AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0176600


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0176600 MtrunA17_Chr1g0199091 97.765 537 8 1 1 537 1 533 0.0 1088
Msa0176600 MtrunA17_Chr2g0280631 48.649 148 66 5 394 536 272 414 5.22e-31 124
Msa0176600 MtrunA17_Chr6g0486111 44.586 157 58 4 403 533 167 320 7.53e-31 122
Msa0176600 MtrunA17_Chr8g0361501 45.625 160 80 4 377 535 290 443 5.49e-30 122
Msa0176600 MtrunA17_Chr2g0318971 50.769 130 61 2 404 533 308 434 8.34e-30 121
Msa0176600 MtrunA17_Chr2g0331431 44.805 154 51 5 409 531 175 325 4.47e-28 114
Msa0176600 MtrunA17_Chr8g0390301 42.236 161 56 4 403 533 180 333 1.09e-27 114
Msa0176600 MtrunA17_Chr3g0141841 47.101 138 68 3 384 517 299 435 3.51e-27 114
Msa0176600 MtrunA17_Chr1g0207771 44.853 136 61 3 409 533 141 273 5.58e-27 110
Msa0176600 MtrunA17_Chr4g0045561 50.000 102 41 3 428 529 59 150 1.18e-21 92.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0176600 AT1G31050.6 51.208 207 90 5 335 537 239 438 4.34e-52 184
Msa0176600 AT1G31050.1 51.208 207 86 6 335 537 239 434 1.26e-50 179
Msa0176600 AT1G31050.7 51.232 203 84 6 335 533 239 430 1.65e-48 174
Msa0176600 AT1G31050.8 43.961 207 79 7 335 537 239 412 2.51e-35 137
Msa0176600 AT3G19500.1 49.612 129 57 5 409 533 135 259 5.87e-27 110
Msa0176600 AT1G27660.1 49.565 115 53 2 402 513 311 423 8.84e-27 113
Msa0176600 AT1G61660.7 42.775 173 84 5 377 537 224 393 2.18e-26 111
Msa0176600 AT1G61660.1 42.775 173 84 5 377 537 224 393 2.18e-26 111
Msa0176600 AT3G20640.1 37.912 182 88 5 355 535 296 453 2.26e-26 112
Msa0176600 AT3G20640.4 37.912 182 88 5 355 535 234 391 2.63e-26 111
Msa0176600 AT4G29100.1 43.312 157 52 7 409 531 248 401 1.33e-25 109
Msa0176600 AT2G20100.1 42.308 156 54 5 409 531 205 357 1.95e-25 108
Msa0176600 AT1G61660.3 41.765 170 87 4 377 537 224 390 5.01e-25 107
Msa0176600 AT2G31730.2 50.485 103 41 3 428 530 42 134 1.51e-24 100
Msa0176600 AT2G31730.1 50.485 103 41 3 428 530 42 134 1.51e-24 100
Msa0176600 AT1G05710.6 43.651 126 56 3 405 530 14 124 4.04e-24 98.6
Msa0176600 AT1G05710.11 43.651 126 56 3 405 530 22 132 4.22e-24 99.0
Msa0176600 AT1G05710.5 43.651 126 56 3 405 530 22 132 4.22e-24 99.0
Msa0176600 AT1G05710.1 43.651 126 56 3 405 530 22 132 4.22e-24 99.0
Msa0176600 AT1G05710.14 43.651 126 56 3 405 530 22 132 4.22e-24 99.0
Msa0176600 AT1G05710.3 43.651 126 56 3 405 530 22 132 4.22e-24 99.0
Msa0176600 AT1G05710.4 43.651 126 56 3 405 530 22 132 4.22e-24 99.0
Msa0176600 AT1G05710.12 43.651 126 56 3 405 530 22 132 4.22e-24 99.0
Msa0176600 AT1G31050.5 47.445 137 65 3 335 470 239 369 7.26e-24 103
Msa0176600 AT1G31050.2 47.445 137 61 4 335 470 239 365 1.71e-22 99.8
Msa0176600 AT4G05170.3 46.970 132 50 4 398 511 23 152 1.79e-21 92.4
Msa0176600 AT4G05170.2 36.797 231 113 9 309 511 45 270 2.11e-21 95.1
Msa0176600 AT4G05170.1 36.957 230 112 9 309 510 63 287 2.18e-21 95.5
Msa0176600 AT4G05170.5 45.588 136 54 4 393 510 111 244 6.16e-21 93.2
Msa0176600 AT4G05170.7 40.437 183 87 7 309 474 45 222 1.66e-20 91.3
Msa0176600 AT1G05710.9 37.838 148 55 4 405 530 14 146 5.73e-20 87.4
Msa0176600 AT1G05710.8 37.838 148 55 4 405 530 14 146 5.73e-20 87.4
Msa0176600 AT1G05710.13 37.838 148 55 4 405 530 22 154 6.28e-20 87.8
Msa0176600 AT1G05710.2 37.838 148 55 4 405 530 22 154 6.28e-20 87.8
Msa0176600 AT1G05710.10 37.838 148 55 4 405 530 22 154 6.28e-20 87.8
Msa0176600 AT1G05710.7 37.838 148 55 4 405 530 22 154 6.28e-20 87.8
Msa0176600 AT4G21340.1 43.609 133 57 5 397 514 157 286 1.11e-19 90.1
Msa0176600 AT1G49830.2 48.454 97 46 2 435 531 133 225 9.74e-19 86.3
Msa0176600 AT1G49830.1 48.454 97 46 2 435 531 134 226 1.02e-18 86.3
Msa0176600 AT4G05170.6 39.011 182 89 7 309 473 45 221 2.74e-18 84.3
Msa0176600 AT4G05170.4 39.011 182 89 7 309 473 45 221 2.74e-18 84.3
Msa0176600 AT1G61660.6 47.748 111 46 3 377 477 224 332 7.88e-18 85.5
Msa0176600 AT1G61660.2 47.748 111 46 3 377 477 224 332 7.88e-18 85.5
Msa0176600 AT3G20640.3 39.683 126 54 3 355 480 296 399 5.71e-17 83.6
Msa0176600 AT3G19500.2 52.113 71 31 1 409 476 135 205 9.25e-17 80.1
Msa0176600 AT4G29100.2 46.939 98 44 3 385 476 219 314 3.03e-16 80.9
Msa0176600 AT2G20100.4 57.353 68 27 1 409 476 205 270 7.69e-16 79.0
Msa0176600 AT2G20100.2 57.353 68 27 1 409 476 205 270 7.69e-16 79.0
Msa0176600 AT1G61660.4 36.527 167 81 6 377 537 224 371 9.41e-16 79.3
Msa0176600 AT2G20100.3 57.353 68 27 1 409 476 205 270 2.44e-15 78.6
