AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0674680


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0674680 MtrunA17_Chr4g0017941 98.403 313 3 2 2 313 1 312 0.0 629
Msa0674680 MtrunA17_Chr1g0178361 61.409 298 101 4 19 313 19 305 1.21e-118 343
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0674680 AT5G61670.2 84.532 278 36 1 36 313 37 307 8.43e-172 478
Msa0674680 AT5G61670.1 84.532 278 36 1 36 313 37 307 8.43e-172 478
Msa0674680 AT5G06130.2 63.309 278 97 2 41 313 38 315 5.06e-124 358
Msa0674680 AT5G06130.1 67.532 231 74 1 84 313 1 231 1.92e-114 330

Find 91 sgRNAs with CRISPR-Local

Find 318 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAAAATCTTGAACAGTTTC+AGG 0.138888 4_4:-22451860 None:intergenic
GAGAATGGACACAAGAAATT+AGG 0.160765 4_4:+22456162 Msa0674680:three_prime_UTR
GGAATGAATGATGGGAAATT+AGG 0.261986 4_4:-22453336 None:intergenic
TATCCATCTCTCTGGGAATA+TGG 0.267448 4_4:-22456032 None:intergenic
TGAAATTGGATCGAAAATTT+AGG 0.272812 4_4:-22451492 None:intergenic
CATTCCATTCTTGCCTCCTT+TGG 0.293420 4_4:+22453353 Msa0674680:CDS
GATGGAACTTCAAGAAATTC+AGG 0.311738 4_4:+22451886 Msa0674680:CDS
ACAAAACAGGTTTAAATGTA+TGG 0.319853 4_4:+22456202 Msa0674680:three_prime_UTR
ATGTTTCTGTTGTGGAATAA+TGG 0.331491 4_4:+22455936 Msa0674680:three_prime_UTR
TGGTGTAATCTCTGCATTAA+TGG 0.340651 4_4:+22454620 Msa0674680:CDS
TAAAGGAAACCATTCTGTTC+CGG 0.343976 4_4:-22456088 None:intergenic
ATTTAGATGAATGAATCTTT+TGG 0.346573 4_4:-22451613 None:intergenic
AAGAAATTCAGGATAATATT+CGG 0.347874 4_4:+22451897 Msa0674680:CDS
TTCGCTTGCCATAGCCATTC+CGG 0.349664 4_4:-22455820 None:intergenic
CCTATTGTGGCATCATTCTC+TGG 0.350969 4_4:+22454588 Msa0674680:CDS
AGAATGGACACAAGAAATTA+GGG 0.372630 4_4:+22456163 Msa0674680:three_prime_UTR
ATTTAGGTAGTTGTTGTTGA+TGG 0.377693 4_4:-22451476 None:intergenic
AAAGAAGATGATGTTGTGTT+TGG 0.379275 4_4:+22451548 Msa0674680:exon
AAAGGAAACCATTCTGTTCC+GGG 0.388543 4_4:-22456087 None:intergenic
GAGAATGGAGGATGTGAAAA+TGG 0.405969 4_4:-22451446 None:intergenic
TGTTCAAATTGCTCCGGATC+TGG 0.412046 4_4:+22455072 Msa0674680:CDS
CGCAGGTTCTGTATTATAGA+AGG 0.413449 4_4:+22451836 Msa0674680:intron
TGAAAATGGACTGCACAAAT+TGG 0.414056 4_4:-22451432 None:intergenic
CTTACCAAAGGAGGCAAGAA+TGG 0.419900 4_4:-22453357 None:intergenic
ATGTTGTGTTTGGGTGTAGT+TGG 0.422331 4_4:+22451558 Msa0674680:CDS
AGGTATCTTATCCATCTCTC+TGG 0.430753 4_4:-22456040 None:intergenic
CCAGAGAATGATGCCACAAT+AGG 0.441935 4_4:-22454588 None:intergenic
TCATTCTCTGGTGGAGCTGT+TGG 0.444757 4_4:+22454600 Msa0674680:CDS
GAGATAAAGATCGAAAGATC+TGG 0.452427 4_4:+22456003 Msa0674680:three_prime_UTR
TGCAAATACTGTCTTGGTAC+TGG 0.456169 4_4:+22454684 Msa0674680:CDS
AGGCTGATCTCCACCATTGA+AGG 0.461185 4_4:-22455025 None:intergenic
CTGGAGCTTAAGCTTGGAAT+AGG 0.466047 4_4:+22454266 Msa0674680:CDS
ATGTCCAACCTTGCCAGATC+CGG 0.468622 4_4:-22455085 None:intergenic
TTGTGTTTGGGTGTAGTTGG+TGG 0.471210 4_4:+22451561 Msa0674680:CDS
GGCAAGAATGGAATGAATGA+TGG 0.471565 4_4:-22453345 None:intergenic
GGCAATTTGAAATTGTATGA+TGG 0.472443 4_4:+22455904 Msa0674680:three_prime_UTR
TCTCAGCTGGAGCTTAAGCT+TGG 0.484713 4_4:+22454260 Msa0674680:intron
AAGAAGATGATGTTGTGTTT+GGG 0.485406 4_4:+22451549 Msa0674680:exon
GATAAACAATGTGAAACAAC+AGG 0.490131 4_4:+22454650 Msa0674680:CDS
AGGAGGATACCGGTTCAATC+AGG 0.490296 4_4:-22455005 None:intergenic
TGCAGACTTCAGCAAACCTC+CGG 0.495333 4_4:+22453470 Msa0674680:intron
GTTGATGGCAAGTTTGAGAA+TGG 0.500292 4_4:-22451461 None:intergenic
CATAGTAATATGCAAAAGAA+AGG 0.500735 4_4:+22455981 Msa0674680:three_prime_UTR
GGAGCAATTTGAACATCTCT+CGG 0.515917 4_4:-22455064 None:intergenic
TGTGGTATATGTTTCTGTTG+TGG 0.520157 4_4:+22455928 Msa0674680:three_prime_UTR
AAAAGATGCAAATACTGTCT+TGG 0.520613 4_4:+22454678 Msa0674680:CDS
ATATTAAACATCTAATCAAA+AGG 0.525443 4_4:-22455861 None:intergenic
TTCTTATAGATATTGTAAGT+AGG 0.529570 4_4:+22455883 Msa0674680:three_prime_UTR
CAATAAGAGGTGGCGTGTCA+TGG 0.530836 4_4:+22451653 Msa0674680:CDS
GCAATTTGAAATTGTATGAT+GGG 0.533710 4_4:+22455905 Msa0674680:three_prime_UTR
TCTTTGCACCGGAATGGCTA+TGG 0.534453 4_4:+22455812 Msa0674680:CDS
TGTGTTTGGGTGTAGTTGGT+GGG 0.535913 4_4:+22451562 Msa0674680:CDS
CCACCATTGAAGGAGGATAC+CGG 0.540857 4_4:-22455015 None:intergenic
AGCACTTGTCCTGATTGAAC+CGG 0.540917 4_4:+22454996 Msa0674680:CDS
GAACCGGTATCCTCCTTCAA+TGG 0.546734 4_4:+22455012 Msa0674680:CDS
