Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0121910 | sp|P08688|ALB2_PEA | 37.500 | 240 | 108 | 5 | 6 | 226 | 7 | 223 | 3.60e-41 | 147 |
| Msa0121910 | sp|P08688|ALB2_PEA | 40.845 | 213 | 87 | 6 | 155 | 351 | 7 | 196 | 1.56e-39 | 142 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0121910 | G7IBL7 | 75.962 | 208 | 16 | 2 | 155 | 351 | 6 | 190 | 5.26e-101 | 306 |
| Msa0121910 | G7IBL7 | 88.462 | 208 | 10 | 2 | 1 | 194 | 1 | 208 | 3.15e-126 | 370 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0012820 | Msa0121910 | 0.813608 | 2.348258e-51 | -8.615850e-47 |
| Msa0014590 | Msa0121910 | 0.800940 | 1.138461e-48 | -8.615850e-47 |
| Msa0059880 | Msa0121910 | 0.833498 | 5.153325e-56 | -8.615850e-47 |
| Msa0078200 | Msa0121910 | 0.804732 | 1.875626e-49 | -8.615850e-47 |
| Msa0121910 | Msa0150910 | 0.820333 | 7.251086e-53 | -8.615850e-47 |
| Msa0121910 | Msa0170760 | 0.817441 | 3.292672e-52 | -8.615850e-47 |
| Msa0121910 | Msa0216760 | 0.818014 | 2.444890e-52 | -8.615850e-47 |
| Msa0121910 | Msa0260190 | -0.801904 | 7.223263e-49 | -8.615850e-47 |
| Msa0121910 | Msa0261400 | 0.808389 | 3.171850e-50 | -8.615850e-47 |
| Msa0121910 | Msa0278950 | 0.810676 | 1.023732e-50 | -8.615850e-47 |
| Msa0121910 | Msa0343720 | 0.805507 | 1.291319e-49 | -8.615850e-47 |
| Msa0121910 | Msa0396860 | 0.820094 | 8.225340e-53 | -8.615850e-47 |
| Msa0121910 | Msa0448310 | 0.803531 | 3.334900e-49 | -8.615850e-47 |
| Msa0121910 | Msa0464300 | 0.806381 | 8.454673e-50 | -8.615850e-47 |
| Msa0121910 | Msa0469550 | 0.802304 | 5.978295e-49 | -8.615850e-47 |
| Msa0121910 | Msa0491770 | 0.808165 | 3.540647e-50 | -8.615850e-47 |
| Msa0121910 | Msa0538520 | 0.800335 | 1.512674e-48 | -8.615850e-47 |
| Msa0121910 | Msa0549540 | -0.808199 | 3.482953e-50 | -8.615850e-47 |
| Msa0121910 | Msa0579530 | 0.808424 | 3.118017e-50 | -8.615850e-47 |
| Msa0121910 | Msa0584970 | 0.815910 | 7.257853e-52 | -8.615850e-47 |
| Msa0121910 | Msa0605410 | 0.833601 | 4.856069e-56 | -8.615850e-47 |
| Msa0121910 | Msa0644630 | -0.800295 | 1.541025e-48 | -8.615850e-47 |
| Msa0121910 | Msa0645060 | 0.839197 | 1.829963e-57 | -8.615850e-47 |
| Msa0121910 | Msa0645120 | 0.810841 | 9.433604e-51 | -8.615850e-47 |
| Msa0121910 | Msa0645150 | 0.812514 | 4.080498e-51 | -8.615850e-47 |
| Msa0121910 | Msa0646190 | -0.803747 | 3.007161e-49 | -8.615850e-47 |
| Msa0121910 | Msa0646210 | 0.802213 | 6.240612e-49 | -8.615850e-47 |
| Msa0121910 | Msa0670360 | 0.811854 | 5.683424e-51 | -8.615850e-47 |
| Msa0121910 | Msa0671490 | 0.813243 | 2.824427e-51 | -8.615850e-47 |
| Msa0121910 | Msa0676200 | 0.817438 | 3.296992e-52 | -8.615850e-47 |
| Msa0121910 | Msa0684560 | 0.837651 | 4.582584e-57 | -8.615850e-47 |
| Msa0121910 | Msa0735130 | 0.805971 | 1.031527e-49 | -8.615850e-47 |
| Msa0121910 | Msa0758150 | 0.800862 | 1.181086e-48 | -8.615850e-47 |
| Msa0121910 | Msa0768720 | 0.805934 | 1.050442e-49 | -8.615850e-47 |
| Msa0121910 | Msa0814160 | 0.800837 | 1.194912e-48 | -8.615850e-47 |
| Msa0121910 | Msa0824860 | 0.809611 | 1.736804e-50 | -8.615850e-47 |
| Msa0121910 | Msa0864160 | 0.802486 | 5.483150e-49 | -8.615850e-47 |
| Msa0121910 | Msa0883640 | 0.805515 | 1.286326e-49 | -8.615850e-47 |
| Msa0121910 | Msa0893840 | 0.805582 | 1.244937e-49 | -8.615850e-47 |
| Msa0121910 | Msa0902340 | 0.809770 | 1.605192e-50 | -8.615850e-47 |
| Msa0121910 | Msa0910830 | 0.814833 | 1.259568e-51 | -8.615850e-47 |
| Msa0121910 | Msa0960090 | 0.807182 | 5.728148e-50 | -8.615850e-47 |
| Msa0121910 | Msa0985700 | 0.806264 | 8.952039e-50 | -8.615850e-47 |
| Msa0121910 | Msa1024350 | 0.803450 | 3.465596e-49 | -8.615850e-47 |
| Msa0121910 | Msa1026050 | 0.841619 | 4.257452e-58 | -8.615850e-47 |
| Msa0121910 | Msa1041630 | 0.800071 | 1.711622e-48 | -8.615850e-47 |
| Msa0121910 | Msa1061670 | 0.814003 | 1.922236e-51 | -8.615850e-47 |
| Msa0121910 | Msa1076830 | 0.817054 | 4.022936e-52 | -8.615850e-47 |
| Msa0121910 | Msa1081610 | 0.803316 | 3.694940e-49 | -8.615850e-47 |
| Msa0121910 | Msa1106960 | 0.803257 | 3.800565e-49 | -8.615850e-47 |
| Msa0121910 | Msa1109890 | 0.823280 | 1.507989e-53 | -8.615850e-47 |
| Msa0121910 | Msa1164240 | 0.811991 | 5.308266e-51 | -8.615850e-47 |
| Msa0121910 | Msa1216600 | 0.821373 | 4.179830e-53 | -8.615850e-47 |
| Msa0121910 | Msa1286420 | 0.817729 | 2.835776e-52 | -8.615850e-47 |
| Msa0121910 | Msa1296870 | 0.816878 | 4.407519e-52 | -8.615850e-47 |
| Msa0121910 | Msa1300610 | 0.824440 | 8.062467e-54 | -8.615850e-47 |
| Msa0121910 | Msa1323160 | 0.808878 | 2.494785e-50 | -8.615850e-47 |
| Msa0121910 | Msa1329740 | 0.802201 | 6.277004e-49 | -8.615850e-47 |
| Msa0121910 | Msa1355330 | 0.813473 | 2.514540e-51 | -8.615850e-47 |
| Msa0121910 | Msa1357490 | 0.816775 | 4.646670e-52 | -8.615850e-47 |
| Msa0121910 | Msa1357860 | 0.804297 | 2.311783e-49 | -8.615850e-47 |
| Msa0121910 | Msa1359890 | -0.808351 | 3.231951e-50 | -8.615850e-47 |
| Msa0121910 | Msa1376070 | 0.821538 | 3.829274e-53 | -8.615850e-47 |
| Msa0121910 | Msa1377520 | 0.825103 | 5.626509e-54 | -8.615850e-47 |
| Msa0121910 | Msa1378400 | 0.808265 | 3.371790e-50 | -8.615850e-47 |
| Msa0121910 | Msa1393440 | 0.801809 | 7.557249e-49 | -8.615850e-47 |
| Msa0121910 | Msa1421130 | 0.801967 | 7.013800e-49 | -8.615850e-47 |
| Msa0121910 | Msa1426420 | 0.808526 | 2.965606e-50 | -8.615850e-47 |
| Msa0121910 | Msa1456600 | 0.816361 | 5.753802e-52 | -8.615850e-47 |
| Msa0121910 | Msa1459610 | 0.835188 | 1.941076e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0121910 | MtrunA17_Chr1g0181421 | 88.462 | 208 | 10 | 2 | 1 | 194 | 1 | 208 | 6.07e-130 | 370 |
| Msa0121910 | MtrunA17_Chr1g0181421 | 75.962 | 208 | 16 | 2 | 155 | 351 | 6 | 190 | 1.01e-104 | 306 |
| Msa0121910 | MtrunA17_Chr6g0480031 | 47.222 | 216 | 91 | 4 | 1 | 193 | 1 | 216 | 1.21e-55 | 181 |
| Msa0121910 | MtrunA17_Chr6g0480031 | 43.458 | 214 | 81 | 3 | 155 | 351 | 6 | 196 | 1.15e-48 | 163 |
| Msa0121910 | MtrunA17_Chr6g0479661 | 48.500 | 200 | 83 | 3 | 1 | 180 | 1 | 200 | 2.05e-55 | 180 |
| Msa0121910 | MtrunA17_Chr6g0479661 | 48.256 | 172 | 72 | 2 | 197 | 351 | 25 | 196 | 2.57e-49 | 164 |
| Msa0121910 | MtrunA17_Chr6g0468881 | 47.170 | 212 | 91 | 6 | 6 | 196 | 5 | 216 | 5.05e-51 | 169 |
| Msa0121910 | MtrunA17_Chr6g0468881 | 39.815 | 216 | 91 | 6 | 152 | 351 | 2 | 194 | 6.90e-39 | 137 |
| Msa0121910 | MtrunA17_Chr6g0468931 | 44.712 | 208 | 94 | 6 | 6 | 194 | 5 | 210 | 1.23e-48 | 163 |
| Msa0121910 | MtrunA17_Chr6g0468931 | 37.674 | 215 | 95 | 5 | 153 | 351 | 3 | 194 | 7.73e-39 | 137 |
| Msa0121910 | MtrunA17_Chr6g0467741 | 43.750 | 208 | 98 | 5 | 4 | 194 | 3 | 208 | 1.50e-46 | 157 |
| Msa0121910 | MtrunA17_Chr6g0467741 | 37.736 | 212 | 95 | 4 | 153 | 350 | 3 | 191 | 5.10e-39 | 138 |
| Msa0121910 | MtrunA17_Chr8g0352561 | 42.308 | 208 | 101 | 5 | 6 | 194 | 281 | 488 | 4.50e-45 | 161 |
| Msa0121910 | MtrunA17_Chr8g0352561 | 39.336 | 211 | 91 | 5 | 155 | 351 | 281 | 468 | 1.63e-40 | 149 |
| Msa0121910 | MtrunA17_Chr8g0352561 | 30.131 | 229 | 110 | 7 | 61 | 270 | 286 | 483 | 1.61e-15 | 77.4 |
| Msa0121910 | MtrunA17_Chr8g0352561 | 30.556 | 216 | 102 | 9 | 112 | 303 | 281 | 472 | 7.57e-15 | 75.5 |
| Msa0121910 | MtrunA17_Chr6g0469111 | 40.314 | 191 | 96 | 4 | 6 | 178 | 7 | 197 | 5.07e-40 | 140 |
| Msa0121910 | MtrunA17_Chr6g0469111 | 37.264 | 212 | 95 | 6 | 155 | 351 | 7 | 195 | 4.29e-37 | 133 |
| Msa0121910 | MtrunA17_Chr6g0469111 | 31.818 | 176 | 85 | 7 | 139 | 303 | 48 | 199 | 1.22e-14 | 72.4 |