Msa0176600 AT1G31050.3 43.478 115 58 3 335 448 239 347 2.55e-14 75.1
Msa0176600 AT1G31050.4 43.478 115 54 4 335 448 239 343 6.58e-13 70.9
Msa0176600 AT3G20640.2 37.931 116 50 3 355 470 296 389 9.64e-13 70.5

Find 128 sgRNAs with CRISPR-Local

Find 235 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAATTCTCTTTCTTCAAAT+TGG 0.120203 1_4:+63070017 Msa0176600:CDS
TCACAAGAAGAGGAAGAATT+TGG 0.217219 1_4:-63070079 None:intergenic
TGAAGATACCACCAGTTTAA+TGG 0.227878 1_4:-63069992 None:intergenic
CCTTCCAAGCCTACTATTAA+AGG 0.229635 1_4:-63071595 None:intergenic
GGTAGTTTGAAATGACAATT+AGG 0.230715 1_4:-63071294 None:intergenic
TTGTTAGTGATTCCTTTAAT+TGG 0.238465 1_4:-63069887 None:intergenic
TTGTCTCCTAGCTTGACTTT+AGG 0.249029 1_4:-63072410 None:intergenic
TTGCACAATAACCAAGAAAT+TGG 0.269212 1_4:+63070916 Msa0176600:CDS
TGTTCTCTCTATAAACTATA+GGG 0.281744 1_4:-63073896 None:intergenic
TCCCTCTCCTCTTCCATTAG+TGG 0.281990 1_4:-63072140 None:intergenic
TGTCATTTCAAACTACCTTT+TGG 0.288080 1_4:+63071300 Msa0176600:CDS
AAGTTTGAGTATCTCATATT+AGG 0.290538 1_4:-63071645 None:intergenic
TTGTTCTCTCTATAAACTAT+AGG 0.291074 1_4:-63073897 None:intergenic
AGATCCATTCCACCAATTAA+AGG 0.292296 1_4:+63069875 Msa0176600:five_prime_UTR
AAGAATTTGGATTATTCATT+TGG 0.300698 1_4:-63070066 None:intergenic
AGAAATTGGAGAAAATTTCT+TGG 0.301871 1_4:+63070930 Msa0176600:CDS
CAACAAATTGTGTCTCCATT+TGG 0.320532 1_4:+63072446 Msa0176600:CDS
TAATTCTAATTCCTCCAATA+TGG 0.332844 1_4:+63071242 Msa0176600:CDS
ATGTTATATCCTTTAATAGT+AGG 0.338011 1_4:+63071586 Msa0176600:CDS
AATCCAAATGGATTTCTTGA+TGG 0.341712 1_4:+63071471 Msa0176600:CDS
ACTATAATTTGCTAGAATCT+TGG 0.352861 1_4:+63074026 Msa0176600:three_prime_UTR
ACCTTCCTCCAACGACTTCA+TGG 0.368605 1_4:+63070207 Msa0176600:CDS
AGAACAATGGACCAGATTAC+TGG 0.373771 1_4:+63073913 Msa0176600:CDS
TGTGAATTTGCCTTCAAGTA+AGG 0.376170 1_4:-63073648 None:intergenic
TCAAAGTGGCTACTAACTTC+AGG 0.382319 1_4:-63071183 None:intergenic
TTGGTGCATGGTGAAATATT+TGG 0.392516 1_4:-63071552 None:intergenic
TTAATTGGTGGAATGGATCT+AGG 0.393658 1_4:-63069872 None:intergenic
AACCCATCAAGAAATCCATT+TGG 0.394816 1_4:-63071474 None:intergenic
TATAGAGGTGTTGGATCAAA+TGG 0.395514 1_4:+63070889 Msa0176600:intron
GTTGTTGAAGTATCTTGCTT+AGG 0.402645 1_4:-63072223 None:intergenic
ATGCTTCGGATAACCAACTA+TGG 0.408893 1_4:+63070236 Msa0176600:CDS
AAAATAATTTATAGAGGTGT+TGG 0.410268 1_4:+63070880 Msa0176600:intron
AGAAAATCACTTAATCCAAA+TGG 0.413099 1_4:+63071459 Msa0176600:CDS
TGATATTCAAGACATGAATA+AGG 0.417390 1_4:+63071383 Msa0176600:CDS
AGACCAAGTGCTTACAAGAT+TGG 0.417683 1_4:-63071145 None:intergenic
GTAGTTTGAAATGACAATTA+GGG 0.422857 1_4:-63071293 None:intergenic
TACGCTGGTGTCCAGTAATC+TGG 0.425230 1_4:-63073924 None:intergenic
CGTATAGAGGATGTATGTAT+AGG 0.435878 1_4:+63073943 Msa0176600:CDS
CCTCTACTACTCCATTAAAC+TGG 0.438226 1_4:+63069981 Msa0176600:CDS
CTTCATGGCCGAACATGCTT+CGG 0.438443 1_4:+63070222 Msa0176600:CDS
TTGGTTATCCGAAGCATGTT+CGG 0.438578 1_4:-63070230 None:intergenic
ATTCAACAGTGAGGCTTGAA+TGG 0.438689 1_4:-63070150 None:intergenic
TATCTCATATTAGGCCTTTG+TGG 0.439058 1_4:-63071636 None:intergenic
ACTGAGCAACCCTTACTTGA+AGG 0.440093 1_4:+63073638 Msa0176600:CDS
ATCCAAATGGATTTCTTGAT+GGG 0.447532 1_4:+63071472 Msa0176600:CDS
ATTGGAGAAAATTTCTTGGA+TGG 0.450537 1_4:+63070934 Msa0176600:CDS
TGTGGATGGATTCCAACAAC+TGG 0.457135 1_4:-63071618 None:intergenic
TTAGTGATTCCTTTAATTGG+TGG 0.459239 1_4:-63069884 None:intergenic
TGTGATCTCCCACTGAGTTA+AGG 0.459782 1_4:-63071506 None:intergenic
GATTCCTTTAATTGGTGGAA+TGG 0.462105 1_4:-63069879 None:intergenic
CTATCGAAGTAGCTTCCCCT+TGG 0.464932 1_4:-63073804 None:intergenic
TATTCATGTCTTGAATATCA+TGG 0.469820 1_4:-63071380 None:intergenic
ATGCAGATGAGAACCACTAA+TGG 0.471394 1_4:+63072127 Msa0176600:intron
ATATCCTTTAATAGTAGGCT+TGG 0.476406 1_4:+63071591 Msa0176600:CDS
TACTAACTTCAGGGTCAGGT+GGG 0.477199 1_4:-63071173 None:intergenic
AGGCTTGGAAGGCCAGTTGT+TGG 0.479456 1_4:+63071606 Msa0176600:CDS
AACAGTGAGGCTTGAATGGT+TGG 0.481356 1_4:-63070146 None:intergenic
GAAACTTGATACAACAAGTT+GGG 0.483370 1_4:+63071017 Msa0176600:CDS
TCTTGAATATCATGGCAACT+AGG 0.484654 1_4:-63071372 None:intergenic
TCATATTAGGCCTTTGTGGA+TGG 0.484833 1_4:-63071632 None:intergenic
ATGGAGACACAATTTGTTGA+AGG 0.484969 1_4:-63072442 None:intergenic
TCTGTGCTGTTTGAAGCAAT+AGG 0.485312 1_4:+63072629 Msa0176600:CDS
AACAACAAATTCATCTTCAA+AGG 0.487475 1_4:+63072240 Msa0176600:CDS
