AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0669160


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0669160 MtrunA17_Chr4g0008321 92.580 283 12 3 1 280 1 277 1.94e-180 500
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0669160 AT3G09210.1 53.992 263 111 5 3 259 7 265 2.19e-85 259

Find 81 sgRNAs with CRISPR-Local

Find 339 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGATTTGTTATTATTATTT+TGG 0.155985 4_4:-10721388 None:intergenic
ATCCGATTCTAACTCTTTAT+TGG 0.160104 4_4:-10724933 None:intergenic
GATGGTGTTGGTGGGTTTAT+TGG 0.167069 4_4:+10723287 Msa0669160:CDS
GGGGTTTGGTGGAGAGAGGG+GGG 0.251180 4_4:-10721516 None:intergenic
TGTGACTGTTAGTTGGTTAG+AGG 0.282285 4_4:-10724996 None:intergenic
GCAGAACCTGTGACAAGTTT+AGG 0.296638 4_4:-10725046 None:intergenic
TGAAGCTCTTGCTCGTTCTT+TGG 0.300864 4_4:+10721795 Msa0669160:CDS
TGCTCGTGTTTCTCGTGTTA+AGG 0.306054 4_4:+10721759 Msa0669160:CDS
TCCGATTCTAACTCTTTATT+GGG 0.320190 4_4:-10724932 None:intergenic
TCACCAGAGATTGGAATGTT+TGG 0.345740 4_4:+10721407 Msa0669160:five_prime_UTR
GCTCGTGTTTCTCGTGTTAA+GGG 0.347157 4_4:+10721760 Msa0669160:CDS
GATTGGAATGTTTGGAACTT+TGG 0.348338 4_4:+10721415 Msa0669160:five_prime_UTR
GGGGTGTAGAAGCGTGGTGG+TGG 0.350299 4_4:-10721496 None:intergenic
GCCAGTAGCTGAGGATGATA+TGG 0.369363 4_4:+10724811 Msa0669160:CDS
TTACTGAGCCTAAAATTTGT+AGG 0.372362 4_4:+10726442 Msa0669160:three_prime_UTR
AAAATCAAAGCCTCTGTTCC+CGG 0.379949 4_4:+10723205 Msa0669160:CDS
TCATCCTCAGCTACTGGCCT+TGG 0.387686 4_4:-10724806 None:intergenic
CTATGAAGTCAGATGAATAT+TGG 0.387930 4_4:-10726619 None:intergenic
GGTGGAGGTGACGGAGGTGG+CGG 0.389896 4_4:-10721551 None:intergenic
CTTGATAATCTCATGAAGTT+AGG 0.396459 4_4:+10721721 Msa0669160:CDS
GAGAGAGCAACGCAACAAAC+TGG 0.402702 4_4:+10721626 Msa0669160:CDS
TGCTTACGTGTTTCCAACCT+TGG 0.407264 4_4:-10723312 None:intergenic
GATAGAAGTAGAAGATGAAA+GGG 0.426555 4_4:+10721449 Msa0669160:exon
AATAACAAATCACCAGAGAT+TGG 0.428556 4_4:+10721398 Msa0669160:five_prime_UTR
GGAGGTGGAGGTGACGGAGG+TGG 0.433248 4_4:-10721554 None:intergenic
CTTCTTCTGTGACTGTTAGT+TGG 0.434285 4_4:-10725003 None:intergenic
CAAACCTTAAAGTCGATATC+AGG 0.436160 4_4:-10721829 None:intergenic
GGGTTTGGTGGAGAGAGGGG+GGG 0.436484 4_4:-10721515 None:intergenic
GTTCCAAACATTCCAATCTC+TGG 0.440474 4_4:-10721410 None:intergenic
TACTGAGCCTAAAATTTGTA+GGG 0.449157 4_4:+10726443 Msa0669160:three_prime_UTR
AAAATGTGGCTGCAATGTTA+AGG 0.449636 4_4:+10726547 Msa0669160:three_prime_UTR
GATACAAGTGATACAATTGC+AGG 0.455207 4_4:-10726582 None:intergenic
TATGGAAGCAATCTTCAAAC+AGG 0.463026 4_4:+10724829 Msa0669160:CDS
TCCATATCATCCTCAGCTAC+TGG 0.464176 4_4:-10724812 None:intergenic
AGATAGAAGTAGAAGATGAA+AGG 0.469203 4_4:+10721448 Msa0669160:exon
AGAAAGGCTGTCGTAAACTC+TGG 0.484840 4_4:+10724905 Msa0669160:CDS
GGATGCTAACGCTTCACCTA+TGG 0.494851 4_4:+10721470 Msa0669160:CDS
TAACGGCATTAGTTAGTCTC+TGG 0.497824 4_4:-10725797 None:intergenic
GAACAATTTCACTAACATCT+AGG 0.499446 4_4:-10725775 None:intergenic
TTGTCGATTCAAAGCCCAAA+AGG 0.504827 4_4:+10724960 Msa0669160:CDS
CTAACTTCATGAGATTATCA+AGG 0.505513 4_4:-10721720 None:intergenic
TGTCGATTCAAAGCCCAAAA+GGG 0.509641 4_4:+10724961 Msa0669160:CDS
TGACTTCATAGAAGAGATTG+AGG 0.509761 4_4:+10726631 Msa0669160:three_prime_UTR
TGGTGGGTTTATTGGATCCA+AGG 0.512573 4_4:+10723295 Msa0669160:CDS
TGAAACATACCATCAGGAAA+AGG 0.518160 4_4:-10725828 None:intergenic
TCCCAATAAAGAGTTAGAAT+CGG 0.520203 4_4:+10724931 Msa0669160:CDS
AGAGACTAACTAATGCCGTT+AGG 0.528762 4_4:+10725799 Msa0669160:three_prime_UTR
GACTTCATAGAAGAGATTGA+GGG 0.534785 4_4:+10726632 Msa0669160:three_prime_UTR
AAATCAAAGCCTCTGTTCCC+GGG 0.535432 4_4:+10723206 Msa0669160:CDS
TATTATTGTGAGACATGTAC+TGG 0.535897 4_4:+10726416 Msa0669160:three_prime_UTR
TCAGAGTGAAACATACCATC+AGG 0.541664 4_4:-10725834 None:intergenic
TGAAGTTAGGTCCTCAATGG+TGG 0.544907 4_4:+10721734 Msa0669160:CDS
AAAAGAGAATAAATCATGGA+TGG 0.549712 4_4:+10721687 Msa0669160:CDS
GGGTTTATTGGATCCAAGGT+TGG 0.549914 4_4:+10723299 Msa0669160:CDS
TCATGAAGTTAGGTCCTCAA+TGG 0.559956 4_4:+10721731 Msa0669160:CDS
TCCGAATATGGTAAAATGCA+CGG 0.561454 4_4:-10725735 None:intergenic
GAAAGGCTGTCGTAAACTCT+GGG 0.569575 4_4:+10724906 Msa0669160:CDS
GAGGTGGCGGAGATTGAGAG+AGG 0.572402 4_4:-10721538 None:intergenic
AAAGAGTATGATGGTGTTGG+TGG 0.572562 4_4:+10723278 Msa0669160:CDS