| Msa0121910 | MtrunA17_Chr6g0469081 | 39.791 | 191 | 97 | 4 | 6 | 178 | 7 | 197 | 1.00e-38 | 137 |
| Msa0121910 | MtrunA17_Chr6g0469081 | 36.792 | 212 | 96 | 6 | 155 | 351 | 7 | 195 | 2.04e-35 | 129 |
| Msa0121910 | MtrunA17_Chr6g0469081 | 31.250 | 176 | 86 | 7 | 139 | 303 | 48 | 199 | 1.97e-13 | 68.9 |
| Msa0121910 | MtrunA17_Chr7g0265911 | 40.284 | 211 | 103 | 9 | 6 | 194 | 7 | 216 | 6.11e-37 | 133 |
| Msa0121910 | MtrunA17_Chr7g0265911 | 38.389 | 211 | 93 | 6 | 155 | 350 | 7 | 195 | 4.15e-36 | 130 |
| Msa0121910 | MtrunA17_Chr7g0265911 | 30.556 | 216 | 100 | 11 | 112 | 301 | 7 | 198 | 3.06e-15 | 74.3 |
| Msa0121910 | MtrunA17_Chr6g0468991 | 36.967 | 211 | 107 | 6 | 1 | 193 | 1 | 203 | 2.28e-36 | 130 |
| Msa0121910 | MtrunA17_Chr6g0468991 | 34.682 | 173 | 94 | 4 | 194 | 351 | 22 | 190 | 1.76e-26 | 104 |
| Msa0121910 | MtrunA17_Chr6g0468991 | 24.444 | 225 | 126 | 7 | 121 | 325 | 16 | 216 | 2.11e-14 | 71.6 |
| Msa0121910 | MtrunA17_Chr6g0469021 | 39.604 | 202 | 101 | 7 | 1 | 183 | 1 | 200 | 5.69e-36 | 130 |
| Msa0121910 | MtrunA17_Chr6g0469021 | 32.864 | 213 | 102 | 7 | 155 | 351 | 6 | 193 | 2.47e-25 | 101 |
| Msa0121910 | MtrunA17_Chr6g0469031 | 38.889 | 198 | 101 | 7 | 1 | 180 | 1 | 196 | 1.98e-34 | 125 |
| Msa0121910 | MtrunA17_Chr6g0469031 | 32.547 | 212 | 103 | 6 | 155 | 351 | 6 | 192 | 1.90e-25 | 102 |
| Msa0121910 | MtrunA17_Chr6g0469031 | 27.004 | 237 | 126 | 8 | 112 | 325 | 6 | 218 | 4.21e-13 | 67.8 |
| Msa0121910 | MtrunA17_Chr6g0466651 | 38.265 | 196 | 101 | 5 | 6 | 181 | 7 | 202 | 1.82e-32 | 121 |
| Msa0121910 | MtrunA17_Chr6g0466651 | 38.389 | 211 | 94 | 7 | 155 | 350 | 7 | 196 | 1.72e-31 | 118 |
| Msa0121910 | MtrunA17_Chr6g0466651 | 33.987 | 153 | 89 | 4 | 6 | 150 | 67 | 215 | 7.71e-17 | 79.0 |
| Msa0121910 | MtrunA17_Chr6g0468921 | 40.000 | 165 | 75 | 7 | 50 | 193 | 4 | 165 | 6.20e-26 | 102 |
| Msa0121910 | MtrunA17_Chr6g0468921 | 36.054 | 147 | 77 | 4 | 222 | 351 | 4 | 150 | 1.31e-21 | 90.5 |
| Msa0121910 | MtrunA17_Chr6g0468901 | 48.837 | 129 | 52 | 5 | 78 | 194 | 195 | 321 | 1.23e-25 | 105 |
| Msa0121910 | MtrunA17_Chr6g0468901 | 29.102 | 323 | 187 | 12 | 6 | 304 | 5 | 309 | 3.52e-25 | 103 |
| Msa0121910 | MtrunA17_Chr6g0468901 | 28.617 | 311 | 146 | 13 | 108 | 350 | 1 | 303 | 1.30e-20 | 91.3 |
| Msa0121910 | MtrunA17_Chr7g0218191 | 39.344 | 122 | 66 | 2 | 6 | 119 | 7 | 128 | 4.90e-20 | 85.1 |
| Msa0121910 | MtrunA17_Chr7g0218191 | 32.414 | 145 | 62 | 4 | 155 | 286 | 7 | 128 | 2.68e-14 | 68.9 |
| Msa0121910 | MtrunA17_Chr4g0057111 | 50.667 | 75 | 35 | 2 | 271 | 343 | 6 | 80 | 4.20e-15 | 71.2 |
| Msa0121910 | MtrunA17_Chr4g0057111 | 47.500 | 80 | 32 | 2 | 99 | 168 | 1 | 80 | 1.02e-12 | 64.7 |
| Msa0121910 | MtrunA17_Chr6g0469061 | 40.659 | 91 | 45 | 3 | 99 | 180 | 1 | 91 | 3.68e-11 | 59.7 |
| Msa0121910 | MtrunA17_Chr6g0469051 | 39.362 | 94 | 48 | 3 | 99 | 183 | 1 | 94 | 6.43e-11 | 58.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 62 sgRNAs with CRISPR-Local
Find 476 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCGGTACGGTCTTTGAAAA+TGG | 0.203555 | 1_3:+48130952 | Msa0121910:CDS |
| CTCGGTACGGTCTTTGAAAA+TGG | 0.203555 | 1_3:+48138787 | Msa0121910:CDS |
| ATCCGGAGCGAAATCTATTT+TGG | 0.242862 | 1_3:-48138554 | None:intergenic |
| ATCCGGAGAGAAATCTATTT+TGG | 0.256716 | 1_3:-48130719 | None:intergenic |
| TTTAACAACACGATCCTTCT+TGG | 0.279901 | 1_3:-48130575 | None:intergenic |
| TTTAACAACACGATCCTTCT+TGG | 0.279901 | 1_3:-48138410 | None:intergenic |
| ACTCATTACTCCATTCGTTC+TGG | 0.346885 | 1_3:+48130916 | Msa0121910:CDS |
| ACTCATTACTCCATTCGTTC+TGG | 0.346885 | 1_3:+48138751 | Msa0121910:CDS |
| AATGGTGTTTCATCAAGAAA+TGG | 0.395080 | 1_3:-48130625 | None:intergenic |
| AATGGTGTTTCATCAAGAAA+TGG | 0.395080 | 1_3:-48138460 | None:intergenic |
| TCCAGAGAAGATTATTGCTT+CGG | 0.411108 | 1_3:-48138521 | None:intergenic |
| AACATGGTAGTGATTGGAAC+AGG | 0.421529 | 1_3:-48130766 | None:intergenic |
| GTTACGTGTTCAAGAAGAAA+AGG | 0.439700 | 1_3:+48138359 | Msa0121910:intron |
| GTTACGTGTTCAAGAAGAAA+AGG | 0.446425 | 1_3:+48130524 | Msa0121910:CDS |
| ACACGATCCTTCTTGGCTCC+TGG | 0.452509 | 1_3:-48138403 | None:intergenic |
| CAATGGAACATGGTAGTGAT+TGG | 0.462327 | 1_3:-48130772 | None:intergenic |
| GAATAAGAAAACATTATGTC+CGG | 0.469058 | 1_3:-48130845 | None:intergenic |
| GAATAAGAAAACATTATGTC+CGG | 0.469058 | 1_3:-48138680 | None:intergenic |
| ACCGAAGCAATCATCTTCTC+TGG | 0.471293 | 1_3:+48130685 | Msa0121910:CDS |
| TGCAGTTGTGAATTATGCTC+CGG | 0.478704 | 1_3:+48130549 | Msa0121910:CDS |
| TGATGAAACACCATTTGAAA+AGG | 0.482259 | 1_3:+48130633 | Msa0121910:CDS |
| TGATGAAACACCATTTGAAA+AGG | 0.482259 | 1_3:+48138468 | Msa0121910:CDS |
| ACCGAAGCAATAATCTTCTC+TGG | 0.483775 | 1_3:+48138520 | Msa0121910:CDS |
| GACAATACAATCACCTTCGT+TGG | 0.494467 | 1_3:-48131055 | None:intergenic |
| GTTCAAGAAGAAAAGGTTTG+CGG | 0.504927 | 1_3:+48138366 | Msa0121910:intron |
| GCCAGAGAAGATGATTGCTT+CGG | 0.505795 | 1_3:-48130686 | None:intergenic |
| AACAGGGCCATCGAGTAAAT+CGG | 0.507747 | 1_3:-48130749 | None:intergenic |
| AACAGGGCCATCGAGTAAAT+CGG | 0.507747 | 1_3:-48138584 | None:intergenic |
| AGTAAATCGGTATCTGAATC+CGG | 0.514277 | 1_3:-48130736 | None:intergenic |
| AGTAAATCGGTATCTGAATC+CGG | 0.514277 | 1_3:-48138571 | None:intergenic |
| GCGGTTGTGAATTATGCTCC+AGG | 0.516853 | 1_3:+48138385 | Msa0121910:CDS |
| ACACGATCCTTCTTGGCTCC+CGG | 0.519674 | 1_3:-48130568 | None:intergenic |
| TGTCAATGGTAGAGTAAAGT+TGG | 0.520266 | 1_3:+48131074 | Msa0121910:CDS |
| GACGCTGCAATTAAGTGGAC+CGG | 0.527798 | 1_3:+48138661 | Msa0121910:CDS |
| AAACCATCGGAAGTATGAAT+CGG | 0.529141 | 1_3:-48130601 | None:intergenic |
| AAACCATCGGAAGTATGAAT+CGG | 0.529141 | 1_3:-48138436 | None:intergenic |
| TTCGGTGCCTTCTGTCTCAA+AGG | 0.532520 | 1_3:-48138503 | None:intergenic |
| GAATAGACGCTGCAATTAAG+TGG | 0.535911 | 1_3:+48138656 | Msa0121910:CDS |
| AGGAAATGAGTATGTTCGTA+TGG | 0.536361 | 1_3:+48138705 | Msa0121910:CDS |
| GAAGGTGATTGTATTGTCAA+TGG | 0.538827 | 1_3:+48131060 | Msa0121910:CDS |
| TACCATGTTCCATTGTCTCA+AGG | 0.539896 | 1_3:+48130780 | Msa0121910:CDS |
| TGCCAAAATAGATTTCTCTC+CGG | 0.543347 | 1_3:+48130717 | Msa0121910:CDS |
| GAATTGACGCTGCAATTAAG+TGG | 0.544957 | 1_3:+48130821 | Msa0121910:CDS |
| AAGCCGATTCATACTTCCGA+TGG | 0.550807 | 1_3:+48130598 | Msa0121910:CDS |
| AAGCCGATTCATACTTCCGA+TGG | 0.550807 | 1_3:+48138433 | Msa0121910:CDS |
| TTATGCTCCGGGAGCCAAGA+AGG | 0.560419 | 1_3:+48130561 | Msa0121910:CDS |
| AAAACGTTCCCTTGAGACAA+TGG | 0.561335 | 1_3:-48130789 | None:intergenic |
| TGCCAAAATAGATTTCGCTC+CGG | 0.565519 | 1_3:+48138552 | Msa0121910:CDS |
| ATCAAGAAATGGAAAACCAT+CGG | 0.570603 | 1_3:-48130614 | None:intergenic |
| ATCAAGAAATGGAAAACCAT+CGG | 0.570603 | 1_3:-48138449 | None:intergenic |
| GATTGTGCCTTTGAGACAGA+AGG | 0.572261 | 1_3:+48130661 | Msa0121910:intron |
| GATTGTGCCTTTGAGACAGA+AGG | 0.572261 | 1_3:+48138496 | Msa0121910:CDS |
| GCAGTTGTGAATTATGCTCC+GGG | 0.572517 | 1_3:+48130550 | Msa0121910:CDS |
| ACCATGTTCCATTGTCTCAA+GGG | 0.576700 | 1_3:+48130781 | Msa0121910:CDS |
| GACGCTGCAATTAAGTGGAC+CGG | 0.578299 | 1_3:+48130826 | Msa0121910:CDS |
| GAAATGCAGTATCAATGACT+TGG | 0.591249 | 1_3:-48130480 | None:intergenic |
| TTATGCTCCAGGAGCCAAGA+AGG | 0.592184 | 1_3:+48138396 | Msa0121910:CDS |
| TCAGATACCGATTTACTCGA+TGG | 0.596226 | 1_3:+48130742 | Msa0121910:CDS |
| TCAGATACCGATTTACTCGA+TGG | 0.596226 | 1_3:+48138577 | Msa0121910:CDS |
| CGTATTGATATTTCCAACGA+AGG | 0.604655 | 1_3:+48131042 | Msa0121910:CDS |
| TCCCTTGAGACAATGGAACA+TGG | 0.652701 | 1_3:-48130782 | None:intergenic |
