 | None:intergenic | 25.0% |
| ! | GATAATGATATTGATACTGT+TGG | - | chr4_2:51259938-51259957 | Msa0605410:intron | 25.0% |
| ! | TAGAATACGAAATTTAAGTC+CGG | + | chr4_2:51259990-51260009 | None:intergenic | 25.0% |
| !!! | AGGATATTTGTTTTCAATTC+TGG | - | chr4_2:51260208-51260227 | Msa0605410:intron | 25.0% |
| ! | TAATTCACGTGAATAATTAC+CGG | + | chr4_2:51260472-51260491 | None:intergenic | 25.0% |
| ! | ACTGTGATAGTGTTTGATTA+TGG | - | chr4_2:51256100-51256119 | Msa0605410:CDS | 30.0% |
| ! | ATTATGGCTTTTACTACATG+TGG | - | chr4_2:51256116-51256135 | Msa0605410:CDS | 30.0% |
| ! | TTATGGCTTTTACTACATGT+GGG | - | chr4_2:51256117-51256136 | Msa0605410:CDS | 30.0% |
| AATAATATATGCAAGGTCTG+GGG | - | chr4_2:51256513-51256532 | Msa0605410:CDS | 30.0% | |
| !!! | TTTTTTTTTTTGTGGTGGTC+GGG | + | chr4_2:51256546-51256565 | None:intergenic | 30.0% |
| !!! | GTTTTTTTTTTTGTGGTGGT+CGG | + | chr4_2:51256547-51256566 | None:intergenic | 30.0% |
| ! | ATCTCCGTAATTTTTGCAAA+AGG | + | chr4_2:51256717-51256736 | None:intergenic | 30.0% |
| ATTACGGAGATTAAGAAAGT+TGG | - | chr4_2:51256726-51256745 | Msa0605410:CDS | 30.0% | |
| AATGTACTTGGAAATACCAA+AGG | - | chr4_2:51256898-51256917 | Msa0605410:intron | 30.0% | |
| ATGTACTTGGAAATACCAAA+GGG | - | chr4_2:51256899-51256918 | Msa0605410:intron | 30.0% | |
| CTAATTCAAAGTTTGTCCAA+AGG | + | chr4_2:51257117-51257136 | None:intergenic | 30.0% | |
| TAGGAATAACACCACTATAA+TGG | - | chr4_2:51257244-51257263 | Msa0605410:intron | 30.0% | |
| CAAACTTTGTGTATACTACA+GGG | + | chr4_2:51257405-51257424 | None:intergenic | 30.0% | |
| TCAAACTTTGTGTATACTAC+AGG | + | chr4_2:51257406-51257425 | None:intergenic | 30.0% | |
| TAACCATGCCTACAAAATTA+GGG | + | chr4_2:51257809-51257828 | None:intergenic | 30.0% | |
| !!! | AGAATTTTTCAAGACACAGT+TGG | - | chr4_2:51257979-51257998 | Msa0605410:intron | 30.0% |
| !!! | GATTTTTTTCAGGCATGTTT+AGG | + | chr4_2:51258206-51258225 | None:intergenic | 30.0% |
| CATGAAATAATTCAACCTCT+AGG | - | chr4_2:51258225-51258244 | Msa0605410:intron | 30.0% | |
| ! | TTGGACTACGTCTATATTTT+AGG | - | chr4_2:51258256-51258275 | Msa0605410:intron | 30.0% |
| ! | TGGACTACGTCTATATTTTA+GGG | - | chr4_2:51258257-51258276 | Msa0605410:intron | 30.0% |
| ! | AGTTAAAGGAGACACAATTT+TGG | - | chr4_2:51258484-51258503 | Msa0605410:intron | 30.0% |
| ! | GTTAAAGGAGACACAATTTT+GGG | - | chr4_2:51258485-51258504 | Msa0605410:intron | 30.0% |
| ! | TTTTAGACGAAGGTTAAAAC+CGG | + | chr4_2:51258525-51258544 | None:intergenic | 30.0% |
| GGGTAAAATTGACAGAAAAA+TGG | + | chr4_2:51258703-51258722 | None:intergenic | 30.0% | |
