Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0172300 | XP_013466087.1 | 99.517 | 207 | 1 | 0 | 1 | 207 | 1 | 207 | 1.11e-147 | 419 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0172300 | sp|P41129|RL132_BRANA | 84.951 | 206 | 31 | 0 | 2 | 207 | 1 | 206 | 1.08e-129 | 366 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0172300 | B7FGS0 | 99.517 | 207 | 1 | 0 | 1 | 207 | 1 | 207 | 5.33e-148 | 419 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003030 | Msa0172300 | 0.812432 | 4.253193e-51 | -8.615850e-47 |
| Msa0146910 | Msa0172300 | 0.809430 | 1.899370e-50 | -8.615850e-47 |
| Msa0172300 | Msa0182100 | 0.817539 | 3.129761e-52 | -8.615850e-47 |
| Msa0172300 | Msa0188740 | 0.812251 | 4.656324e-51 | -8.615850e-47 |
| Msa0172300 | Msa0270160 | 0.816961 | 4.222372e-52 | -8.615850e-47 |
| Msa0172300 | Msa0373350 | 0.830082 | 3.588455e-55 | -8.615850e-47 |
| Msa0172300 | Msa0421920 | 0.824563 | 7.544151e-54 | -8.615850e-47 |
| Msa0172300 | Msa0521730 | 0.807709 | 4.428300e-50 | -8.615850e-47 |
| Msa0172300 | Msa0524340 | 0.814047 | 1.879112e-51 | -8.615850e-47 |
| Msa0172300 | Msa0578010 | 0.830624 | 2.643870e-55 | -8.615850e-47 |
| Msa0172300 | Msa0621190 | 0.805711 | 1.169860e-49 | -8.615850e-47 |
| Msa0172300 | Msa0656450 | 0.808974 | 2.378624e-50 | -8.615850e-47 |
| Msa0172300 | Msa0930360 | 0.806095 | 9.713626e-50 | -8.615850e-47 |
| Msa0172300 | Msa1082050 | 0.817582 | 3.060976e-52 | -8.615850e-47 |
| Msa0172300 | Msa1165210 | 0.801273 | 9.733324e-49 | -8.615850e-47 |
| Msa0172300 | Msa1227350 | 0.829535 | 4.875557e-55 | -8.615850e-47 |
| Msa0172300 | Msa1284800 | 0.804910 | 1.721645e-49 | -8.615850e-47 |
| Msa0172300 | Msa1387750 | 0.832090 | 1.152332e-55 | -8.615850e-47 |
| Msa0172300 | Msa1403520 | 0.831506 | 1.606066e-55 | -8.615850e-47 |
| Msa0172300 | Msa1407550 | 0.801955 | 7.051256e-49 | -8.615850e-47 |
| Msa0172300 | Msa1413570 | 0.809311 | 2.015018e-50 | -8.615850e-47 |
| Msa0172300 | Msa1446510 | 0.833242 | 5.969305e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0172300 | MtrunA17_Chr1g0155011 | 99.517 | 207 | 1 | 0 | 1 | 207 | 1 | 207 | 1.03e-151 | 419 |
| Msa0172300 | MtrunA17_Chr7g0271401 | 97.585 | 207 | 5 | 0 | 1 | 207 | 1 | 207 | 5.39e-150 | 414 |
| Msa0172300 | MtrunA17_Chr5g0409231 | 96.618 | 207 | 7 | 0 | 1 | 207 | 1 | 207 | 1.09e-148 | 411 |
| Msa0172300 | MtrunA17_Chr8g0369561 | 90.196 | 51 | 5 | 0 | 134 | 184 | 7 | 57 | 2.88e-27 | 98.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0172300 | AT3G49010.3 | 86.911 | 191 | 25 | 0 | 2 | 192 | 1 | 191 | 3.19e-125 | 352 |
| Msa0172300 | AT3G49010.6 | 86.911 | 191 | 25 | 0 | 2 | 192 | 1 | 191 | 3.19e-125 | 352 |
| Msa0172300 | AT3G49010.1 | 86.911 | 191 | 25 | 0 | 2 | 192 | 1 | 191 | 3.19e-125 | 352 |
| Msa0172300 | AT3G49010.2 | 86.911 | 191 | 25 | 0 | 2 | 192 | 1 | 191 | 3.19e-125 | 352 |
| Msa0172300 | AT3G49010.7 | 86.911 | 191 | 25 | 0 | 2 | 192 | 1 | 191 | 3.19e-125 | 352 |
| Msa0172300 | AT3G49010.4 | 86.387 | 191 | 24 | 1 | 2 | 192 | 1 | 189 | 8.70e-123 | 346 |
| Msa0172300 | AT5G23900.1 | 84.946 | 186 | 28 | 0 | 2 | 187 | 1 | 186 | 1.16e-118 | 335 |
| Msa0172300 | AT3G48960.1 | 76.562 | 192 | 45 | 0 | 2 | 193 | 1 | 192 | 4.52e-108 | 309 |
| Msa0172300 | AT3G49010.5 | 62.304 | 191 | 19 | 1 | 2 | 192 | 1 | 138 | 4.19e-79 | 233 |
Find 91 sgRNAs with CRISPR-Local
Find 179 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACTTTAATAACCATAAATT+TGG | 0.083718 | 1_4:-57294166 | Msa0172300:three_prime_UTR |