| ACATGGTAGTGATTGGAACA+GGG | 0.671114 | 1_3:-48130765 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATCTTTTTTTATATCAAAA+TGG | + | chr1_3:48132523-48132542 | Msa0121910:intron | 10.0% |
| !! | CTAAATAATATAAATATATG+TGG | - | chr1_3:48133935-48133954 | None:intergenic | 10.0% |
| !! | TCAATTGAAAAAAAATATAA+AGG | - | chr1_3:48134065-48134084 | None:intergenic | 10.0% |
| !! | ATTTAACTAGTAATATATAT+TGG | + | chr1_3:48135190-48135209 | Msa0121910:intron | 10.0% |
| !! | AATGAAAATAAAAAAATATC+AGG | + | chr1_3:48137052-48137071 | Msa0121910:intron | 10.0% |
| !!! | TTTTTTTTTAATAATAACCA+TGG | - | chr1_3:48137349-48137368 | None:intergenic | 10.0% |
| !! | TTAATATTTGTGAAATTAAT+TGG | + | chr1_3:48137718-48137737 | Msa0121910:intron | 10.0% |
| !!! | TATTCTCTTTAAAAAAAAAA+TGG | - | chr1_3:48137835-48137854 | None:intergenic | 10.0% |
| !!! | TTTTATTTTATTCAATGTAA+GGG | - | chr1_3:48138267-48138286 | None:intergenic | 10.0% |
| !!! | TTTTTATTTTATTCAATGTA+AGG | - | chr1_3:48138268-48138287 | None:intergenic | 10.0% |
| !!! | AACAATCTTTTTTTAATAGA+AGG | - | chr1_3:48131730-48131749 | None:intergenic | 15.0% |
| !!! | CACAATTAAATTTTAGTTTT+GGG | - | chr1_3:48132399-48132418 | None:intergenic | 15.0% |
| !!! | TTTTAAAAATAGACTTTTGA+TGG | + | chr1_3:48132441-48132460 | Msa0121910:intron | 15.0% |
| !!! | TTTTTTTATATCAAAATGGT+AGG | + | chr1_3:48132527-48132546 | Msa0121910:intron | 15.0% |
| !!! | GTACATAATTATTTTGAATA+TGG | - | chr1_3:48132675-48132694 | None:intergenic | 15.0% |
| !! | TCATTAATAAGTCATAATTT+AGG | + | chr1_3:48132706-48132725 | Msa0121910:intron | 15.0% |
| !! | CATTAATAAGTCATAATTTA+GGG | + | chr1_3:48132707-48132726 | Msa0121910:intron | 15.0% |
| !! | CAAATATTATTGAATTGAAA+TGG | - | chr1_3:48132742-48132761 | None:intergenic | 15.0% |
| !! | TTTCAATTCAATAATATTTG+TGG | + | chr1_3:48132742-48132761 | Msa0121910:intron | 15.0% |
| !! | TTATAACAAATATCAAACAA+AGG | + | chr1_3:48133521-48133540 | Msa0121910:intron | 15.0% |
| !! | GAAAACTAAAATAAACATAA+GGG | - | chr1_3:48133782-48133801 | None:intergenic | 15.0% |
| !! | TGAAAACTAAAATAAACATA+AGG | - | chr1_3:48133783-48133802 | None:intergenic | 15.0% |
| !! | AATAATATAAATATATGTGG+AGG | - | chr1_3:48133932-48133951 | None:intergenic | 15.0% |
| !! | TATATGTTAAAAAATGACTA+AGG | - | chr1_3:48135285-48135304 | None:intergenic | 15.0% |
| !! | ATGATTAAAGATACTAAAAT+AGG | + | chr1_3:48135473-48135492 | Msa0121910:intron | 15.0% |
| !!! | ATCTATAACTTACTTTTTTT+TGG | + | chr1_3:48135563-48135582 | Msa0121910:intron | 15.0% |
| !!! | GCTTTTAAATTTACTATTTT+GGG | + | chr1_3:48135746-48135765 | Msa0121910:intron | 15.0% |
| !! | AAGTTAATAGTATTAATTAG+GGG | - | chr1_3:48135909-48135928 | None:intergenic | 15.0% |
| !! | CAAGTTAATAGTATTAATTA+GGG | - | chr1_3:48135910-48135929 | None:intergenic | 15.0% |
| !! | ACAAGTTAATAGTATTAATT+AGG | - | chr1_3:48135911-48135930 | None:intergenic | 15.0% |
| !!! | ATAAGGAATTTTTTTTTTAG+TGG | + | chr1_3:48136793-48136812 | Msa0121910:intron | 15.0% |
| !!! | TAAGGAATTTTTTTTTTAGT+GGG | + | chr1_3:48136794-48136813 | Msa0121910:intron | 15.0% |
| !! | TCTTTAATATTTGTAACTTA+AGG | - | chr1_3:48136922-48136941 | None:intergenic | 15.0% |
| !! | AAAAAAATTATTCAAAATGG+TGG | + | chr1_3:48137363-48137382 | Msa0121910:intron | 15.0% |
| !!! | AAGCAAATTTATTTTAAGAT+GGG | - | chr1_3:48137525-48137544 | None:intergenic | 15.0% |
| !!! | AAAGCAAATTTATTTTAAGA+TGG | - | chr1_3:48137526-48137545 | None:intergenic | 15.0% |
| !!! | TACTTATATTTCTATTTACT+TGG | + | chr1_3:48137872-48137891 | Msa0121910:intron | 15.0% |
| !!! | AGCTTTCAAATTTATTATTT+TGG | + | chr1_3:48138147-48138166 | Msa0121910:intron | 15.0% |
| !!! | GCTTTCAAATTTATTATTTT+GGG | + | chr1_3:48138148-48138167 | Msa0121910:intron | 15.0% |
| !!! | CATAATGTTTTCTTATTCAA+AGG | + | chr1_3:48130850-48130869 | Msa0121910:CDS | 20.0% |
| !! | ATTAGATCTAGAAGTTTAAT+AGG | - | chr1_3:48131128-48131147 | None:intergenic | 20.0% |
| !! | AAGGATAAACTTTATTCTAA+TGG | - | chr1_3:48131525-48131544 | None:intergenic | 20.0% |
| !! | ACAATCAGAATACATAAAAA+AGG | - | chr1_3:48131607-48131626 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTTGTTACAGTTG+AGG | + | chr1_3:48131855-48131874 | Msa0121910:intron | 20.0% |
| !!! | ATCAGAAGAAAAAAATGTTT+TGG | - | chr1_3:48132113-48132132 | None:intergenic | 20.0% |
| !!! | GCACAATTAAATTTTAGTTT+TGG | - | chr1_3:48132400-48132419 | None:intergenic | 20.0% |
| !!! | AAACATTAGTTTTCATTTTC+AGG | + | chr1_3:48132799-48132818 | Msa0121910:intron | 20.0% |
| !! | AGAGACATGATAAAAAAAAA+AGG | - | chr1_3:48133340-48133359 | None:intergenic | 20.0% |
| !! | TATTGAGATACATTCATATA+TGG | + | chr1_3:48133738-48133757 | Msa0121910:intron | 20.0% |
| !! | GAAAACTAAAATAAACGTAT+GGG | - | chr1_3:48133842-48133861 | None:intergenic | 20.0% |
| !! | TGAAAACTAAAATAAACGTA+TGG | - | chr1_3:48133843-48133862 | None:intergenic | 20.0% |
| !!! | GTTTATTTTAGTTTTCAAGT+TGG | + | chr1_3:48133786-48133805 | Msa0121910:intron | 20.0% |
| !! | ATAATATTCCAAAAACGTAA+GGG | - | chr1_3:48133902-48133921 | None:intergenic | 20.0% |
| !! | TATAATATTCCAAAAACGTA+AGG | - | chr1_3:48133903-48133922 | None:intergenic | 20.0% |
| !! | GTCTACCATTTATAATTTAA+GGG | - | chr1_3:48134034-48134053 | None:intergenic | 20.0% |
| !! | TGTCTACCATTTATAATTTA+AGG | - | chr1_3:48134035-48134054 | None:intergenic | 20.0% |
| !! | TTTGAGTAAAAAAATGTCTT+CGG | - | chr1_3:48134125-48134144 | None:intergenic | 20.0% |
| !!! | ATTTTTTTGATGAGATATTG+TGG | + | chr1_3:48134682-48134701 | Msa0121910:intron | 20.0% |
| !! | AAAAATAACTTACAAGATGA+TGG | - | chr1_3:48134730-48134749 | None:intergenic | 20.0% |
| !!! | TGTCTTTTTTATTTCTTTTG+TGG | + | chr1_3:48134749-48134768 | Msa0121910:intron | 20.0% |
| !!! | ACTTTTTTTACTTCTCTTTT+AGG | - | chr1_3:48135027-48135046 | None:intergenic | 20.0% |
| !! | TAATCAAGAGAATATTCTTT+CGG | + | chr1_3:48135075-48135094 | Msa0121910:intron | 20.0% |
| !! | TACTCAATATATAGATATGA+AGG | - | chr1_3:48135164-48135183 | None:intergenic | 20.0% |
| !! | TATCTATATATTGAGTAAGT+TGG | + | chr1_3:48135167-48135186 | Msa0121910:intron | 20.0% |
| !!! | TCTTTAAACAATTTGTTTAG+AGG | - | chr1_3:48135216-48135235 | None:intergenic | 20.0% |
| !!! | CAAACTAAGTCTTTTTTTTA+GGG | - | chr1_3:48135255-48135274 | None:intergenic | 20.0% |
| !!! | ACAAACTAAGTCTTTTTTTT+AGG | - | chr1_3:48135256-48135275 | None:intergenic | 20.0% |
| !!! | TTTTTAACATATAACCAAGT+TGG | + | chr1_3:48135292-48135311 | Msa0121910:intron | 20.0% |
| !!! | TAAATTTGTTAAATCCAACT+TGG | - | chr1_3:48135309-48135328 | None:intergenic | 20.0% |
| !!! | ACTTAATTTGTTAATTTCCT+TGG | + | chr1_3:48135365-48135384 | Msa0121910:intron | 20.0% |
| !!! | AAAATTAGTTTCATTCCAAT+TGG | - | chr1_3:48135399-48135418 | None:intergenic | 20.0% |
| !!! | TGGAATGAAACTAATTTTTA+TGG | + | chr1_3:48135401-48135420 | Msa0121910:intron | 20.0% |
| !!! | GGAATGAAACTAATTTTTAT+GGG | + | chr1_3:48135402-48135421 | Msa0121910:intron | 20.0% |
| !! | AAGTAAGTTATAGATTGAAA+AGG | - | chr1_3:48135558-48135577 | None:intergenic | 20.0% |
| !! | TGTGATCAATATAAAAATGT+GGG | - | chr1_3:48135659-48135678 | None:intergenic | 20.0% |
| !! | TTGTGATCAATATAAAAATG+TGG | - | chr1_3:48135660-48135679 | None:intergenic | 20.0% |
| !!! | GGCTTTTAAATTTACTATTT+TGG | + | chr1_3:48135745-48135764 | Msa0121910:intron | 20.0% |
| !! | AAATGCTAGTAATTTGAAAA+GGG | - | chr1_3:48135865-48135884 | None:intergenic | 20.0% |
| !! | TAAATGCTAGTAATTTGAAA+AGG | - | chr1_3:48135866-48135885 | None:intergenic | 20.0% |