| TCAAGACATGCACAATAAAA+TGG | + | chr4_2:51258745-51258764 | None:intergenic | 30.0% | |
| CGCAACAATAAAAACAACAT+TGG | - | chr4_2:51258862-51258881 | Msa0605410:intron | 30.0% | |
| ATTTATAACCGGTTGAAAGA+TGG | + | chr4_2:51259107-51259126 | None:intergenic | 30.0% | |
| !! | GTTGCACTCTAAAATTTGAT+AGG | + | chr4_2:51259144-51259163 | None:intergenic | 30.0% |
| AAGAAGTCATTGAGAAACAA+AGG | + | chr4_2:51259372-51259391 | None:intergenic | 30.0% | |
| GAAACAAAGAAGTCATTGTT+GGG | + | chr4_2:51259400-51259419 | None:intergenic | 30.0% | |
| AGAAACAAAGAAGTCATTGT+TGG | + | chr4_2:51259401-51259420 | None:intergenic | 30.0% | |
| TTAAGTAAACAGGAAAAAGC+TGG | - | chr4_2:51259644-51259663 | Msa0605410:intron | 30.0% | |
| CTAATAAATTTGCCAATCTC+GGG | + | chr4_2:51259733-51259752 | None:intergenic | 30.0% | |
| TATACCAACTCTCTTGATAT+TGG | + | chr4_2:51259834-51259853 | None:intergenic | 30.0% | |
| CAGTATCAATATCATTATCC+GGG | + | chr4_2:51259937-51259956 | None:intergenic | 30.0% | |
| ACTGTTGGAAAAATTCCAAA+CGG | - | chr4_2:51259953-51259972 | Msa0605410:intron | 30.0% | |
| ! | TCTAAGAGAATTTTTGCAGT+TGG | - | chr4_2:51260006-51260025 | Msa0605410:intron | 30.0% |
| ! | CTAAGAGAATTTTTGCAGTT+GGG | - | chr4_2:51260007-51260026 | Msa0605410:intron | 30.0% |
| CATAATAACATGACAGCTTA+TGG | - | chr4_2:51260127-51260146 | Msa0605410:intron | 30.0% | |
| TAACCTCAGTAAATTGAAAC+CGG | - | chr4_2:51260450-51260469 | Msa0605410:CDS | 30.0% | |
| TTAGGGTTGTTCTTCATCAA+GGG | + | chr4_2:51255785-51255804 | None:intergenic | 35.0% | |
| ATTAGGGTTGTTCTTCATCA+AGG | + | chr4_2:51255786-51255805 | None:intergenic | 35.0% | |
| AAGAACTCCAATGATTACAG+CGG | + | chr4_2:51255834-51255853 | None:intergenic | 35.0% | |
| GTAATCATTGGAGTTCTTAC+TGG | - | chr4_2:51255836-51255855 | Msa0605410:CDS | 35.0% | |
| TGAGAAACAAAGAAGTCGTT+AGG | + | chr4_2:51255884-51255903 | None:intergenic | 35.0% | |
| CTTCGATGAAAATGAAACCT+GGG | + | chr4_2:51255951-51255970 | None:intergenic | 35.0% | |
| TCTTCGATGAAAATGAAACC+TGG | + | chr4_2:51255952-51255971 | None:intergenic | 35.0% | |
| AACAAAAACAGTGAAGTCAG+AGG | + | chr4_2:51256073-51256092 | None:intergenic | 35.0% | |
| TGATAATATTACCAGCGTTC+AGG | - | chr4_2:51256279-51256298 | Msa0605410:CDS | 35.0% | |
| !!! | TTTTTTTTTTGTGGTGGTCG+GGG | + | chr4_2:51256545-51256564 | None:intergenic | 35.0% |
| GCAAAAGGCTCCTATAATTA+GGG | + | chr4_2:51256702-51256721 | None:intergenic | 35.0% | |
| TGCAAAAGGCTCCTATAATT+AGG | + | chr4_2:51256703-51256722 | None:intergenic | 35.0% | |