AACAGGTTGCATAATACTGC+CGG 0.551192 4_4:-22453489 None:intergenic
GAGAGATGTTCAAATTGCTC+CGG 0.560664 4_4:+22455066 Msa0674680:CDS
AACATGTCTTTGCACCGGAA+TGG 0.564128 4_4:+22455806 Msa0674680:CDS
GCAAGAATGGAATGAATGAT+GGG 0.568641 4_4:-22453344 None:intergenic
TGCATCTGCCTATGCAGTTG+AGG 0.569061 4_4:+22454321 Msa0674680:CDS
TATCCATATTCCCAGAGAGA+TGG 0.569523 4_4:+22456029 Msa0674680:three_prime_UTR
AAATTGCTCCGGATCTGGCA+AGG 0.573161 4_4:+22455077 Msa0674680:CDS
GGTATCTTATCCATCTCTCT+GGG 0.574686 4_4:-22456039 None:intergenic
TAGTCAGGTTGATCCTATTG+TGG 0.580018 4_4:+22454575 Msa0674680:intron
TAATCAAAAGGATCAATTCG+CGG 0.580042 4_4:-22455849 None:intergenic
TTGAAATTGTATGATGGGTG+TGG 0.585204 4_4:+22455910 Msa0674680:three_prime_UTR
ATTGTGGCATCATTCTCTGG+TGG 0.587254 4_4:+22454591 Msa0674680:CDS
AATGGACTGCACAAATTGGT+GGG 0.587469 4_4:-22451428 None:intergenic
GGATGCTACCTCAACTGCAT+AGG 0.590597 4_4:-22454329 None:intergenic
TGATACCACCCGGAACAGAA+TGG 0.591352 4_4:+22456079 Msa0674680:three_prime_UTR
ATTCCGGTGCAAAGACATGT+TGG 0.592847 4_4:-22455804 None:intergenic
AGGATAATATTCGGAGTCGA+AGG 0.596991 4_4:+22451906 Msa0674680:CDS
CCGGTATCCTCCTTCAATGG+TGG 0.599228 4_4:+22455015 Msa0674680:CDS
TGTCCAACATGTCTTTGCAC+CGG 0.600830 4_4:+22455801 Msa0674680:CDS
TACATGAAACTTACCAAAGG+AGG 0.601236 4_4:-22453366 None:intergenic
TAAATCTTACACTCGGAGCA+AGG 0.601691 4_4:-22453549 None:intergenic
GAGCTTAAGCTTGGAATAGG+TGG 0.603781 4_4:+22454269 Msa0674680:CDS
GTTTAGTTGAAGACATGTTG+TGG 0.621480 4_4:-22451586 None:intergenic
CTGATCTCCACCATTGAAGG+AGG 0.622262 4_4:-22455022 None:intergenic
AAATGGACTGCACAAATTGG+TGG 0.626713 4_4:-22451429 None:intergenic
TGTTCCGGGTGGTATCAAGA+TGG 0.627932 4_4:-22456073 None:intergenic
AAAACAGTTTCAATAAGAGG+TGG 0.630936 4_4:+22451643 Msa0674680:CDS
TATCAATGGAATCAAAAGTG+AGG 0.638280 4_4:+22451318 None:intergenic
AGTTCCATCTTGATACCACC+CGG 0.651553 4_4:+22456069 Msa0674680:three_prime_UTR
TGTGCTCGATGTTCAAACAC+GGG 0.651986 4_4:+22454973 Msa0674680:CDS
ATGTGCTCGATGTTCAAACA+CGG 0.661742 4_4:+22454972 Msa0674680:CDS
ATCAAGATGGAACTGAGTCG+AGG 0.668471 4_4:-22456060 None:intergenic
GATGGCAAGTTTGAGAATGG+AGG 0.671797 4_4:-22451458 None:intergenic
AGGTTGCATAATACTGCCGG+AGG 0.679756 4_4:-22453486 None:intergenic
ATGGACTGCACAAATTGGTG+GGG 0.694345 4_4:-22451427 None:intergenic
GGAAACCATTCTGTTCCGGG+TGG 0.736398 4_4:-22456084 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATGAATTTAATATTGAA+TGG + chr4_4:22452334-22452353 Msa0674680:intron 10.0%
!!! TGATAATATTTTTATTGATA+AGG + chr4_4:22454072-22454091 Msa0674680:intron 10.0%
!! ATAAAAAACTATGAAAAAAA+TGG - chr4_4:22455531-22455550 None:intergenic 10.0%
!!! AAAAAACTCATTTTTAAAAC+AGG - chr4_4:22451803-22451822 None:intergenic 15.0%
!!! GAATAAGATTTTTTTACATA+TGG + chr4_4:22451928-22451947 Msa0674680:CDS 15.0%
!! AAAATGTTAATTAATCAAGT+TGG + chr4_4:22452216-22452235 Msa0674680:intron 15.0%
!! TAAAAAAATATTCAAGATGA+AGG + chr4_4:22452378-22452397 Msa0674680:intron 15.0%
!! AAAAAAATATTCAAGATGAA+GGG + chr4_4:22452379-22452398 Msa0674680:intron 15.0%
!! TGATTATATACACAATTATA+CGG - chr4_4:22452876-22452895 None:intergenic 15.0%
!!! ATTTATACATTTTACTCTAT+GGG + chr4_4:22453193-22453212 Msa0674680:intron 15.0%
!! AGTATTACTTATCTATATTA+TGG - chr4_4:22455168-22455187 None:intergenic 15.0%
!! TGAACTTTAAATTAAGTTAA+AGG - chr4_4:22455239-22455258 None:intergenic 15.0%
!! AGAAATGAATAAAAGAATTA+TGG + chr4_4:22455427-22455446 Msa0674680:intron 15.0%
!! AATTATGGTTTACAATTTAA+TGG + chr4_4:22455442-22455461 Msa0674680:intron 15.0%
!! ATTATGGTTTACAATTTAAT+GGG + chr4_4:22455443-22455462 Msa0674680:intron 15.0%
!! ATATTAAACATCTAATCAAA+AGG - chr4_4:22455864-22455883 None:intergenic 15.0%
!! CATTAAATTCTCAAAAATAA+AGG - chr4_4:22456108-22456127 None:intergenic 15.0%
!!! TTATTTTTGAGAATTTAATG+TGG + chr4_4:22456108-22456127 Msa0674680:three_prime_UTR 15.0%
!!! TAGATATACAGTATTGTTTT+TGG - chr4_4:22451376-22451395 None:intergenic 20.0%
!!! TCAACTTTAAGATTGAAAAA+AGG - chr4_4:22451519-22451538 None:intergenic 20.0%
!!! ATTTAGATGAATGAATCTTT+TGG - chr4_4:22451616-22451635 None:intergenic 20.0%
!! AAGAAATTCAGGATAATATT+CGG + chr4_4:22451897-22451916 Msa0674680:CDS 20.0%
!! ATTTAATATTGAATGGATGA+TGG + chr4_4:22452341-22452360 Msa0674680:intron 20.0%
!!! CAGTTTGATTTTATTACTTA+TGG + chr4_4:22453027-22453046 Msa0674680:intron 20.0%