AGCAATCTTCAAACAGGCAA+AGG 0.575995 4_4:+10724835 Msa0669160:CDS
TAAACCAAGGCCAGTAGCTG+AGG 0.602508 4_4:+10724802 Msa0669160:CDS
AATCTTCAAACAGGCAAAGG+TGG 0.603658 4_4:+10724838 Msa0669160:CDS
AATCCAACAAAGTATGCACT+AGG 0.606124 4_4:-10725954 None:intergenic
AGGTGGCGGAGATTGAGAGA+GGG 0.608725 4_4:-10721537 None:intergenic
ATAAAAGAGTATGATGGTGT+TGG 0.611602 4_4:+10723275 Msa0669160:CDS
AAAATACAACCCGGGAACAG+AGG 0.618389 4_4:-10723215 None:intergenic
AAGAGTATGATGGTGTTGGT+GGG 0.620026 4_4:+10723279 Msa0669160:CDS
GAAGTTAGGTCCTCAATGGT+GGG 0.620845 4_4:+10721735 Msa0669160:CDS
GTGGCGGAGATTGAGAGAGG+GGG 0.622580 4_4:-10721535 None:intergenic
AAATGGACTTCATCGACAAG+TGG 0.623224 4_4:-10725904 None:intergenic
GAGCAACGCAACAAACTGGA+AGG 0.623859 4_4:+10721630 Msa0669160:CDS
ACTGAGCCTAAAATTTGTAG+GGG 0.624961 4_4:+10726444 Msa0669160:three_prime_UTR
GTCGATTCAAAGCCCAAAAG+GGG 0.626814 4_4:+10724962 Msa0669160:CDS
GACTACATAAAAGAGTATGA+TGG 0.627233 4_4:+10723269 Msa0669160:CDS
AGTAAAACTTCGAAGAGTTG+CGG 0.629430 4_4:+10725858 Msa0669160:three_prime_UTR
GGTGGCGGAGATTGAGAGAG+GGG 0.634140 4_4:-10721536 None:intergenic
AAAGGCAGATTAATAAACCA+AGG 0.636259 4_4:+10724789 Msa0669160:CDS
AGCGTGGTGGTGGATTCCAT+AGG 0.665297 4_4:-10721486 None:intergenic
ACACGAGCAACCCACCATTG+AGG 0.668787 4_4:-10721745 None:intergenic
AGGAAAAGGAGAGAACCTAA+CGG 0.708524 4_4:-10725814 None:intergenic
GAATATGGTAAAATGCACGG+TGG 0.797672 4_4:-10725732 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTAAACCAAAAAAATATA+AGG - chr4_4:10722974-10722993 None:intergenic 10.0%
!!! ATATAAAGTCTTATAAAATA+AGG - chr4_4:10724628-10724647 None:intergenic 10.0%
!!! TATTTTATAAGACTTTATAT+TGG + chr4_4:10724628-10724647 Msa0669160:intron 10.0%
!!! TTAAAATAATGTTGATTTAA+TGG + chr4_4:10725429-10725448 Msa0669160:intron 10.0%
!!! TAAAATAATGTTGATTTAAT+GGG + chr4_4:10725430-10725449 Msa0669160:intron 10.0%
!!! GTGATTTGTTATTATTATTT+TGG - chr4_4:10721391-10721410 None:intergenic 15.0%
!!! AGTTTTCAATAGTAAAAAAA+TGG + chr4_4:10722040-10722059 Msa0669160:intron 15.0%
!!! TATTTCACCTTATATTTTTT+TGG + chr4_4:10722964-10722983 Msa0669160:intron 15.0%
!! AAAAGATTTAAGAGAAAATA+GGG - chr4_4:10723814-10723833 None:intergenic 15.0%
!! AAAAAGATTTAAGAGAAAAT+AGG - chr4_4:10723815-10723834 None:intergenic 15.0%
!!! TTTTCTCTTAAATCTTTTTA+TGG + chr4_4:10723816-10723835 Msa0669160:intron 15.0%
!! GTTAAATATTTATCTTTGAT+TGG + chr4_4:10723875-10723894 Msa0669160:intron 15.0%
!!! TAAAAGTGACATATTTTTAT+TGG + chr4_4:10724369-10724388 Msa0669160:intron 15.0%
!! ATGCTTGTAATTATTAATTT+CGG + chr4_4:10724675-10724694 Msa0669160:intron 15.0%
!!! TTTAGCTTTTCTTTAAAAAA+TGG - chr4_4:10725924-10725943 None:intergenic 15.0%
!! TGATGTCATAATATAAATTA+TGG + chr4_4:10726027-10726046 Msa0669160:intron 15.0%
!!! TTGTTTTTGTTTTTGTTTTC+AGG + chr4_4:10721866-10721885 Msa0669160:intron 20.0%
!!! GGTTTCAAAATATTGTTTTT+TGG + chr4_4:10721887-10721906 Msa0669160:intron 20.0%
!!! TTTGGTTCTTAATTTTGTTA+TGG + chr4_4:10721905-10721924 Msa0669160:intron 20.0%
!! ACTTCTTATTATGAATGAAT+AGG - chr4_4:10723698-10723717 None:intergenic 20.0%
!!! TAAATCTTTTTATGGATAGT+TGG + chr4_4:10723824-10723843 Msa0669160:intron 20.0%
!!! AAATCTTTTTATGGATAGTT+GGG + chr4_4:10723825-10723844 Msa0669160:intron 20.0%
!! TATCAAATGACAAAAGAAAA+GGG - chr4_4:10724263-10724282 None:intergenic 20.0%
!! ATATCAAATGACAAAAGAAA+AGG - chr4_4:10724264-10724283 None:intergenic 20.0%
!!! TTGAATCTTGAATTATTTTG+AGG + chr4_4:10724289-10724308 Msa0669160:intron 20.0%
!! TTATAAGACTTTATATTGGA+TGG + chr4_4:10724632-10724651 Msa0669160:intron 20.0%
!!! ATTATATCTGGATCATTTTT+AGG + chr4_4:10725076-10725095 Msa0669160:intron 20.0%
!!! TTATATCTGGATCATTTTTA+GGG + chr4_4:10725077-10725096 Msa0669160:intron 20.0%
!! ATTTCAATTAATTCTAGTGA+AGG - chr4_4:10725156-10725175 None:intergenic 20.0%
!! ATCTAATGTGTATCTAAATT+GGG - chr4_4:10725565-10725584 None:intergenic 20.0%
!!! CAAGTATGATAAAAGTTTTA+GGG - chr4_4:10726389-10726408 None:intergenic 20.0%
!!! ACAAGTATGATAAAAGTTTT+AGG - chr4_4:10726390-10726409 None:intergenic 20.0%
!!! CCATGATTTATTCTCTTTTT+TGG - chr4_4:10721686-10721705 None:intergenic 25.0%
! CCAAAAAAGAGAATAAATCA+TGG + chr4_4:10721683-10721702 Msa0669160:CDS 25.0%
! AAAAGAGAATAAATCATGGA+TGG + chr4_4:10721687-10721706 Msa0669160:CDS 25.0%
!!! CTTTAAGGTTTGTGTTTTTA+AGG + chr4_4:10721840-10721859 Msa0669160:intron 25.0%