| TTCTAAAGAACCCAAATTTA+TGG | 0.096605 | 1_4:+57294155 | None:intergenic |
| TGTTCATAAGAAAACTAATT+TGG | 0.184293 | 1_4:+57294298 | None:intergenic |
| GAATAACAATTAGGGTTTAA+AGG | 0.240411 | 1_4:+57296548 | None:intergenic |
| GTCCTGTCACTTAAGTTTGT+TGG | 0.303379 | 1_4:-57294229 | Msa0172300:three_prime_UTR |
| AAATCTTCACTGCCTTCTTT+TGG | 0.308723 | 1_4:+57295906 | None:intergenic |
| CAAGTGAAGGAATAACAATT+AGG | 0.312935 | 1_4:+57296539 | None:intergenic |
| TTGGTCTTGCGTGCGCGCCT+TGG | 0.314350 | 1_4:+57294737 | None:intergenic |
| TCGCCGCAAGAACCGTTCTT+TGG | 0.319042 | 1_4:-57294819 | Msa0172300:CDS |
| TGCTTACGGAAGTGTTCATT+TGG | 0.319315 | 1_4:+57296318 | None:intergenic |
| ATGGTTGGAGCAAGCTTCTT+GGG | 0.323930 | 1_4:+57294860 | None:intergenic |
| GCGCACCAACAAGCGTCATT+TGG | 0.336081 | 1_4:-57294431 | Msa0172300:CDS |
| GCCAACTGTTGAACTTGTTA+AGG | 0.359245 | 1_4:-57294503 | Msa0172300:CDS |
| TGGTCTTGCGTGCGCGCCTT+GGG | 0.368380 | 1_4:+57294738 | None:intergenic |
| AATGGTTGGAGCAAGCTTCT+TGG | 0.375579 | 1_4:+57294859 | None:intergenic |
| CAAAGGTCCAGCGGTTGGCC+GGG | 0.376507 | 1_4:+57295880 | None:intergenic |
| CGCACCAACAAGCGTCATTT+GGG | 0.378501 | 1_4:-57294430 | Msa0172300:CDS |
| TTCAAGAGAAAATCCTTTCC+CGG | 0.387347 | 1_4:+57295808 | None:intergenic |
| CGTCTCCTGGTCTTCCTAGC+TGG | 0.389013 | 1_4:+57296261 | None:intergenic |
| AAGTGAAGGAATAACAATTA+GGG | 0.391520 | 1_4:+57296540 | None:intergenic |
| ACTTTAATAACCATAAATTT+GGG | 0.396839 | 1_4:-57294165 | Msa0172300:three_prime_UTR |
| TTACTGGGCTTAGATGATAA+TGG | 0.403427 | 1_4:+57296594 | None:intergenic |
| TCATGAAACAGCTATATGAT+TGG | 0.405835 | 1_4:+57294331 | None:intergenic |
| GCAGTTTGACCGTGAACAAT+TGG | 0.409288 | 1_4:+57295854 | None:intergenic |
| TCAAAGGTCCAGCGGTTGGC+CGG | 0.411486 | 1_4:+57295879 | None:intergenic |
| AAAGGTCCAGCGGTTGGCCG+GGG | 0.418246 | 1_4:+57295881 | None:intergenic |
| CATAGTTCTGCCAATGCTTA+CGG | 0.420637 | 1_4:+57296304 | None:intergenic |
| TACTGGGCTTAGATGATAAT+GGG | 0.421021 | 1_4:+57296595 | None:intergenic |
| AGCAAGCTTCTTGGGGATAC+CGG | 0.426394 | 1_4:+57294868 | None:intergenic |
| ACATGGTGGTAAAACTATTA+CGG | 0.434728 | 1_4:+57294101 | None:intergenic |
| AGTGACAGGACACAGAATAA+TGG | 0.445448 | 1_4:+57294241 | None:intergenic |
| GAGAGCTGCTGAGGCAGAAA+AGG | 0.445694 | 1_4:-57294395 | Msa0172300:CDS |
| ATTAAAGTAAGCAATTGAAC+AGG | 0.452794 | 1_4:+57294180 | None:intergenic |
| GCTTACGGAAGTGTTCATTT+GGG | 0.453054 | 1_4:+57296319 | None:intergenic |
| GGCCAACCGCTGGACCTTTG+AGG | 0.459880 | 1_4:-57295877 | Msa0172300:CDS |
| CGCAAGAACCGTTCTTTGGA+GGG | 0.473099 | 1_4:-57294815 | Msa0172300:CDS |
| AGGCTGGAGCTGGGAGAAGA+TGG | 0.476355 | 1_4:+57296513 | None:intergenic |
| AGCACCCAAATGACGCTTGT+TGG | 0.478609 | 1_4:+57294426 | None:intergenic |
| CCTTGGGAAAACAACCAACT+TGG | 0.479943 | 1_4:+57294754 | None:intergenic |
| TAGGAAGACCAGGAGACGCT+TGG | 0.484150 | 1_4:-57296256 | Msa0172300:CDS |
| CCTTTGAGGCCAATTGTTCA+CGG | 0.485229 | 1_4:-57295863 | Msa0172300:CDS |
| GGAATCCATGATTTAAGACT+TGG | 0.487015 | 1_4:+57294273 | None:intergenic |
| ACAAGCGTCATTTGGGTGCT+AGG | 0.489744 | 1_4:-57294423 | Msa0172300:CDS |
| CCGCAAGAACCGTTCTTTGG+AGG | 0.494965 | 1_4:-57294816 | Msa0172300:CDS |
| AGGAAGACCAGGAGACGCTT+GGG | 0.497890 | 1_4:-57296255 | Msa0172300:intron |
| GTAATTACCCAAGCGTCTCC+TGG | 0.500114 | 1_4:+57296248 | None:intergenic |
| GACGCTTGTTGGTGCGCTCA+AGG | 0.500487 | 1_4:+57294437 | None:intergenic |
| TAAGGTTACAGATGAAATGA+AGG | 0.502882 | 1_4:-57294485 | Msa0172300:CDS |