AAGCTAGACCTTCGAAGTAA+AGG 0.488325 1_4:+63073846 Msa0176600:CDS
CTACTAACTTCAGGGTCAGG+TGG 0.488776 1_4:-63071174 None:intergenic
CTGTGCTGTTTGAAGCAATA+GGG 0.493656 1_4:+63072630 Msa0176600:CDS
AATAATTAATCCAGGATCCA+AGG 0.503184 1_4:+63073787 Msa0176600:intron
CAAAGTGGCTACTAACTTCA+GGG 0.505301 1_4:-63071182 None:intergenic
TTCTTCAAATAGTCACAAGC+TGG 0.508018 1_4:-63070997 None:intergenic
TGGCTACTAACTTCAGGGTC+AGG 0.508130 1_4:-63071177 None:intergenic
TCTGTAGTAACCTTTCCAAA+TGG 0.515894 1_4:-63072461 None:intergenic
ATAAAACATGACTCCATAGT+TGG 0.516595 1_4:-63070249 None:intergenic
CCTTTAATAGTAGGCTTGGA+AGG 0.519150 1_4:+63071595 Msa0176600:CDS
AGAAACTTGATACAACAAGT+TGG 0.527132 1_4:+63071016 Msa0176600:CDS
TACTGGACACCAGCGTATAG+AGG 0.530645 1_4:+63073930 Msa0176600:CDS
AACAAAGACCTTTACTTCGA+AGG 0.532863 1_4:-63073854 None:intergenic
AATTGTGTCTCCATTTGGAA+AGG 0.534925 1_4:+63072451 Msa0176600:CDS
ATCAAACATAGTGTTTGTCA+TGG 0.536223 1_4:-63070971 None:intergenic
AAATTCTTCCTCTTCTTGTG+AGG 0.543566 1_4:+63070081 Msa0176600:CDS
GTGAATTTGCCTTCAAGTAA+GGG 0.548202 1_4:-63073647 None:intergenic
ATCTTGATCCTCACAAGAAG+AGG 0.549474 1_4:-63070089 None:intergenic
GTATTGATGATGATCCATAT+TGG 0.550681 1_4:-63071256 None:intergenic
TATCCAATCTTGTAAGCACT+TGG 0.551774 1_4:+63071142 Msa0176600:CDS
GGAACGATGTTAAACATGCA+TGG 0.552356 1_4:+63070038 Msa0176600:CDS
ATAATTAATCCAGGATCCAA+GGG 0.556652 1_4:+63073788 Msa0176600:intron
ATGAGAACCACTAATGGAAG+AGG 0.557286 1_4:+63072133 Msa0176600:CDS
CCAGTTTAATGGAGTAGTAG+AGG 0.559707 1_4:-63069981 None:intergenic
AACTATAGGGGTACATGACG+TGG 0.562984 1_4:-63073883 None:intergenic
AATAATAGCCTTAACTCAGT+GGG 0.563019 1_4:+63071498 Msa0176600:CDS
CTTGAATATCATGGCAACTA+GGG 0.564915 1_4:-63071371 None:intergenic
TGGAGACACAATTTGTTGAA+GGG 0.569835 1_4:-63072441 None:intergenic
CAAGCACCTAAAGTCAAGCT+AGG 0.570211 1_4:+63072404 Msa0176600:CDS
CATGATGTGGAATCTCCAAA+AGG 0.578793 1_4:-63071315 None:intergenic
TTCGGCCATGAAGTCGTTGG+AGG 0.581056 1_4:-63070212 None:intergenic
GTTCTCTCTATAAACTATAG+GGG 0.582129 1_4:-63073895 None:intergenic
GTATCTTGAAGAACAAGTCC+AGG 0.584917 1_4:+63072661 Msa0176600:CDS
TTGGAGGAAGGTGGTGCATG+CGG 0.587623 1_4:-63070196 None:intergenic
ACCACTAATGGAAGAGGAGA+GGG 0.589390 1_4:+63072139 Msa0176600:CDS
GCCATGAAGTCGTTGGAGGA+AGG 0.597276 1_4:-63070208 None:intergenic
CTTGAAGGCAAATTCACACA+AGG 0.597962 1_4:+63073653 Msa0176600:CDS
TTATCTGAGTCAAAGAAACA+AGG 0.598600 1_4:+63071666 Msa0176600:CDS
TTCTCTAATAGTGCATGATG+TGG 0.607686 1_4:-63071328 None:intergenic
ACATCATGCACTATTAGAGA+AGG 0.611496 1_4:+63071330 Msa0176600:CDS
ACTAACTTCAGGGTCAGGTG+GGG 0.612027 1_4:-63071172 None:intergenic
CTACTTCGATAGAAAAGACA+AGG 0.620057 1_4:+63073815 Msa0176600:CDS
ATGAAGTCGTTGGAGGAAGG+TGG 0.620238 1_4:-63070205 None:intergenic
AACCACTAATGGAAGAGGAG+AGG 0.625336 1_4:+63072138 Msa0176600:CDS
TACATACATCCTCTATACGC+TGG 0.625600 1_4:-63073939 None:intergenic
CTACTACTCCATTAAACTGG+TGG 0.628507 1_4:+63069984 Msa0176600:CDS
CTCTTATTGAGAATAATGAA+AGG 0.630132 1_4:+63071109 Msa0176600:CDS
TGTTTGTTTGTGAATCAAAG+TGG 0.631378 1_4:-63071197 None:intergenic
TAATAATAGCCTTAACTCAG+TGG 0.633565 1_4:+63071497 Msa0176600:CDS
ATGTTCGGCCATGAAGTCGT+TGG 0.634214 1_4:-63070215 None:intergenic
CTCGACGAACACTCTTCGAG+AGG 0.644553 1_4:-63070173 None:intergenic
TATCTGAGTCAAAGAAACAA+GGG 0.644946 1_4:+63071667 Msa0176600:CDS
ACTATAGGGGTACATGACGT+GGG 0.651164 1_4:-63073882 None:intergenic
CATGCAAGTGAAGTGATGCA+AGG 0.656888 1_4:+63071426 Msa0176600:CDS
TTGATGATGATCCATATTGG+AGG 0.673081 1_4:-63071253 None:intergenic
TGCACTATTAGAGAAGGAGT+AGG 0.675198 1_4:+63071336 Msa0176600:CDS
ATAGTTTATAGAGAGAACAA+TGG 0.682655 1_4:+63073900 Msa0176600:CDS
AGTTGGGAATATAATACTAG+CGG 0.683788 1_4:+63071033 Msa0176600:CDS
AACTCAGTGGGAGATCACAA+TGG 0.686157 1_4:+63071510 Msa0176600:CDS
ATAAAGATGAGTGAAGAATG+TGG 0.710534 1_4:+63069941 Msa0176600:exon
TTGTTGGAATCCATCCACAA+AGG 0.714376 1_4:+63071622 Msa0176600:CDS
TTCGAGAGGATTCAACAGTG+AGG 0.716670 1_4:-63070159 None:intergenic
TAATTAATCCAGGATCCAAG+GGG 0.729650 1_4:+63073789 Msa0176600:intron
CTTCGATAGAAAAGACAAGG+AGG 0.751104 1_4:+63073818 Msa0176600:CDS
AAGATGAGTGAAGAATGTGG+TGG 0.756172 1_4:+63069944 Msa0176600:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTATATTATTGAAATTAAC+TGG + chr1_4:63070418-63070437 Msa0176600:intron 10.0%
!! TTATGTAAAATAATTTATAG+AGG + chr1_4:63070874-63070893 Msa0176600:intron 10.0%
