AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0215800

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0215800 MtrunA17_Chr2g0317131 93.168 483 33 0 1 483 1 483 0.0 892
Msa0215800 MtrunA17_Chr2g0317151 86.957 483 53 2 1 483 1 473 0.0 810
Msa0215800 MtrunA17_Chr2g0317161 81.159 483 79 1 1 483 1 471 0.0 775
Msa0215800 MtrunA17_Chr2g0317171 81.818 484 80 2 1 483 1 477 0.0 775
Msa0215800 MtrunA17_Chr2g0317221 88.831 385 43 0 99 483 7 391 0.0 667
Msa0215800 MtrunA17_Chr8g0392601 41.190 437 257 0 40 476 9 445 3.69e-122 365
Msa0215800 MtrunA17_Chr6g0483361 41.342 462 254 5 21 476 10 460 2.56e-121 363
Msa0215800 MtrunA17_Chr6g0483381 40.085 469 268 3 11 476 4 462 5.39e-121 362
Msa0215800 MtrunA17_Chr1g0208791 41.379 435 255 0 42 476 42 476 1.87e-120 362
Msa0215800 MtrunA17_Chr6g0483341 39.540 435 262 1 43 476 41 475 1.44e-113 344
Msa0215800 MtrunA17_Chr1g0208821 39.525 463 275 3 16 477 17 475 3.37e-113 343
Msa0215800 MtrunA17_Chr6g0477961 40.460 435 253 2 46 476 30 462 2.63e-109 332
Msa0215800 MtrunA17_Chr6g0483331 38.952 439 259 3 43 476 12 446 3.81e-107 326
Msa0215800 MtrunA17_Chr7g0251331 37.712 472 286 3 14 483 1 466 5.83e-105 321
Msa0215800 MtrunA17_Chr4g0024501 36.646 483 295 3 12 483 22 504 1.85e-102 316
Msa0215800 MtrunA17_Chr2g0322671 35.744 484 301 3 3 476 2 485 2.88e-100 310
Msa0215800 MtrunA17_Chr6g0449061 36.864 472 282 3 6 476 8 464 4.90e-100 309
Msa0215800 MtrunA17_Chr6g0483351 40.945 381 215 3 102 476 1 377 1.01e-98 303
Msa0215800 MtrunA17_Chr1g0208881 36.961 441 278 0 43 483 25 465 1.63e-94 294
Msa0215800 MtrunA17_Chr6g0483161 40.263 380 202 3 100 476 1 358 8.11e-92 283
Msa0215800 MtrunA17_Chr1g0208891 35.650 446 277 2 43 483 24 464 5.73e-89 280
Msa0215800 MtrunA17_Chr5g0442331 36.652 442 277 3 34 474 38 477 8.77e-87 275
Msa0215800 MtrunA17_Chr2g0288281 35.770 383 245 1 102 483 1 383 2.55e-84 265
Msa0215800 MtrunA17_Chr7g0254511 36.105 457 290 1 20 476 7 461 2.70e-83 265
Msa0215800 MtrunA17_Chr1g0202761 33.891 478 299 6 10 476 3 474 6.13e-81 259
Msa0215800 MtrunA17_Chr5g0412771 33.716 436 282 2 44 476 57 488 1.38e-79 256
Msa0215800 MtrunA17_Chr1g0203791 34.038 426 275 2 52 474 73 495 6.03e-79 256
Msa0215800 MtrunA17_Chr8g0368001 33.103 435 290 1 42 476 49 482 6.03e-79 255
Msa0215800 MtrunA17_Chr5g0397991 33.045 463 291 4 24 470 34 493 8.35e-79 255
Msa0215800 MtrunA17_Chr5g0412541 34.562 434 282 2 44 476 37 469 7.71e-78 251
Msa0215800 MtrunA17_Chr6g0468521 32.558 473 299 6 11 476 2 461 9.99e-76 246
Msa0215800 MtrunA17_Chr6g0468531 34.255 470 296 5 11 476 2 462 1.15e-75 245