| AAGAAGCTTGCTCCAACCAT+TGG | 0.507390 | 1_4:-57294857 | Msa0172300:CDS |
| CAATCGGCAAGTATGATCCT+TGG | 0.510540 | 1_4:+57294536 | None:intergenic |
| ACATGCCAAGTCTTAAATCA+TGG | 0.510697 | 1_4:-57294278 | Msa0172300:three_prime_UTR |
| GTTGGCTTCTCCCTCACAAT+CGG | 0.511949 | 1_4:+57294520 | None:intergenic |
| GTGGCATTAGCAAGTTCCTC+AGG | 0.518954 | 1_4:+57294565 | None:intergenic |
| AAGAACGGTTCTTGCGGCGA+TGG | 0.520566 | 1_4:+57294822 | None:intergenic |
| ATGAAACTTCGTGCCGGGAA+AGG | 0.523982 | 1_4:-57295821 | Msa0172300:CDS |
| ACCTTAACAAGTTCAACAGT+TGG | 0.524264 | 1_4:+57294502 | None:intergenic |
| CCGTGAACAATTGGCCTCAA+AGG | 0.527396 | 1_4:+57295863 | None:intergenic |
| TTATAAACTCGGACTTCTCA+AGG | 0.536902 | 1_4:+57294355 | None:intergenic |
| AACCAACAAACTTAAGTGAC+AGG | 0.540420 | 1_4:+57294227 | None:intergenic |
| ATCAACCAGCTAGGAAGACC+AGG | 0.552070 | 1_4:-57296266 | Msa0172300:CDS |
| GGCCTCAAAGGTCCAGCGGT+TGG | 0.553506 | 1_4:+57295875 | None:intergenic |
| GATCATACTTGCCGATTGTG+AGG | 0.555446 | 1_4:-57294531 | Msa0172300:CDS |
| ACAACATGAAACTTCGTGCC+GGG | 0.563845 | 1_4:-57295826 | Msa0172300:CDS |
| AAGGTCCAGCGGTTGGCCGG+GGG | 0.569118 | 1_4:+57295882 | None:intergenic |
| TACAACATGAAACTTCGTGC+CGG | 0.570733 | 1_4:-57295827 | Msa0172300:CDS |
| GAAAACATACAAGGCCAAGT+TGG | 0.571763 | 1_4:-57294768 | Msa0172300:CDS |
| ATATGATTGGATTATAAACT+CGG | 0.572859 | 1_4:+57294344 | None:intergenic |
| ATGAACACTTCCGTAAGCAT+TGG | 0.574424 | 1_4:-57296314 | Msa0172300:CDS |
| GAGAAGATGGCGGCAAGTGA+AGG | 0.576757 | 1_4:+57296526 | None:intergenic |
| TCAACAGAAATGCCAATGGT+TGG | 0.577031 | 1_4:+57294845 | None:intergenic |
| TAGGCTCAAGAGAGCTGCTG+AGG | 0.578191 | 1_4:-57294404 | Msa0172300:CDS |
| CCTCCAAAGAACGGTTCTTG+CGG | 0.586577 | 1_4:+57294816 | None:intergenic |
| CATGGTTCAATCAACCAGCT+AGG | 0.591929 | 1_4:-57296275 | Msa0172300:CDS |
| CTTGCAGACCCTCCAAAGAA+CGG | 0.595271 | 1_4:+57294807 | None:intergenic |
| AACATTGTTGTGCTTCACCA+TGG | 0.595442 | 1_4:+57296344 | None:intergenic |
| ACAGAATAATGGTAAAGCAA+AGG | 0.597306 | 1_4:+57294252 | None:intergenic |
| ATCATACTTGCCGATTGTGA+GGG | 0.601270 | 1_4:-57294530 | Msa0172300:CDS |
| TATATTATCAAATTAATACA+TGG | 0.607296 | 1_4:+57294084 | None:intergenic |
| TGGTTGGAGCAAGCTTCTTG+GGG | 0.611973 | 1_4:+57294861 | None:intergenic |
| GCTAATGCCACACAAGTCCA+AGG | 0.623000 | 1_4:-57294553 | Msa0172300:CDS |
| CTGGAGCTGGGAGAAGATGG+CGG | 0.624743 | 1_4:+57296516 | None:intergenic |
| AAGGCGCGCACGCAAGACCA+AGG | 0.626116 | 1_4:-57294735 | Msa0172300:intron |
| GTCTGCAAGCTAATGTGCAG+AGG | 0.628654 | 1_4:-57294793 | Msa0172300:CDS |
| GGCAGAACTATGTCAAAACA+TGG | 0.632555 | 1_4:-57296293 | Msa0172300:CDS |
| GGCTGGGGACTCTACACCTG+AGG | 0.639995 | 1_4:-57294581 | Msa0172300:CDS |
| TTATAGGTATGATATTATGG+AGG | 0.648186 | 1_4:-57296618 | Msa0172300:five_prime_UTR |
| GCAGAGGCTGAAAACATACA+AGG | 0.656774 | 1_4:-57294777 | Msa0172300:CDS |
| ATGGTCAACAGAAATGCCAA+TGG | 0.663073 | 1_4:+57294841 | None:intergenic |
| ATTATCAAATTAATACATGG+TGG | 0.683352 | 1_4:+57294087 | None:intergenic |
| AATTGGCCTCAAAGGTCCAG+CGG | 0.684475 | 1_4:+57295871 | None:intergenic |
| GTATGATCCTTGGACTTGTG+TGG | 0.704331 | 1_4:+57294546 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTAAGTTGTAAAAATAT+AGG | + | chr1_4:57294493-57294512 | None:intergenic | 10.0% |
| !!! | ATTTTATAGGTATGATATTA+TGG | - | chr1_4:57294095-57294114 | Msa0172300:three_prime_UTR | 15.0% |
| !! | ATATCTATAAAACTAGAAAA+CGG | + | chr1_4:57294240-57294259 | None:intergenic | 15.0% |