!! ATGTATACATAAAATTGAGA+TGG + chr4_4:22453061-22453080 Msa0674680:intron 20.0%
!!! TAAAATTGAGATGGATTTTT+TGG + chr4_4:22453070-22453089 Msa0674680:intron 20.0%
!! CATAGAGTAAAATGTATAAA+TGG - chr4_4:22453194-22453213 None:intergenic 20.0%
!!! CATTTATACATTTTACTCTA+TGG + chr4_4:22453192-22453211 Msa0674680:intron 20.0%
!! TAATGAAGTAGAATATGAAA+TGG - chr4_4:22453641-22453660 None:intergenic 20.0%
!! TTCATATTCTACTTCATTAA+TGG + chr4_4:22453642-22453661 Msa0674680:intron 20.0%
!! TACAATATAGATTATTACGA+CGG - chr4_4:22453761-22453780 None:intergenic 20.0%
!!! TATTTTTATTGATAAGGCTT+AGG + chr4_4:22454078-22454097 Msa0674680:intron 20.0%
!! CAACATAATTTCGTTATTAT+TGG - chr4_4:22454548-22454567 None:intergenic 20.0%
!! CAATAATAACGAAATTATGT+TGG + chr4_4:22454546-22454565 Msa0674680:intron 20.0%
!!! TGACATTTCTATTATACTTT+TGG + chr4_4:22454931-22454950 Msa0674680:intron 20.0%
!! ATTACTTATCTATATTATGG+CGG - chr4_4:22455165-22455184 None:intergenic 20.0%
!!! ATTTTCGTTTTGAAAGATAA+AGG - chr4_4:22455296-22455315 None:intergenic 20.0%
!! TTCTTATAGATATTGTAAGT+AGG + chr4_4:22455883-22455902 Msa0674680:three_prime_UTR 20.0%
!!! TGTTTTGTAAAATAGTAATC+AGG - chr4_4:22456190-22456209 None:intergenic 20.0%
!!! TGATTACTATTTTACAAAAC+AGG + chr4_4:22456189-22456208 Msa0674680:three_prime_UTR 20.0%
!!! TACAGTATTGTTTTTGGAAA+GGG - chr4_4:22451370-22451389 None:intergenic 25.0%
!!! ATACAGTATTGTTTTTGGAA+AGG - chr4_4:22451371-22451390 None:intergenic 25.0%
! TGAAATTGGATCGAAAATTT+AGG - chr4_4:22451495-22451514 None:intergenic 25.0%
! GATTGAAAAAAGGTTGAAAT+TGG - chr4_4:22451509-22451528 None:intergenic 25.0%
! AGAAAAACAGTTTCAATAAG+AGG + chr4_4:22451640-22451659 Msa0674680:CDS 25.0%
! GTGTATTTCATATAAAAAGG+AGG - chr4_4:22451778-22451797 None:intergenic 25.0%
! GAGGTGTATTTCATATAAAA+AGG - chr4_4:22451781-22451800 None:intergenic 25.0%
!!! AAACTCATTTTTAAAACAGG+AGG - chr4_4:22451800-22451819 None:intergenic 25.0%
!!! GATTTTTTTACATATGGAAG+AGG + chr4_4:22451934-22451953 Msa0674680:CDS 25.0%
!! TTGCAATCACTAACATATTT+TGG - chr4_4:22452198-22452217 None:intergenic 25.0%
! CATCATTATTGTTCTTTCAT+CGG - chr4_4:22452244-22452263 None:intergenic 25.0%
! CTAAAGATCTCTACTATATA+AGG - chr4_4:22452660-22452679 None:intergenic 25.0%
! AATTGTGTATATAATCACAC+TGG + chr4_4:22452879-22452898 Msa0674680:intron 25.0%
!! TGGTAATTTGAATTTTCAAC+AGG - chr4_4:22453174-22453193 None:intergenic 25.0%
!!! GTATACTCTTGTTATTTTGT+AGG + chr4_4:22453236-22453255 Msa0674680:intron 25.0%
! AGAATTAAAAATGCTGAACT+TGG + chr4_4:22453282-22453301 Msa0674680:CDS 25.0%
!! ATTAGTGGGATAATACTTTT+TGG + chr4_4:22453520-22453539 Msa0674680:CDS 25.0%
! GTAAAAGTAAATCTTACACT+CGG - chr4_4:22453559-22453578 None:intergenic 25.0%
! ACAATATAGATTATTACGAC+GGG - chr4_4:22453760-22453779 None:intergenic 25.0%
! CGTAATAATCTATATTGTAG+CGG + chr4_4:22453762-22453781 Msa0674680:intron 25.0%
!! TTATTGTAATTTTTGTCTCG+TGG - chr4_4:22453904-22453923 None:intergenic 25.0%
! TTAGGTTAAGCAAATATTAC+TGG - chr4_4:22454022-22454041 None:intergenic 25.0%
!! CTTTTTATATCCATCTTTTG+TGG + chr4_4:22454197-22454216 Msa0674680:intron 25.0%
! AAAGCTGAAAATTATTCTCT+AGG + chr4_4:22454449-22454468 Msa0674680:intron 25.0%
! AAGCTGAAAATTATTCTCTA+GGG + chr4_4:22454450-22454469 Msa0674680:intron 25.0%
! TTAGGAATCAAATTTCTGAA+TGG + chr4_4:22454741-22454760 Msa0674680:intron 25.0%
! GTAACAATTTGCATTAAGAA+AGG - chr4_4:22454801-22454820 None:intergenic 25.0%
! AAATTAAGTTAAAGGACTTC+TGG - chr4_4:22455231-22455250 None:intergenic 25.0%
!! ATTGCCCTTTTATGAAATTT+TGG + chr4_4:22455358-22455377 Msa0674680:intron 25.0%
! TTCATTTCTACTAGCTAAAA+TGG - chr4_4:22455416-22455435 None:intergenic 25.0%
! GTTACAATTATCATCATCAA+GGG - chr4_4:22455621-22455640 None:intergenic 25.0%
! AGTTACAATTATCATCATCA+AGG - chr4_4:22455622-22455641 None:intergenic 25.0%
! AAGATATAGACGATTAATCT+AGG - chr4_4:22455692-22455711 None:intergenic 25.0%
!! GCAATTTGAAATTGTATGAT+GGG + chr4_4:22455905-22455924 Msa0674680:three_prime_UTR 25.0%
! CATAGTAATATGCAAAAGAA+AGG + chr4_4:22455981-22456000 Msa0674680:three_prime_UTR 25.0%
!!! TCATGATTACTTTTTGAGAA+TGG + chr4_4:22456147-22456166 Msa0674680:three_prime_UTR 25.0%
! ACAAAACAGGTTTAAATGTA+TGG + chr4_4:22456202-22456221 Msa0674680:three_prime_UTR 25.0%
!!! TATTTTTAGTGGAGTTGAGA+CGG - chr4_4:22451347-22451366 None:intergenic 30.0%
!!! TTTGGAAAGGGTATTTTTAG+TGG - chr4_4:22451358-22451377 None:intergenic 30.0%