!!! ATTTTGTTATGGATAAGACA+TGG + chr4_4:10721916-10721935 Msa0669160:intron 25.0%
!!! TCTTTGTTTGAACTAGATTT+TGG + chr4_4:10722278-10722297 Msa0669160:intron 25.0%
!! AACTAGATTTTGGATATATG+CGG + chr4_4:10722288-10722307 Msa0669160:intron 25.0%
! TAAACCTAAGCTTGAATAAT+CGG + chr4_4:10722510-10722529 Msa0669160:intron 25.0%
!! TTCGATCATATTAATCGTTT+TGG + chr4_4:10722707-10722726 Msa0669160:intron 25.0%
!! TAGTCTTAAATTAGTTCAGA+TGG + chr4_4:10722741-10722760 Msa0669160:intron 25.0%
!!! GATTGAAATTTTTCGATTCT+AGG + chr4_4:10722772-10722791 Msa0669160:intron 25.0%
! TTGCTTGATCATTAATTTCA+TGG + chr4_4:10722831-10722850 Msa0669160:intron 25.0%
! ATTGTAAACTATTCACAGTT+TGG - chr4_4:10722913-10722932 None:intergenic 25.0%
! ATGATGTTTCATATGATGTT+TGG + chr4_4:10723088-10723107 Msa0669160:intron 25.0%
!! TCTTTTATGTAGTCATGTAA+TGG - chr4_4:10723263-10723282 None:intergenic 25.0%
!! TTCAATGCATTGCTAATTTT+TGG + chr4_4:10723348-10723367 Msa0669160:intron 25.0%
!!! ACAATTCATTGTTTTGTTAG+AGG - chr4_4:10723446-10723465 None:intergenic 25.0%
! AATTATTATCAGTGTTTGCT+AGG - chr4_4:10723545-10723564 None:intergenic 25.0%
! CAAGTACTCAAATCAAATAA+TGG - chr4_4:10723730-10723749 None:intergenic 25.0%
!! TTTTTACGCTATACTTCATA+TGG + chr4_4:10724030-10724049 Msa0669160:intron 25.0%
! ATATGGTAATCAGTATCTTA+CGG + chr4_4:10724047-10724066 Msa0669160:intron 25.0%
! ATCTCTAGTATGTATCTATT+TGG + chr4_4:10724122-10724141 Msa0669160:intron 25.0%
! ATACAAAGTTGACAAAATAG+TGG - chr4_4:10724233-10724252 None:intergenic 25.0%
! ATCAAATGACAAAAGAAAAG+GGG - chr4_4:10724262-10724281 None:intergenic 25.0%
! CTTTATAGAAGTAGATCATT+CGG - chr4_4:10724497-10724516 None:intergenic 25.0%
! AAAGTATACGTTATACTGAA+CGG + chr4_4:10724513-10724532 Msa0669160:intron 25.0%
!!! TATTGGATGGTGTTTTTTTT+TGG + chr4_4:10724645-10724664 Msa0669160:intron 25.0%
! CAAATGATAAAACAATTGAG+AGG - chr4_4:10724764-10724783 None:intergenic 25.0%
!! GTTTTATCATTTGCAGAAAA+AGG + chr4_4:10724771-10724790 Msa0669160:intron 25.0%
! AATATCACAAAGTGATATCA+TGG - chr4_4:10725243-10725262 None:intergenic 25.0%
!! GATGTTTATGCAGATATTTT+AGG - chr4_4:10725270-10725289 None:intergenic 25.0%
! TCTATGTAGTTAGATTTGAT+TGG + chr4_4:10725288-10725307 Msa0669160:intron 25.0%
! GATCTAATGTGTATCTAAAT+TGG - chr4_4:10725566-10725585 None:intergenic 25.0%
!! ATTGTGCTTTTGTTACTAAA+TGG + chr4_4:10726090-10726109 Msa0669160:intron 25.0%
! ATGACGTTTAAATAGCTAAA+CGG - chr4_4:10726170-10726189 None:intergenic 25.0%
! AGAATAATTAACCGTCTAAT+GGG - chr4_4:10726193-10726212 None:intergenic 25.0%
! AATTTGTATCTAGTGATTCA+TGG + chr4_4:10726358-10726377 Msa0669160:intron 25.0%
!!! GCAACTGTTTTTTAAAACAT+TGG - chr4_4:10726522-10726541 None:intergenic 25.0%
AATAACAAATCACCAGAGAT+TGG + chr4_4:10721398-10721417 Msa0669160:five_prime_UTR 30.0%
AGATAGAAGTAGAAGATGAA+AGG + chr4_4:10721448-10721467 Msa0669160:exon 30.0%
GATAGAAGTAGAAGATGAAA+GGG + chr4_4:10721449-10721468 Msa0669160:exon 30.0%
CTAACTTCATGAGATTATCA+AGG - chr4_4:10721723-10721742 None:intergenic 30.0%
! CTTGATAATCTCATGAAGTT+AGG + chr4_4:10721721-10721740 Msa0669160:CDS 30.0%
!!! TTTTCCTGATATCGACTTTA+AGG + chr4_4:10721825-10721844 Msa0669160:CDS 30.0%
! GTAAAAAAATGGTCTAGCTT+TGG + chr4_4:10722051-10722070 Msa0669160:intron 30.0%
AAAGTGTGAATGTTCTATTC+TGG + chr4_4:10722149-10722168 Msa0669160:intron 30.0%
AGTTAAATGAGCTCTGTTAA+AGG - chr4_4:10722204-10722223 None:intergenic 30.0%
AAGTATGTGTAAATCACTGT+TGG + chr4_4:10722336-10722355 Msa0669160:intron 30.0%
AGTATGTGTAAATCACTGTT+GGG + chr4_4:10722337-10722356 Msa0669160:intron 30.0%
GAGTTGAATGTGAATCATTT+AGG + chr4_4:10722362-10722381 Msa0669160:intron 30.0%
AATGTAAATCACTGTTGAGT+TGG + chr4_4:10722396-10722415 Msa0669160:intron 30.0%
ATGTAAATCACTGTTGAGTT+GGG + chr4_4:10722397-10722416 Msa0669160:intron 30.0%
AGGGTGAAATTTCTACAATA+CGG + chr4_4:10722471-10722490 Msa0669160:intron 30.0%
ATAAAATCCTTTGCGTTCTT+TGG + chr4_4:10722554-10722573 Msa0669160:intron 30.0%
! TATCTGTTTTCTTTTGAACC+AGG + chr4_4:10722589-10722608 Msa0669160:intron 30.0%
! ATCTGTTTTCTTTTGAACCA+GGG + chr4_4:10722590-10722609 Msa0669160:intron 30.0%
! TCATTAATTTCATGGACTGA+AGG + chr4_4:10722839-10722858 Msa0669160:intron 30.0%
!! TTCCATCCAAACATTTTGAT+TGG + chr4_4:10722996-10723015 Msa0669160:intron 30.0%
TAAGCTCCAATCAAAATGTT+TGG - chr4_4:10723005-10723024 None:intergenic 30.0%
GTTGTTTATTTATTGATCCG+TGG + chr4_4:10723110-10723129 Msa0669160:intron 30.0%