| !! | AAGTTATAATATGTAGTTTA+TGG | + | chr1_4:57295793-57295812 | None:intergenic | 15.0% |
| !! | TACTTTAATAACCATAAATT+TGG | - | chr1_4:57296550-57296569 | Msa0172300:five_prime_UTR | 15.0% |
| !! | ACTTTAATAACCATAAATTT+GGG | - | chr1_4:57296551-57296570 | Msa0172300:five_prime_UTR | 15.0% |
| !!! | AAGGCTTGTTTTTTATTTTT+AGG | - | chr1_4:57294345-57294364 | Msa0172300:three_prime_UTR | 20.0% |
| !! | ATATGTTACTCTTAAATGAT+TGG | + | chr1_4:57295355-57295374 | None:intergenic | 20.0% |
| !! | TAACATATAGTTCTTGTAAT+GGG | - | chr1_4:57295367-57295386 | Msa0172300:intron | 20.0% |
| !!! | TTAATAATGGGTTTAACATA+TGG | - | chr1_4:57295631-57295650 | Msa0172300:intron | 20.0% |
| !! | ATAAACTAAAATCATCATTG+AGG | + | chr1_4:57296018-57296037 | None:intergenic | 20.0% |
| !!! | TTGAAATAGGAAGTATTAAT+CGG | - | chr1_4:57296080-57296099 | Msa0172300:intron | 20.0% |
| !!! | AATTATTTTTATTTGTCTGC+AGG | - | chr1_4:57296114-57296133 | Msa0172300:intron | 20.0% |
| !! | ATATGATTGGATTATAAACT+CGG | + | chr1_4:57296375-57296394 | None:intergenic | 20.0% |
| !! | TGTTCATAAGAAAACTAATT+TGG | + | chr1_4:57296421-57296440 | None:intergenic | 20.0% |
| ! | TTATAGGTATGATATTATGG+AGG | - | chr1_4:57294098-57294117 | Msa0172300:three_prime_UTR | 25.0% |
| !! | ATGCAGTTTTTATGATTACT+GGG | + | chr1_4:57294140-57294159 | None:intergenic | 25.0% |
| !! | TATGCAGTTTTTATGATTAC+TGG | + | chr1_4:57294141-57294160 | None:intergenic | 25.0% |
| ! | GAATAACAATTAGGGTTTAA+AGG | + | chr1_4:57294171-57294190 | None:intergenic | 25.0% |
| ! | AAGTGAAGGAATAACAATTA+GGG | + | chr1_4:57294179-57294198 | None:intergenic | 25.0% |
| !!! | TTTTATTTTTAGGTAAGCCA+TGG | - | chr1_4:57294355-57294374 | Msa0172300:three_prime_UTR | 25.0% |
| !! | TTTTACGCTAAAGACTAAAT+TGG | - | chr1_4:57295054-57295073 | Msa0172300:intron | 25.0% |
| ! | TATTAGATAGAACTAATGCA+GGG | + | chr1_4:57295102-57295121 | None:intergenic | 25.0% |
| ! | ATATTAGATAGAACTAATGC+AGG | + | chr1_4:57295103-57295122 | None:intergenic | 25.0% |
| ! | ATCTAATATAATCATTGTCG+TGG | - | chr1_4:57295114-57295133 | Msa0172300:intron | 25.0% |
| !! | TCATATGACTAATTGATTTC+TGG | - | chr1_4:57295198-57295217 | Msa0172300:intron | 25.0% |
| !! | CATATGACTAATTGATTTCT+GGG | - | chr1_4:57295199-57295218 | Msa0172300:intron | 25.0% |
| !! | CTACAGTTTAATCTATTTTC+GGG | + | chr1_4:57295263-57295282 | None:intergenic | 25.0% |
| !! | CCTACAGTTTAATCTATTTT+CGG | + | chr1_4:57295264-57295283 | None:intergenic | 25.0% |
| ! | TACAGAATTGAAGACTATAT+AGG | + | chr1_4:57295300-57295319 | None:intergenic | 25.0% |
| ! | GTAACATATAGTTCTTGTAA+TGG | - | chr1_4:57295366-57295385 | Msa0172300:intron | 25.0% |
| !! | TAATGATCGGTTTATACATA+TGG | - | chr1_4:57295579-57295598 | Msa0172300:intron | 25.0% |
| ! | TCTGTCATAAAAACAAAAGT+AGG | + | chr1_4:57295825-57295844 | None:intergenic | 25.0% |
| ! | ATTAAAGTAAGCAATTGAAC+AGG | + | chr1_4:57296539-57296558 | None:intergenic | 25.0% |
| !! | TTCTAAAGAACCCAAATTTA+TGG | + | chr1_4:57296564-57296583 | None:intergenic | 25.0% |
| CAAGTGAAGGAATAACAATT+AGG | + | chr1_4:57294180-57294199 | None:intergenic | 30.0% | |
| TCTATAAAACTAGAAAACGG+CGG | + | chr1_4:57294237-57294256 | None:intergenic | 30.0% | |
| ACCAGATCAGTTCAATATTT+AGG | - | chr1_4:57294290-57294309 | Msa0172300:three_prime_UTR | 30.0% | |
| CCAGATCAGTTCAATATTTA+GGG | - | chr1_4:57294291-57294310 | Msa0172300:three_prime_UTR | 30.0% | |
| CAAACAAACAATTTAAGCCA+CGG | + | chr1_4:57294608-57294627 | None:intergenic | 30.0% | |
| ! | ATTTTCTCTTGAAGAGTTGA+AGG | - | chr1_4:57294918-57294937 | Msa0172300:intron | 30.0% |