| !! | TTTAATACACATACAAACAA+AGG | + | chr1_3:48135952-48135971 | Msa0121910:intron | 20.0% |
| !! | ATCATAATTTCATAAACCTA+CGG | + | chr1_3:48136408-48136427 | Msa0121910:intron | 20.0% |
| !!! | GTCAAAAAGTTCAATTTTTT+TGG | - | chr1_3:48136442-48136461 | None:intergenic | 20.0% |
| !! | TGTAAAATTAGAACAAAGAA+TGG | + | chr1_3:48136523-48136542 | Msa0121910:intron | 20.0% |
| !!! | AAGGAATTTTTTTTTTAGTG+GGG | + | chr1_3:48136795-48136814 | Msa0121910:intron | 20.0% |
| !!! | ATCTGAAACAAGAAATTTAA+GGG | + | chr1_3:48136993-48137012 | Msa0121910:intron | 20.0% |
| !!! | ACAACGCAAAATTTTATTTT+AGG | + | chr1_3:48137646-48137665 | Msa0121910:intron | 20.0% |
| !!! | CAACGCAAAATTTTATTTTA+GGG | + | chr1_3:48137647-48137666 | Msa0121910:intron | 20.0% |
| !!! | ACTTTATTTGTTATTTTCCT+TGG | + | chr1_3:48138080-48138099 | Msa0121910:intron | 20.0% |
| !! | TTTGAAAGCTAACAATTAAT+TGG | - | chr1_3:48138137-48138156 | None:intergenic | 20.0% |
| !!! | CATAATGTTTTCTTATTCAA+AGG | + | chr1_3:48130850-48130869 | Msa0121910:CDS | 20.0% |
| ! | GAATAAGAAAACATTATGTC+CGG | - | chr1_3:48130848-48130867 | None:intergenic | 25.0% |
| ! | AATTTAGTGACAGAATTAGA+CGG | + | chr1_3:48131231-48131250 | Msa0121910:intron | 25.0% |
| ! | TGTGATTCCTTATGTATTAA+TGG | + | chr1_3:48131624-48131643 | Msa0121910:intron | 25.0% |
| ! | ACAAAGTCCATTAATACATA+AGG | - | chr1_3:48131634-48131653 | None:intergenic | 25.0% |
| ! | GATATAAAACATGTCCAATA+TGG | - | chr1_3:48131693-48131712 | None:intergenic | 25.0% |
| ! | ATCATGACACATAACAAAAA+TGG | + | chr1_3:48131762-48131781 | Msa0121910:intron | 25.0% |
| ! | TCATGACACATAACAAAAAT+GGG | + | chr1_3:48131763-48131782 | Msa0121910:intron | 25.0% |
| !! | CAATACTACGTACATTTTAT+AGG | + | chr1_3:48131887-48131906 | Msa0121910:intron | 25.0% |
| ! | TTAGTATACTTTAGATGAGA+GGG | - | chr1_3:48132020-48132039 | None:intergenic | 25.0% |
| ! | TTTAGTATACTTTAGATGAG+AGG | - | chr1_3:48132021-48132040 | None:intergenic | 25.0% |
| !! | ATTTTCATTGCCAACAAAAA+TGG | - | chr1_3:48132214-48132233 | None:intergenic | 25.0% |
| ! | CTCAACTACTATAAATTCTT+GGG | + | chr1_3:48132345-48132364 | Msa0121910:intron | 25.0% |
| !! | TCTAGCACTTACTATTTTAT+TGG | - | chr1_3:48132570-48132589 | None:intergenic | 25.0% |
| ! | CAATAATATTTGTGGAAGTT+TGG | + | chr1_3:48132750-48132769 | Msa0121910:intron | 25.0% |
| ! | CAAATTCAATGCATTATATG+AGG | + | chr1_3:48133113-48133132 | Msa0121910:intron | 25.0% |
| ! | AAGGCATAAAAATAAATGAC+TGG | - | chr1_3:48133321-48133340 | None:intergenic | 25.0% |
| !! | CAAAATCAAACTTCACATTT+TGG | - | chr1_3:48133598-48133617 | None:intergenic | 25.0% |
| !!! | CAAAATGTGAAGTTTGATTT+TGG | + | chr1_3:48133596-48133615 | Msa0121910:intron | 25.0% |
| ! | ACAATAATATTTGCACACAA+AGG | + | chr1_3:48133676-48133695 | Msa0121910:intron | 25.0% |
| ! | CAATAATATTTGCACACAAA+GGG | + | chr1_3:48133677-48133696 | Msa0121910:intron | 25.0% |
| !!! | ATGTTTTGAAAGTTTCAAGT+TGG | + | chr1_3:48133815-48133834 | Msa0121910:intron | 25.0% |
| ! | TTGAAACTTTCAAAACGTAA+GGG | - | chr1_3:48133873-48133892 | None:intergenic | 25.0% |
| !!! | GACTTTTTTTCGTATCATAT+TGG | + | chr1_3:48134007-48134026 | Msa0121910:intron | 25.0% |
| ! | TTGGTCCCTTAAATTATAAA+TGG | + | chr1_3:48134026-48134045 | Msa0121910:intron | 25.0% |
| ! | ATTATAAATGGTAGACACTT+TGG | + | chr1_3:48134038-48134057 | Msa0121910:intron | 25.0% |
| !! | ACACAATTACAATTTTTGCA+CGG | - | chr1_3:48134574-48134593 | None:intergenic | 25.0% |
| !! | TTTGTAGAAACTTTCTTTTG+TGG | + | chr1_3:48134784-48134803 | Msa0121910:intron | 25.0% |
| ! | AATATTTGCATGTTAGTTGT+GGG | - | chr1_3:48134815-48134834 | None:intergenic | 25.0% |
| !! | CAGAAATTATCTGTGATTTT+TGG | - | chr1_3:48135001-48135020 | None:intergenic | 25.0% |
| ! | TAAAAATGTGGGATTATGAA+AGG | - | chr1_3:48135648-48135667 | None:intergenic | 25.0% |
| ! | CAAAAACAAAATCAAATGAG+TGG | - | chr1_3:48135827-48135846 | None:intergenic | 25.0% |
| ! | AATGCTAGTAATTTGAAAAG+GGG | - | chr1_3:48135864-48135883 | None:intergenic | 25.0% |
| !! | TATTAATTAGGGGTATGTTT+AGG | - | chr1_3:48135899-48135918 | None:intergenic | 25.0% |
| ! | AAGAAATGTGAAAAATGCAA+AGG | + | chr1_3:48136034-48136053 | Msa0121910:intron | 25.0% |
| ! | AGAAATGTGAAAAATGCAAA+GGG | + | chr1_3:48136035-48136054 | Msa0121910:intron | 25.0% |
| ! | CAGGAATATATCATAGAATT+GGG | - | chr1_3:48136325-48136344 | None:intergenic | 25.0% |
| ! | AAAATTAGAACAAAGAATGG+AGG | + | chr1_3:48136526-48136545 | Msa0121910:intron | 25.0% |
| ! | TCTGTTATCTATTGAATATG+TGG | + | chr1_3:48136625-48136644 | Msa0121910:intron | 25.0% |
| !!! | CTGAGCTATAATTTTTTTTG+AGG | + | chr1_3:48136836-48136855 | Msa0121910:intron | 25.0% |
| ! | GGTACATATTAAAGTTATCA+GGG | - | chr1_3:48136901-48136920 | None:intergenic | 25.0% |
| ! | AGGTACATATTAAAGTTATC+AGG | - | chr1_3:48136902-48136921 | None:intergenic | 25.0% |
| ! | AATGTTAGACAATAAAAGAG+AGG | - | chr1_3:48136952-48136971 | None:intergenic | 25.0% |
| !! | CATCTGAAACAAGAAATTTA+AGG | + | chr1_3:48136992-48137011 | Msa0121910:intron | 25.0% |
| ! | AAAAAATATGTGTGAAACCA+TGG | + | chr1_3:48137329-48137348 | Msa0121910:intron | 25.0% |
| ! | TGAAGACTTTGTTAATTTCT+TGG | + | chr1_3:48137751-48137770 | Msa0121910:intron | 25.0% |
| ! | CTCTTTATATAGATGTTATG+TGG | - | chr1_3:48138201-48138220 | None:intergenic | 25.0% |
| ! | CATAACATCTATATAAAGAG+AGG | + | chr1_3:48138201-48138220 | Msa0121910:intron | 25.0% |
| !!! | TTGACATTTTTGTTATTGGA+GGG | - | chr1_3:48138294-48138313 | None:intergenic | 25.0% |
| !!! | ATTGACATTTTTGTTATTGG+AGG | - | chr1_3:48138295-48138314 | None:intergenic | 25.0% |
| !!! | TGGATTGACATTTTTGTTAT+TGG | - | chr1_3:48138298-48138317 | None:intergenic | 25.0% |
| ! | GAATAAGAAAACATTATGTC+CGG | - | chr1_3:48130848-48130867 | None:intergenic | 25.0% |
| ATCAAGAAATGGAAAACCAT+CGG | - | chr1_3:48130617-48130636 | None:intergenic | 30.0% | |
| AATGGTGTTTCATCAAGAAA+TGG | - | chr1_3:48130628-48130647 | None:intergenic | 30.0% | |
| TGATGAAACACCATTTGAAA+AGG | + | chr1_3:48130633-48130652 | Msa0121910:CDS | 30.0% | |
| ! | CAATCTACTTCCTTTTCAAA+TGG | - | chr1_3:48130646-48130665 | None:intergenic | 30.0% |
| !! | AAGGGAACGTTTTTAGAAAA+TGG | + | chr1_3:48130799-48130818 | Msa0121910:CDS | 30.0% |
| !!! | ACTTTTAAAACCAGAACGAA+TGG | - | chr1_3:48130929-48130948 | None:intergenic | 30.0% |
| !!! | TCTGGTTTTAAAAGTTTGCT+CGG | + | chr1_3:48130934-48130953 | Msa0121910:CDS | 30.0% |
| !! | TTTTAAAAGTTTGCTCGGTA+CGG | + | chr1_3:48130939-48130958 | Msa0121910:CDS | 30.0% |
| ! | AATCAAGCTTACGTTTTCAA+AGG | + | chr1_3:48131006-48131025 | Msa0121910:CDS | 30.0% |
| !! | CCACACTTTTTATTACATTG+AGG | - | chr1_3:48131388-48131407 | None:intergenic | 30.0% |
| CCTCAATGTAATAAAAAGTG+TGG | + | chr1_3:48131385-48131404 | Msa0121910:intron | 30.0% | |
| TGGTCAAACATATACATGAA+AGG | - | chr1_3:48131544-48131563 | None:intergenic | 30.0% | |
| ! | AATTGTGCTTTTGTCCATAT+TGG | + | chr1_3:48131676-48131695 | Msa0121910:intron | 30.0% |
| CATGACACATAACAAAAATG+GGG | + | chr1_3:48131764-48131783 | Msa0121910:intron | 30.0% | |
| AAAAACTCCTTAACATAGTG+AGG | - | chr1_3:48131840-48131859 | None:intergenic | 30.0% | |
| !! | AGAGATAGTACCATTTTTGT+TGG | + | chr1_3:48132201-48132220 | Msa0121910:intron | 30.0% |
| CCAAGAATTTATAGTAGTTG+AGG | - | chr1_3:48132347-48132366 | None:intergenic | 30.0% | |
| CCTCAACTACTATAAATTCT+TGG | + | chr1_3:48132344-48132363 | Msa0121910:intron | 30.0% | |
| TGTGTCAATATTTGTATGCA+GGG | - | chr1_3:48132376-48132395 | None:intergenic | 30.0% | |