!!! TATTTTTTCTTTTTCTTTTA+TGG + chr1_4:63071714-63071733 Msa0176600:intron 10.0%
!! TAATACACAAAAAAATAAAA+AGG - chr1_4:63072345-63072364 None:intergenic 10.0%
!! ATTATTTATACAAAAAAGAT+AGG - chr1_4:63072522-63072541 None:intergenic 10.0%
!!! TTAGTTTATTCATTTTTATA+AGG - chr1_4:63072788-63072807 None:intergenic 10.0%
!! CAAAATTATGAATATTTATA+GGG - chr1_4:63072943-63072962 None:intergenic 10.0%
!! ACAAAATTATGAATATTTAT+AGG - chr1_4:63072944-63072963 None:intergenic 10.0%
!!! ATGGAAAATATAAATTTTAT+AGG + chr1_4:63073296-63073315 Msa0176600:intron 10.0%
!!! TGGAAAATATAAATTTTATA+GGG + chr1_4:63073297-63073316 Msa0176600:intron 10.0%
!!! TATAAGTTAAAAAGTATATA+TGG - chr1_4:63073338-63073357 None:intergenic 10.0%
!!! TTTGCCATTTAAAAAAAATA+TGG - chr1_4:63071827-63071846 None:intergenic 15.0%
!!! TTGTCTAATATATATTTTAC+CGG - chr1_4:63071890-63071909 None:intergenic 15.0%
!!! TTCATTTAACTATTTTAGTA+TGG + chr1_4:63072019-63072038 Msa0176600:intron 15.0%
!! TAAATTGATTATTATGAAGT+AGG - chr1_4:63072571-63072590 None:intergenic 15.0%
!! TTCATCAACTATATAATATA+AGG + chr1_4:63072859-63072878 Msa0176600:intron 15.0%
!! AGATTAAAAACAAAACAAAA+TGG + chr1_4:63073277-63073296 Msa0176600:intron 15.0%
!! ATAATAATTAAGAACGTAAA+AGG - chr1_4:63073612-63073631 None:intergenic 15.0%
!! AAGAATTTGGATTATTCATT+TGG - chr1_4:63070069-63070088 None:intergenic 20.0%
!! AACATCAAATATATAGCATA+TGG - chr1_4:63070390-63070409 None:intergenic 20.0%
!!! TGTTTTAAGTTAGGTATATA+GGG + chr1_4:63070505-63070524 Msa0176600:intron 20.0%
!! TGAGTAAATAATATTCTTCT+AGG + chr1_4:63070556-63070575 Msa0176600:intron 20.0%
!!! AAAATAATTTATAGAGGTGT+TGG + chr1_4:63070880-63070899 Msa0176600:intron 20.0%
!!! TATAACATCAGAGAAATTTT+TGG - chr1_4:63071574-63071593 None:intergenic 20.0%
!! ATGTTATATCCTTTAATAGT+AGG + chr1_4:63071586-63071605 Msa0176600:CDS 20.0%
!! AAAGAAAAAATAACTCACAT+GGG - chr1_4:63071706-63071725 None:intergenic 20.0%
!! AAAAGAAAAAATAACTCACA+TGG - chr1_4:63071707-63071726 None:intergenic 20.0%
!! TCAAAATATAGGTATAAAGA+TGG - chr1_4:63071799-63071818 None:intergenic 20.0%
!!! AGGTCCATATTTTTTTTAAA+TGG + chr1_4:63071820-63071839 Msa0176600:intron 20.0%
!!! CGCTAATTCATATATTTTTT+TGG - chr1_4:63071915-63071934 None:intergenic 20.0%
!! TGTAAAAAAGTCATATAAAG+TGG + chr1_4:63072314-63072333 Msa0176600:intron 20.0%
!! GTAAAAAAGTCATATAAAGT+GGG + chr1_4:63072315-63072334 Msa0176600:intron 20.0%
!! TAAAAAAGTCATATAAAGTG+GGG + chr1_4:63072316-63072335 Msa0176600:intron 20.0%
!!! ACTTCTATTGATTGTTTAAA+AGG + chr1_4:63072379-63072398 Msa0176600:intron 20.0%
!! AAAAAAGATAGGAATGAAAA+AGG - chr1_4:63072511-63072530 None:intergenic 20.0%
!! ACATATAATGCATAATGAAT+GGG - chr1_4:63072709-63072728 None:intergenic 20.0%
!! TACATATAATGCATAATGAA+TGG - chr1_4:63072710-63072729 None:intergenic 20.0%
!! TATAAGGAACTAATAATCAT+AGG - chr1_4:63072772-63072791 None:intergenic 20.0%
!!! ATTAACCCTAGATTTTAATT+AGG - chr1_4:63072908-63072927 None:intergenic 20.0%
!!! AAATGCACTTTTATTTTGTA+GGG - chr1_4:63072974-63072993 None:intergenic 20.0%
!!! AAAATGCACTTTTATTTTGT+AGG - chr1_4:63072975-63072994 None:intergenic 20.0%
!!! ATCTTTCATTAGCTTTTTTT+TGG - chr1_4:63073063-63073082 None:intergenic 20.0%
!! AACGAAATTGTCATTATTTA+TGG + chr1_4:63073142-63073161 Msa0176600:intron 20.0%
!! ACGAAATTGTCATTATTTAT+GGG + chr1_4:63073143-63073162 Msa0176600:intron 20.0%
!! TGACATATAATAATTAATCC+AGG + chr1_4:63073779-63073798 Msa0176600:intron 20.0%
! TTGTTAGTGATTCCTTTAAT+TGG - chr1_4:63069890-63069909 None:intergenic 25.0%
! CAAATTCTCTTTCTTCAAAT+TGG + chr1_4:63070017-63070036 Msa0176600:CDS 25.0%
!!! GACAAATCTTTTAGAGTTTT+AGG + chr1_4:63070457-63070476 Msa0176600:intron 25.0%
!!! TAGAAGTTTTGTGAAGTTTA+AGG + chr1_4:63070481-63070500 Msa0176600:intron 25.0%
!!! AGAAGTTTTGTGAAGTTTAA+GGG + chr1_4:63070482-63070501 Msa0176600:intron 25.0%
!!! GTGTTTTAAGTTAGGTATAT+AGG + chr1_4:63070504-63070523 Msa0176600:intron 25.0%
!!! TTATAGATAGTGGAAAACAA+AGG - chr1_4:63070582-63070601 None:intergenic 25.0%
!! AGAAATTTTCTCCAATTTCT+TGG - chr1_4:63070930-63070949 None:intergenic 25.0%
! AGAAATTGGAGAAAATTTCT+TGG + chr1_4:63070930-63070949 Msa0176600:CDS 25.0%
!!! AATTTTGAGAAGCACTTAAA+TGG + chr1_4:63071075-63071094 Msa0176600:CDS 25.0%
!!! ATTTTGAGAAGCACTTAAAT+GGG + chr1_4:63071076-63071095 Msa0176600:CDS 25.0%
! CTCTTATTGAGAATAATGAA+AGG + chr1_4:63071109-63071128 Msa0176600:CDS 25.0%