| ! | GGAGCCTTTTGCAAAAATTA+CGG | - | chr4_2:51256710-51256729 | Msa0605410:CDS | 35.0% |
| TGTACTTGGAAATACCAAAG+GGG | - | chr4_2:51256900-51256919 | Msa0605410:intron | 35.0% | |
| ! | ACCAAAGGGGTCTTATAAAA+AGG | - | chr4_2:51256913-51256932 | Msa0605410:intron | 35.0% |
| ! | CCAAAGGGGTCTTATAAAAA+GGG | - | chr4_2:51256914-51256933 | Msa0605410:intron | 35.0% |
| ! | AAGGGTCTTATAATTAGGGA+CGG | - | chr4_2:51256954-51256973 | Msa0605410:intron | 35.0% |
| ! | CCAAAGGATTTGTCATTTGA+TGG | + | chr4_2:51257101-51257120 | None:intergenic | 35.0% |
| CCATCAAATGACAAATCCTT+TGG | - | chr4_2:51257098-51257117 | Msa0605410:intron | 35.0% | |
| TGAATTAGCAGAGTCTCATT+CGG | - | chr4_2:51257129-51257148 | Msa0605410:intron | 35.0% | |
| !!! | CAGTCTCTAGGATGATTTTT+TGG | + | chr4_2:51257516-51257535 | None:intergenic | 35.0% |
| GCATACAGTGAACTCAAAAT+TGG | + | chr4_2:51257639-51257658 | None:intergenic | 35.0% | |
| ! | ATTCCCTAATTTTGTAGGCA+TGG | - | chr4_2:51257803-51257822 | Msa0605410:intron | 35.0% |
| CTAACCATGCCTACAAAATT+AGG | + | chr4_2:51257810-51257829 | None:intergenic | 35.0% | |
| CTATTTGCCACAATTTAAGG+AGG | + | chr4_2:51258055-51258074 | None:intergenic | 35.0% | |
| GCACTATTTGCCACAATTTA+AGG | + | chr4_2:51258058-51258077 | None:intergenic | 35.0% | |
| GGCAAATAGTGCATTGTAAT+TGG | - | chr4_2:51258066-51258085 | Msa0605410:intron | 35.0% | |
| TTCGACTGGGGATAAATTAA+TGG | + | chr4_2:51258148-51258167 | None:intergenic | 35.0% | |
| TTTAGACGAAGGTTAAAACC+GGG | + | chr4_2:51258524-51258543 | None:intergenic | 35.0% | |
| !!! | TGGTCAAAAGTTTTAGACGA+AGG | + | chr4_2:51258535-51258554 | None:intergenic | 35.0% |
| ATCAGTTTCCATCTTTCAAC+CGG | - | chr4_2:51259096-51259115 | Msa0605410:intron | 35.0% | |
| AGAATTAGTGGCACTCTTAT+CGG | - | chr4_2:51259544-51259563 | Msa0605410:intron | 35.0% | |
| AAATGCAGAGCTGAAAAAAC+AGG | - | chr4_2:51259571-51259590 | Msa0605410:intron | 35.0% | |
| GTTGCTTGCATTAAGTAAAC+AGG | - | chr4_2:51259634-51259653 | Msa0605410:intron | 35.0% | |
| ATTCATCAGGAGCAACAATA+GGG | + | chr4_2:51259703-51259722 | None:intergenic | 35.0% | |
| AATTCATCAGGAGCAACAAT+AGG | + | chr4_2:51259704-51259723 | None:intergenic | 35.0% | |
| ! | CTTCACATTTGAGTTTGCAA+GGG | + | chr4_2:51259789-51259808 | None:intergenic | 35.0% |
| TTCACCAATATCAAGAGAGT+TGG | - | chr4_2:51259827-51259846 | Msa0605410:intron | 35.0% | |
| AAGGCAACAACTAGGTAATT+AGG | + | chr4_2:51259857-51259876 | None:intergenic | 35.0% | |
| ! | TTTTGCAATCTCATCGTCTA+AGG | + | chr4_2:51259876-51259895 | None:intergenic | 35.0% |