| !! | GAGAGAGTGTTAAAAAATGA+TGG | + | chr1_3:48132588-48132607 | Msa0121910:intron | 30.0% |
| GAAAAATGCAACTTGATAAG+AGG | - | chr1_3:48132625-48132644 | None:intergenic | 30.0% | |
| !! | ATTTTGGTGAAGTATAGGAT+TGG | + | chr1_3:48132900-48132919 | Msa0121910:intron | 30.0% |
| AATTGACAAAGAAATACGCA+CGG | + | chr1_3:48132924-48132943 | Msa0121910:intron | 30.0% | |
| AATGCATTATATGAGGTCTT+AGG | + | chr1_3:48133120-48133139 | Msa0121910:intron | 30.0% | |
| AGTCTAGACTTGAGTTAAAT+AGG | - | chr1_3:48133452-48133471 | None:intergenic | 30.0% | |
| TTTCATCATATCTCAAACGA+AGG | + | chr1_3:48133571-48133590 | Msa0121910:intron | 30.0% | |
| AACAATCAAGCTTATTCTCA+AGG | - | chr1_3:48133719-48133738 | None:intergenic | 30.0% | |
| ATATGGCTTAATTGCATGTT+TGG | + | chr1_3:48133755-48133774 | Msa0121910:intron | 30.0% | |
| CTTGAAACTTTCAAAACGTA+AGG | - | chr1_3:48133874-48133893 | None:intergenic | 30.0% | |
| !!! | ACGTTTTGAAAGTTTCAAGT+TGG | + | chr1_3:48133875-48133894 | Msa0121910:intron | 30.0% |
| ! | AATACAACCGAAGACATTTT+TGG | + | chr1_3:48134144-48134163 | Msa0121910:intron | 30.0% |
| TCGACAAAAAGGTAACTTAA+GGG | - | chr1_3:48134171-48134190 | None:intergenic | 30.0% | |
| TTCGACAAAAAGGTAACTTA+AGG | - | chr1_3:48134172-48134191 | None:intergenic | 30.0% | |
| TGGTTTATGATAGAACACTA+TGG | - | chr1_3:48134277-48134296 | None:intergenic | 30.0% | |
| ! | CAATGAGTTGGATTCAAATT+TGG | - | chr1_3:48134297-48134316 | None:intergenic | 30.0% |
| TATTAGAGAAACCATTCGAA+AGG | - | chr1_3:48134330-48134349 | None:intergenic | 30.0% | |
| ! | GTTTCTCTAATAGTTTTCCT+AGG | + | chr1_3:48134338-48134357 | Msa0121910:intron | 30.0% |
| AAGAAGAGTAGATCAAATGA+AGG | - | chr1_3:48134393-48134412 | None:intergenic | 30.0% | |
| TTGATCTACTCTTCTTAAGA+CGG | + | chr1_3:48134397-48134416 | Msa0121910:intron | 30.0% | |
| GTAGTGAAAAAAGATAGAAG+AGG | + | chr1_3:48134429-48134448 | Msa0121910:intron | 30.0% | |
| TTGTCCTAAAATTGTATGAG+AGG | + | chr1_3:48134617-48134636 | Msa0121910:intron | 30.0% | |
| TGTCCTAAAATTGTATGAGA+GGG | + | chr1_3:48134618-48134637 | Msa0121910:intron | 30.0% | |
| ! | AAACCCTCTCATACAATTTT+AGG | - | chr1_3:48134624-48134643 | None:intergenic | 30.0% |
| TTTCTCTTGTAAAAAGATGC+AGG | + | chr1_3:48134649-48134668 | Msa0121910:intron | 30.0% | |
| ATATTTGCATGTTAGTTGTG+GGG | - | chr1_3:48134814-48134833 | None:intergenic | 30.0% | |
| GAATATTTGCATGTTAGTTG+TGG | - | chr1_3:48134816-48134835 | None:intergenic | 30.0% | |
| ACATGCAAATATTCTGATCA+AGG | + | chr1_3:48134822-48134841 | Msa0121910:intron | 30.0% | |
| CATGCAAATATTCTGATCAA+GGG | + | chr1_3:48134823-48134842 | Msa0121910:intron | 30.0% | |
| CTAATCTCTCTTGAAATGAA+TGG | - | chr1_3:48134870-48134889 | None:intergenic | 30.0% | |
| !! | TCATATGACTACTTTGAAGT+TGG | + | chr1_3:48134922-48134941 | Msa0121910:intron | 30.0% |
| GACGACAAAGTGAAATTAAT+TGG | + | chr1_3:48135097-48135116 | Msa0121910:intron | 30.0% | |
| TAAACAAGGATCATGTTAAC+CGG | - | chr1_3:48135615-48135634 | None:intergenic | 30.0% | |
| !! | AAGGTTTGGTCTTTTAAACA+AGG | - | chr1_3:48135629-48135648 | None:intergenic | 30.0% |
| AAGCAAAATACGTTTCAGAT+TGG | + | chr1_3:48135678-48135697 | Msa0121910:intron | 30.0% | |
| ! | TTTAAAAGCCACCGATTAAT+TGG | - | chr1_3:48135735-48135754 | None:intergenic | 30.0% |
| CAAATGAGTGGTTACATTAA+GGG | - | chr1_3:48135815-48135834 | None:intergenic | 30.0% | |
| TCAAATGAGTGGTTACATTA+AGG | - | chr1_3:48135816-48135835 | None:intergenic | 30.0% | |
| ATGCTAGTAATTTGAAAAGG+GGG | - | chr1_3:48135863-48135882 | None:intergenic | 30.0% | |
| CATACAAACAAAGGACAATT+TGG | + | chr1_3:48135961-48135980 | Msa0121910:intron | 30.0% | |
| GAAATGTGAAAAATGCAAAG+GGG | + | chr1_3:48136036-48136055 | Msa0121910:intron | 30.0% | |
| AAATGTGAAAAATGCAAAGG+GGG | + | chr1_3:48136037-48136056 | Msa0121910:intron | 30.0% | |
| !!! | GTGTTAGGTGGATTTTTTTT+GGG | - | chr1_3:48136288-48136307 | None:intergenic | 30.0% |
| GCAGGAATATATCATAGAAT+TGG | - | chr1_3:48136326-48136345 | None:intergenic | 30.0% | |
| !!! | TTTTTTGGTGATATAACCGT+AGG | - | chr1_3:48136427-48136446 | None:intergenic | 30.0% |
| ACTGATATCAGAAGAAAGAA+AGG | + | chr1_3:48136724-48136743 | Msa0121910:intron | 30.0% | |
| CTGATATCAGAAGAAAGAAA+GGG | + | chr1_3:48136725-48136744 | Msa0121910:intron | 30.0% | |
| ACTGTATCAAAGTTCTCATA+AGG | + | chr1_3:48136776-48136795 | Msa0121910:intron | 30.0% | |
| CATATTAAAGTTATCAGGGT+CGG | - | chr1_3:48136897-48136916 | None:intergenic | 30.0% | |
| TCTAACATTTGTAACTCCAT+GGG | + | chr1_3:48136963-48136982 | Msa0121910:intron | 30.0% | |
| TATCAGGTACGTGTTTATAT+CGG | + | chr1_3:48137068-48137087 | Msa0121910:intron | 30.0% | |
| !! | TATTTGCTATTAGATCACTC+TGG | + | chr1_3:48137165-48137184 | Msa0121910:intron | 30.0% |
| CTTTAGACCTCTAGATTTAT+TGG | + | chr1_3:48137689-48137708 | Msa0121910:intron | 30.0% | |
| ATTCAGTCCAATAAATCTAG+AGG | - | chr1_3:48137699-48137718 | None:intergenic | 30.0% | |
| TTGAACACGTAACATTCATA+GGG | - | chr1_3:48138352-48138371 | None:intergenic | 30.0% | |
| ATCAAGAAATGGAAAACCAT+CGG | - | chr1_3:48130617-48130636 | None:intergenic | 30.0% | |
| AATGGTGTTTCATCAAGAAA+TGG | - | chr1_3:48130628-48130647 | None:intergenic | 30.0% | |
| TGATGAAACACCATTTGAAA+AGG | + | chr1_3:48130633-48130652 | Msa0121910:CDS | 30.0% | |
| ! | CAATCTACTTCCTTTTCAAA+TGG | - | chr1_3:48130646-48130665 | None:intergenic | 30.0% |
| !! | AAGGGAACGTTTTTAGAAAA+TGG | + | chr1_3:48130799-48130818 | Msa0121910:CDS | 30.0% |
| !!! | ACTTTTAAAACCAGAACGAA+TGG | - | chr1_3:48130929-48130948 | None:intergenic | 30.0% |
| !!! | TCTGGTTTTAAAAGTTTGCT+CGG | + | chr1_3:48130934-48130953 | Msa0121910:CDS | 30.0% |
| !! | TTTTAAAAGTTTGCTCGGTA+CGG | + | chr1_3:48130939-48130958 | Msa0121910:CDS | 30.0% |
| ! | AATCAAGCTTACGTTTTCAA+AGG | + | chr1_3:48131006-48131025 | Msa0121910:CDS | 30.0% |
| GAAATGCAGTATCAATGACT+TGG | - | chr1_3:48130483-48130502 | None:intergenic | 35.0% | |
| GTTACGTGTTCAAGAAGAAA+AGG | + | chr1_3:48130524-48130543 | Msa0121910:CDS | 35.0% | |
| TTTAACAACACGATCCTTCT+TGG | - | chr1_3:48130578-48130597 | None:intergenic | 35.0% | |
| ! | AAACCATCGGAAGTATGAAT+CGG | - | chr1_3:48130604-48130623 | None:intergenic | 35.0% |
| TGCCAAAATAGATTTCTCTC+CGG | + | chr1_3:48130717-48130736 | Msa0121910:CDS | 35.0% | |
| ! | ATCCGGAGAGAAATCTATTT+TGG | - | chr1_3:48130722-48130741 | None:intergenic | 35.0% |
| AGTAAATCGGTATCTGAATC+CGG | - | chr1_3:48130739-48130758 | None:intergenic | 35.0% | |
| AGGAAATGAGTATGTTCGTA+TGG | + | chr1_3:48130870-48130889 | Msa0121910:intron | 35.0% | |
| ! | CGTATTGATATTTCCAACGA+AGG | + | chr1_3:48131042-48131061 | Msa0121910:CDS | 35.0% |
| GAAGGTGATTGTATTGTCAA+TGG | + | chr1_3:48131060-48131079 | Msa0121910:CDS | 35.0% | |
| TGTCAATGGTAGAGTAAAGT+TGG | + | chr1_3:48131074-48131093 | Msa0121910:CDS | 35.0% | |
| !! | GAAGTTTAATAGGCTCTGAA+GGG | - | chr1_3:48131118-48131137 | None:intergenic | 35.0% |
| ! | AGAAGTTTAATAGGCTCTGA+AGG | - | chr1_3:48131119-48131138 | None:intergenic | 35.0% |
| TATTCTAGCAGTGCTTACAT+CGG | + | chr1_3:48131293-48131312 | Msa0121910:intron | 35.0% | |
| AGAGAAAAAAACACACGATG+TGG | - | chr1_3:48131424-48131443 | None:intergenic | 35.0% | |
| ! | ATGTTTGACCATTTTGCAAG+TGG | + | chr1_3:48131553-48131572 | Msa0121910:intron | 35.0% |
| AATGTCTACCACTTGCAAAA+TGG | - | chr1_3:48131564-48131583 | None:intergenic | 35.0% | |
| GTGGTAGACATTATTTGCAT+TGG | + | chr1_3:48131572-48131591 | Msa0121910:intron | 35.0% | |
| GTGTGTCAATATTTGTATGC+AGG | - | chr1_3:48132377-48132396 | None:intergenic | 35.0% | |