Msa0215800 MtrunA17_Chr7g0254521 35.253 434 280 1 43 476 31 463 1.73e-75 245
Msa0215800 MtrunA17_Chr8g0389801 34.101 434 282 3 42 474 22 452 1.03e-73 240
Msa0215800 MtrunA17_Chr6g0473701 31.568 491 305 8 11 474 73 559 2.68e-73 243
Msa0215800 MtrunA17_Chr7g0251321 35.200 375 224 1 102 476 1 356 3.74e-73 236
Msa0215800 MtrunA17_Chr5g0428251 30.785 484 317 6 10 483 17 492 3.57e-71 236
Msa0215800 MtrunA17_Chr7g0254531 37.766 376 231 2 102 476 1 374 1.20e-70 230
Msa0215800 MtrunA17_Chr3g0132531 32.809 445 289 3 41 476 36 479 3.28e-70 232
Msa0215800 MtrunA17_Chr7g0248051 35.102 490 293 6 6 476 18 501 2.11e-69 230
Msa0215800 MtrunA17_Chr6g0468511 32.976 467 305 4 11 476 2 461 4.64e-69 228
Msa0215800 MtrunA17_Chr6g0460541 35.325 385 246 2 100 483 3 385 1.36e-66 219
Msa0215800 MtrunA17_Chr1g0154441 34.400 375 245 1 102 476 1 374 5.06e-66 218
Msa0215800 MtrunA17_Chr6g0467321 30.444 450 304 3 43 483 42 491 6.80e-66 221
Msa0215800 MtrunA17_Chr3g0140931 30.000 450 306 4 10 455 19 463 4.10e-64 217
Msa0215800 MtrunA17_Chr5g0412571 37.047 386 225 9 100 476 38 414 2.43e-62 209
Msa0215800 MtrunA17_Chr4g0013031 31.043 422 283 4 43 459 66 484 1.14e-61 210
Msa0215800 MtrunA17_Chr4g0025551 62.570 179 44 5 121 299 1 156 1.46e-56 185
Msa0215800 MtrunA17_Chr7g0254501 39.661 295 166 5 187 476 2 289 1.71e-54 185
Msa0215800 MtrunA17_Chr2g0317211 82.000 100 12 1 1 100 1 94 1.23e-50 168
Msa0215800 MtrunA17_Chr3g0132541 27.331 472 278 5 7 476 10 418 1.48e-49 175
Msa0215800 MtrunA17_Chr2g0295631 25.109 458 325 3 42 482 19 475 1.11e-45 166
Msa0215800 MtrunA17_Chr5g0440661 29.178 377 203 6 102 477 1 314 2.88e-43 155
Msa0215800 MtrunA17_Chr6g0483264 40.513 195 116 0 282 476 1 195 1.02e-39 143
Msa0215800 MtrunA17_Chr8g0364761 31.250 256 175 1 56 310 66 321 5.43e-39 144
Msa0215800 MtrunA17_Chr6g0483241 37.569 181 113 0 100 280 1 181 4.84e-38 137
Msa0215800 MtrunA17_Chr8g0364751 44.156 154 86 0 323 476 13 166 2.26e-33 124
Msa0215800 MtrunA17_Chr6g0487091 27.920 351 221 6 145 476 46 383 4.77e-32 127
Msa0215800 MtrunA17_Chr6g0460521 39.394 198 120 0 279 476 1 198 9.71e-31 119
Msa0215800 MtrunA17_Chr6g0483221 43.709 151 79 2 329 476 6 153 1.73e-29 114
Msa0215800 MtrunA17_Chr5g0398571 32.178 202 137 0 281 482 85 286 5.30e-28 113
Msa0215800 MtrunA17_Chr6g0483261 40.541 148 88 0 329 476 6 153 3.36e-25 102
Msa0215800 MtrunA17_Chr6g0460531 29.707 239 165 2 43 280 24 260 2.29e-23 99.4
Msa0215800 MtrunA17_Chr5g0442311 26.257 179 132 0 102 280 1 179 3.28e-18 82.4