! ATTTAGGTAGTTGTTGTTGA+TGG - chr4_4:22451479-22451498 None:intergenic 30.0%
AAAGAAGATGATGTTGTGTT+TGG + chr4_4:22451548-22451567 Msa0674680:exon 30.0%
AAGAAGATGATGTTGTGTTT+GGG + chr4_4:22451549-22451568 Msa0674680:exon 30.0%
AAAACAGTTTCAATAAGAGG+TGG + chr4_4:22451643-22451662 Msa0674680:CDS 30.0%
!!! TTTTTTATCGTTTTGAACGC+AGG + chr4_4:22451819-22451838 Msa0674680:intron 30.0%
! TGTTCAAGATTTTGCTAAGA+TGG + chr4_4:22451868-22451887 Msa0674680:CDS 30.0%
AACAGACTTTACTTACCTTT+CGG + chr4_4:22452107-22452126 Msa0674680:intron 30.0%
! TGTTAACTCTCTAGTTCATA+GGG - chr4_4:22452162-22452181 None:intergenic 30.0%
!! GTTTTTCATAGCTTGTATGT+AGG + chr4_4:22452280-22452299 Msa0674680:intron 30.0%
! AATATTGAATGGATGATGGT+TGG + chr4_4:22452345-22452364 Msa0674680:intron 30.0%
TAAGTTCCACTTTAGATCAT+TGG - chr4_4:22452466-22452485 None:intergenic 30.0%
CTAAAGTGGAACTTAATTGA+TGG + chr4_4:22452471-22452490 Msa0674680:intron 30.0%
! GTAGAGATCTTTAGAAGAAT+TGG + chr4_4:22452666-22452685 Msa0674680:intron 30.0%
! AGATCTTTAGAAGAATTGGA+GGG + chr4_4:22452670-22452689 Msa0674680:intron 30.0%
! GATGATATGATGATGATTCT+CGG + chr4_4:22452760-22452779 Msa0674680:intron 30.0%
AAAGAAGTCAATAGTTGTTC+CGG - chr4_4:22452853-22452872 None:intergenic 30.0%
CAGGTTCTTTGTATTAAACA+TGG - chr4_4:22453155-22453174 None:intergenic 30.0%
! ATACATTTTACTCTATGGGA+TGG + chr4_4:22453197-22453216 Msa0674680:intron 30.0%
!!! TTGTTATTTTGTAGGTTCGA+AGG + chr4_4:22453244-22453263 Msa0674680:intron 30.0%
AGTTACATGAAACTTACCAA+AGG - chr4_4:22453372-22453391 None:intergenic 30.0%
!! ACCTGTTTTTCTCTTATTAG+TGG + chr4_4:22453505-22453524 Msa0674680:CDS 30.0%
!! CCTGTTTTTCTCTTATTAGT+GGG + chr4_4:22453506-22453525 Msa0674680:CDS 30.0%
ACTCTCCTTAACTATATTCT+TGG + chr4_4:22454046-22454065 Msa0674680:intron 30.0%
CATTGCCAAGAATATAGTTA+AGG - chr4_4:22454054-22454073 None:intergenic 30.0%
TAGGATGTACAGCAAATTAA+TGG + chr4_4:22454097-22454116 Msa0674680:intron 30.0%
ATTGAAAATGCCACAAAAGA+TGG - chr4_4:22454210-22454229 None:intergenic 30.0%
AGCTGAAAATTATTCTCTAG+GGG + chr4_4:22454451-22454470 Msa0674680:intron 30.0%
TTATGTTGGAAATTGTAGTC+AGG + chr4_4:22454560-22454579 Msa0674680:intron 30.0%
GATAAACAATGTGAAACAAC+AGG + chr4_4:22454650-22454669 Msa0674680:CDS 30.0%
AAAAGATGCAAATACTGTCT+TGG + chr4_4:22454678-22454697 Msa0674680:CDS 30.0%
TAAGACTTCAAAAACCACTT+CGG + chr4_4:22454707-22454726 Msa0674680:intron 30.0%
!!! TATTATACTTTTGGCTTGTC+AGG + chr4_4:22454940-22454959 Msa0674680:intron 30.0%
! CATAAAAGGGCAATTTTTCA+CGG - chr4_4:22455352-22455371 None:intergenic 30.0%
GGCACCAAAATTTCATAAAA+GGG - chr4_4:22455365-22455384 None:intergenic 30.0%
TGGCACCAAAATTTCATAAA+AGG - chr4_4:22455366-22455385 None:intergenic 30.0%
GTATCTTCACTTCAGAATTA+TGG - chr4_4:22455481-22455500 None:intergenic 30.0%
TAGTCTATGTCTAGATAACA+TGG - chr4_4:22455656-22455675 None:intergenic 30.0%
TAGACATAGACTAATTAGCT+TGG + chr4_4:22455663-22455682 Msa0674680:intron 30.0%
TAATCAAAAGGATCAATTCG+CGG - chr4_4:22455852-22455871 None:intergenic 30.0%
! GGCAATTTGAAATTGTATGA+TGG + chr4_4:22455904-22455923 Msa0674680:three_prime_UTR 30.0%
! ATGTTTCTGTTGTGGAATAA+TGG + chr4_4:22455936-22455955 Msa0674680:three_prime_UTR 30.0%
AGAATGGACACAAGAAATTA+GGG + chr4_4:22456163-22456182 Msa0674680:three_prime_UTR 30.0%
!! TGAAAATGGACTGCACAAAT+TGG - chr4_4:22451435-22451454 None:intergenic 35.0%
GTTTAGTTGAAGACATGTTG+TGG - chr4_4:22451589-22451608 None:intergenic 35.0%
! AGTAGCAGAGTTTTTATCAG+TGG - chr4_4:22451736-22451755 None:intergenic 35.0%
ACTGATAAAAACTCTGCTAC+TGG + chr4_4:22451735-22451754 Msa0674680:CDS 35.0%
CTGATAAAAACTCTGCTACT+GGG + chr4_4:22451736-22451755 Msa0674680:CDS 35.0%
GCAAAATCTTGAACAGTTTC+AGG - chr4_4:22451863-22451882 None:intergenic 35.0%
GATGGAACTTCAAGAAATTC+AGG + chr4_4:22451886-22451905 Msa0674680:CDS 35.0%
! TCGAACTCGTGTTATCATTT+TGG - chr4_4:22452065-22452084 None:intergenic 35.0%
ACAGACTTTACTTACCTTTC+GGG + chr4_4:22452108-22452127 Msa0674680:intron 35.0%
! GTTAACTCTCTAGTTCATAG+GGG - chr4_4:22452161-22452180 None:intergenic 35.0%
! GTGTTAACTCTCTAGTTCAT+AGG - chr4_4:22452163-22452182 None:intergenic 35.0%
ATGATGTTTCACATGAGATC+TGG + chr4_4:22452258-22452277 Msa0674680:intron 35.0%
AGATCATTGGCATCTTATGT+GGG - chr4_4:22452453-22452472 None:intergenic 35.0%
TAGATCATTGGCATCTTATG+TGG - chr4_4:22452454-22452473 None:intergenic 35.0%