| CTGTTGGAAAAATTCCAAAC+GGG | - | chr4_2:51259954-51259973 | Msa0605410:intron | 35.0% | |
| TGTTGGAAAAATTCCAAACG+GGG | - | chr4_2:51259955-51259974 | Msa0605410:intron | 35.0% | |
| TCACGGTATAGATGATCAAA+AGG | + | chr4_2:51260079-51260098 | None:intergenic | 35.0% | |
| TGATCATCTATACCGTGATT+CGG | - | chr4_2:51260081-51260100 | Msa0605410:intron | 35.0% | |
| CAAAAGCTCAATTGAAGGAA+TGG | + | chr4_2:51260254-51260273 | None:intergenic | 35.0% | |
| ! | CATTCCTTCAATTGAGCTTT+TGG | - | chr4_2:51260252-51260271 | Msa0605410:intron | 35.0% |
| AAAGAGTTCCTCGTTGAAAA+CGG | + | chr4_2:51260323-51260342 | None:intergenic | 35.0% | |
| TCATGCTGCTAAAAGAACTA+TGG | - | chr4_2:51260372-51260391 | Msa0605410:intron | 35.0% | |
| !! | TTACCGGTTTCAATTTACTG+AGG | + | chr4_2:51260456-51260475 | None:intergenic | 35.0% |
| ATTGGGCTCAGAGAAAAAGA+AGG | - | chr4_2:51255758-51255777 | Msa0605410:CDS | 40.0% | |
| ATCGTTACCGCTGTAATCAT+TGG | - | chr4_2:51255824-51255843 | Msa0605410:CDS | 40.0% | |
| GAAAATGAAACCTGGGTCTT+GGG | + | chr4_2:51255944-51255963 | None:intergenic | 40.0% | |
| TGAAAATGAAACCTGGGTCT+TGG | + | chr4_2:51255945-51255964 | None:intergenic | 40.0% | |
| TTACTACATGTGGGTCATTG+TGG | - | chr4_2:51256126-51256145 | Msa0605410:CDS | 40.0% | |
| TGAGCTTAGCTCAGTTGTTA+AGG | - | chr4_2:51256481-51256500 | Msa0605410:CDS | 40.0% | |
| AAGGCTCCTATAATTAGGGA+CGG | + | chr4_2:51256698-51256717 | None:intergenic | 40.0% | |
| ! | CCCTTTTTATAAGACCCCTT+TGG | + | chr4_2:51256917-51256936 | None:intergenic | 40.0% |
| GGAGGTAGTAGCATTCTTAT+AGG | - | chr4_2:51256975-51256994 | Msa0605410:intron | 40.0% | |
| TCTACTAAGCGTATACTCAC+AGG | - | chr4_2:51257771-51257790 | Msa0605410:intron | 40.0% | |
| AGCTACACCTCCTTAAATTG+TGG | - | chr4_2:51258045-51258064 | Msa0605410:intron | 40.0% | |
| ! | GCATGTTTAGGACGTCAAAA+TGG | + | chr4_2:51258194-51258213 | None:intergenic | 40.0% |
| !!! | CAACCTCTAGGTCACTTTTT+TGG | - | chr4_2:51258237-51258256 | Msa0605410:intron | 40.0% |
| AGTCCAAAAAAGTGACCTAG+AGG | + | chr4_2:51258243-51258262 | None:intergenic | 40.0% | |
| !!! | TTGGGCTGAATTTTTTGTCC+CGG | - | chr4_2:51258503-51258522 | Msa0605410:intron | 40.0% |
| AGAGCTGAAAAAACAGGTGA+GGG | - | chr4_2:51259577-51259596 | Msa0605410:intron | 40.0% | |
| !!! | CAAGCAACTTTTTTTCAGCC+TGG | + | chr4_2:51259622-51259641 | None:intergenic | 40.0% |
| AATGCCTTGACAGTACCAAA+AGG | + | chr4_2:51259671-51259690 | None:intergenic | 40.0% | |
| TGAATTCTTGAACCCGAGAT+TGG | - | chr4_2:51259718-51259737 | Msa0605410:intron | 40.0% | |