| !! | TCTGTGTAGATGTTACTTTA+TGG | - | chr1_4:57294978-57294997 | Msa0172300:intron | 30.0% |
| !! | CTGTGTAGATGTTACTTTAT+GGG | - | chr1_4:57294979-57294998 | Msa0172300:intron | 30.0% |
| CCGAAAATAGATTAAACTGT+AGG | - | chr1_4:57295261-57295280 | Msa0172300:intron | 30.0% | |
| TACTCTCAAGTTACTAAACA+TGG | + | chr1_4:57295331-57295350 | None:intergenic | 30.0% | |
| TGCATATGACACTTAAATGA+TGG | - | chr1_4:57295445-57295464 | Msa0172300:intron | 30.0% | |
| GCATATGACACTTAAATGAT+GGG | - | chr1_4:57295446-57295465 | Msa0172300:intron | 30.0% | |
| !! | AAATGATGGGTTTATACACA+TGG | - | chr1_4:57295459-57295478 | Msa0172300:intron | 30.0% |
| !! | AAACGATGGGTTTTTACATA+TGG | - | chr1_4:57295513-57295532 | Msa0172300:intron | 30.0% |
| !! | TGGATGATGGTTTTTACATA+TGG | - | chr1_4:57295599-57295618 | Msa0172300:intron | 30.0% |
| ! | ATGGCTCTACACTTTAATAA+TGG | - | chr1_4:57295618-57295637 | Msa0172300:intron | 30.0% |
| ! | TGGCTCTACACTTTAATAAT+GGG | - | chr1_4:57295619-57295638 | Msa0172300:intron | 30.0% |
| AATAGCCATATGCAAAAACT+TGG | + | chr1_4:57295664-57295683 | None:intergenic | 30.0% | |
| !!! | CTAGAGTTCAAGTTTTATTC+AGG | + | chr1_4:57295735-57295754 | None:intergenic | 30.0% |
| TAGTTGAAGACTATAAAGTC+TGG | + | chr1_4:57295765-57295784 | None:intergenic | 30.0% | |
| TTGAGGTTCTTATATTACCT+TGG | + | chr1_4:57296001-57296020 | None:intergenic | 30.0% | |
| TAAGGTTACAGATGAAATGA+AGG | - | chr1_4:57296231-57296250 | Msa0172300:intron | 30.0% | |
| TCATGAAACAGCTATATGAT+TGG | + | chr1_4:57296388-57296407 | None:intergenic | 30.0% | |
| ACAGAATAATGGTAAAGCAA+AGG | + | chr1_4:57296467-57296486 | None:intergenic | 30.0% | |
| ACATGGTGGTAAAACTATTA+CGG | + | chr1_4:57296618-57296637 | None:intergenic | 30.0% | |
| TACTGGGCTTAGATGATAAT+GGG | + | chr1_4:57294124-57294143 | None:intergenic | 35.0% | |
| TTACTGGGCTTAGATGATAA+TGG | + | chr1_4:57294125-57294144 | None:intergenic | 35.0% | |
| CCCTAAATATTGAACTGATC+TGG | + | chr1_4:57294294-57294313 | None:intergenic | 35.0% | |
| !! | ACTATTCTTCGCTGATTCAA+AGG | - | chr1_4:57294326-57294345 | Msa0172300:three_prime_UTR | 35.0% |
| TCTGCAGTGTCTTGAATTAT+AGG | - | chr1_4:57294668-57294687 | Msa0172300:intron | 35.0% | |
| ! | AAATCTTCACTGCCTTCTTT+TGG | + | chr1_4:57294813-57294832 | None:intergenic | 35.0% |
| TTCAAGAGAAAATCCTTTCC+CGG | + | chr1_4:57294911-57294930 | None:intergenic | 35.0% | |
| !! | AGCTTGTTGAACTTTAACTG+TGG | - | chr1_4:57294947-57294966 | Msa0172300:intron | 35.0% |
| AAACTGTAGGAAAGATCGTA+CGG | - | chr1_4:57295274-57295293 | Msa0172300:intron | 35.0% | |
| GGTTTATACACATGGATGAT+GGG | - | chr1_4:57295467-57295486 | Msa0172300:intron | 35.0% | |
| !!! | GGATGATGGGTTTTTACATA+TGG | - | chr1_4:57295480-57295499 | Msa0172300:intron | 35.0% |
| AAAACCCATCGTTTAAGTGT+CGG | + | chr1_4:57295507-57295526 | None:intergenic | 35.0% | |
| TGGCTAGACACTTTAATGAT+CGG | - | chr1_4:57295566-57295585 | Msa0172300:intron | 35.0% | |
| CGGTTTATACATATGGATGA+TGG | - | chr1_4:57295586-57295605 | Msa0172300:intron | 35.0% | |
| ! | TGACACCAAGTTTTTGCATA+TGG | - | chr1_4:57295656-57295675 | Msa0172300:intron | 35.0% |
| TTGAAGACTATAAAGTCTGG+AGG | + | chr1_4:57295762-57295781 | None:intergenic | 35.0% | |
| !!! | TTGTTTTTATGACAGACTGC+CGG | - | chr1_4:57295829-57295848 | Msa0172300:CDS | 35.0% |
| CAATGATGGTATCAAAGCTA+AGG | + | chr1_4:57296051-57296070 | None:intergenic | 35.0% | |
| !! | ATTTTTATTTGTCTGCAGGC+TGG | - | chr1_4:57296118-57296137 | Msa0172300:intron | 35.0% |
| !! | TTTTTATTTGTCTGCAGGCT+GGG | - | chr1_4:57296119-57296138 | Msa0172300:intron | 35.0% |