AAGATGCCAATGATCTAAAG+TGG + chr4_4:22452457-22452476 Msa0674680:intron 35.0%
! AGTGGAACTTAATTGATGGT+TGG + chr4_4:22452475-22452494 Msa0674680:intron 35.0%
!! TAATTGATGGTTGGTGATGA+CGG + chr4_4:22452484-22452503 Msa0674680:intron 35.0%
! GAGATCTTTAGAAGAATTGG+AGG + chr4_4:22452669-22452688 Msa0674680:intron 35.0%
TCAATTCTTGCCTTGATAAG+TGG + chr4_4:22452721-22452740 Msa0674680:intron 35.0%
GAATCATCATCATATCATCG+TGG - chr4_4:22452759-22452778 None:intergenic 35.0%
! ATATGATGATGATTCTCGGA+GGG + chr4_4:22452764-22452783 Msa0674680:intron 35.0%
CATGAGATTCCAATCCAAAT+GGG + chr4_4:22452815-22452834 Msa0674680:intron 35.0%
TGTGTATATAATCACACTGG+TGG + chr4_4:22452882-22452901 Msa0674680:intron 35.0%
ATAATCACACTGGTGGTTTA+TGG + chr4_4:22452889-22452908 Msa0674680:intron 35.0%
TAATCACACTGGTGGTTTAT+GGG + chr4_4:22452890-22452909 Msa0674680:intron 35.0%
! TTAAGATCACTGTTGCTTGT+AGG + chr4_4:22452948-22452967 Msa0674680:intron 35.0%
! GGAATGAATGATGGGAAATT+AGG - chr4_4:22453339-22453358 None:intergenic 35.0%
GCAAGAATGGAATGAATGAT+GGG - chr4_4:22453347-22453366 None:intergenic 35.0%
TACATGAAACTTACCAAAGG+AGG - chr4_4:22453369-22453388 None:intergenic 35.0%
! TGCTTTCAATTTGAAGTGCT+TGG + chr4_4:22453419-22453438 Msa0674680:intron 35.0%
! AATTTGAAGTGCTTGGCAAA+TGG + chr4_4:22453426-22453445 Msa0674680:intron 35.0%
CCCACTAATAAGAGAAAAAC+AGG - chr4_4:22453509-22453528 None:intergenic 35.0%
!! AGTGGGATAATACTTTTTGG+TGG + chr4_4:22453523-22453542 Msa0674680:CDS 35.0%
AGATCAGTGTTGTCAAATAG+CGG + chr4_4:22453734-22453753 Msa0674680:intron 35.0%
!! AACAAATCGGTGTCAAATAG+AGG + chr4_4:22453791-22453810 Msa0674680:intron 35.0%
GTGTCAAATAGAGGCTATAT+CGG + chr4_4:22453800-22453819 Msa0674680:intron 35.0%
GTGTTGTCAATCATGAATAG+TGG - chr4_4:22453862-22453881 None:intergenic 35.0%
GAATTGTTCAATGTTTGAGC+AGG + chr4_4:22453946-22453965 Msa0674680:intron 35.0%
!! TGGCCAATCCTTTTACTTTT+GGG + chr4_4:22453989-22454008 Msa0674680:intron 35.0%
!!! TAGTTAAGGAGAGTGCTTTT+AGG - chr4_4:22454040-22454059 None:intergenic 35.0%
! TTTGAGGTAGCATGATCAAA+AGG - chr4_4:22454154-22454173 None:intergenic 35.0%
!! GTACAATGTAGTGCTTTTTG+AGG - chr4_4:22454170-22454189 None:intergenic 35.0%
TACTTGTCTAATTTCTCAGC+TGG + chr4_4:22454247-22454266 Msa0674680:intron 35.0%
AGGAGACAATAATCAGGAAA+TGG - chr4_4:22454353-22454372 None:intergenic 35.0%
GTAAACAGGAGACAATAATC+AGG - chr4_4:22454359-22454378 None:intergenic 35.0%
TCTGCGAAGAATAAGTAAAC+AGG - chr4_4:22454373-22454392 None:intergenic 35.0%
TGTTTACTTATTCTTCGCAG+AGG + chr4_4:22454372-22454391 Msa0674680:intron 35.0%
TGGTGTAATCTCTGCATTAA+TGG + chr4_4:22454620-22454639 Msa0674680:CDS 35.0%
GGAATCAAATTTCTGAATGG+TGG + chr4_4:22454744-22454763 Msa0674680:intron 35.0%
TTACTGCTTTCAACTGTTGA+GGG + chr4_4:22454817-22454836 Msa0674680:intron 35.0%
! TTTGAACATCTCTCGGTTTT+TGG - chr4_4:22455060-22455079 None:intergenic 35.0%
TTTGGACTGAAGATCACTAA+AGG - chr4_4:22455328-22455347 None:intergenic 35.0%
!!! ATGAAATTTTGGTGCCATGT+TGG + chr4_4:22455369-22455388 Msa0674680:intron 35.0%
TATATCTTCGCATACCTTCT+GGG + chr4_4:22455704-22455723 Msa0674680:intron 35.0%
ATTATTGCTACAAACCCAGA+AGG - chr4_4:22455721-22455740 None:intergenic 35.0%
TGATACTGAATTCTGATTGC+AGG + chr4_4:22455773-22455792 Msa0674680:intron 35.0%
!! TTGAAATTGTATGATGGGTG+TGG + chr4_4:22455910-22455929 Msa0674680:three_prime_UTR 35.0%
! TGTGGTATATGTTTCTGTTG+TGG + chr4_4:22455928-22455947 Msa0674680:three_prime_UTR 35.0%
GAGATAAAGATCGAAAGATC+TGG + chr4_4:22456003-22456022 Msa0674680:three_prime_UTR 35.0%
TAAAGGAAACCATTCTGTTC+CGG - chr4_4:22456091-22456110 None:intergenic 35.0%
GAGAATGGACACAAGAAATT+AGG + chr4_4:22456162-22456181 Msa0674680:three_prime_UTR 35.0%
!! AATGGACTGCACAAATTGGT+GGG - chr4_4:22451431-22451450 None:intergenic 40.0%
!! AAATGGACTGCACAAATTGG+TGG - chr4_4:22451432-22451451 None:intergenic 40.0%
GAGAATGGAGGATGTGAAAA+TGG - chr4_4:22451449-22451468 None:intergenic 40.0%
!! GTTGATGGCAAGTTTGAGAA+TGG - chr4_4:22451464-22451483 None:intergenic 40.0%
ATGTTGTGTTTGGGTGTAGT+TGG + chr4_4:22451558-22451577 Msa0674680:CDS 40.0%
CGCAGGTTCTGTATTATAGA+AGG + chr4_4:22451836-22451855 Msa0674680:intron 40.0%
AGGATAATATTCGGAGTCGA+AGG + chr4_4:22451906-22451925 Msa0674680:CDS 40.0%
GATAACACGAGTTCGATTCT+TGG + chr4_4:22452069-22452088 Msa0674680:intron 40.0%
TTACCTTTCGGGAAAAACTC+CGG + chr4_4:22452119-22452138 Msa0674680:intron 40.0%