Msa0215800 MtrunA17_Chr5g0398551 41.176 85 50 0 38 122 38 122 1.85e-14 70.5
Msa0215800 MtrunA17_Chr7g0254491 35.238 105 66 1 25 129 14 116 2.33e-14 69.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0215800 AT3G23560.1 58.985 473 191 2 9 480 5 475 0.0 578
Msa0215800 AT3G23550.1 59.740 462 186 0 17 478 4 465 0.0 577
Msa0215800 AT3G23560.2 58.209 402 165 2 9 409 5 404 5.31e-168 480
Msa0215800 AT2G34360.1 42.762 449 249 3 29 476 12 453 6.58e-116 350
Msa0215800 AT5G52450.1 44.240 434 242 0 43 476 25 458 1.58e-115 349
Msa0215800 AT1G73700.1 42.463 471 256 2 6 476 1 456 2.08e-114 345
Msa0215800 AT1G15150.1 38.696 460 277 2 20 474 2 461 2.52e-106 325
Msa0215800 AT1G66760.2 38.055 473 282 2 11 483 6 467 2.78e-106 325
Msa0215800 AT1G66760.1 38.412 466 276 2 11 476 6 460 5.28e-106 324
Msa0215800 AT1G15170.1 39.066 471 274 2 7 474 4 464 1.91e-102 315
Msa0215800 AT1G15160.1 37.691 459 283 1 21 476 5 463 1.22e-101 313
Msa0215800 AT2G04040.1 38.940 434 263 2 44 476 27 459 2.38e-100 310
Msa0215800 AT2G34360.2 38.170 448 229 1 29 476 12 411 7.17e-97 299
Msa0215800 AT3G21690.1 35.282 479 301 3 7 476 6 484 2.66e-96 300
Msa0215800 AT2G04080.1 36.866 434 272 2 44 476 27 459 2.18e-95 296
Msa0215800 AT2G04080.2 36.866 434 272 2 44 476 27 459 2.63e-95 296
Msa0215800 AT1G11670.1 36.721 433 274 0 44 476 50 482 5.24e-95 296
Msa0215800 AT2G04100.2 37.076 472 289 5 11 480 2 467 1.01e-94 295
Msa0215800 AT2G04100.1 37.045 467 287 4 11 476 2 462 1.03e-94 295
Msa0215800 AT2G04050.1 36.052 466 290 1 11 476 2 459 1.40e-94 295
Msa0215800 AT2G04070.1 37.188 441 261 3 44 476 27 459 1.77e-94 294
Msa0215800 AT1G15180.1 38.359 451 265 2 10 457 8 448 2.45e-94 294
Msa0215800 AT1G71140.1 36.591 440 269 3 42 476 24 458 5.59e-94 293
Msa0215800 AT2G04090.1 36.188 467 291 4 11 476 2 462 4.16e-91 286
Msa0215800 AT1G61890.1 35.402 435 281 0 42 476 45 479 8.87e-91 286
Msa0215800 AT1G61890.2 34.061 458 300 1 21 476 22 479 1.46e-90 285
Msa0215800 AT4G21903.1 37.685 406 252 1 71 476 80 484 3.75e-90 284
Msa0215800 AT4G21903.2 37.685 406 252 1 71 476 80 484 5.94e-90 284
Msa0215800 AT1G66780.1 35.990 414 265 0 63 476 54 467 2.60e-89 281
Msa0215800 AT3G59030.1 34.623 491 305 6 7 483 3 491 6.85e-89 281
Msa0215800 AT1G47530.1 35.991 464 292 3 13 476 8 466 1.09e-87 277
Msa0215800 AT4G21910.2 35.335 433 279 1 44 476 57 488 2.45e-87 277
Msa0215800 AT4G21910.4 35.335 433 279 1 44 476 57 488 2.45e-87 277
Msa0215800 AT1G23300.1 36.259 433 275 1 44 476 44 475 2.38e-86 275
Msa0215800 AT1G33090.1 36.717 463 286 2 14 476 12 467 2.93e-86 274