| ATTGACAAAGAAATACGCAC+GGG | + | chr1_3:48132925-48132944 | Msa0121910:intron | 35.0% | |
| ! | AATCGTGCGTTTTTGTAACT+TGG | + | chr1_3:48132967-48132986 | Msa0121910:intron | 35.0% |
| ! | CGTTTTTGTAACTTGGAATC+TGG | + | chr1_3:48132974-48132993 | Msa0121910:intron | 35.0% |
| TTTGTAACTTGGAATCTGGA+AGG | + | chr1_3:48132978-48132997 | Msa0121910:intron | 35.0% | |
| TTCTAACTGCATAGAGTACA+CGG | - | chr1_3:48133046-48133065 | None:intergenic | 35.0% | |
| GTACTCTATGCAGTTAGAAA+TGG | + | chr1_3:48133047-48133066 | Msa0121910:intron | 35.0% | |
| ! | CTCTTGCAATTGCTAGTTTA+AGG | + | chr1_3:48133081-48133100 | Msa0121910:intron | 35.0% |
| !! | GATCATGTTTTTGCTCTGAA+AGG | - | chr1_3:48133160-48133179 | None:intergenic | 35.0% |
| !! | CTTGTAAACTTGCTACAAAG+TGG | + | chr1_3:48133187-48133206 | Msa0121910:intron | 35.0% |
| CTCATGATCATTGTAGACAA+TGG | - | chr1_3:48133380-48133399 | None:intergenic | 35.0% | |
| TAAGGGACCAAAAATGTCTT+CGG | - | chr1_3:48134154-48134173 | None:intergenic | 35.0% | |
| ! | AAGTTACCTTTTTGTCGAAG+TGG | + | chr1_3:48134173-48134192 | Msa0121910:intron | 35.0% |
| GAATATCCACTTCGACAAAA+AGG | - | chr1_3:48134182-48134201 | None:intergenic | 35.0% | |
| AACCATTCGAAAGGATTTAG+AGG | - | chr1_3:48134321-48134340 | None:intergenic | 35.0% | |
| AGTCAAGTTAAAAGAGGTAG+AGG | - | chr1_3:48134368-48134387 | None:intergenic | 35.0% | |
| AAGGAGAGTCAAGTTAAAAG+AGG | - | chr1_3:48134374-48134393 | None:intergenic | 35.0% | |
| ! | ATGTTCCTTTGTTTGATGAG+AGG | + | chr1_3:48134945-48134964 | Msa0121910:intron | 35.0% |
| ! | TGTTCCTTTGTTTGATGAGA+GGG | + | chr1_3:48134946-48134965 | Msa0121910:intron | 35.0% |
| TTCTCTTGATTAACCATAGC+TGG | - | chr1_3:48135067-48135086 | None:intergenic | 35.0% | |
| ATGTGGGATTATGAAAGGTT+TGG | - | chr1_3:48135643-48135662 | None:intergenic | 35.0% | |
| GGCTAATCTCTCCAATTAAT+CGG | + | chr1_3:48135721-48135740 | Msa0121910:intron | 35.0% | |
| TAATCTCTCCAATTAATCGG+TGG | + | chr1_3:48135724-48135743 | Msa0121910:intron | 35.0% | |
| !!! | CTATTTTGGGTTAACGTAAC+AGG | + | chr1_3:48135759-48135778 | Msa0121910:intron | 35.0% |
| TGAAAAGGGGGTTACATTTA+GGG | - | chr1_3:48135851-48135870 | None:intergenic | 35.0% | |
| TTGAAAAGGGGGTTACATTT+AGG | - | chr1_3:48135852-48135871 | None:intergenic | 35.0% | |
| AATGTGAAAAATGCAAAGGG+GGG | + | chr1_3:48136038-48136057 | Msa0121910:intron | 35.0% | |
| AAATCACTACCGTATACATG+AGG | + | chr1_3:48136246-48136265 | Msa0121910:intron | 35.0% | |
| ! | TTTGAGGTTCCTCATGTATA+CGG | - | chr1_3:48136258-48136277 | None:intergenic | 35.0% |
| !!! | TAGGTGGATTTTTTTTGGGA+GGG | - | chr1_3:48136284-48136303 | None:intergenic | 35.0% |
| !!! | TTAGGTGGATTTTTTTTGGG+AGG | - | chr1_3:48136285-48136304 | None:intergenic | 35.0% |
| !!! | GGTGTTAGGTGGATTTTTTT+TGG | - | chr1_3:48136289-48136308 | None:intergenic | 35.0% |
| CAGAAGAAAGAAAGGGAATA+AGG | + | chr1_3:48136732-48136751 | Msa0121910:intron | 35.0% | |
| GTCTAACATTTGTAACTCCA+TGG | + | chr1_3:48136962-48136981 | Msa0121910:intron | 35.0% | |
| ! | CCATCTTTGGAGAAATAAGA+GGG | - | chr1_3:48137206-48137225 | None:intergenic | 35.0% |
| ! | TCCATCTTTGGAGAAATAAG+AGG | - | chr1_3:48137207-48137226 | None:intergenic | 35.0% |
| ACTCAACGATAGAGTTTCAA+TGG | + | chr1_3:48137449-48137468 | Msa0121910:intron | 35.0% | |
| CTCAACGATAGAGTTTCAAT+GGG | + | chr1_3:48137450-48137469 | Msa0121910:intron | 35.0% | |
| TTAGCATCTATCAAGCAAGT+TGG | + | chr1_3:48137781-48137800 | Msa0121910:intron | 35.0% | |
| TGCTCAATAGATCATGTTAG+AGG | - | chr1_3:48138007-48138026 | None:intergenic | 35.0% | |
| GAAATGCAGTATCAATGACT+TGG | - | chr1_3:48130483-48130502 | None:intergenic | 35.0% | |
| CTTGAACACGTAACATTCAT+AGG | - | chr1_3:48138353-48138372 | None:intergenic | 35.0% | |
| GTTACGTGTTCAAGAAGAAA+AGG | + | chr1_3:48130524-48130543 | Msa0121910:CDS | 35.0% | |
| GTTCAAGAAGAAAAGGTTTG+CGG | + | chr1_3:48130531-48130550 | Msa0121910:CDS | 35.0% | |
| TTTAACAACACGATCCTTCT+TGG | - | chr1_3:48130578-48130597 | None:intergenic | 35.0% | |
| ! | AAACCATCGGAAGTATGAAT+CGG | - | chr1_3:48130604-48130623 | None:intergenic | 35.0% |
| TCCAGAGAAGATTATTGCTT+CGG | - | chr1_3:48138524-48138543 | None:intergenic | 35.0% | |
| AGTAAATCGGTATCTGAATC+CGG | - | chr1_3:48130739-48130758 | None:intergenic | 35.0% | |
| AGGAAATGAGTATGTTCGTA+TGG | + | chr1_3:48130870-48130889 | Msa0121910:intron | 35.0% | |
| TGCAGTTGTGAATTATGCTC+CGG | + | chr1_3:48130549-48130568 | Msa0121910:CDS | 40.0% | |
| !! | TCAGATACCGATTTACTCGA+TGG | + | chr1_3:48130742-48130761 | Msa0121910:CDS | 40.0% |
| ! | ACATGGTAGTGATTGGAACA+GGG | - | chr1_3:48130768-48130787 | None:intergenic | 40.0% |
| ! | AACATGGTAGTGATTGGAAC+AGG | - | chr1_3:48130769-48130788 | None:intergenic | 40.0% |
| ! | CAATGGAACATGGTAGTGAT+TGG | - | chr1_3:48130775-48130794 | None:intergenic | 40.0% |
| TACCATGTTCCATTGTCTCA+AGG | + | chr1_3:48130780-48130799 | Msa0121910:CDS | 40.0% | |
| ACCATGTTCCATTGTCTCAA+GGG | + | chr1_3:48130781-48130800 | Msa0121910:CDS | 40.0% | |
| AAAACGTTCCCTTGAGACAA+TGG | - | chr1_3:48130792-48130811 | None:intergenic | 40.0% | |
| GAATTGACGCTGCAATTAAG+TGG | + | chr1_3:48130821-48130840 | Msa0121910:CDS | 40.0% | |
| ACTCATTACTCCATTCGTTC+TGG | + | chr1_3:48130916-48130935 | Msa0121910:CDS | 40.0% | |
| GACAATACAATCACCTTCGT+TGG | - | chr1_3:48131058-48131077 | None:intergenic | 40.0% | |
| ! | TAGAGTAAAGTTGGTCCATG+AGG | + | chr1_3:48131083-48131102 | Msa0121910:intron | 40.0% |
| ! | TAAAGTTGGTCCATGAGGAA+TGG | + | chr1_3:48131088-48131107 | Msa0121910:intron | 40.0% |
| CCTACACACTCCATATTGTA+GGG | - | chr1_3:48131810-48131829 | None:intergenic | 40.0% | |
| ACCTACACACTCCATATTGT+AGG | - | chr1_3:48131811-48131830 | None:intergenic | 40.0% | |
| AATATGGAGTGTGTAGGTCT+TGG | + | chr1_3:48131813-48131832 | Msa0121910:intron | 40.0% | |
| TCTTGGTCCTCACTATGTTA+AGG | + | chr1_3:48131830-48131849 | Msa0121910:intron | 40.0% | |
| TGAATATGGAGTGCAAAGTG+TGG | - | chr1_3:48132661-48132680 | None:intergenic | 40.0% | |
| !! | GTGGAAGTTTGGTCTTACTT+TGG | + | chr1_3:48132761-48132780 | Msa0121910:intron | 40.0% |
| CCTATACTTCACCAAAATGC+CGG | - | chr1_3:48132898-48132917 | None:intergenic | 40.0% | |
| TGAGGTCTTAGGCTATAGAT+AGG | + | chr1_3:48133131-48133150 | Msa0121910:intron | 40.0% | |
| !!! | CATGTTTTTGCTCTGAAAGG+AGG | - | chr1_3:48133157-48133176 | None:intergenic | 40.0% |
| AGTGAGTAGACTTCTAGTCT+TGG | + | chr1_3:48133398-48133417 | Msa0121910:intron | 40.0% | |
| ! | GTGAGTAGACTTCTAGTCTT+GGG | + | chr1_3:48133399-48133418 | Msa0121910:intron | 40.0% |
| !! | ACTTCTAGTCTTGGGATTGT+TGG | + | chr1_3:48133407-48133426 | Msa0121910:intron | 40.0% |
| !! | AAGTTGGTCCCTTACGTTTT+TGG | + | chr1_3:48133862-48133881 | Msa0121910:intron | 40.0% |
| ! | CAAGCCTTATCCTACTAAGT+GGG | + | chr1_3:48134227-48134246 | Msa0121910:intron | 40.0% |
| ! | AAGCCTTATCCTACTAAGTG+GGG | + | chr1_3:48134228-48134247 | Msa0121910:intron | 40.0% |
| GGATTTAGAGGTCAATGAGT+TGG | - | chr1_3:48134309-48134328 | None:intergenic | 40.0% | |
| GACCTCTAAATCCTTTCGAA+TGG | + | chr1_3:48134316-48134335 | Msa0121910:intron | 40.0% | |
| TCTTCTTAAGACGGCATCTA+CGG | + | chr1_3:48134406-48134425 | Msa0121910:intron | 40.0% | |
| !! | CACACCATCTCTAGTCTTTT+GGG | + | chr1_3:48134498-48134517 | Msa0121910:intron | 40.0% |
| TACACCCAAAAGACTAGAGA+TGG | - | chr1_3:48134505-48134524 | None:intergenic | 40.0% | |
| !! | TCTAGTCTTTTGGGTGTACT+TGG | + | chr1_3:48134507-48134526 | Msa0121910:intron | 40.0% |
| TGTACTTGGAGCTTGAATAG+TGG | + | chr1_3:48134521-48134540 | Msa0121910:intron | 40.0% | |