GGAAAAACTCCGGATTACTA+GGG + chr4_4:22452129-22452148 Msa0674680:intron 40.0%
GCTTGTATGTAGGAAGATGA+AGG + chr4_4:22452290-22452309 Msa0674680:intron 40.0%
GGGAAACTTTACTCGATCAA+AGG - chr4_4:22452433-22452452 None:intergenic 40.0%
TAGCATTCTGATGCTCAAGT+CGG + chr4_4:22452559-22452578 Msa0674680:intron 40.0%
CTCAAGTCGGTAGAAGATTT+AGG + chr4_4:22452572-22452591 Msa0674680:intron 40.0%
GTAGAAGATTTAGGTGAGTG+AGG + chr4_4:22452581-22452600 Msa0674680:intron 40.0%
AGACGACAATCCACTTATCA+AGG - chr4_4:22452734-22452753 None:intergenic 40.0%
! GATATGATGATGATTCTCGG+AGG + chr4_4:22452763-22452782 Msa0674680:intron 40.0%
GCATGAGATTCCAATCCAAA+TGG + chr4_4:22452814-22452833 Msa0674680:intron 40.0%
AACTGTAGAACACTTTCTCG+CGG - chr4_4:22453012-22453031 None:intergenic 40.0%
GGCAAGAATGGAATGAATGA+TGG - chr4_4:22453348-22453367 None:intergenic 40.0%
AACAGGTTGCATAATACTGC+CGG - chr4_4:22453492-22453511 None:intergenic 40.0%
TAAATCTTACACTCGGAGCA+AGG - chr4_4:22453552-22453571 None:intergenic 40.0%
! TGAATCCGACTCTTTTGTAC+TGG + chr4_4:22453602-22453621 Msa0674680:intron 40.0%
TTGCACCAGTACAAAAGAGT+CGG - chr4_4:22453610-22453629 None:intergenic 40.0%
! GTAGCGGAATTCGAACAAAT+CGG + chr4_4:22453778-22453797 Msa0674680:intron 40.0%
AACACTAGAGAAGAGAGAGA+GGG + chr4_4:22453877-22453896 Msa0674680:intron 40.0%
! CTGGCCAATCCTTTTACTTT+TGG + chr4_4:22453988-22454007 Msa0674680:intron 40.0%
GCACCCAAAAGTAAAAGGAT+TGG - chr4_4:22453995-22454014 None:intergenic 40.0%
! TCTCTAGGGGCATATTCTAT+TGG + chr4_4:22454464-22454483 Msa0674680:intron 40.0%
!! TAGTCAGGTTGATCCTATTG+TGG + chr4_4:22454575-22454594 Msa0674680:intron 40.0%
TGCAAATACTGTCTTGGTAC+TGG + chr4_4:22454684-22454703 Msa0674680:CDS 40.0%
TAAAATGCAGATCTCCGAAG+TGG - chr4_4:22454724-22454743 None:intergenic 40.0%
! ACTTCGGAGATCTGCATTTT+AGG + chr4_4:22454723-22454742 Msa0674680:intron 40.0%
! ATGGTGGAACTGAAGCATTA+TGG + chr4_4:22454760-22454779 Msa0674680:intron 40.0%
GTTACTGCTTTCAACTGTTG+AGG + chr4_4:22454816-22454835 Msa0674680:intron 40.0%
TACTGCTTTCAACTGTTGAG+GGG + chr4_4:22454818-22454837 Msa0674680:intron 40.0%
ATGTGCTCGATGTTCAAACA+CGG + chr4_4:22454972-22454991 Msa0674680:CDS 40.0%
!!! TCGGTTTTTGGTGGTGATAA+AGG - chr4_4:22455048-22455067 None:intergenic 40.0%
GGAGCAATTTGAACATCTCT+CGG - chr4_4:22455067-22455086 None:intergenic 40.0%
GAGAGATGTTCAAATTGCTC+CGG + chr4_4:22455066-22455085 Msa0674680:CDS 40.0%
! AGGGCAATTTTTCACGGTTT+TGG - chr4_4:22455346-22455365 None:intergenic 40.0%
CTTCCAAAATAAGGCCAACA+TGG - chr4_4:22455386-22455405 None:intergenic 40.0%
! GGCATCGAACTTCCAAAATA+AGG - chr4_4:22455395-22455414 None:intergenic 40.0%
CTATATCTTCGCATACCTTC+TGG + chr4_4:22455703-22455722 Msa0674680:intron 40.0%
TATCCATATTCCCAGAGAGA+TGG + chr4_4:22456029-22456048 Msa0674680:three_prime_UTR 40.0%
! TATCCATCTCTCTGGGAATA+TGG - chr4_4:22456035-22456054 None:intergenic 40.0%
GGTATCTTATCCATCTCTCT+GGG - chr4_4:22456042-22456061 None:intergenic 40.0%
AGGTATCTTATCCATCTCTC+TGG - chr4_4:22456043-22456062 None:intergenic 40.0%
AAAGGAAACCATTCTGTTCC+GGG - chr4_4:22456090-22456109 None:intergenic 40.0%
! ATGGACTGCACAAATTGGTG+GGG - chr4_4:22451430-22451449 None:intergenic 45.0%
GATGGCAAGTTTGAGAATGG+AGG - chr4_4:22451461-22451480 None:intergenic 45.0%
TTGTGTTTGGGTGTAGTTGG+TGG + chr4_4:22451561-22451580 Msa0674680:CDS 45.0%
TGTGTTTGGGTGTAGTTGGT+GGG + chr4_4:22451562-22451581 Msa0674680:CDS 45.0%
ACACGAGTTCGATTCTTGGA+TGG + chr4_4:22452073-22452092 Msa0674680:intron 45.0%
! AATCCGGAGTTTTTCCCGAA+AGG - chr4_4:22452125-22452144 None:intergenic 45.0%
GGGAAAAACTCCGGATTACT+AGG + chr4_4:22452128-22452147 Msa0674680:intron 45.0%
CAAGATGAAGGGATGATCAG+TGG + chr4_4:22452390-22452409 Msa0674680:intron 45.0%
ATGATCAGTGGCAAGAGAAG+TGG + chr4_4:22452402-22452421 Msa0674680:intron 45.0%
TTGAGCATCAGAATGCTAGC+AGG - chr4_4:22452557-22452576 None:intergenic 45.0%
ATTCCAATCCAAATGGGCCT+TGG + chr4_4:22452821-22452840 Msa0674680:intron 45.0%
CATTCCATTCTTGCCTCCTT+TGG + chr4_4:22453353-22453372 Msa0674680:CDS 45.0%
CTTACCAAAGGAGGCAAGAA+TGG - chr4_4:22453360-22453379 None:intergenic 45.0%
AAAGAGTCGGATTCACATCG+AGG - chr4_4:22453597-22453616 None:intergenic 45.0%
!! GTGCTATAGCACTGATGAGT+AGG + chr4_4:22453822-22453841 Msa0674680:intron 45.0%
CAACACTAGAGAAGAGAGAG+AGG + chr4_4:22453876-22453895 Msa0674680:intron 45.0%