! TCTTCAATCTCTTTTTCTCA+TGG - chr4_4:10723169-10723188 None:intergenic 30.0%
! GACTACATAAAAGAGTATGA+TGG + chr4_4:10723269-10723288 Msa0669160:CDS 30.0%
! ATAAAAGAGTATGATGGTGT+TGG + chr4_4:10723275-10723294 Msa0669160:CDS 30.0%
ACACAACTTCAAATATGTTG+CGG - chr4_4:10723485-10723504 None:intergenic 30.0%
! ACATATTTGAAGTTGTGTCT+TGG + chr4_4:10723487-10723506 Msa0669160:intron 30.0%
!! AACTTGATGGCATTGATATA+AGG + chr4_4:10723752-10723771 Msa0669160:intron 30.0%
TAGAAGACAAAACTTGAATC+AGG - chr4_4:10723780-10723799 None:intergenic 30.0%
!! TGATTCAAGTTTTGTCTTCT+AGG + chr4_4:10723779-10723798 Msa0669160:intron 30.0%
ACATCAAATAGAGACATGAT+TGG - chr4_4:10724079-10724098 None:intergenic 30.0%
TTAAACTGAACCCAATTGAT+AGG + chr4_4:10724098-10724117 Msa0669160:intron 30.0%
ACTAGAGATTCCTATCAATT+GGG - chr4_4:10724111-10724130 None:intergenic 30.0%
TACTAGAGATTCCTATCAAT+TGG - chr4_4:10724112-10724131 None:intergenic 30.0%
CGATTCACGATTCAAAAAAT+AGG + chr4_4:10724421-10724440 Msa0669160:intron 30.0%
TGATTATAGTTCATACTGAG+TGG + chr4_4:10724547-10724566 Msa0669160:intron 30.0%
ACATTGAGACATTAGACAAA+AGG - chr4_4:10724712-10724731 None:intergenic 30.0%
AAAGGCAGATTAATAAACCA+AGG + chr4_4:10724789-10724808 Msa0669160:CDS 30.0%
TCCCAATAAAGAGTTAGAAT+CGG + chr4_4:10724931-10724950 Msa0669160:CDS 30.0%
TCCGATTCTAACTCTTTATT+GGG - chr4_4:10724935-10724954 None:intergenic 30.0%
ATCCGATTCTAACTCTTTAT+TGG - chr4_4:10724936-10724955 None:intergenic 30.0%
AAAAAACCTAAACTTGTCAC+AGG + chr4_4:10725040-10725059 Msa0669160:CDS 30.0%
TGATCCAGATATAATTCGAA+CGG - chr4_4:10725071-10725090 None:intergenic 30.0%
TCAATTAATTCTAGTGAAGG+AGG - chr4_4:10725153-10725172 None:intergenic 30.0%
ATATCATGGTGAAATCTGAT+TGG - chr4_4:10725229-10725248 None:intergenic 30.0%
TGTTTATGCGAAACTTAAAC+TGG + chr4_4:10725396-10725415 Msa0669160:intron 30.0%
! TATGTTCTCTTTTCCGAATA+TGG - chr4_4:10725750-10725769 None:intergenic 30.0%
GAACAATTTCACTAACATCT+AGG - chr4_4:10725778-10725797 None:intergenic 30.0%
CAGAATAATTAACCGTCTAA+TGG - chr4_4:10726194-10726213 None:intergenic 30.0%
! CGGTTAATTATTCTGAAGAT+TGG + chr4_4:10726199-10726218 Msa0669160:intron 30.0%
AGATTGTGTACCTTTGAATT+AGG - chr4_4:10726307-10726326 None:intergenic 30.0%
TATTATTGTGAGACATGTAC+TGG + chr4_4:10726416-10726435 Msa0669160:three_prime_UTR 30.0%
TTACTGAGCCTAAAATTTGT+AGG + chr4_4:10726442-10726461 Msa0669160:three_prime_UTR 30.0%
TACTGAGCCTAAAATTTGTA+GGG + chr4_4:10726443-10726462 Msa0669160:three_prime_UTR 30.0%
! ACAAATCCCCTACAAATTTT+AGG - chr4_4:10726453-10726472 None:intergenic 30.0%
CTATGAAGTCAGATGAATAT+TGG - chr4_4:10726622-10726641 None:intergenic 30.0%
! GATTGGAATGTTTGGAACTT+TGG + chr4_4:10721415-10721434 Msa0669160:five_prime_UTR 35.0%
!! TTCTTTTGCTGTGAGGATTT+CGG - chr4_4:10721581-10721600 None:intergenic 35.0%
CAAACCTTAAAGTCGATATC+AGG - chr4_4:10721832-10721851 None:intergenic 35.0%
TATTGCCGAAATTGTTAGGA+CGG + chr4_4:10721977-10721996 Msa0669160:intron 35.0%
GAAAACTTGCACACAAATGA+AGG - chr4_4:10722027-10722046 None:intergenic 35.0%
GAACATTCACACTTTACTTC+TGG - chr4_4:10722144-10722163 None:intergenic 35.0%
! GTGAATGTTCTATTCTGGAA+TGG + chr4_4:10722154-10722173 Msa0669160:intron 35.0%
!! TTCTATTCTGGAATGGAACT+TGG + chr4_4:10722161-10722180 Msa0669160:intron 35.0%
ACTATTTGAGCTCATACACT+TGG + chr4_4:10722221-10722240 Msa0669160:intron 35.0%
! TTTTGGATATATGCGGATGA+AGG + chr4_4:10722295-10722314 Msa0669160:intron 35.0%
TTTGGATATATGCGGATGAA+GGG + chr4_4:10722296-10722315 Msa0669160:intron 35.0%
GATTTACACATACTTTCCGT+CGG - chr4_4:10722331-10722350 None:intergenic 35.0%
ACTCCTAGTTTATGGATAAG+TGG + chr4_4:10722424-10722443 Msa0669160:intron 35.0%
CTCCTAGTTTATGGATAAGT+GGG + chr4_4:10722425-10722444 Msa0669160:intron 35.0%
! TATGCCGATTATTCAAGCTT+AGG - chr4_4:10722517-10722536 None:intergenic 35.0%
AACTGTTAGAACATATACCC+TGG - chr4_4:10722610-10722629 None:intergenic 35.0%
AAACTATTCACAGTTTGGTC+TGG - chr4_4:10722908-10722927 None:intergenic 35.0%
CTCCAATCAAAATGTTTGGA+TGG - chr4_4:10723001-10723020 None:intergenic 35.0%
GAGAAAAAGAGATTGAAGAG+TGG + chr4_4:10723170-10723189 Msa0669160:CDS 35.0%
!! AGGCTTTGATTTTACAGAGA+TGG - chr4_4:10723198-10723217 None:intergenic 35.0%
ATCTCAGAAAAATACAACCC+GGG - chr4_4:10723226-10723245 None:intergenic 35.0%
CATCTCAGAAAAATACAACC+CGG - chr4_4:10723227-10723246 None:intergenic 35.0%