Msa0215800 AT4G21910.3 34.873 433 281 1 44 476 55 486 3.11e-86 274
Msa0215800 AT4G21910.1 34.873 433 281 1 44 476 55 486 3.11e-86 274
Msa0215800 AT1G33110.1 35.205 463 293 2 14 476 12 467 1.78e-85 271
Msa0215800 AT1G64820.1 34.240 441 282 2 40 476 25 461 4.66e-85 271
Msa0215800 AT1G66760.4 37.845 399 237 2 11 409 6 393 9.50e-85 266
Msa0215800 AT1G61890.3 35.381 407 263 0 42 448 45 451 7.91e-83 264
Msa0215800 AT1G15170.2 40.950 337 199 0 140 476 11 347 1.03e-82 260
Msa0215800 AT1G33100.1 35.619 452 290 1 25 476 14 464 1.69e-82 264
Msa0215800 AT3G26590.1 33.333 441 292 2 44 483 45 484 2.98e-82 263
Msa0215800 AT1G15150.2 40.290 345 205 1 140 483 11 355 3.25e-82 259
Msa0215800 AT4G21903.3 36.800 375 237 0 102 476 1 375 3.79e-82 260
Msa0215800 AT5G38030.1 33.411 431 286 1 44 474 45 474 1.49e-81 261
Msa0215800 AT1G12950.1 33.945 436 281 3 44 476 67 498 7.61e-81 260
Msa0215800 AT1G33080.1 34.475 467 298 3 10 476 9 467 1.11e-79 256
Msa0215800 AT1G33080.2 34.475 467 298 3 10 476 9 467 1.14e-79 256
Msa0215800 AT5G44050.1 33.895 475 303 4 3 476 8 472 1.48e-78 253
Msa0215800 AT4G00350.1 34.318 440 285 2 38 476 82 518 1.53e-78 255
Msa0215800 AT1G47530.2 36.800 375 236 1 102 476 1 374 7.61e-76 243
Msa0215800 AT3G26590.2 34.465 383 249 2 102 483 1 382 2.66e-74 239
Msa0215800 AT5G10420.1 35.337 416 264 2 44 457 38 450 2.51e-72 237
Msa0215800 AT2G38510.1 32.407 432 286 4 43 470 5 434 9.45e-71 233
Msa0215800 AT5G65380.1 31.635 471 313 4 7 476 7 469 1.03e-70 233
Msa0215800 AT1G66760.3 35.952 331 212 0 146 476 2 332 1.55e-68 223
Msa0215800 AT4G29140.1 30.963 436 295 2 42 474 54 486 2.63e-67 225
Msa0215800 AT5G19700.1 29.436 479 327 3 11 483 2 475 4.92e-66 221
Msa0215800 AT4G23030.1 34.101 434 278 4 42 470 30 460 7.33e-66 221
Msa0215800 AT5G17700.2 31.624 468 309 6 9 474 5 463 1.92e-64 217
Msa0215800 AT5G17700.1 31.624 468 309 6 9 474 5 463 1.92e-64 217
Msa0215800 AT4G25640.1 32.500 440 294 2 37 476 28 464 2.61e-64 216
Msa0215800 AT4G25640.2 32.500 440 294 2 37 476 28 464 3.10e-64 216
Msa0215800 AT5G52050.1 29.474 475 312 5 6 470 7 468 1.03e-63 215
Msa0215800 AT1G33110.2 33.995 403 258 3 9 410 6 401 2.20e-63 211
Msa0215800 AT1G58340.1 30.913 427 294 1 30 455 43 469 4.30e-63 214
Msa0215800 AT3G03620.2 31.155 459 305 5 19 474 16 466 1.03e-61 209
Msa0215800 AT3G03620.1 31.155 459 305 5 19 474 16 466 1.03e-61 209
Msa0215800 AT1G71870.1 28.696 460 310 3 42 483 22 481 2.00e-61 209
Msa0215800 AT3G59030.2 31.731 416 269 5 7 409 3 416 4.39e-61 206