CCAGCAACAGCAATAGCATA+GGG - chr4_4:22453972-22453991 None:intergenic 45.0%
GCAACGCACCCAAAAGTAAA+AGG - chr4_4:22454000-22454019 None:intergenic 45.0%
CTGGAGCTTAAGCTTGGAAT+AGG + chr4_4:22454266-22454285 Msa0674680:CDS 45.0%
GAGCTTAAGCTTGGAATAGG+TGG + chr4_4:22454269-22454288 Msa0674680:CDS 45.0%
TGGCGTCAGATTATCACTGT+TGG + chr4_4:22454484-22454503 Msa0674680:intron 45.0%
CCAGAGAATGATGCCACAAT+AGG - chr4_4:22454591-22454610 None:intergenic 45.0%
CCTATTGTGGCATCATTCTC+TGG + chr4_4:22454588-22454607 Msa0674680:CDS 45.0%
ATTGTGGCATCATTCTCTGG+TGG + chr4_4:22454591-22454610 Msa0674680:CDS 45.0%
TTCAACTGTTGAGGGGAAGA+TGG + chr4_4:22454825-22454844 Msa0674680:intron 45.0%
TGTGCTCGATGTTCAAACAC+GGG + chr4_4:22454973-22454992 Msa0674680:CDS 45.0%
AGCACTTGTCCTGATTGAAC+CGG + chr4_4:22454996-22455015 Msa0674680:CDS 45.0%
!! GAACATCTCTCGGTTTTTGG+TGG - chr4_4:22455057-22455076 None:intergenic 45.0%
TGTTCAAATTGCTCCGGATC+TGG + chr4_4:22455072-22455091 Msa0674680:CDS 45.0%
!!! GTGCCATGTTGGCCTTATTT+TGG + chr4_4:22455380-22455399 Msa0674680:intron 45.0%
GCAGAGGTCTAACGACAAAA+AGG - chr4_4:22455556-22455575 None:intergenic 45.0%
ACCTCTGCCTTACTAACACT+CGG + chr4_4:22455568-22455587 Msa0674680:intron 45.0%
ACTGTACCCGAGTGTTAGTA+AGG - chr4_4:22455578-22455597 None:intergenic 45.0%
ACTAACACTCGGGTACAGTT+TGG + chr4_4:22455579-22455598 Msa0674680:intron 45.0%
TCAAGGGAACAATGTTGACG+TGG - chr4_4:22455605-22455624 None:intergenic 45.0%
TGTCCAACATGTCTTTGCAC+CGG + chr4_4:22455801-22455820 Msa0674680:CDS 45.0%
ATTCCGGTGCAAAGACATGT+TGG - chr4_4:22455807-22455826 None:intergenic 45.0%
AACATGTCTTTGCACCGGAA+TGG + chr4_4:22455806-22455825 Msa0674680:CDS 45.0%
ATCAAGATGGAACTGAGTCG+AGG - chr4_4:22456063-22456082 None:intergenic 45.0%
AGTTCCATCTTGATACCACC+CGG + chr4_4:22456069-22456088 Msa0674680:three_prime_UTR 45.0%
!! AAAAATTAAATTTAAAAAAG+TGG + chr4_4:22455505-22455524 Msa0674680:intron 5.0%
CAATAAGAGGTGGCGTGTCA+TGG + chr4_4:22451653-22451672 Msa0674680:CDS 50.0%
!! GGGAAGTGTCCCTAGTAATC+CGG - chr4_4:22452141-22452160 None:intergenic 50.0%
!! TTGGTGATGACGGAACGTAG+TGG + chr4_4:22452494-22452513 Msa0674680:intron 50.0%
GGAGGTTGACGATTGATCTC+TGG + chr4_4:22452518-22452537 Msa0674680:intron 50.0%
GGTTGACGATTGATCTCTGG+CGG + chr4_4:22452521-22452540 Msa0674680:intron 50.0%
GTTGACGATTGATCTCTGGC+GGG + chr4_4:22452522-22452541 Msa0674680:intron 50.0%
TTGACGATTGATCTCTGGCG+GGG + chr4_4:22452523-22452542 Msa0674680:intron 50.0%
TGATGTGTACCTTGCTCCTG+AGG + chr4_4:22452621-22452640 Msa0674680:intron 50.0%
GATGTGTACCTTGCTCCTGA+GGG + chr4_4:22452622-22452641 Msa0674680:intron 50.0%
GCGTCTTCTCACGTACTCAA+TGG - chr4_4:22452701-22452720 None:intergenic 50.0%
TGCAGACTTCAGCAAACCTC+CGG + chr4_4:22453470-22453489 Msa0674680:intron 50.0%
AGGTTGCATAATACTGCCGG+AGG - chr4_4:22453489-22453508 None:intergenic 50.0%
! CCCTATGCTATTGCTGTTGC+TGG + chr4_4:22453969-22453988 Msa0674680:intron 50.0%
GCCAGCAACAGCAATAGCAT+AGG - chr4_4:22453973-22453992 None:intergenic 50.0%
TCTCAGCTGGAGCTTAAGCT+TGG + chr4_4:22454260-22454279 Msa0674680:intron 50.0%
TGCATCTGCCTATGCAGTTG+AGG + chr4_4:22454321-22454340 Msa0674680:CDS 50.0%
GGATGCTACCTCAACTGCAT+AGG - chr4_4:22454332-22454351 None:intergenic 50.0%
TCATTCTCTGGTGGAGCTGT+TGG + chr4_4:22454600-22454619 Msa0674680:CDS 50.0%
!! AGGAGGATACCGGTTCAATC+AGG - chr4_4:22455008-22455027 None:intergenic 50.0%
GAACCGGTATCCTCCTTCAA+TGG + chr4_4:22455012-22455031 Msa0674680:CDS 50.0%
CCACCATTGAAGGAGGATAC+CGG - chr4_4:22455018-22455037 None:intergenic 50.0%
CTGATCTCCACCATTGAAGG+AGG - chr4_4:22455025-22455044 None:intergenic 50.0%
AGGCTGATCTCCACCATTGA+AGG - chr4_4:22455028-22455047 None:intergenic 50.0%
AAATTGCTCCGGATCTGGCA+AGG + chr4_4:22455077-22455096 Msa0674680:CDS 50.0%
ATGTCCAACCTTGCCAGATC+CGG - chr4_4:22455088-22455107 None:intergenic 50.0%
CCTCTGCCTTACTAACACTC+GGG + chr4_4:22455569-22455588 Msa0674680:intron 50.0%
TCTTTGCACCGGAATGGCTA+TGG + chr4_4:22455812-22455831 Msa0674680:CDS 50.0%
TTCGCTTGCCATAGCCATTC+CGG - chr4_4:22455823-22455842 None:intergenic 50.0%
TGTTCCGGGTGGTATCAAGA+TGG - chr4_4:22456076-22456095 None:intergenic 50.0%
TGATACCACCCGGAACAGAA+TGG + chr4_4:22456079-22456098 Msa0674680:three_prime_UTR 50.0%
!! GTGATGACGGAACGTAGTGG+AGG + chr4_4:22452497-22452516 Msa0674680:intron 55.0%
! ATGACGGAACGTAGTGGAGG+AGG + chr4_4:22452500-22452519 Msa0674680:intron 55.0%