| ! | CCTTCACATTTGAGTTTGCA+AGG | + | chr4_2:51259790-51259809 | None:intergenic | 40.0% |
| CCTTGCAAACTCAAATGTGA+AGG | - | chr4_2:51259787-51259806 | Msa0605410:intron | 40.0% | |
| AAATGTGAAGGAAATGCTCG+AGG | - | chr4_2:51259799-51259818 | Msa0605410:intron | 40.0% | |
| TATCATTATCCGGGTCTCTT+TGG | + | chr4_2:51259928-51259947 | None:intergenic | 40.0% | |
| TGGATTCAACATCCGAATCA+CGG | + | chr4_2:51260096-51260115 | None:intergenic | 40.0% | |
| GTTATTATGACCATCGCTCA+TGG | + | chr4_2:51260116-51260135 | None:intergenic | 40.0% | |
| AACGATGTCTTCAAAGACCA+TGG | - | chr4_2:51260154-51260173 | Msa0605410:intron | 40.0% | |
| ACGATGTCTTCAAAGACCAT+GGG | - | chr4_2:51260155-51260174 | Msa0605410:intron | 40.0% | |
| CTACTAACGTTTATACGACG+AGG | - | chr4_2:51260188-51260207 | Msa0605410:intron | 40.0% | |
| AGCTCAATTGAAGGAATGGT+TGG | + | chr4_2:51260250-51260269 | None:intergenic | 40.0% | |
| ! | CTCTTTTATCCATCACATCC+TGG | - | chr4_2:51260337-51260356 | Msa0605410:intron | 40.0% |
| ! | TGAACAGCAGAGTTCTTTTC+AGG | - | chr4_2:51260410-51260429 | Msa0605410:CDS | 40.0% |
| TCAACAACTGCTTTCATTCG+CGG | + | chr4_2:51260511-51260530 | None:intergenic | 40.0% | |
| !! | GAAATGGTTTGAGAGCATCT+TGG | + | chr4_2:51260552-51260571 | None:intergenic | 40.0% |
| AACAGGTAGGTGACGATTTG+AGG | + | chr4_2:51255915-51255934 | None:intergenic | 45.0% | |
| ATAAGAGAGTCGTCCAAACG+TGG | - | chr4_2:51256242-51256261 | Msa0605410:CDS | 45.0% | |
| AGTCGTCCAAACGTGGAATT+GGG | - | chr4_2:51256249-51256268 | Msa0605410:CDS | 45.0% | |
| GATTCACCCAATTCCACGTT+TGG | + | chr4_2:51256258-51256277 | None:intergenic | 45.0% | |
| AGGCTCCTATAATTAGGGAC+GGG | + | chr4_2:51256697-51256716 | None:intergenic | 45.0% | |
| ! | GGTCTTATAATTAGGGACGG+AGG | - | chr4_2:51256957-51256976 | Msa0605410:intron | 45.0% |
| CAGAGCTGAAAAAACAGGTG+AGG | - | chr4_2:51259576-51259595 | Msa0605410:intron | 45.0% | |
| AAAACAGGTGAGGGAGTTGA+CGG | - | chr4_2:51259586-51259605 | Msa0605410:intron | 45.0% | |
| ! | CAGGAAAAAGCTGGACCTTT+TGG | - | chr4_2:51259653-51259672 | Msa0605410:intron | 45.0% |
| ! | TGGACCTTTTGGTACTGTCA+AGG | - | chr4_2:51259664-51259683 | Msa0605410:intron | 45.0% |
| ATCAGGAGCAACAATAGGGT+TGG | + | chr4_2:51259699-51259718 | None:intergenic | 45.0% | |
| CTCGGGTTCAAGAATTCATC+AGG | + | chr4_2:51259716-51259735 | None:intergenic | 45.0% | |
| TGAAGGAAATGCTCGAGGTA+TGG | - | chr4_2:51259804-51259823 | Msa0605410:intron | 45.0% | |
| ! | CATCGTCTAAGGCAACAACT+AGG | + | chr4_2:51259865-51259884 | None:intergenic | 45.0% |