! TAATTCTAATTCCTCCAATA+TGG + chr1_4:63071242-63071261 Msa0176600:CDS 25.0%
!! GTAGTTTGAAATGACAATTA+GGG - chr1_4:63071296-63071315 None:intergenic 25.0%
! TATTCATGTCTTGAATATCA+TGG - chr1_4:63071383-63071402 None:intergenic 25.0%
! TGATATTCAAGACATGAATA+AGG + chr1_4:63071383-63071402 Msa0176600:CDS 25.0%
! AGAAAATCACTTAATCCAAA+TGG + chr1_4:63071459-63071478 Msa0176600:CDS 25.0%
!! ACAATGGCAAATTTTATGAA+GGG + chr1_4:63071526-63071545 Msa0176600:CDS 25.0%
! AAGTTTGAGTATCTCATATT+AGG - chr1_4:63071648-63071667 None:intergenic 25.0%
!!! CTTTATACCTATATTTTGAG+AGG + chr1_4:63071800-63071819 Msa0176600:intron 25.0%
! TTGTCTCTATAAATTAGACA+TGG + chr1_4:63071964-63071983 Msa0176600:intron 25.0%
! AACAACAAATTCATCTTCAA+AGG + chr1_4:63072240-63072259 Msa0176600:CDS 25.0%
! AGATGACCTAATTAAAATCT+AGG + chr1_4:63072899-63072918 Msa0176600:intron 25.0%
! GATGACCTAATTAAAATCTA+GGG + chr1_4:63072900-63072919 Msa0176600:intron 25.0%
!!! TGCTGATGAAATTTTTTACA+AGG - chr1_4:63073003-63073022 None:intergenic 25.0%
! CGAAATTGTCATTATTTATG+GGG + chr1_4:63073144-63073163 Msa0176600:intron 25.0%
! GAAATTGTCATTATTTATGG+GGG + chr1_4:63073145-63073164 Msa0176600:intron 25.0%
!!! TGCAATTTTGTAATTTGTAG+CGG - chr1_4:63073247-63073266 None:intergenic 25.0%
! CATCTATAATACCAATAGTT+TGG - chr1_4:63073496-63073515 None:intergenic 25.0%
! TGTTCTCTCTATAAACTATA+GGG - chr1_4:63073899-63073918 None:intergenic 25.0%
! TTGTTCTCTCTATAAACTAT+AGG - chr1_4:63073900-63073919 None:intergenic 25.0%
! ATAGTTTATAGAGAGAACAA+TGG + chr1_4:63073900-63073919 Msa0176600:CDS 25.0%
!! ATACAACCACATACTATTTT+TGG - chr1_4:63073998-63074017 None:intergenic 25.0%
!!! ACTATAATTTGCTAGAATCT+TGG + chr1_4:63074026-63074045 Msa0176600:three_prime_UTR 25.0%
TTAGTGATTCCTTTAATTGG+TGG - chr1_4:63069887-63069906 None:intergenic 30.0%
ATAAAGATGAGTGAAGAATG+TGG + chr1_4:63069941-63069960 Msa0176600:exon 30.0%
ATAAAACATGACTCCATAGT+TGG - chr1_4:63070252-63070271 None:intergenic 30.0%
!!! GTTTAAGGGTGTTTTAAGTT+AGG + chr1_4:63070496-63070515 Msa0176600:intron 30.0%
AAGTTAGGTATATAGGGTTA+AGG + chr1_4:63070511-63070530 Msa0176600:intron 30.0%
TGTTAGCATGTTATAGATAG+TGG - chr1_4:63070592-63070611 None:intergenic 30.0%
ATATCTTACAGAATCCAAGA+GGG - chr1_4:63070714-63070733 None:intergenic 30.0%
TATATCTTACAGAATCCAAG+AGG - chr1_4:63070715-63070734 None:intergenic 30.0%
TTGCACAATAACCAAGAAAT+TGG + chr1_4:63070916-63070935 Msa0176600:CDS 30.0%
ATTGGAGAAAATTTCTTGGA+TGG + chr1_4:63070934-63070953 Msa0176600:CDS 30.0%
ATCAAACATAGTGTTTGTCA+TGG - chr1_4:63070974-63070993 None:intergenic 30.0%
AGAAACTTGATACAACAAGT+TGG + chr1_4:63071016-63071035 Msa0176600:CDS 30.0%
GAAACTTGATACAACAAGTT+GGG + chr1_4:63071017-63071036 Msa0176600:CDS 30.0%
AGTTGGGAATATAATACTAG+CGG + chr1_4:63071033-63071052 Msa0176600:CDS 30.0%
TGTTTGTTTGTGAATCAAAG+TGG - chr1_4:63071200-63071219 None:intergenic 30.0%
!! GTATTGATGATGATCCATAT+TGG - chr1_4:63071259-63071278 None:intergenic 30.0%
! GGTAGTTTGAAATGACAATT+AGG - chr1_4:63071297-63071316 None:intergenic 30.0%
!! TGTCATTTCAAACTACCTTT+TGG + chr1_4:63071300-63071319 Msa0176600:CDS 30.0%
! AATCCAAATGGATTTCTTGA+TGG + chr1_4:63071471-63071490 Msa0176600:CDS 30.0%
! ATCCAAATGGATTTCTTGAT+GGG + chr1_4:63071472-63071491 Msa0176600:CDS 30.0%
! TAATAATAGCCTTAACTCAG+TGG + chr1_4:63071497-63071516 Msa0176600:CDS 30.0%
! AATAATAGCCTTAACTCAGT+GGG + chr1_4:63071498-63071517 Msa0176600:CDS 30.0%
! CACAATGGCAAATTTTATGA+AGG + chr1_4:63071525-63071544 Msa0176600:CDS 30.0%
ATATCCTTTAATAGTAGGCT+TGG + chr1_4:63071591-63071610 Msa0176600:CDS 30.0%
TTATCTGAGTCAAAGAAACA+AGG + chr1_4:63071666-63071685 Msa0176600:CDS 30.0%
TATCTGAGTCAAAGAAACAA+GGG + chr1_4:63071667-63071686 Msa0176600:CDS 30.0%
AAAAAATAACTCACATGGGA+TGG - chr1_4:63071702-63071721 None:intergenic 30.0%
ATATGGACCTCTCAAAATAT+AGG - chr1_4:63071810-63071829 None:intergenic 30.0%
ATAGGAATGAAAAAGGTAAG+AGG - chr1_4:63072504-63072523 None:intergenic 30.0%
! AAAAAGTTTCTGAGTGCTTT+TGG + chr1_4:63073036-63073055 Msa0176600:intron 30.0%
AGCTAATGAAAGATGTTACA+AGG + chr1_4:63073069-63073088 Msa0176600:intron 30.0%
!! GATTATAAAGGCCATTTTCT+AGG - chr1_4:63073408-63073427 None:intergenic 30.0%
!! GGCCTTTATAATCCATTTTT+CGG + chr1_4:63073415-63073434 Msa0176600:intron 30.0%
!! GACCGAAAAATGGATTATAA+AGG - chr1_4:63073420-63073439 None:intergenic 30.0%
CTAAGTTTCTTCCAAACTAT+TGG + chr1_4:63073482-63073501 Msa0176600:intron 30.0%