GAGCCAAGGCCCATTTGGAT+TGG - chr4_4:22452827-22452846 None:intergenic 55.0%
AAATGGGCCTTGGCTCAGTC+CGG + chr4_4:22452831-22452850 Msa0674680:intron 55.0%
AGTTGTTCCGGACTGAGCCA+AGG - chr4_4:22452841-22452860 None:intergenic 55.0%
CCGGTATCCTCCTTCAATGG+TGG + chr4_4:22455015-22455034 Msa0674680:CDS 55.0%
CCCGAGTGTTAGTAAGGCAG+AGG - chr4_4:22455572-22455591 None:intergenic 55.0%
GGAAACCATTCTGTTCCGGG+TGG - chr4_4:22456087-22456106 None:intergenic 55.0%
CGATTGATCTCTGGCGGGGA+TGG + chr4_4:22452527-22452546 Msa0674680:intron 60.0%
ACCTTGCTCCTGAGGGAGTG+AGG + chr4_4:22452629-22452648 Msa0674680:intron 60.0%
CCTTGCTCCTGAGGGAGTGA+GGG + chr4_4:22452630-22452649 Msa0674680:intron 60.0%
GGACTGAGCCAAGGCCCATT+TGG - chr4_4:22452832-22452851 None:intergenic 60.0%
TGCTCCGGATCTGGCAAGGT+TGG + chr4_4:22455081-22455100 Msa0674680:intron 60.0%
CCCTCACTCCCTCAGGAGCA+AGG - chr4_4:22452633-22452652 None:intergenic 65.0%
TGCTCCTGAGGGAGTGAGGG+AGG + chr4_4:22452633-22452652 Msa0674680:intron 65.0%
AGGACCTCCCTCACTCCCTC+AGG - chr4_4:22452640-22452659 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 22451322 22456236 22451322 ID=Msa0674680;Name=Msa0674680
chr4_4 mRNA 22451322 22456236 22451322 ID=Msa0674680-mRNA-1;Parent=Msa0674680;Name=Msa0674680-mRNA-1;_AED=0.25;_eAED=0.25;_QI=233|1|1|1|1|1|8|364|313
chr4_4 exon 22451322 22451757 22451322 ID=Msa0674680-mRNA-1:exon:6313;Parent=Msa0674680-mRNA-1
chr4_4 exon 22451841 22451955 22451841 ID=Msa0674680-mRNA-1:exon:6314;Parent=Msa0674680-mRNA-1
chr4_4 exon 22453258 22453374 22453258 ID=Msa0674680-mRNA-1:exon:6315;Parent=Msa0674680-mRNA-1
chr4_4 exon 22453475 22453561 22453475 ID=Msa0674680-mRNA-1:exon:6316;Parent=Msa0674680-mRNA-1
chr4_4 exon 22454266 22454342 22454266 ID=Msa0674680-mRNA-1:exon:6317;Parent=Msa0674680-mRNA-1
chr4_4 exon 22454578 22454705 22454578 ID=Msa0674680-mRNA-1:exon:6318;Parent=Msa0674680-mRNA-1
chr4_4 exon 22454962 22455098 22454962 ID=Msa0674680-mRNA-1:exon:6319;Parent=Msa0674680-mRNA-1
chr4_4 exon 22455795 22456236 22455795 ID=Msa0674680-mRNA-1:exon:6320;Parent=Msa0674680-mRNA-1
chr4_4 five_prime_UTR 22451322 22451554 22451322 ID=Msa0674680-mRNA-1:five_prime_utr;Parent=Msa0674680-mRNA-1
chr4_4 CDS 22451555 22451757 22451555 ID=Msa0674680-mRNA-1:cds;Parent=Msa0674680-mRNA-1
chr4_4 CDS 22451841 22451955 22451841 ID=Msa0674680-mRNA-1:cds;Parent=Msa0674680-mRNA-1
chr4_4 CDS 22453258 22453374 22453258 ID=Msa0674680-mRNA-1:cds;Parent=Msa0674680-mRNA-1
chr4_4 CDS 22453475 22453561 22453475 ID=Msa0674680-mRNA-1:cds;Parent=Msa0674680-mRNA-1
chr4_4 CDS 22454266 22454342 22454266 ID=Msa0674680-mRNA-1:cds;Parent=Msa0674680-mRNA-1
chr4_4 CDS 22454578 22454705 22454578 ID=Msa0674680-mRNA-1:cds;Parent=Msa0674680-mRNA-1
chr4_4 CDS 22454962 22455098 22454962 ID=Msa0674680-mRNA-1:cds;Parent=Msa0674680-mRNA-1
chr4_4 CDS 22455795 22455872 22455795 ID=Msa0674680-mRNA-1:cds;Parent=Msa0674680-mRNA-1
chr4_4 three_prime_UTR 22455873 22456236 22455873 ID=Msa0674680-mRNA-1:three_prime_utr;Parent=Msa0674680-mRNA-1
Gene Sequence

>Msa0674680

ATGATGTTGTGTTTGGGTGTAGTTGGTGGGTCCACAACATGTCTTCAACTAAACAACACCAAAAGATTCATTCATCTAAATAATAAGAAAAACAGTTTCAATAAGAGGTGGCGTGTCATGGCACTTGAATTTGAATCAGACTCTTCTTCTTTTGCATCTTCTATTGATTCTTCTGATACCACTGATAAAAACTCTGCTACTGGGTTCTGTATTATAGAAGGACCTGAAACTGTTCAAGATTTTGCTAAGATGGAACTTCAAGAAATTCAGGATAATATTCGGAGTCGAAGGAATAAGATTTTTTTACATATGGAAGAGGTTCGAAGGCTTAGAATACAGCAAAGAATTAAAAATGCTGAACTTGGAATTTTTAAAGAAGAGCAAGAGAATGAACTTCCTAATTTCCCATCATTCATTCCATTCTTGCCTCCTTTGACTTCAGCAAACCTCCGGCAGTATTATGCAACCTGTTTTTCTCTTATTAGTGGGATAATACTTTTTGGTGGTCTCCTTGCTCCGAGTCTGGAGCTTAAGCTTGGAATAGGTGGCACATCTTATGCAGATTTTATTCAAAATATGCATCTGCCTATGCAGTTGAGTCAGGTTGATCCTATTGTGGCATCATTCTCTGGTGGAGCTGTTGGTGTAATCTCTGCATTAATGGTTGTTGAGATAAACAATGTGAAACAACAGGAACAGAAAAGATGCAAATACTGTCTTGGTACTGGATATCTTGCATGTGCTCGATGTTCAAACACGGGAGCACTTGTCCTGATTGAACCGGTATCCTCCTTCAATGGTGGAGATCAGCCTTTATCACCACCAAAAACCGAGAGATGTTCAAATTGCTCCGGATCTGGCAAGGTCATGTGTCCAACATGTCTTTGCACCGGAATGGCTATGGCAAGCGAACATGATCCGCGAATTGATCCTTTTGATTAG

Protein sequence

>Msa0674680

MMLCLGVVGGSTTCLQLNNTKRFIHLNNKKNSFNKRWRVMALEFESDSSSFASSIDSSDTTDKNSATGFCIIEGPETVQDFAKMELQEIQDNIRSRRNKIFLHMEEVRRLRIQQRIKNAELGIFKEEQENELPNFPSFIPFLPPLTSANLRQYYATCFSLISGIILFGGLLAPSLELKLGIGGTSYADFIQNMHLPMQLSQVDPIVASFSGGAVGVISALMVVEINNVKQQEQKRCKYCLGTGYLACARCSNTGALVLIEPVSSFNGGDQPLSPPKTERCSNCSGSGKVMCPTCLCTGMAMASEHDPRIDPFD*