! TATTTGAAGTTGTGTCTTGG+AGG + chr4_4:10723490-10723509 Msa0669160:intron 35.0%
CACACCTTTAATCTAAGTGT+TGG + chr4_4:10723637-10723656 Msa0669160:intron 35.0%
AGCACCAACACTTAGATTAA+AGG - chr4_4:10723644-10723663 None:intergenic 35.0%
TTGAGTACTTGTCAACTTGA+TGG + chr4_4:10723739-10723758 Msa0669160:intron 35.0%
!! ATTTTCCATCTTGTTTCGCT+TGG + chr4_4:10723972-10723991 Msa0669160:intron 35.0%
ATAAACCAAGCGAAACAAGA+TGG - chr4_4:10723980-10723999 None:intergenic 35.0%
AGGATTCATCATAGTGAATC+AGG - chr4_4:10724168-10724187 None:intergenic 35.0%
GTGATTCGATTGAATGAATC+AGG - chr4_4:10724188-10724207 None:intergenic 35.0%
TGGCTGACTACAATAAGTTT+AGG - chr4_4:10724213-10724232 None:intergenic 35.0%
AATGACAAAAGAAAAGGGGT+TGG - chr4_4:10724258-10724277 None:intergenic 35.0%
! TCATTCGGTACAAAGTATCA+TGG - chr4_4:10724482-10724501 None:intergenic 35.0%
ACAATTGAGAGGTTCAACTT+AGG - chr4_4:10724753-10724772 None:intergenic 35.0%
TATGGAAGCAATCTTCAAAC+AGG + chr4_4:10724829-10724848 Msa0669160:CDS 35.0%
AGAAGAAGAAGAAGAGAGAA+AGG + chr4_4:10724889-10724908 Msa0669160:CDS 35.0%
! TGATTTAATGGGTCGATGAT+AGG + chr4_4:10725441-10725460 Msa0669160:intron 35.0%
ATTGACGAGTTCACTCAAAT+CGG + chr4_4:10725503-10725522 Msa0669160:intron 35.0%
TCATTTAACCGTCTTAATGC+AGG + chr4_4:10725709-10725728 Msa0669160:intron 35.0%
! ACCGTGCATTTTACCATATT+CGG + chr4_4:10725734-10725753 Msa0669160:CDS 35.0%
TCCGAATATGGTAAAATGCA+CGG - chr4_4:10725738-10725757 None:intergenic 35.0%
TGAAACATACCATCAGGAAA+AGG - chr4_4:10725831-10725850 None:intergenic 35.0%
AGTAAAACTTCGAAGAGTTG+CGG + chr4_4:10725858-10725877 Msa0669160:three_prime_UTR 35.0%
TTACCTAGTGCATACTTTGT+TGG + chr4_4:10725951-10725970 Msa0669160:intron 35.0%
AATCCAACAAAGTATGCACT+AGG - chr4_4:10725957-10725976 None:intergenic 35.0%
TCTCATTGGGCTTATCTAAA+TGG - chr4_4:10726132-10726151 None:intergenic 35.0%
ATTTAGATAAGCCCAATGAG+AGG + chr4_4:10726131-10726150 Msa0669160:intron 35.0%
TTAAATAGCTAAACGGCTGA+GGG - chr4_4:10726163-10726182 None:intergenic 35.0%
TTTAAATAGCTAAACGGCTG+AGG - chr4_4:10726164-10726183 None:intergenic 35.0%
TTAAACGTCATCCCATTAGA+CGG + chr4_4:10726179-10726198 Msa0669160:intron 35.0%
GTTACCCCTTTCATATTAGT+CGG + chr4_4:10726255-10726274 Msa0669160:intron 35.0%
!! CCTTTGAATTAGGTTGATGA+AGG - chr4_4:10726297-10726316 None:intergenic 35.0%
CCTTCATCAACCTAATTCAA+AGG + chr4_4:10726294-10726313 Msa0669160:intron 35.0%
ACTGAGCCTAAAATTTGTAG+GGG + chr4_4:10726444-10726463 Msa0669160:three_prime_UTR 35.0%
AACAGTTGCAACCAAAAATG+TGG + chr4_4:10726533-10726552 Msa0669160:three_prime_UTR 35.0%
! TAACATTGCAGCCACATTTT+TGG - chr4_4:10726547-10726566 None:intergenic 35.0%
AAAATGTGGCTGCAATGTTA+AGG + chr4_4:10726547-10726566 Msa0669160:three_prime_UTR 35.0%
GATACAAGTGATACAATTGC+AGG - chr4_4:10726585-10726604 None:intergenic 35.0%
TGACTTCATAGAAGAGATTG+AGG + chr4_4:10726631-10726650 Msa0669160:three_prime_UTR 35.0%
GACTTCATAGAAGAGATTGA+GGG + chr4_4:10726632-10726651 Msa0669160:three_prime_UTR 35.0%
TCACCAGAGATTGGAATGTT+TGG + chr4_4:10721407-10721426 Msa0669160:five_prime_UTR 40.0%
GTTCCAAACATTCCAATCTC+TGG - chr4_4:10721413-10721432 None:intergenic 40.0%
!! TCTTTTGCTGTGAGGATTTC+GGG - chr4_4:10721580-10721599 None:intergenic 40.0%
TCATGAAGTTAGGTCCTCAA+TGG + chr4_4:10721731-10721750 Msa0669160:CDS 40.0%
AACAATTTCGGCAATACTGC+CGG - chr4_4:10721973-10721992 None:intergenic 40.0%
GCAGTATTGCCGAAATTGTT+AGG + chr4_4:10721973-10721992 Msa0669160:intron 40.0%
TCCATCCGTCCTAACAATTT+CGG - chr4_4:10721985-10722004 None:intergenic 40.0%
ACACGTACAAAAATGGAAGC+AGG - chr4_4:10722085-10722104 None:intergenic 40.0%
!! TGCTTCCATTTTTGTACGTG+TGG + chr4_4:10722084-10722103 Msa0669160:intron 40.0%
TGGAATGGAACTTGGTTATC+AGG + chr4_4:10722169-10722188 Msa0669160:intron 40.0%
ATACACTTGGTTAGTGTGTC+TGG + chr4_4:10722234-10722253 Msa0669160:intron 40.0%
TGCCCACTTATCCATAAACT+AGG - chr4_4:10722430-10722449 None:intergenic 40.0%
TAAGTGGGCATGTCACTAAT+TGG + chr4_4:10722440-10722459 Msa0669160:intron 40.0%
AAGTGGGCATGTCACTAATT+GGG + chr4_4:10722441-10722460 Msa0669160:intron 40.0%
GAATAATCGGCATAATCGTC+TGG + chr4_4:10722523-10722542 Msa0669160:intron 40.0%
TCAAATCGACTGATGCGTAA+AGG - chr4_4:10722641-10722660 None:intergenic 40.0%
! CTCTTTTTCTCATGGATAGC+TGG - chr4_4:10723161-10723180 None:intergenic 40.0%
AAAATCAAAGCCTCTGTTCC+CGG + chr4_4:10723205-10723224 Msa0669160:CDS 40.0%