AATAATTAATCCAGGATCCA+AGG + chr1_4:63073787-63073806 Msa0176600:intron 30.0%
ATAATTAATCCAGGATCCAA+GGG + chr1_4:63073788-63073807 Msa0176600:intron 30.0%
GTTCTCTCTATAAACTATAG+GGG - chr1_4:63073898-63073917 None:intergenic 30.0%
CTTATGCCAAAAATAGTATG+TGG + chr1_4:63073989-63074008 Msa0176600:three_prime_UTR 30.0%
TTAATTGGTGGAATGGATCT+AGG - chr1_4:63069875-63069894 None:intergenic 35.0%
AGATCCATTCCACCAATTAA+AGG + chr1_4:63069875-63069894 Msa0176600:five_prime_UTR 35.0%
GATTCCTTTAATTGGTGGAA+TGG - chr1_4:63069882-63069901 None:intergenic 35.0%
TGAAGATACCACCAGTTTAA+TGG - chr1_4:63069995-63070014 None:intergenic 35.0%
TCACAAGAAGAGGAAGAATT+TGG - chr1_4:63070082-63070101 None:intergenic 35.0%
AAATTCTTCCTCTTCTTGTG+AGG + chr1_4:63070081-63070100 Msa0176600:CDS 35.0%
!! TCCTTTGTTCTGAAATTCTG+AGG - chr1_4:63070358-63070377 None:intergenic 35.0%
! GGTTTTTATTGGTATGTGGA+TGG - chr1_4:63070693-63070712 None:intergenic 35.0%
! AGAGGGTTTTTATTGGTATG+TGG - chr1_4:63070697-63070716 None:intergenic 35.0%
CATACCAATAAAAACCCTCT+TGG + chr1_4:63070697-63070716 Msa0176600:intron 35.0%
! GAATCCAAGAGGGTTTTTAT+TGG - chr1_4:63070704-63070723 None:intergenic 35.0%
!! TATAGAGGTGTTGGATCAAA+TGG + chr1_4:63070889-63070908 Msa0176600:intron 35.0%
TTCTTCAAATAGTCACAAGC+TGG - chr1_4:63071000-63071019 None:intergenic 35.0%
TATCCAATCTTGTAAGCACT+TGG + chr1_4:63071142-63071161 Msa0176600:CDS 35.0%
!! TTGATGATGATCCATATTGG+AGG - chr1_4:63071256-63071275 None:intergenic 35.0%
TTCTCTAATAGTGCATGATG+TGG - chr1_4:63071331-63071350 None:intergenic 35.0%
ACATCATGCACTATTAGAGA+AGG + chr1_4:63071330-63071349 Msa0176600:CDS 35.0%
CTTGAATATCATGGCAACTA+GGG - chr1_4:63071374-63071393 None:intergenic 35.0%
TCTTGAATATCATGGCAACT+AGG - chr1_4:63071375-63071394 None:intergenic 35.0%
AACCCATCAAGAAATCCATT+TGG - chr1_4:63071477-63071496 None:intergenic 35.0%
TTGGTGCATGGTGAAATATT+TGG - chr1_4:63071555-63071574 None:intergenic 35.0%
!!! TCAGAGAAATTTTTGGTGCA+TGG - chr1_4:63071567-63071586 None:intergenic 35.0%
TATCTCATATTAGGCCTTTG+TGG - chr1_4:63071639-63071658 None:intergenic 35.0%
AATAGTAAAGTCTCTACACC+AGG + chr1_4:63071854-63071873 Msa0176600:intron 35.0%
! GTTGTTGAAGTATCTTGCTT+AGG - chr1_4:63072226-63072245 None:intergenic 35.0%
!! TGGAGACACAATTTGTTGAA+GGG - chr1_4:63072444-63072463 None:intergenic 35.0%
!! ATGGAGACACAATTTGTTGA+AGG - chr1_4:63072445-63072464 None:intergenic 35.0%
CAACAAATTGTGTCTCCATT+TGG + chr1_4:63072446-63072465 Msa0176600:CDS 35.0%
AATTGTGTCTCCATTTGGAA+AGG + chr1_4:63072451-63072470 Msa0176600:CDS 35.0%
TCTGTAGTAACCTTTCCAAA+TGG - chr1_4:63072464-63072483 None:intergenic 35.0%
! ATGAAAAAGGTAAGAGGTGT+GGG - chr1_4:63072498-63072517 None:intergenic 35.0%
AATGAAAAAGGTAAGAGGTG+TGG - chr1_4:63072499-63072518 None:intergenic 35.0%
TGAAGCTCATGAGATATTCA+TGG - chr1_4:63072843-63072862 None:intergenic 35.0%
TAAGATTAACATACAGGCAG+GGG - chr1_4:63073223-63073242 None:intergenic 35.0%
CTAAGATTAACATACAGGCA+GGG - chr1_4:63073224-63073243 None:intergenic 35.0%
!! TAAAGGCCATTTTCTAGGAA+TGG - chr1_4:63073403-63073422 None:intergenic 35.0%
GTGAATTTGCCTTCAAGTAA+GGG - chr1_4:63073650-63073669 None:intergenic 35.0%
TGTGAATTTGCCTTCAAGTA+AGG - chr1_4:63073651-63073670 None:intergenic 35.0%
TAATTAATCCAGGATCCAAG+GGG + chr1_4:63073789-63073808 Msa0176600:intron 35.0%
CTACTTCGATAGAAAAGACA+AGG + chr1_4:63073815-63073834 Msa0176600:CDS 35.0%
AACAAAGACCTTTACTTCGA+AGG - chr1_4:63073857-63073876 None:intergenic 35.0%
CGTATAGAGGATGTATGTAT+AGG + chr1_4:63073943-63073962 Msa0176600:CDS 35.0%
AAGATGAGTGAAGAATGTGG+TGG + chr1_4:63069944-63069963 Msa0176600:exon 40.0%
CCAGTTTAATGGAGTAGTAG+AGG - chr1_4:63069984-63070003 None:intergenic 40.0%
CCTCTACTACTCCATTAAAC+TGG + chr1_4:63069981-63070000 Msa0176600:CDS 40.0%
CTACTACTCCATTAAACTGG+TGG + chr1_4:63069984-63070003 Msa0176600:CDS 40.0%
GGAACGATGTTAAACATGCA+TGG + chr1_4:63070038-63070057 Msa0176600:CDS 40.0%
ATCTTGATCCTCACAAGAAG+AGG - chr1_4:63070092-63070111 None:intergenic 40.0%
ATTCAACAGTGAGGCTTGAA+TGG - chr1_4:63070153-63070172 None:intergenic 40.0%
TTGGTTATCCGAAGCATGTT+CGG - chr1_4:63070233-63070252 None:intergenic 40.0%
ATGCTTCGGATAACCAACTA+TGG + chr1_4:63070236-63070255 Msa0176600:CDS 40.0%
GCCTCAGAATTTCAGAACAA+AGG + chr1_4:63070354-63070373 Msa0176600:intron 40.0%
GGTATGTGGATGGATATACA+AGG - chr1_4:63070683-63070702 None:intergenic 40.0%
AGACCAAGTGCTTACAAGAT+TGG - chr1_4:63071148-63071167 None:intergenic 40.0%