| CCGGGTCTCTTTGGTAAAAT+GGG | + | chr4_2:51259919-51259938 | None:intergenic | 45.0% | |
| ! | CCCATTTTACCAAAGAGACC+CGG | - | chr4_2:51259916-51259935 | Msa0605410:intron | 45.0% |
| TCCGGGTCTCTTTGGTAAAA+TGG | + | chr4_2:51259920-51259939 | None:intergenic | 45.0% | |
| TGGAAAAATTCCAAACGGGG+CGG | - | chr4_2:51259958-51259977 | Msa0605410:intron | 45.0% | |
| GATGTTGAATCCATGAGCGA+TGG | - | chr4_2:51260103-51260122 | Msa0605410:intron | 45.0% | |
| TGTCTTCAAAGACCATGGGA+TGG | - | chr4_2:51260159-51260178 | Msa0605410:intron | 45.0% | |
| GTCTTCAAAGACCATGGGAT+GGG | - | chr4_2:51260160-51260179 | Msa0605410:intron | 45.0% | |
| CGGTCCAAAAGCTCAATTGA+AGG | + | chr4_2:51260259-51260278 | None:intergenic | 45.0% | |
| ! | AATTGAGCTTTTGGACCGTG+TGG | - | chr4_2:51260261-51260280 | Msa0605410:intron | 45.0% |
| ACTTTCGAAGGGGAATGCAT+GGG | - | chr4_2:51260291-51260310 | Msa0605410:intron | 45.0% | |
| CCATCACATCCTGGTTATGA+CGG | - | chr4_2:51260346-51260365 | Msa0605410:intron | 45.0% | |
| CATCACATCCTGGTTATGAC+GGG | - | chr4_2:51260347-51260366 | Msa0605410:intron | 45.0% | |
| !! | GAGTTCTTTTCAGGACAGTG+AGG | - | chr4_2:51260419-51260438 | Msa0605410:CDS | 45.0% |
| TCATTCGCGGAAGCTTATCA+CGG | + | chr4_2:51260498-51260517 | None:intergenic | 45.0% | |
| !!! | ATATATGTTTTTTATTTTAT+AGG | - | chr4_2:51258316-51258335 | Msa0605410:intron | 5.0% |
| !!! | TAAAATAAACATTTTAAATT+GGG | + | chr4_2:51258391-51258410 | None:intergenic | 5.0% |
| !!! | TTAAAATAAACATTTTAAAT+TGG | + | chr4_2:51258392-51258411 | None:intergenic | 5.0% |
| !!! | TTTATTTTATTATTTATAAC+CGG | + | chr4_2:51259118-51259137 | None:intergenic | 5.0% |
| !! | ATTATAATTGTTTAAATAAA+TGG | + | chr4_2:51259215-51259234 | None:intergenic | 5.0% |
| TCTTGGGTACAGCAACAGGT+AGG | + | chr4_2:51255928-51255947 | None:intergenic | 50.0% | |
| GAGTCGTCCAAACGTGGAAT+TGG | - | chr4_2:51256248-51256267 | Msa0605410:CDS | 50.0% | |
| ACAACTGAGCTAAGCTCACG+AGG | + | chr4_2:51256479-51256498 | None:intergenic | 50.0% | |
| CTACCCCCGTCCCTAATTAT+AGG | - | chr4_2:51256689-51256708 | Msa0605410:CDS | 50.0% | |
| GCTCCTATAATTAGGGACGG+GGG | + | chr4_2:51256695-51256714 | None:intergenic | 50.0% | |
| GGCTCCTATAATTAGGGACG+GGG | + | chr4_2:51256696-51256715 | None:intergenic | 50.0% | |
| TTAGCAGAGTCTCATTCGGC+TGG | - | chr4_2:51257133-51257152 | Msa0605410:intron | 50.0% | |
| GTTGACGGAAGGAAAAGACC+AGG | - | chr4_2:51259601-51259620 | Msa0605410:intron | 50.0% | |
| TCAAAGACCATGGGATGGGT+TGG | - | chr4_2:51260164-51260183 | Msa0605410:intron | 50.0% | |