| ACCTTAACAAGTTCAACAGT+TGG | + | chr1_4:57296217-57296236 | None:intergenic | 35.0% | |
| TTATAAACTCGGACTTCTCA+AGG | + | chr1_4:57296364-57296383 | None:intergenic | 35.0% | |
| ACATGCCAAGTCTTAAATCA+TGG | - | chr1_4:57296438-57296457 | Msa0172300:intron | 35.0% | |
| ! | GGAATCCATGATTTAAGACT+TGG | + | chr1_4:57296446-57296465 | None:intergenic | 35.0% |
| AACCAACAAACTTAAGTGAC+AGG | + | chr1_4:57296492-57296511 | None:intergenic | 35.0% | |
| AACATTGTTGTGCTTCACCA+TGG | + | chr1_4:57294375-57294394 | None:intergenic | 40.0% | |
| !! | GCTTACGGAAGTGTTCATTT+GGG | + | chr1_4:57294400-57294419 | None:intergenic | 40.0% |
| !! | TGCTTACGGAAGTGTTCATT+TGG | + | chr1_4:57294401-57294420 | None:intergenic | 40.0% |
| ATGAACACTTCCGTAAGCAT+TGG | - | chr1_4:57294402-57294421 | Msa0172300:CDS | 40.0% | |
| ! | CATAGTTCTGCCAATGCTTA+CGG | + | chr1_4:57294415-57294434 | None:intergenic | 40.0% |
| GGCAGAACTATGTCAAAACA+TGG | - | chr1_4:57294423-57294442 | Msa0172300:CDS | 40.0% | |
| GGACAAACATGAGGCAAAAA+CGG | + | chr1_4:57294587-57294606 | None:intergenic | 40.0% | |
| TACAACATGAAACTTCGTGC+CGG | - | chr1_4:57294889-57294908 | Msa0172300:intron | 40.0% | |
| ATGGGCTTGTAGATTTGTGT+TGG | - | chr1_4:57294997-57295016 | Msa0172300:intron | 40.0% | |
| !! | GCAGGGATGCTTATTTTCAT+AGG | + | chr1_4:57295085-57295104 | None:intergenic | 40.0% |
| GGGTTTATACACATGGATGA+TGG | - | chr1_4:57295466-57295485 | Msa0172300:intron | 40.0% | |
| ATGGCTCAACACTTAAACGA+TGG | - | chr1_4:57295499-57295518 | Msa0172300:intron | 40.0% | |
| TGGCTCAACACTTAAACGAT+GGG | - | chr1_4:57295500-57295519 | Msa0172300:intron | 40.0% | |
| AAACCCATCGTTTAAGTGTC+GGG | + | chr1_4:57295539-57295558 | None:intergenic | 40.0% | |
| TCAACAGAAATGCCAATGGT+TGG | + | chr1_4:57295874-57295893 | None:intergenic | 40.0% | |
| ATGGTCAACAGAAATGCCAA+TGG | + | chr1_4:57295878-57295897 | None:intergenic | 40.0% | |
| GAAAACATACAAGGCCAAGT+TGG | - | chr1_4:57295948-57295967 | Msa0172300:intron | 40.0% | |
| TTGATACCATCATTGCTGCT+AGG | - | chr1_4:57296056-57296075 | Msa0172300:intron | 40.0% | |
| TGATACCATCATTGCTGCTA+GGG | - | chr1_4:57296057-57296076 | Msa0172300:intron | 40.0% | |
| ATTGCTGCTAGGGTTGAAAT+AGG | - | chr1_4:57296067-57296086 | Msa0172300:intron | 40.0% | |
| !! | TTTTATTTGTCTGCAGGCTG+GGG | - | chr1_4:57296120-57296139 | Msa0172300:intron | 40.0% |
| ! | ATCATACTTGCCGATTGTGA+GGG | - | chr1_4:57296186-57296205 | Msa0172300:intron | 40.0% |
| !! | GCCAACTGTTGAACTTGTTA+AGG | - | chr1_4:57296213-57296232 | Msa0172300:intron | 40.0% |
| AGTGACAGGACACAGAATAA+TGG | + | chr1_4:57296478-57296497 | None:intergenic | 40.0% | |
| ! | GTCCTGTCACTTAAGTTTGT+TGG | - | chr1_4:57296487-57296506 | Msa0172300:intron | 40.0% |
| CATGGTTCAATCAACCAGCT+AGG | - | chr1_4:57294441-57294460 | Msa0172300:CDS | 45.0% | |
| ! | TTTTGCCTCATGTTTGTCCG+TGG | - | chr1_4:57294588-57294607 | Msa0172300:intron | 45.0% |
| TTAAGCCACGGACAAACATG+AGG | + | chr1_4:57294596-57294615 | None:intergenic | 45.0% | |
| GGGCTACAAAAATCACAGCA+CGG | + | chr1_4:57294789-57294808 | None:intergenic | 45.0% | |
| ! | TTTTGTAGCCCGCCAAAAGA+AGG | - | chr1_4:57294798-57294817 | Msa0172300:CDS | 45.0% |
| ! | TCTTCACTGCCTTCTTTTGG+CGG | + | chr1_4:57294810-57294829 | None:intergenic | 45.0% |
| !! | CCTTTGAGGCCAATTGTTCA+CGG | - | chr1_4:57294853-57294872 | Msa0172300:CDS | 45.0% |
| GCAGTTTGACCGTGAACAAT+TGG | + | chr1_4:57294865-57294884 | None:intergenic | 45.0% | |
| ACAACATGAAACTTCGTGCC+GGG | - | chr1_4:57294890-57294909 | Msa0172300:intron | 45.0% | |