| TGATTAACCATAGCTGGAGA+AGG | - | chr1_3:48135061-48135080 | None:intergenic | 40.0% | |
| GTATCCTTAATTAGTGCCCT+GGG | + | chr1_3:48135585-48135604 | Msa0121910:intron | 40.0% | |
| GTCACATGCAAACGTATACA+TGG | + | chr1_3:48135700-48135719 | Msa0121910:intron | 40.0% | |
| ! | TTTGGGTTAACGTAACAGGT+AGG | + | chr1_3:48135763-48135782 | Msa0121910:intron | 40.0% |
| TGAGTGGTTACATTAAGGGA+CGG | - | chr1_3:48135811-48135830 | None:intergenic | 40.0% | |
| TCGGTTCTGTAAGTGAAAAG+AGG | + | chr1_3:48136119-48136138 | Msa0121910:intron | 40.0% | |
| GTCGTATATATGCGATCCAA+AGG | + | chr1_3:48136220-48136239 | Msa0121910:intron | 40.0% | |
| ! | ACGGTAGTGATTTTCACCTT+TGG | - | chr1_3:48136239-48136258 | None:intergenic | 40.0% |
| !!! | ATCTTGCTTTTGGTGTTAGG+TGG | - | chr1_3:48136300-48136319 | None:intergenic | 40.0% |
| !!! | GTCATCTTGCTTTTGGTGTT+AGG | - | chr1_3:48136303-48136322 | None:intergenic | 40.0% |
| ! | GAATTGGGTCATCTTGCTTT+TGG | - | chr1_3:48136310-48136329 | None:intergenic | 40.0% |
| TTCCTGCATCAGATGTCAAA+CGG | + | chr1_3:48136339-48136358 | Msa0121910:intron | 40.0% | |
| CTCTTCTATTTCCTCTCTTC+AGG | - | chr1_3:48136558-48136577 | None:intergenic | 40.0% | |
| TGAATATGTGGTTGCCTGAT+CGG | + | chr1_3:48136637-48136656 | Msa0121910:intron | 40.0% | |
| CGAATCGGAGAAGAAGAAAA+CGG | + | chr1_3:48136664-48136683 | Msa0121910:intron | 40.0% | |
| AGAAGAAAACGGAAGTTCGA+TGG | + | chr1_3:48136675-48136694 | Msa0121910:intron | 40.0% | |
| !! | ATGTTCTAGAAGAACCACTC+GGG | - | chr1_3:48137124-48137143 | None:intergenic | 40.0% |
| !! | CATGTTCTAGAAGAACCACT+CGG | - | chr1_3:48137125-48137144 | None:intergenic | 40.0% |
| !! | GAGTGGTTCTTCTAGAACAT+GGG | + | chr1_3:48137124-48137143 | Msa0121910:intron | 40.0% |
| ! | CCCTCTTATTTCTCCAAAGA+TGG | + | chr1_3:48137203-48137222 | Msa0121910:intron | 40.0% |
| GACACTAAAACGTCCATCTT+TGG | - | chr1_3:48137219-48137238 | None:intergenic | 40.0% | |
| TACTAATGTGACACGTACGA+CGG | - | chr1_3:48137284-48137303 | None:intergenic | 40.0% | |
| ! | TTTGGGTTCACATAACCGTT+AGG | + | chr1_3:48138165-48138184 | Msa0121910:intron | 40.0% |
| TGTGGTACTGTCTTACCTAA+CGG | - | chr1_3:48138183-48138202 | None:intergenic | 40.0% | |
| ACCGAAGCAATAATCTTCTC+TGG | + | chr1_3:48138520-48138539 | Msa0121910:CDS | 40.0% | |
| TGCCAAAATAGATTTCGCTC+CGG | + | chr1_3:48138552-48138571 | Msa0121910:CDS | 40.0% | |
| ! | ATCCGGAGCGAAATCTATTT+TGG | - | chr1_3:48138557-48138576 | None:intergenic | 40.0% |
| !! | TCAGATACCGATTTACTCGA+TGG | + | chr1_3:48130742-48130761 | Msa0121910:CDS | 40.0% |
| ! | ACATGGTAGTGATTGGAACA+GGG | - | chr1_3:48130768-48130787 | None:intergenic | 40.0% |
| ! | AACATGGTAGTGATTGGAAC+AGG | - | chr1_3:48130769-48130788 | None:intergenic | 40.0% |
| ! | CAATGGAACATGGTAGTGAT+TGG | - | chr1_3:48130775-48130794 | None:intergenic | 40.0% |
| TACCATGTTCCATTGTCTCA+AGG | + | chr1_3:48130780-48130799 | Msa0121910:CDS | 40.0% | |
| ACCATGTTCCATTGTCTCAA+GGG | + | chr1_3:48130781-48130800 | Msa0121910:CDS | 40.0% | |
| AAAACGTTCCCTTGAGACAA+TGG | - | chr1_3:48130792-48130811 | None:intergenic | 40.0% | |
| GAATAGACGCTGCAATTAAG+TGG | + | chr1_3:48138656-48138675 | Msa0121910:CDS | 40.0% | |
| ACTCATTACTCCATTCGTTC+TGG | + | chr1_3:48130916-48130935 | Msa0121910:CDS | 40.0% | |
| GCAGTTGTGAATTATGCTCC+GGG | + | chr1_3:48130550-48130569 | Msa0121910:CDS | 45.0% | |
| ! | AAGCCGATTCATACTTCCGA+TGG | + | chr1_3:48130598-48130617 | Msa0121910:CDS | 45.0% |
| !! | GATTGTGCCTTTGAGACAGA+AGG | + | chr1_3:48130661-48130680 | Msa0121910:intron | 45.0% |
| ACCGAAGCAATCATCTTCTC+TGG | + | chr1_3:48130685-48130704 | Msa0121910:CDS | 45.0% | |
| GCCAGAGAAGATGATTGCTT+CGG | - | chr1_3:48130689-48130708 | None:intergenic | 45.0% | |
| AACAGGGCCATCGAGTAAAT+CGG | - | chr1_3:48130752-48130771 | None:intergenic | 45.0% | |
| TCCCTTGAGACAATGGAACA+TGG | - | chr1_3:48130785-48130804 | None:intergenic | 45.0% | |
| ! | CTCGGTACGGTCTTTGAAAA+TGG | + | chr1_3:48130952-48130971 | Msa0121910:CDS | 45.0% |
| !! | TTTAATAGGCTCTGAAGGGC+AGG | - | chr1_3:48131114-48131133 | None:intergenic | 45.0% |
| ATGCTCATCGCGAATACATG+TGG | + | chr1_3:48131328-48131347 | Msa0121910:intron | 45.0% | |
| AAATGGGGTGACATACAGAG+AGG | + | chr1_3:48131779-48131798 | Msa0121910:intron | 45.0% | |
| AATGGGGTGACATACAGAGA+GGG | + | chr1_3:48131780-48131799 | Msa0121910:intron | 45.0% | |
| CCCTACAATATGGAGTGTGT+AGG | + | chr1_3:48131807-48131826 | Msa0121910:intron | 45.0% | |
| AAATGCCGGTCGTGCTTATT+GGG | - | chr1_3:48132884-48132903 | None:intergenic | 45.0% | |
| AAAATGCCGGTCGTGCTTAT+TGG | - | chr1_3:48132885-48132904 | None:intergenic | 45.0% | |
| ! | AATAAGCACGACCGGCATTT+TGG | + | chr1_3:48132884-48132903 | Msa0121910:intron | 45.0% |
| !! | CCGGCATTTTGGTGAAGTAT+AGG | + | chr1_3:48132895-48132914 | Msa0121910:intron | 45.0% |
| AACTTGGAATCTGGAAGGTC+TGG | + | chr1_3:48132983-48133002 | Msa0121910:intron | 45.0% | |
| TTCTTGTTAGGACGTGATCC+AGG | - | chr1_3:48133020-48133039 | None:intergenic | 45.0% | |
| AGTACACGGTCGTTCTTGTT+AGG | - | chr1_3:48133032-48133051 | None:intergenic | 45.0% | |
| CCACTTAGTAGGATAAGGCT+TGG | - | chr1_3:48134229-48134248 | None:intergenic | 45.0% | |
| ! | CCAAGCCTTATCCTACTAAG+TGG | + | chr1_3:48134226-48134245 | Msa0121910:intron | 45.0% |
| CTTATCCTACTAAGTGGGGT+CGG | + | chr1_3:48134232-48134251 | Msa0121910:intron | 45.0% | |
| AAAGAGGTAGAGGAAGACCT+AGG | - | chr1_3:48134358-48134377 | None:intergenic | 45.0% | |
| CTTCTTAAGACGGCATCTAC+GGG | + | chr1_3:48134407-48134426 | Msa0121910:intron | 45.0% | |
| CCAAAAGACTAGAGATGGTG+TGG | - | chr1_3:48134500-48134519 | None:intergenic | 45.0% | |
| !! | CCACACCATCTCTAGTCTTT+TGG | + | chr1_3:48134497-48134516 | Msa0121910:intron | 45.0% |
| TTCGCCCTCTCATCAAACAA+AGG | - | chr1_3:48134953-48134972 | None:intergenic | 45.0% | |
| TGGACTTGTGCATTGCCATA+AGG | - | chr1_3:48134981-48135000 | None:intergenic | 45.0% | |
| TCCTTGGTCATTGAGCCAAT+TGG | + | chr1_3:48135381-48135400 | Msa0121910:intron | 45.0% | |
| ! | TCCAATTGGCTCAATGACCA+AGG | - | chr1_3:48135385-48135404 | None:intergenic | 45.0% |
| GGTATCCTTAATTAGTGCCC+TGG | + | chr1_3:48135584-48135603 | Msa0121910:intron | 45.0% | |
| TGGTTACATTAAGGGACGGA+GGG | - | chr1_3:48135807-48135826 | None:intergenic | 45.0% | |
| TGCAAAGGGGGGTTACATTA+AGG | + | chr1_3:48136049-48136068 | Msa0121910:intron | 45.0% | |
| GCAAAGGGGGGTTACATTAA+GGG | + | chr1_3:48136050-48136069 | Msa0121910:intron | 45.0% | |
| AGCCTCCAGATTCATAGGAA+CGG | - | chr1_3:48136100-48136119 | None:intergenic | 45.0% | |
| TTCCTATGAATCTGGAGGCT+CGG | + | chr1_3:48136100-48136119 | Msa0121910:intron | 45.0% | |
| !!! | TTTTTTGGGAGGGTGGTTTG+AGG | - | chr1_3:48136274-48136293 | None:intergenic | 45.0% |
| !!! | GTGGATTTTTTTTGGGAGGG+TGG | - | chr1_3:48136281-48136300 | None:intergenic | 45.0% |
| TTCCGTTTGACATCTGATGC+AGG | - | chr1_3:48136344-48136363 | None:intergenic | 45.0% | |
| GGAGGTTTATACCTGAAGAG+AGG | + | chr1_3:48136544-48136563 | Msa0121910:intron | 45.0% | |
| TGCCTGATCGGAAATCGAAT+CGG | + | chr1_3:48136649-48136668 | Msa0121910:intron | 45.0% | |
| AAAACGGAAGTTCGATGGAG+TGG | + | chr1_3:48136680-48136699 | Msa0121910:intron | 45.0% | |
| TGCAAACAGCTCAATGGAGT+TGG | - | chr1_3:48136863-48136882 | None:intergenic | 45.0% | |
| AGAGGATGCAAACAGCTCAA+TGG | - | chr1_3:48136869-48136888 | None:intergenic | 45.0% | |
| TGAGCTGTTTGCATCCTCTA+AGG | + | chr1_3:48136870-48136889 | Msa0121910:intron | 45.0% | |
| GTTTCAGATGCTTTCACCCA+TGG | - | chr1_3:48136982-48137001 | None:intergenic | 45.0% | |