! AAAGAGTATGATGGTGTTGG+TGG + chr4_4:10723278-10723297 Msa0669160:CDS 40.0%
!! AAGAGTATGATGGTGTTGGT+GGG + chr4_4:10723279-10723298 Msa0669160:CDS 40.0%
GTTAGAGGACTTGATGAACA+TGG - chr4_4:10723431-10723450 None:intergenic 40.0%
TGTCTGACTCTGACATGTAT+CGG + chr4_4:10723606-10723625 Msa0669160:intron 40.0%
!! AAGTGTTGGTGCTATATAGC+TGG + chr4_4:10723651-10723670 Msa0669160:intron 40.0%
AGTGAATCAGGATTCGAGAT+GGG - chr4_4:10724156-10724175 None:intergenic 40.0%
TAGTGAATCAGGATTCGAGA+TGG - chr4_4:10724157-10724176 None:intergenic 40.0%
AGGTTCAACTTAGGCTTAAC+AGG - chr4_4:10724744-10724763 None:intergenic 40.0%
AGCAATCTTCAAACAGGCAA+AGG + chr4_4:10724835-10724854 Msa0669160:CDS 40.0%
AATCTTCAAACAGGCAAAGG+TGG + chr4_4:10724838-10724857 Msa0669160:CDS 40.0%
!! TTGTCGATTCAAAGCCCAAA+AGG + chr4_4:10724960-10724979 Msa0669160:CDS 40.0%
!! TGTCGATTCAAAGCCCAAAA+GGG + chr4_4:10724961-10724980 Msa0669160:CDS 40.0%
!!! GTTTTTCTAGAGCCCCTTTT+GGG - chr4_4:10724977-10724996 None:intergenic 40.0%
TGTGACTGTTAGTTGGTTAG+AGG - chr4_4:10724999-10725018 None:intergenic 40.0%
CTTCTTCTGTGACTGTTAGT+TGG - chr4_4:10725006-10725025 None:intergenic 40.0%
TCTGCCGTTCGAATTATATC+TGG + chr4_4:10725064-10725083 Msa0669160:intron 40.0%
!!! GGATCATTTTTAGGGTTTGC+AGG + chr4_4:10725085-10725104 Msa0669160:intron 40.0%
!!! AGCTCACCATTTTGGTTTTG+CGG - chr4_4:10725129-10725148 None:intergenic 40.0%
TCATTCACTCATGTGCAAAC+CGG - chr4_4:10725535-10725554 None:intergenic 40.0%
ATCAAATAGACTGCTCCAAC+CGG + chr4_4:10725583-10725602 Msa0669160:intron 40.0%
CAGTGTGATTAGACTTGGAA+AGG - chr4_4:10725642-10725661 None:intergenic 40.0%
TTGTGCAGTGTGATTAGACT+TGG - chr4_4:10725647-10725666 None:intergenic 40.0%
GAATATGGTAAAATGCACGG+TGG - chr4_4:10725735-10725754 None:intergenic 40.0%
! TAACGGCATTAGTTAGTCTC+TGG - chr4_4:10725800-10725819 None:intergenic 40.0%
AGAGACTAACTAATGCCGTT+AGG + chr4_4:10725799-10725818 Msa0669160:three_prime_UTR 40.0%
AGGAAAAGGAGAGAACCTAA+CGG - chr4_4:10725817-10725836 None:intergenic 40.0%
TCAGAGTGAAACATACCATC+AGG - chr4_4:10725837-10725856 None:intergenic 40.0%
! AAATGGACTTCATCGACAAG+TGG - chr4_4:10725907-10725926 None:intergenic 40.0%
TGTTACTAAATGGACCGTGA+TGG + chr4_4:10726100-10726119 Msa0669160:intron 40.0%
GTTACTAAATGGACCGTGAT+GGG + chr4_4:10726101-10726120 Msa0669160:intron 40.0%
TGAGAAAACCTAGAGCTAGA+CGG + chr4_4:10726222-10726241 Msa0669160:intron 40.0%
! AACGCCGACTAATATGAAAG+GGG - chr4_4:10726262-10726281 None:intergenic 40.0%
! CAACGCCGACTAATATGAAA+GGG - chr4_4:10726263-10726282 None:intergenic 40.0%
! ACAACGCCGACTAATATGAA+AGG - chr4_4:10726264-10726283 None:intergenic 40.0%
ATATTAGTCGGCGTTGTCTA+CGG + chr4_4:10726267-10726286 Msa0669160:intron 40.0%
!! TTTTGCTGTGAGGATTTCGG+GGG - chr4_4:10721578-10721597 None:intergenic 45.0%
!! CTTTTGCTGTGAGGATTTCG+GGG - chr4_4:10721579-10721598 None:intergenic 45.0%
TGAAGTTAGGTCCTCAATGG+TGG + chr4_4:10721734-10721753 Msa0669160:CDS 45.0%
GAAGTTAGGTCCTCAATGGT+GGG + chr4_4:10721735-10721754 Msa0669160:CDS 45.0%
TGCTCGTGTTTCTCGTGTTA+AGG + chr4_4:10721759-10721778 Msa0669160:CDS 45.0%
GCTCGTGTTTCTCGTGTTAA+GGG + chr4_4:10721760-10721779 Msa0669160:CDS 45.0%
TGAAGCTCTTGCTCGTTCTT+TGG + chr4_4:10721795-10721814 Msa0669160:CDS 45.0%
! AGTAGTTTGTCCACAAGTCC+TGG + chr4_4:10721942-10721961 Msa0669160:intron 45.0%
AATTGTTAGGACGGATGGAC+CGG + chr4_4:10721986-10722005 Msa0669160:intron 45.0%
TGCACACAAATGAAGGAGCT+GGG - chr4_4:10722020-10722039 None:intergenic 45.0%
TTGCACACAAATGAAGGAGC+TGG - chr4_4:10722021-10722040 None:intergenic 45.0%
GGAGACCACACGTACAAAAA+TGG - chr4_4:10722092-10722111 None:intergenic 45.0%
CAGTTCTCAAGGGAATGAGT+CGG + chr4_4:10722111-10722130 Msa0669160:intron 45.0%
!!! TGAAGGGTTTTTGAGACCGA+CGG + chr4_4:10722312-10722331 Msa0669160:intron 45.0%
TGGGCATGACTCCTAGTTTA+TGG + chr4_4:10722416-10722435 Msa0669160:intron 45.0%
AGTGGGCATGTCACTAATTG+GGG + chr4_4:10722442-10722461 Msa0669160:intron 45.0%
TCACTAATTGGGGTGAGCAA+GGG + chr4_4:10722452-10722471 Msa0669160:intron 45.0%
AACGCAACCAAAGAACGCAA+AGG - chr4_4:10722564-10722583 None:intergenic 45.0%
TTCGCTCATATAGTTCGTGC+TGG + chr4_4:10722865-10722884 Msa0669160:intron 45.0%
TCTTATCTCCTCAGCTGGTA+GGG - chr4_4:10723038-10723057 None:intergenic 45.0%
TTCTTATCTCCTCAGCTGGT+AGG - chr4_4:10723039-10723058 None:intergenic 45.0%
! TATTGATCCGTGGTAGCGTT+TGG + chr4_4:10723120-10723139 Msa0669160:intron 45.0%