CAAAGTGGCTACTAACTTCA+GGG - chr1_4:63071185-63071204 None:intergenic 40.0%
TCAAAGTGGCTACTAACTTC+AGG - chr1_4:63071186-63071205 None:intergenic 40.0%
CATGATGTGGAATCTCCAAA+AGG - chr1_4:63071318-63071337 None:intergenic 40.0%
TGCACTATTAGAGAAGGAGT+AGG + chr1_4:63071336-63071355 Msa0176600:CDS 40.0%
CCTTCCAAGCCTACTATTAA+AGG - chr1_4:63071598-63071617 None:intergenic 40.0%
CCTTTAATAGTAGGCTTGGA+AGG + chr1_4:63071595-63071614 Msa0176600:CDS 40.0%
TTGTTGGAATCCATCCACAA+AGG + chr1_4:63071622-63071641 Msa0176600:CDS 40.0%
TCATATTAGGCCTTTGTGGA+TGG - chr1_4:63071635-63071654 None:intergenic 40.0%
ATGCAGATGAGAACCACTAA+TGG + chr1_4:63072127-63072146 Msa0176600:intron 40.0%
ATGAGAACCACTAATGGAAG+AGG + chr1_4:63072133-63072152 Msa0176600:CDS 40.0%
TTGTCTCCTAGCTTGACTTT+AGG - chr1_4:63072413-63072432 None:intergenic 40.0%
! TGAAAAAGGTAAGAGGTGTG+GGG - chr1_4:63072497-63072516 None:intergenic 40.0%
!! TCTGTGCTGTTTGAAGCAAT+AGG + chr1_4:63072629-63072648 Msa0176600:CDS 40.0%
!! CTGTGCTGTTTGAAGCAATA+GGG + chr1_4:63072630-63072649 Msa0176600:CDS 40.0%
GTATCTTGAAGAACAAGTCC+AGG + chr1_4:63072661-63072680 Msa0176600:CDS 40.0%
TTTCCATAATGATACGCACC+TGG - chr1_4:63072682-63072701 None:intergenic 40.0%
AAGATTAACATACAGGCAGG+GGG - chr1_4:63073222-63073241 None:intergenic 40.0%
GCTAAGATTAACATACAGGC+AGG - chr1_4:63073225-63073244 None:intergenic 40.0%
AGCGGCTAAGATTAACATAC+AGG - chr1_4:63073229-63073248 None:intergenic 40.0%
ACCCTTCCATTCCTAGAAAA+TGG + chr1_4:63073394-63073413 Msa0176600:intron 40.0%
!! GCCATTTTCTAGGAATGGAA+GGG - chr1_4:63073398-63073417 None:intergenic 40.0%
CTTACTTCTCGACCGAAAAA+TGG - chr1_4:63073430-63073449 None:intergenic 40.0%
CTTGAAGGCAAATTCACACA+AGG + chr1_4:63073653-63073672 Msa0176600:CDS 40.0%
CTTCGATAGAAAAGACAAGG+AGG + chr1_4:63073818-63073837 Msa0176600:CDS 40.0%
AAGCTAGACCTTCGAAGTAA+AGG + chr1_4:63073846-63073865 Msa0176600:CDS 40.0%
AGAACAATGGACCAGATTAC+TGG + chr1_4:63073913-63073932 Msa0176600:CDS 40.0%
TACATACATCCTCTATACGC+TGG - chr1_4:63073942-63073961 None:intergenic 40.0%
AACAGTGAGGCTTGAATGGT+TGG - chr1_4:63070149-63070168 None:intergenic 45.0%
TTCGAGAGGATTCAACAGTG+AGG - chr1_4:63070162-63070181 None:intergenic 45.0%
TACTAACTTCAGGGTCAGGT+GGG - chr1_4:63071176-63071195 None:intergenic 45.0%
CATGCAAGTGAAGTGATGCA+AGG + chr1_4:63071426-63071445 Msa0176600:CDS 45.0%
TGTGATCTCCCACTGAGTTA+AGG - chr1_4:63071509-63071528 None:intergenic 45.0%
AACTCAGTGGGAGATCACAA+TGG + chr1_4:63071510-63071529 Msa0176600:CDS 45.0%
! TGTGGATGGATTCCAACAAC+TGG - chr1_4:63071621-63071640 None:intergenic 45.0%
AACCACTAATGGAAGAGGAG+AGG + chr1_4:63072138-63072157 Msa0176600:CDS 45.0%
ACCACTAATGGAAGAGGAGA+GGG + chr1_4:63072139-63072158 Msa0176600:CDS 45.0%
CAAGCACCTAAAGTCAAGCT+AGG + chr1_4:63072404-63072423 Msa0176600:CDS 45.0%
AGTCCAGGTGCGTATCATTA+TGG + chr1_4:63072676-63072695 Msa0176600:intron 45.0%
!! GGCCATTTTCTAGGAATGGA+AGG - chr1_4:63073399-63073418 None:intergenic 45.0%
ACTGAGCAACCCTTACTTGA+AGG + chr1_4:63073638-63073657 Msa0176600:CDS 45.0%
! ACTATAGGGGTACATGACGT+GGG - chr1_4:63073885-63073904 None:intergenic 45.0%
! AACTATAGGGGTACATGACG+TGG - chr1_4:63073886-63073905 None:intergenic 45.0%
!!! TTATTCATAATTAAATTTTA+GGG - chr1_4:63073187-63073206 None:intergenic 5.0%
!!! ATTATTCATAATTAAATTTT+AGG - chr1_4:63073188-63073207 None:intergenic 5.0%
ATGAAGTCGTTGGAGGAAGG+TGG - chr1_4:63070208-63070227 None:intergenic 50.0%
ACCTTCCTCCAACGACTTCA+TGG + chr1_4:63070207-63070226 Msa0176600:CDS 50.0%
ATGTTCGGCCATGAAGTCGT+TGG - chr1_4:63070218-63070237 None:intergenic 50.0%
CTTCATGGCCGAACATGCTT+CGG + chr1_4:63070222-63070241 Msa0176600:CDS 50.0%
ACTAACTTCAGGGTCAGGTG+GGG - chr1_4:63071175-63071194 None:intergenic 50.0%
CTACTAACTTCAGGGTCAGG+TGG - chr1_4:63071177-63071196 None:intergenic 50.0%
TGGCTACTAACTTCAGGGTC+AGG - chr1_4:63071180-63071199 None:intergenic 50.0%
TACACCAGGCGAATAGAGAC+CGG + chr1_4:63071868-63071887 Msa0176600:intron 50.0%
TTTACCGGTCTCTATTCGCC+TGG - chr1_4:63071875-63071894 None:intergenic 50.0%
TCCCTCTCCTCTTCCATTAG+TGG - chr1_4:63072143-63072162 None:intergenic 50.0%
CTATCGAAGTAGCTTCCCCT+TGG - chr1_4:63073807-63073826 None:intergenic 50.0%
TACGCTGGTGTCCAGTAATC+TGG - chr1_4:63073927-63073946 None:intergenic 50.0%
TACTGGACACCAGCGTATAG+AGG + chr1_4:63073930-63073949 Msa0176600:CDS 50.0%
CTCGACGAACACTCTTCGAG+AGG - chr1_4:63070176-63070195 None:intergenic 55.0%