| ATGACCCGACACTTAAACGA+TGG | - | chr1_4:57295532-57295551 | Msa0172300:intron | 45.0% | |
| TGACCCGACACTTAAACGAT+GGG | - | chr1_4:57295533-57295552 | Msa0172300:intron | 45.0% | |
| ATGGTTGGAGCAAGCTTCTT+GGG | + | chr1_4:57295859-57295878 | None:intergenic | 45.0% | |
| AATGGTTGGAGCAAGCTTCT+TGG | + | chr1_4:57295860-57295879 | None:intergenic | 45.0% | |
| ! | AAGAAGCTTGCTCCAACCAT+TGG | - | chr1_4:57295859-57295878 | Msa0172300:CDS | 45.0% |
| GCAGAGGCTGAAAACATACA+AGG | - | chr1_4:57295939-57295958 | Msa0172300:intron | 45.0% | |
| CCTTGGGAAAACAACCAACT+TGG | + | chr1_4:57295965-57295984 | None:intergenic | 45.0% | |
| !!! | CCAAGTTGGTTGTTTTCCCA+AGG | - | chr1_4:57295962-57295981 | Msa0172300:intron | 45.0% |
| TTCAACCCTAGCAGCAATGA+TGG | + | chr1_4:57296065-57296084 | None:intergenic | 45.0% | |
| GTATGATCCTTGGACTTGTG+TGG | + | chr1_4:57296173-57296192 | None:intergenic | 45.0% | |
| CAATCGGCAAGTATGATCCT+TGG | + | chr1_4:57296183-57296202 | None:intergenic | 45.0% | |
| ! | GATCATACTTGCCGATTGTG+AGG | - | chr1_4:57296185-57296204 | Msa0172300:intron | 45.0% |
| ATCAACCAGCTAGGAAGACC+AGG | - | chr1_4:57294450-57294469 | Msa0172300:CDS | 50.0% | |
| GTAATTACCCAAGCGTCTCC+TGG | + | chr1_4:57294471-57294490 | None:intergenic | 50.0% | |
| ! | CTTCACTGCCTTCTTTTGGC+GGG | + | chr1_4:57294809-57294828 | None:intergenic | 50.0% |
| ! | AGGCAGTGAAGATTTTCCCC+CGG | - | chr1_4:57294818-57294837 | Msa0172300:CDS | 50.0% |
| ! | AATTGGCCTCAAAGGTCCAG+CGG | + | chr1_4:57294848-57294867 | None:intergenic | 50.0% |
| ! | CCGTGAACAATTGGCCTCAA+AGG | + | chr1_4:57294856-57294875 | None:intergenic | 50.0% |
| ATGAAACTTCGTGCCGGGAA+AGG | - | chr1_4:57294895-57294914 | Msa0172300:intron | 50.0% | |
| AGCAAGCTTCTTGGGGATAC+CGG | + | chr1_4:57295851-57295870 | None:intergenic | 50.0% | |
| TGGTTGGAGCAAGCTTCTTG+GGG | + | chr1_4:57295858-57295877 | None:intergenic | 50.0% | |
| CCTCCAAAGAACGGTTCTTG+CGG | + | chr1_4:57295903-57295922 | None:intergenic | 50.0% | |
| CGCAAGAACCGTTCTTTGGA+GGG | - | chr1_4:57295901-57295920 | Msa0172300:CDS | 50.0% | |
| CTTGCAGACCCTCCAAAGAA+CGG | + | chr1_4:57295912-57295931 | None:intergenic | 50.0% | |
| GTCTGCAAGCTAATGTGCAG+AGG | - | chr1_4:57295923-57295942 | Msa0172300:intron | 50.0% | |
| GTGGCATTAGCAAGTTCCTC+AGG | + | chr1_4:57296154-57296173 | None:intergenic | 50.0% | |
| GCTAATGCCACACAAGTCCA+AGG | - | chr1_4:57296163-57296182 | Msa0172300:intron | 50.0% | |
| ! | GTTGGCTTCTCCCTCACAAT+CGG | + | chr1_4:57296199-57296218 | None:intergenic | 50.0% |
| CGCACCAACAAGCGTCATTT+GGG | - | chr1_4:57296286-57296305 | Msa0172300:CDS | 50.0% | |
| AGCACCCAAATGACGCTTGT+TGG | + | chr1_4:57296293-57296312 | None:intergenic | 50.0% | |
| ACAAGCGTCATTTGGGTGCT+AGG | - | chr1_4:57296293-57296312 | Msa0172300:CDS | 50.0% | |
| ! | GAGAAGATGGCGGCAAGTGA+AGG | + | chr1_4:57294193-57294212 | None:intergenic | 55.0% |
| AGAAAACGGCGGTACCTGTG+AGG | + | chr1_4:57294226-57294245 | None:intergenic | 55.0% | |
| TAGGAAGACCAGGAGACGCT+TGG | - | chr1_4:57294460-57294479 | Msa0172300:CDS | 55.0% | |
| AGGAAGACCAGGAGACGCTT+GGG | - | chr1_4:57294461-57294480 | Msa0172300:CDS | 55.0% | |
| AAGAACGGTTCTTGCGGCGA+TGG | + | chr1_4:57295897-57295916 | None:intergenic | 55.0% | |
| TCGCCGCAAGAACCGTTCTT+TGG | - | chr1_4:57295897-57295916 | Msa0172300:CDS | 55.0% | |
| CCGCAAGAACCGTTCTTTGG+AGG | - | chr1_4:57295900-57295919 | Msa0172300:CDS | 55.0% | |
| GCGCACCAACAAGCGTCATT+TGG | - | chr1_4:57296285-57296304 | Msa0172300:CDS | 55.0% | |