| !! | GACGATTTGCTGAACGTATG+AGG | + | chr1_3:48137090-48137109 | Msa0121910:intron | 45.0% |
| TTGCTGAACGTATGAGGCAA+AGG | + | chr1_3:48137096-48137115 | Msa0121910:intron | 45.0% | |
| !! | CGAGTGGTTCTTCTAGAACA+TGG | + | chr1_3:48137123-48137142 | Msa0121910:intron | 45.0% |
| !! | TGGTTCTTCTAGAACATGGG+TGG | + | chr1_3:48137127-48137146 | Msa0121910:intron | 45.0% |
| ! | GCTATTAGATCACTCTGGAG+AGG | + | chr1_3:48137170-48137189 | Msa0121910:intron | 45.0% |
| TATACGTTTGCATGCGACCA+AGG | - | chr1_3:48138100-48138119 | None:intergenic | 45.0% | |
| ! | AAGCCGATTCATACTTCCGA+TGG | + | chr1_3:48130598-48130617 | Msa0121910:CDS | 45.0% |
| !! | GATTGTGCCTTTGAGACAGA+AGG | + | chr1_3:48130661-48130680 | Msa0121910:intron | 45.0% |
| AACAGGGCCATCGAGTAAAT+CGG | - | chr1_3:48130752-48130771 | None:intergenic | 45.0% | |
| TCCCTTGAGACAATGGAACA+TGG | - | chr1_3:48130785-48130804 | None:intergenic | 45.0% | |
| ! | CTCGGTACGGTCTTTGAAAA+TGG | + | chr1_3:48130952-48130971 | Msa0121910:CDS | 45.0% |
| !! | TAAAAAACAAAAATATAATT+TGG | - | chr1_3:48133959-48133978 | None:intergenic | 5.0% |
| !!! | AAGAATTTATTAATTTTTTT+CGG | + | chr1_3:48135133-48135152 | Msa0121910:intron | 5.0% |
| !!! | AATACATTTTTATTTTATTA+CGG | - | chr1_3:48136146-48136165 | None:intergenic | 5.0% |
| !!! | ATTTTTAAAAGATAAATAAA+AGG | + | chr1_3:48136196-48136215 | Msa0121910:intron | 5.0% |
| !!! | ATATTTTTTTATTTTCATTT+TGG | - | chr1_3:48137051-48137070 | None:intergenic | 5.0% |
| !! | AAAAAAAAAATTATTCAAAA+TGG | + | chr1_3:48137360-48137379 | Msa0121910:intron | 5.0% |
| !! | TTCGGTGCCTTCTGTCTCAA+AGG | - | chr1_3:48130671-48130690 | None:intergenic | 50.0% |
| GACGCTGCAATTAAGTGGAC+CGG | + | chr1_3:48130826-48130845 | Msa0121910:CDS | 50.0% | |
| AGAGGGACAGCCCTACAATA+TGG | + | chr1_3:48131797-48131816 | Msa0121910:intron | 50.0% | |
| TACACCCCAATAAGCACGAC+CGG | + | chr1_3:48132876-48132895 | Msa0121910:intron | 50.0% | |
| AATGCCGGTCGTGCTTATTG+GGG | - | chr1_3:48132883-48132902 | None:intergenic | 50.0% | |
| ACAAAGAAATACGCACGGGC+CGG | + | chr1_3:48132929-48132948 | Msa0121910:intron | 50.0% | |
| CGACCCCACTTAGTAGGATA+AGG | - | chr1_3:48134234-48134253 | None:intergenic | 50.0% | |
| AGCTTGAATAGTGGTGCGTC+AGG | + | chr1_3:48134530-48134549 | Msa0121910:intron | 50.0% | |
| AGAGGGCGAACTTCTCCTTA+TGG | + | chr1_3:48134963-48134982 | Msa0121910:intron | 50.0% | |
| GAGTACTCCTTCTCCAGCTA+TGG | + | chr1_3:48135051-48135070 | Msa0121910:intron | 50.0% | |
| ! | TGCTCCCAGGGCACTAATTA+AGG | - | chr1_3:48135592-48135611 | None:intergenic | 50.0% |
| GTGGTTACATTAAGGGACGG+AGG | - | chr1_3:48135808-48135827 | None:intergenic | 50.0% | |
| AGGGGGGTTACATTAAGGGA+CGG | + | chr1_3:48136054-48136073 | Msa0121910:intron | 50.0% | |
| GGGTTACATTAAGGGACGGA+GGG | + | chr1_3:48136058-48136077 | Msa0121910:intron | 50.0% | |
| CGGAGGGAGTAGTAACTTTC+AGG | + | chr1_3:48136074-48136093 | Msa0121910:intron | 50.0% | |
| TCAGGCCGTTCCTATGAATC+TGG | + | chr1_3:48136092-48136111 | Msa0121910:intron | 50.0% | |
| AACCGAGCCTCCAGATTCAT+AGG | - | chr1_3:48136105-48136124 | None:intergenic | 50.0% | |
| ! | CTCCGATTCGATTTCCGATC+AGG | - | chr1_3:48136654-48136673 | None:intergenic | 50.0% |
| ! | TGGTGGTGTGATGGAACTTG+TGG | + | chr1_3:48136700-48136719 | Msa0121910:intron | 50.0% |
| TTATCAGGGTCGGACCTTAG+AGG | - | chr1_3:48136887-48136906 | None:intergenic | 50.0% | |
| GAGAGCAATTCCCCGTTACT+CGG | - | chr1_3:48137254-48137273 | None:intergenic | 50.0% | |
| TAATGTGACACGTACGACGG+AGG | - | chr1_3:48137281-48137300 | None:intergenic | 50.0% | |
| GCGGTTGTGAATTATGCTCC+AGG | + | chr1_3:48138385-48138404 | Msa0121910:CDS | 50.0% | |
| TTATGCTCCAGGAGCCAAGA+AGG | + | chr1_3:48138396-48138415 | Msa0121910:CDS | 50.0% | |
| !! | TTCGGTGCCTTCTGTCTCAA+AGG | - | chr1_3:48130671-48130690 | None:intergenic | 50.0% |
| GACGCTGCAATTAAGTGGAC+CGG | + | chr1_3:48130826-48130845 | Msa0121910:CDS | 50.0% | |
| TTATGCTCCGGGAGCCAAGA+AGG | + | chr1_3:48130561-48130580 | Msa0121910:CDS | 55.0% | |
| ACACGATCCTTCTTGGCTCC+CGG | - | chr1_3:48130571-48130590 | None:intergenic | 55.0% | |
| CAAAGAAATACGCACGGGCC+GGG | + | chr1_3:48132930-48132949 | Msa0121910:intron | 55.0% | |
| GATTGTGCTTGTGATCCGCC+CGG | - | chr1_3:48132951-48132970 | None:intergenic | 55.0% | |
| ! | GGTCTGGAAAGTGTGTGACC+TGG | + | chr1_3:48132999-48133018 | Msa0121910:intron | 55.0% |
| TGTAGCCGACCCCACTTAGT+AGG | - | chr1_3:48134240-48134259 | None:intergenic | 55.0% | |
| ACTAAGTGGGGTCGGCTACA+TGG | + | chr1_3:48134240-48134259 | Msa0121910:intron | 55.0% | |
| ! | AATTAGTGCCCTGGGAGCAC+CGG | + | chr1_3:48135593-48135612 | Msa0121910:intron | 55.0% |
| CATGTTAACCGGTGCTCCCA+GGG | - | chr1_3:48135604-48135623 | None:intergenic | 55.0% | |
| TCATGTTAACCGGTGCTCCC+AGG | - | chr1_3:48135605-48135624 | None:intergenic | 55.0% | |
| GGGGTTACATTAAGGGACGG+AGG | + | chr1_3:48136057-48136076 | Msa0121910:intron | 55.0% | |
| GGCCGTTCCTATGAATCTGG+AGG | + | chr1_3:48136095-48136114 | Msa0121910:intron | 55.0% | |
| ACGGAAGTTCGATGGAGTGG+TGG | + | chr1_3:48136683-48136702 | Msa0121910:intron | 55.0% | |
| ! | TCGATGGAGTGGTGGTGTGA+TGG | + | chr1_3:48136691-48136710 | Msa0121910:intron | 55.0% |
| CTGCTCCTTGAGCCGAGTAA+CGG | + | chr1_3:48137239-48137258 | Msa0121910:intron | 55.0% | |
| TGCTCCTTGAGCCGAGTAAC+GGG | + | chr1_3:48137240-48137259 | Msa0121910:intron | 55.0% | |
| ATTCCCCGTTACTCGGCTCA+AGG | - | chr1_3:48137247-48137266 | None:intergenic | 55.0% | |
| ACACGATCCTTCTTGGCTCC+TGG | - | chr1_3:48130571-48130590 | None:intergenic | 55.0% | |
| GAAGGGCAGGCCATTCCTCA+TGG | - | chr1_3:48131101-48131120 | None:intergenic | 60.0% | |
| ATGAGGCAAAGGCTCCCGAG+TGG | + | chr1_3:48137107-48137126 | Msa0121910:intron | 60.0% | |
| CGTTACTCGGCTCAAGGAGC+AGG | - | chr1_3:48137241-48137260 | None:intergenic | 60.0% | |
| GCTCCTTGAGCCGAGTAACG+GGG | + | chr1_3:48137241-48137260 | Msa0121910:intron | 60.0% | |
| TGTGACACGTACGACGGAGG+AGG | - | chr1_3:48137278-48137297 | None:intergenic | 60.0% | |
| AGAAATACGCACGGGCCGGG+CGG | + | chr1_3:48132933-48132952 | Msa0121910:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 48130472 | 48138876 | 48130472 | ID=Msa0121910;Name=Msa0121910 |
| chr1_3 | mRNA | 48130472 | 48138876 | 48130472 | ID=Msa0121910-mRNA-1;Parent=Msa0121910;Name=Msa0121910-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0|0|1|0|0|5|0|351 |
| chr1_3 | exon | 48130472 | 48130657 | 48130472 | ID=Msa0121910-mRNA-1:exon:14538;Parent=Msa0121910-mRNA-1 |
| chr1_3 | exon | 48130676 | 48130882 | 48130676 | ID=Msa0121910-mRNA-1:exon:14539;Parent=Msa0121910-mRNA-1 |
| chr1_3 | exon | 48130907 | 48131095 | 48130907 | ID=Msa0121910-mRNA-1:exon:14540;Parent=Msa0121910-mRNA-1 |
| chr1_3 | exon | 48138373 | 48138603 | 48138373 | ID=Msa0121910-mRNA-1:exon:14541;Parent=Msa0121910-mRNA-1 |
| chr1_3 | exon | 48138637 | 48138876 | 48138637 | ID=Msa0121910-mRNA-1:exon:14542;Parent=Msa0121910-mRNA-1 |
| chr1_3 | CDS | 48130472 | 48130657 | 48130472 | ID=Msa0121910-mRNA-1:cds;Parent=Msa0121910-mRNA-1 |
| chr1_3 | CDS | 48130676 | 48130882 | 48130676 | ID=Msa0121910-mRNA-1:cds;Parent=Msa0121910-mRNA-1 |
| chr1_3 | CDS | 48130907 | 48131095 | 48130907 | ID=Msa0121910-mRNA-1:cds;Parent=Msa0121910-mRNA-1 |
| chr1_3 | CDS | 48138373 | 48138603 | 48138373 | ID=Msa0121910-mRNA-1:cds;Parent=Msa0121910-mRNA-1 |
| chr1_3 | CDS | 48138637 | 48138876 | 48138637 | ID=Msa0121910-mRNA-1:cds;Parent=Msa0121910-mRNA-1 |
| Gene Sequence |
| Protein sequence |