CCTAAAACCAAACGCTACCA+CGG - chr4_4:10723130-10723149 None:intergenic 45.0%
AAATCAAAGCCTCTGTTCCC+GGG + chr4_4:10723206-10723225 Msa0669160:CDS 45.0%
AAAATACAACCCGGGAACAG+AGG - chr4_4:10723218-10723237 None:intergenic 45.0%
!! GATGGTGTTGGTGGGTTTAT+TGG + chr4_4:10723287-10723306 Msa0669160:CDS 45.0%
!! TGGTGGGTTTATTGGATCCA+AGG + chr4_4:10723295-10723314 Msa0669160:CDS 45.0%
GGGTTTATTGGATCCAAGGT+TGG + chr4_4:10723299-10723318 Msa0669160:CDS 45.0%
TGCTTACGTGTTTCCAACCT+TGG - chr4_4:10723315-10723334 None:intergenic 45.0%
! TACATGTGTAAGTGTCGTGC+CGG + chr4_4:10723583-10723602 Msa0669160:intron 45.0%
TACATGTCAGAGTCAGACAC+CGG - chr4_4:10723605-10723624 None:intergenic 45.0%
TCCATATCATCCTCAGCTAC+TGG - chr4_4:10724815-10724834 None:intergenic 45.0%
AGAAAGGCTGTCGTAAACTC+TGG + chr4_4:10724905-10724924 Msa0669160:CDS 45.0%
GAAAGGCTGTCGTAAACTCT+GGG + chr4_4:10724906-10724925 Msa0669160:CDS 45.0%
! GTCGATTCAAAGCCCAAAAG+GGG + chr4_4:10724962-10724981 Msa0669160:CDS 45.0%
!!! GGTTTTTCTAGAGCCCCTTT+TGG - chr4_4:10724978-10724997 None:intergenic 45.0%
GCAGAACCTGTGACAAGTTT+AGG - chr4_4:10725049-10725068 None:intergenic 45.0%
GCTGAACCGCAAAACCAAAA+TGG + chr4_4:10725120-10725139 Msa0669160:intron 45.0%
! AAGGAGGAAGCTCACCATTT+TGG - chr4_4:10725137-10725156 None:intergenic 45.0%
CTGATCGAGAACCGAACTTA+TGG - chr4_4:10725609-10725628 None:intergenic 45.0%
! AGGTTCTCTCCTTTTCCTGA+TGG + chr4_4:10725819-10725838 Msa0669160:three_prime_UTR 45.0%
CTAAATGGTCCAACCCATCA+CGG - chr4_4:10726117-10726136 None:intergenic 45.0%
!! ATTATTTAATTAATCAATTA+TGG + chr4_4:10725978-10725997 Msa0669160:intron 5.0%
GGATGCTAACGCTTCACCTA+TGG + chr4_4:10721470-10721489 Msa0669160:CDS 50.0%
!! GTCTGCGTTCTTTTGCTGTG+AGG - chr4_4:10721588-10721607 None:intergenic 50.0%
GAGAGAGCAACGCAACAAAC+TGG + chr4_4:10721626-10721645 Msa0669160:CDS 50.0%
GAGCAACGCAACAAACTGGA+AGG + chr4_4:10721630-10721649 Msa0669160:CDS 50.0%
GCCGAAATTGTTAGGACGGA+TGG + chr4_4:10721981-10722000 Msa0669160:intron 50.0%
GTGTGGTCTCCAGTTCTCAA+GGG + chr4_4:10722101-10722120 Msa0669160:intron 50.0%
CGACTCATTCCCTTGAGAAC+TGG - chr4_4:10722113-10722132 None:intergenic 50.0%
GTCACTAATTGGGGTGAGCA+AGG + chr4_4:10722451-10722470 Msa0669160:intron 50.0%
CGCTTTCTTATCTCCTCAGC+TGG - chr4_4:10723043-10723062 None:intergenic 50.0%
!!! CCGTGGTAGCGTTTGGTTTT+AGG + chr4_4:10723127-10723146 Msa0669160:intron 50.0%
TAAACCAAGGCCAGTAGCTG+AGG + chr4_4:10724802-10724821 Msa0669160:CDS 50.0%
GCCAGTAGCTGAGGATGATA+TGG + chr4_4:10724811-10724830 Msa0669160:CDS 50.0%
!! TCACTCAAATCGGTTCGCAC+CGG + chr4_4:10725513-10725532 Msa0669160:intron 50.0%
TCGAGAACCGAACTTATGGC+CGG - chr4_4:10725605-10725624 None:intergenic 50.0%
!! CTAAATGGACCGTGATGGGT+TGG + chr4_4:10726105-10726124 Msa0669160:intron 50.0%
ACCTAGAGCTAGACGGAATG+AGG + chr4_4:10726229-10726248 Msa0669160:intron 50.0%
CCTAGAGCTAGACGGAATGA+GGG + chr4_4:10726230-10726249 Msa0669160:intron 50.0%
!! AGCGTGGTGGTGGATTCCAT+AGG - chr4_4:10721489-10721508 None:intergenic 55.0%
GATTGAGAGAGGGGGTTTGG+TGG - chr4_4:10721530-10721549 None:intergenic 55.0%
GGAGATTGAGAGAGGGGGTT+TGG - chr4_4:10721533-10721552 None:intergenic 55.0%
!! AGGTGGCGGAGATTGAGAGA+GGG - chr4_4:10721540-10721559 None:intergenic 55.0%
ACACGAGCAACCCACCATTG+AGG - chr4_4:10721748-10721767 None:intergenic 55.0%
TCCACAAGTCCTGGCTCAAC+CGG + chr4_4:10721951-10721970 Msa0669160:intron 55.0%
AAGGAGCTGGGTTCGAACTC+CGG - chr4_4:10722008-10722027 None:intergenic 55.0%
CGTGTGGTCTCCAGTTCTCA+AGG + chr4_4:10722100-10722119 Msa0669160:intron 55.0%
GCTAACAACCCTACCAGCTG+AGG + chr4_4:10723027-10723046 Msa0669160:intron 55.0%
! TCATCCTCAGCTACTGGCCT+TGG - chr4_4:10724809-10724828 None:intergenic 55.0%
GCTCCAACCGGCCATAAGTT+CGG + chr4_4:10725595-10725614 Msa0669160:intron 55.0%
GAACCGAACTTATGGCCGGT+TGG - chr4_4:10725601-10725620 None:intergenic 55.0%
CGGTTCTCGATCAGACTCGT+CGG + chr4_4:10725615-10725634 Msa0669160:intron 55.0%
CACGGTGGCCTGCATTAAGA+CGG - chr4_4:10725720-10725739 None:intergenic 55.0%
TAGCTAAACGGCTGAGGGCA+GGG - chr4_4:10726158-10726177 None:intergenic 55.0%
ATAGCTAAACGGCTGAGGGC+AGG - chr4_4:10726159-10726178 None:intergenic 55.0%
!! CCCTCATTCCGTCTAGCTCT+AGG - chr4_4:10726233-10726252 None:intergenic 55.0%
!! AGGGGGTTTGGTGGAGAGAG+GGG - chr4_4:10721521-10721540 None:intergenic 60.0%
!! GAGGGGGTTTGGTGGAGAGA+GGG - chr4_4:10721522-10721541 None:intergenic 60.0%