TTGGAGGAAGGTGGTGCATG+CGG - chr1_4:63070199-63070218 None:intergenic 55.0%
GCCATGAAGTCGTTGGAGGA+AGG - chr1_4:63070211-63070230 None:intergenic 55.0%
TTCGGCCATGAAGTCGTTGG+AGG - chr1_4:63070215-63070234 None:intergenic 55.0%
AGGCTTGGAAGGCCAGTTGT+TGG + chr1_4:63071606-63071625 Msa0176600:CDS 55.0%
AGTAGCTTCCCCTTGGATCC+TGG - chr1_4:63073800-63073819 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 63069872 63074084 63069872 ID=Msa0176600;Name=Msa0176600
chr1_4 mRNA 63069872 63074084 63069872 ID=Msa0176600-mRNA-1;Parent=Msa0176600;Name=Msa0176600-mRNA-1;_AED=0.07;_eAED=0.07;_QI=75|1|1|1|1|1|7|116|537
chr1_4 exon 63069872 63070272 63069872 ID=Msa0176600-mRNA-1:exon:20319;Parent=Msa0176600-mRNA-1
chr1_4 exon 63070894 63071707 63070894 ID=Msa0176600-mRNA-1:exon:20320;Parent=Msa0176600-mRNA-1
chr1_4 exon 63072133 63072261 63072133 ID=Msa0176600-mRNA-1:exon:20321;Parent=Msa0176600-mRNA-1
chr1_4 exon 63072401 63072472 63072401 ID=Msa0176600-mRNA-1:exon:20322;Parent=Msa0176600-mRNA-1
chr1_4 exon 63072617 63072682 63072617 ID=Msa0176600-mRNA-1:exon:20323;Parent=Msa0176600-mRNA-1
chr1_4 exon 63073636 63073674 63073636 ID=Msa0176600-mRNA-1:exon:20324;Parent=Msa0176600-mRNA-1
chr1_4 exon 63073801 63074084 63073801 ID=Msa0176600-mRNA-1:exon:20325;Parent=Msa0176600-mRNA-1
chr1_4 five_prime_UTR 63069872 63069946 63069872 ID=Msa0176600-mRNA-1:five_prime_utr;Parent=Msa0176600-mRNA-1
chr1_4 CDS 63069947 63070272 63069947 ID=Msa0176600-mRNA-1:cds;Parent=Msa0176600-mRNA-1
chr1_4 CDS 63070894 63071707 63070894 ID=Msa0176600-mRNA-1:cds;Parent=Msa0176600-mRNA-1
chr1_4 CDS 63072133 63072261 63072133 ID=Msa0176600-mRNA-1:cds;Parent=Msa0176600-mRNA-1
chr1_4 CDS 63072401 63072472 63072401 ID=Msa0176600-mRNA-1:cds;Parent=Msa0176600-mRNA-1
chr1_4 CDS 63072617 63072682 63072617 ID=Msa0176600-mRNA-1:cds;Parent=Msa0176600-mRNA-1
chr1_4 CDS 63073636 63073674 63073636 ID=Msa0176600-mRNA-1:cds;Parent=Msa0176600-mRNA-1
chr1_4 CDS 63073801 63073968 63073801 ID=Msa0176600-mRNA-1:cds;Parent=Msa0176600-mRNA-1
chr1_4 three_prime_UTR 63073969 63074084 63073969 ID=Msa0176600-mRNA-1:three_prime_utr;Parent=Msa0176600-mRNA-1
Gene Sequence

>Msa0176600

ATGAGTGAAGAATGTGGTGGAAACACTATTGCTACCTCTACTACTCCATTAAACTGGTGGTATCTTCAAGCAAATTCTCTTTCTTCAAATTGGAACGATGTTAAACATGCATGGAACAACCAAATGAATAATCCAAATTCTTCCTCTTCTTGTGAGGATCAAGATATATCTGTTTCTTCTACATCTTTCACTAATGCATCCAACCATTCAAGCCTCACTGTTGAATCCTCTCGAAGAGTGTTCGTCGAGCCGCATGCACCACCTTCCTCCAACGACTTCATGGCCGAACATGCTTCGGATAACCAACTATGGAGTCATGTTTTATCAGGTGTTGGATCAAATGGAGAGTTGCACAATAACCAAGAAATTGGAGAAAATTTCTTGGATGGACTTTCATCAAAAACCATGACAAACACTATGTTTGATCAACCAGCTTGTGACTATTTGAAGAAACTTGATACAACAAGTTGGGAATATAATACTAGCGGTTCAACTTCATTCAATACTAATTTTGAGAAGCACTTAAATGGGTACAGTGAAGCTCTTATTGAGAATAATGAAAGGTTGACAAAGTTATCCAATCTTGTAAGCACTTGGTCTATTGCCCCACCTGACCCTGAAGTTAGTAGCCACTTTGATTCACAAACAAACAACAATTTGTCTACTAATTTGAATAATTCTAATTCCTCCAATATGGATCATCATCAATACACACATGATTCTGACCCTAATTGTCATTTCAAACTACCTTTTGGAGATTCCACATCATGCACTATTAGAGAAGGAGTAGGTAATAAAATGTTCCCTAGTTGCCATGATATTCAAGACATGAATAAGGTTAAACAAGAATATCATCATCATGCAAGTGAAGTGATGCAAGGAAATGTGTTTAGAAAATCACTTAATCCAAATGGATTTCTTGATGGGTTTAATAATAGCCTTAACTCAGTGGGAGATCACAATGGCAAATTTTATGAAGGGTTGCCAAATATTTCACCATGCACCAAAAATTTCTCTGATGTTATATCCTTTAATAGTAGGCTTGGAAGGCCAGTTGTTGGAATCCATCCACAAAGGCCTAATATGAGATACTCAAACTTATCTGAGTCAAAGAAACAAGGGCTTCAGACACCATCCCATATGAGAACCACTAATGGAAGAGGAGAGGGAACAACACGTGAAGTAAAGAAGAAAAGATCTGAAGAATCATCAGAAGCAAGTTTGAAGAAACCTAAGCAAGATACTTCAACAACAAATTCATCTTCAAAGGTGCAAGCACCTAAAGTCAAGCTAGGAGACAAGATCACAGCCCTTCAACAAATTGTGTCTCCATTTGGAAAGACTGATACAGCATCTGTGCTGTTTGAAGCAATAGGGTACATAAAGTATCTTGAAGAACAAGTCCAGTTACTGAGCAACCCTTACTTGAAGGCAAATTCACACAAGGATCCAAGGGGAAGCTACTTCGATAGAAAAGACAAGGAGGATGCAAAGCTAGACCTTCGAAGTAAAGGTCTTTGTTTAGTTCCCACGTCATGTACCCCTATAGTTTATAGAGAGAACAATGGACCAGATTACTGGACACCAGCGTATAGAGGATGTATGTATAGGTGA

Protein sequence

>Msa0176600

MSEECGGNTIATSTTPLNWWYLQANSLSSNWNDVKHAWNNQMNNPNSSSSCEDQDISVSSTSFTNASNHSSLTVESSRRVFVEPHAPPSSNDFMAEHASDNQLWSHVLSGVGSNGELHNNQEIGENFLDGLSSKTMTNTMFDQPACDYLKKLDTTSWEYNTSGSTSFNTNFEKHLNGYSEALIENNERLTKLSNLVSTWSIAPPDPEVSSHFDSQTNNNLSTNLNNSNSSNMDHHQYTHDSDPNCHFKLPFGDSTSCTIREGVGNKMFPSCHDIQDMNKVKQEYHHHASEVMQGNVFRKSLNPNGFLDGFNNSLNSVGDHNGKFYEGLPNISPCTKNFSDVISFNSRLGRPVVGIHPQRPNMRYSNLSESKKQGLQTPSHMRTTNGRGEGTTREVKKKRSEESSEASLKKPKQDTSTTNSSSKVQAPKVKLGDKITALQQIVSPFGKTDTASVLFEAIGYIKYLEEQVQLLSNPYLKANSHKDPRGSYFDRKDKEDAKLDLRSKGLCLVPTSCTPIVYRENNGPDYWTPAYRGCMYR*