| TAGTAGACCAACCCATCCCA+TGG | + | chr4_2:51260174-51260193 | None:intergenic | 50.0% | |
| GACTTTCGAAGGGGAATGCA+TGG | - | chr4_2:51260290-51260309 | Msa0605410:intron | 50.0% | |
| GTTCCTCGTTGAAAACGGCT+TGG | + | chr4_2:51260318-51260337 | None:intergenic | 50.0% | |
| CCGTCATAACCAGGATGTGA+TGG | + | chr4_2:51260349-51260368 | None:intergenic | 50.0% | |
| GCTCTCAAACCATTTCCCGA+TGG | - | chr4_2:51260556-51260575 | Msa0605410:CDS | 50.0% | |
| TGGGTCTTGGGTACAGCAAC+AGG | + | chr4_2:51255932-51255951 | None:intergenic | 55.0% | |
| TGTTGCTGTACCCAAGACCC+AGG | - | chr4_2:51255931-51255950 | Msa0605410:CDS | 55.0% | |
| TCGAAAGTCGTGCTGCCACA+CGG | + | chr4_2:51260279-51260298 | None:intergenic | 55.0% | |
| TGTGGCAGCACGACTTTCGA+AGG | - | chr4_2:51260279-51260298 | Msa0605410:intron | 55.0% | |
| GTGGCAGCACGACTTTCGAA+GGG | - | chr4_2:51260280-51260299 | Msa0605410:intron | 55.0% | |
| TGGCAGCACGACTTTCGAAG+GGG | - | chr4_2:51260281-51260300 | Msa0605410:intron | 55.0% | |
| !! | GGACCAAGCCGTTTTCAACG+AGG | - | chr4_2:51260312-51260331 | Msa0605410:intron | 55.0% |
| GCATGAAGCCCGTCATAACC+AGG | + | chr4_2:51260358-51260377 | None:intergenic | 55.0% | |
| TTCGCGGAAGCTTATCACGG+TGG | + | chr4_2:51260495-51260514 | None:intergenic | 55.0% | |
| CCAGCGTTCAGGCTTCGTGT+CGG | - | chr4_2:51256290-51256309 | Msa0605410:CDS | 60.0% | |
| CAGGTGAGGGAGTTGACGGA+AGG | - | chr4_2:51259590-51259609 | Msa0605410:intron | 60.0% | |
| CGAGGTGTGCCATCGGGAAA+TGG | + | chr4_2:51260568-51260587 | None:intergenic | 60.0% | |
| CCGACACGAAGCCTGAACGC+TGG | + | chr4_2:51256293-51256312 | None:intergenic | 65.0% | |
| CCAAACGGGGCGGCTGTCTC+CGG | - | chr4_2:51259968-51259987 | Msa0605410:intron | 70.0% | |
| CCGGAGACAGCCGCCCCGTT+TGG | + | chr4_2:51259971-51259990 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 51255755 | 51260591 | 51255755 | ID=Msa0605410;Name=Msa0605410 |
| chr4_2 | mRNA | 51255755 | 51260591 | 51255755 | ID=Msa0605410-mRNA-1;Parent=Msa0605410;Name=Msa0605410-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0|0|1|1|1|2|0|431 |
| chr4_2 | exon | 51260394 | 51260591 | 51260394 | ID=Msa0605410-mRNA-1:exon:12250;Parent=Msa0605410-mRNA-1 |
| chr4_2 | exon | 51255755 | 51256852 | 51255755 | ID=Msa0605410-mRNA-1:exon:12249;Parent=Msa0605410-mRNA-1 |
| chr4_2 | CDS | 51260394 | 51260591 | 51260394 | ID=Msa0605410-mRNA-1:cds;Parent=Msa0605410-mRNA-1 |
| chr4_2 | CDS | 51255755 | 51256852 | 51255755 | ID=Msa0605410-mRNA-1:cds;Parent=Msa0605410-mRNA-1 |
| Gene Sequence |
| Protein sequence |