!! AGAGGGGGTTTGGTGGAGAG+AGG - chr4_4:10721523-10721542 None:intergenic 60.0%
! GTGGCGGAGATTGAGAGAGG+GGG - chr4_4:10721538-10721557 None:intergenic 60.0%
!! GGTGGCGGAGATTGAGAGAG+GGG - chr4_4:10721539-10721558 None:intergenic 60.0%
!! GAGGTGGCGGAGATTGAGAG+AGG - chr4_4:10721541-10721560 None:intergenic 60.0%
TGTGAGGATTTCGGGGGAGG+TGG - chr4_4:10721572-10721591 None:intergenic 60.0%
TGCTGTGAGGATTTCGGGGG+AGG - chr4_4:10721575-10721594 None:intergenic 60.0%
! GCAATACTGCCGGTTGAGCC+AGG - chr4_4:10721963-10721982 None:intergenic 60.0%
GAGGGCAGGGACCTCTCATT+GGG - chr4_4:10726145-10726164 None:intergenic 60.0%
TGAGGGCAGGGACCTCTCAT+TGG - chr4_4:10726146-10726165 None:intergenic 60.0%
! GGGGTGTAGAAGCGTGGTGG+TGG - chr4_4:10721499-10721518 None:intergenic 65.0%
! AGAGGGGGGGTGTAGAAGCG+TGG - chr4_4:10721505-10721524 None:intergenic 65.0%
!! GGGTTTGGTGGAGAGAGGGG+GGG - chr4_4:10721518-10721537 None:intergenic 65.0%
!! GGGGTTTGGTGGAGAGAGGG+GGG - chr4_4:10721519-10721538 None:intergenic 65.0%
!! GGGGGTTTGGTGGAGAGAGG+GGG - chr4_4:10721520-10721539 None:intergenic 65.0%
TTCGGGGGAGGTGGAGGTGA+CGG - chr4_4:10721563-10721582 None:intergenic 65.0%
GAGGATTTCGGGGGAGGTGG+AGG - chr4_4:10721569-10721588 None:intergenic 65.0%
GCCGGTTGAGCCAGGACTTG+TGG - chr4_4:10721955-10721974 None:intergenic 65.0%
! GGGGGGGTGTAGAAGCGTGG+TGG - chr4_4:10721502-10721521 None:intergenic 70.0%
!! GGTGGAGGTGACGGAGGTGG+CGG - chr4_4:10721554-10721573 None:intergenic 70.0%
!! GGAGGTGGAGGTGACGGAGG+TGG - chr4_4:10721557-10721576 None:intergenic 70.0%
! GGGGGAGGTGGAGGTGACGG+AGG - chr4_4:10721560-10721579 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 10721371 10726677 10721371 ID=Msa0669160;Name=Msa0669160
chr4_4 mRNA 10721371 10726677 10721371 ID=Msa0669160-mRNA-1;Parent=Msa0669160;Name=Msa0669160-mRNA-1;_AED=0.10;_eAED=0.10;_QI=92|0.75|0.8|1|0.75|0.6|5|451|297
chr4_4 exon 10721371 10721846 10721371 ID=Msa0669160-mRNA-1:exon:3200;Parent=Msa0669160-mRNA-1
chr4_4 exon 10723149 10723327 10723149 ID=Msa0669160-mRNA-1:exon:3201;Parent=Msa0669160-mRNA-1
chr4_4 exon 10724787 10725061 10724787 ID=Msa0669160-mRNA-1:exon:3202;Parent=Msa0669160-mRNA-1
chr4_4 exon 10725731 10725968 10725731 ID=Msa0669160-mRNA-1:exon:3203;Parent=Msa0669160-mRNA-1
chr4_4 exon 10726409 10726677 10726409 ID=Msa0669160-mRNA-1:exon:3204;Parent=Msa0669160-mRNA-1
chr4_4 five_prime_UTR 10721371 10721462 10721371 ID=Msa0669160-mRNA-1:five_prime_utr;Parent=Msa0669160-mRNA-1
chr4_4 CDS 10721463 10721846 10721463 ID=Msa0669160-mRNA-1:cds;Parent=Msa0669160-mRNA-1
chr4_4 CDS 10723149 10723327 10723149 ID=Msa0669160-mRNA-1:cds;Parent=Msa0669160-mRNA-1
chr4_4 CDS 10724787 10725061 10724787 ID=Msa0669160-mRNA-1:cds;Parent=Msa0669160-mRNA-1
chr4_4 CDS 10725731 10725786 10725731 ID=Msa0669160-mRNA-1:cds;Parent=Msa0669160-mRNA-1
chr4_4 three_prime_UTR 10725787 10725968 10725787 ID=Msa0669160-mRNA-1:three_prime_utr;Parent=Msa0669160-mRNA-1
chr4_4 three_prime_UTR 10726409 10726677 10726409 ID=Msa0669160-mRNA-1:three_prime_utr;Parent=Msa0669160-mRNA-1
Gene Sequence

>Msa0669160

ATGAAAGGGATGCTAACGCTTCACCTATGGAATCCACCACCACGCTTCTACACCCCCCCTCTCTCCACCAAACCCCCTCTCTCAATCTCCGCCACCTCCGTCACCTCCACCTCCCCCGAAATCCTCACAGCAAAAGAACGCAGACGCTTACGCAACGAGCGAAGAGAGAGCAACGCAACAAACTGGAAGGAAGAAGTTGAAAATAAACTCATTCAGAAAACCAAAAAAGAGAATAAATCATGGATGGATGAACTCAACCTTGATAATCTCATGAAGTTAGGTCCTCAATGGTGGGTTGCTCGTGTTTCTCGTGTTAAGGGTCAGTATACTGCTGAAGCTCTTGCTCGTTCTTTGGCTAAGTTTTTTCCTGATATCGACTTTAAGGTATATGCTCCAGCTATCCATGAGAAAAAGAGATTGAAGAGTGGTTCCATCTCTGTAAAATCAAAGCCTCTGTTCCCGGGTTGTATTTTTCTGAGATGCGAACTGAACAAACCATTACATGACTACATAAAAGAGTATGATGGTGTTGGTGGGTTTATTGGATCCAAGGTTGGAAACACAAAAAGGCAGATTAATAAACCAAGGCCAGTAGCTGAGGATGATATGGAAGCAATCTTCAAACAGGCAAAGGTGGAGCAAGAAAATGCTGACAAAGCATTTGAAGAAGAAGAAGAAGAGAGAAAGGCTGTCGTAAACTCTGGGAATCCCAATAAAGAGTTAGAATCGGATGCTATTGTCGATTCAAAGCCCAAAAGGGGCTCTAGAAAAACCTCTAACCAACTAACAGTCACAGAAGAAGCTTCATCAGCTAAAAAAAAACCTAAACTTGTCACAGGCCACCGTGCATTTTACCATATTCGGAAAAGAGAACATAGTAGACCTAGATGTTAG

Protein sequence

>Msa0669160

MKGMLTLHLWNPPPRFYTPPLSTKPPLSISATSVTSTSPEILTAKERRRLRNERRESNATNWKEEVENKLIQKTKKENKSWMDELNLDNLMKLGPQWWVARVSRVKGQYTAEALARSLAKFFPDIDFKVYAPAIHEKKRLKSGSISVKSKPLFPGCIFLRCELNKPLHDYIKEYDGVGGFIGSKVGNTKRQINKPRPVAEDDMEAIFKQAKVEQENADKAFEEEEEERKAVVNSGNPNKELESDAIVDSKPKRGSRKTSNQLTVTEEASSAKKKPKLVTGHRAFYHIRKREHSRPRC*