| TAGGCTCAAGAGAGCTGCTG+AGG | - | chr1_4:57296312-57296331 | Msa0172300:CDS | 55.0% | |
| GAGAGCTGCTGAGGCAGAAA+AGG | - | chr1_4:57296321-57296340 | Msa0172300:CDS | 55.0% | |
| CTGGAGCTGGGAGAAGATGG+CGG | + | chr1_4:57294203-57294222 | None:intergenic | 60.0% | |
| AGGCTGGAGCTGGGAGAAGA+TGG | + | chr1_4:57294206-57294225 | None:intergenic | 60.0% | |
| GTACCTGTGAGGCTGGAGCT+GGG | + | chr1_4:57294215-57294234 | None:intergenic | 60.0% | |
| ! | CGTCTCCTGGTCTTCCTAGC+TGG | + | chr1_4:57294458-57294477 | None:intergenic | 60.0% |
| TCAAAGGTCCAGCGGTTGGC+CGG | + | chr1_4:57294840-57294859 | None:intergenic | 60.0% | |
| ! | GACGCTTGTTGGTGCGCTCA+AGG | + | chr1_4:57296282-57296301 | None:intergenic | 60.0% |
| TCTCCCAGCTCCAGCCTCAC+AGG | - | chr1_4:57294209-57294228 | Msa0172300:three_prime_UTR | 65.0% | |
| GGTACCTGTGAGGCTGGAGC+TGG | + | chr1_4:57294216-57294235 | None:intergenic | 65.0% | |
| AACGGCGGTACCTGTGAGGC+TGG | + | chr1_4:57294222-57294241 | None:intergenic | 65.0% | |
| ! | ATTTTCCCCCGGCCAACCGC+TGG | - | chr1_4:57294829-57294848 | Msa0172300:CDS | 65.0% |
| ! | AAAGGTCCAGCGGTTGGCCG+GGG | + | chr1_4:57294838-57294857 | None:intergenic | 65.0% |
| ! | CAAAGGTCCAGCGGTTGGCC+GGG | + | chr1_4:57294839-57294858 | None:intergenic | 65.0% |
| GGCCAACCGCTGGACCTTTG+AGG | - | chr1_4:57294839-57294858 | Msa0172300:CDS | 65.0% | |
| GGCCTCAAAGGTCCAGCGGT+TGG | + | chr1_4:57294844-57294863 | None:intergenic | 65.0% | |
| ! | TGGTCTTGCGTGCGCGCCTT+GGG | + | chr1_4:57295981-57296000 | None:intergenic | 65.0% |
| !! | TTGGTCTTGCGTGCGCGCCT+TGG | + | chr1_4:57295982-57296001 | None:intergenic | 65.0% |
| AAGGCGCGCACGCAAGACCA+AGG | - | chr1_4:57295981-57296000 | Msa0172300:intron | 65.0% | |
| GGCTGGGGACTCTACACCTG+AGG | - | chr1_4:57296135-57296154 | Msa0172300:intron | 65.0% | |
| ! | AAGGTCCAGCGGTTGGCCGG+GGG | + | chr1_4:57294837-57294856 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 57294092 | 57296646 | 57294092 | ID=Msa0172300;Name=Msa0172300 |
| chr1_4 | mRNA | 57294092 | 57296646 | 57294092 | ID=Msa0172300-mRNA-1;Parent=Msa0172300;Name=Msa0172300-mRNA-1;_AED=0.12;_eAED=0.12;_QI=132|1|1|1|0.75|0.6|5|289|207 |
| chr1_4 | exon | 57294092 | 57294602 | 57294092 | ID=Msa0172300-mRNA-1:exon:17556;Parent=Msa0172300-mRNA-1 |
| chr1_4 | exon | 57294736 | 57294894 | 57294736 | ID=Msa0172300-mRNA-1:exon:17555;Parent=Msa0172300-mRNA-1 |
| chr1_4 | exon | 57295799 | 57295932 | 57295799 | ID=Msa0172300-mRNA-1:exon:17554;Parent=Msa0172300-mRNA-1 |
| chr1_4 | exon | 57296256 | 57296371 | 57296256 | ID=Msa0172300-mRNA-1:exon:17553;Parent=Msa0172300-mRNA-1 |
| chr1_4 | exon | 57296522 | 57296646 | 57296522 | ID=Msa0172300-mRNA-1:exon:17552;Parent=Msa0172300-mRNA-1 |
| chr1_4 | five_prime_UTR | 57296522 | 57296646 | 57296522 | ID=Msa0172300-mRNA-1:five_prime_utr;Parent=Msa0172300-mRNA-1 |
| chr1_4 | five_prime_UTR | 57296365 | 57296371 | 57296365 | ID=Msa0172300-mRNA-1:five_prime_utr;Parent=Msa0172300-mRNA-1 |
| chr1_4 | CDS | 57296256 | 57296364 | 57296256 | ID=Msa0172300-mRNA-1:cds;Parent=Msa0172300-mRNA-1 |
| chr1_4 | CDS | 57295799 | 57295932 | 57295799 | ID=Msa0172300-mRNA-1:cds;Parent=Msa0172300-mRNA-1 |
| chr1_4 | CDS | 57294736 | 57294894 | 57294736 | ID=Msa0172300-mRNA-1:cds;Parent=Msa0172300-mRNA-1 |
| chr1_4 | CDS | 57294381 | 57294602 | 57294381 | ID=Msa0172300-mRNA-1:cds;Parent=Msa0172300-mRNA-1 |
| chr1_4 | three_prime_UTR | 57294092 | 57294380 | 57294092 | ID=Msa0172300-mRNA-1:three_prime_utr;Parent=Msa0172300-mRNA-1 |
| Gene Sequence |
| Protein sequence |