Msa0215800 AT5G49130.1 31.042 451 293 5 42 476 24 472 1.08e-60 207
Msa0215800 AT4G25640.3 32.353 408 273 2 37 444 28 432 1.15e-59 203
Msa0215800 AT4G22790.1 30.108 465 316 5 19 476 2 464 5.85e-55 191
Msa0215800 AT1G15180.2 38.519 270 166 0 140 409 11 280 6.41e-55 189
Msa0215800 AT5G17700.3 30.521 403 269 6 9 409 5 398 2.32e-49 174
Msa0215800 AT2G04066.1 35.556 135 79 1 342 476 28 154 3.43e-20 88.2

Find 113 sgRNAs with CRISPR-Local

Find 460 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACCATTTGTCCTCCATTTC+TGG 0.007321 2_1:-61307496 None:intergenic
GCAATTCAAAATAAATTATT+TGG 0.148973 2_1:-61306958 None:intergenic
CTATGATGATGTAGGGTTTA+TGG 0.149157 2_1:+61312220 Msa0215800:intron
GTGCTACTCTTGCTAATTCT+TGG 0.196457 2_1:+61307659 Msa0215800:CDS
GTATTGGGCTTTCGAAATTT+TGG 0.223515 2_1:+61311069 Msa0215800:CDS
TAAGACCAATTTGCATTATA+AGG 0.233144 2_1:+61311861 Msa0215800:CDS
ATTGCATGTTTAGCTCTTTC+AGG 0.235007 2_1:-61311462 None:intergenic
GCAAACTTATGTTTGATAAT+AGG 0.247196 2_1:-61311582 None:intergenic
CACAAGGATTTCCAATGAAT+TGG 0.272145 2_1:+61311428 Msa0215800:CDS
ATTGCTTACATGATCACTTA+TGG 0.287008 2_1:+61311248 Msa0215800:CDS
CAATTTCATTGATTGCAATA+TGG 0.290681 2_1:+61311128 Msa0215800:CDS
TTATGCAAGTTTGGAGTATT+GGG 0.298247 2_1:+61311054 Msa0215800:intron
TGTGGCCTAGTGTGTCAAAT+TGG 0.300864 2_1:+61312255 Msa0215800:CDS
TAGGGCAGATGAAAATTTAT+TGG 0.302483 2_1:+61306878 Msa0215800:five_prime_UTR
TTGCATATGGATTTGTTCAT+TGG 0.305216 2_1:+61310288 Msa0215800:CDS
ACTATGGATATCTATGATAT+TGG 0.310139 2_1:+61310355 Msa0215800:CDS
GATATTCAGTTTAGTCCATT+TGG 0.317780 2_1:-61312304 None:intergenic
TCTGTCCAAGGTGTCTTATC+AGG 0.328815 2_1:+61311645 Msa0215800:CDS
TTGGTTTCTGTCATGCTTGT+TGG 0.351093 2_1:+61307610 Msa0215800:CDS
TTGCAACTTCTATTTCACTA+TGG 0.356695 2_1:+61310339 Msa0215800:CDS
CTGTACCCTATCATTCTTGT+TGG 0.356729 2_1:-61306929 None:intergenic
CAATCATTATATCAATTGTT+TGG 0.358665 2_1:+61310066 Msa0215800:CDS
ACAAAACACAAGACCAGAAA+TGG 0.359995 2_1:+61307483 Msa0215800:CDS
CTGCCAACAACTCATGATAA+TGG 0.361188 2_1:+61307457 Msa0215800:CDS
ACAAGGATTTCCAATGAATT+GGG 0.362220 2_1:+61311429 Msa0215800:CDS
TGATACCTTATAATGCAAAT+TGG 0.372077 2_1:-61311866 None:intergenic
TTATGGATTGGTCTAATTTG+TGG 0.372381 2_1:+61312237 Msa0215800:CDS
GAAATTGTTATTTGTGAGTC+AGG 0.374296 2_1:-61311112 None:intergenic
TTGGACAGAATCTAGTAGTA+TGG 0.375092 2_1:-61311631 None:intergenic
CTTGGTGAGCTTCAGTTAGC+TGG 0.379613 2_1:+61307637 Msa0215800:CDS
ATTATGCAAGTTTGGAGTAT+TGG 0.381254 2_1:+61311053 Msa0215800:intron
ACACTCTGTGGACAAGGATT+TGG 0.381964 2_1:+61309978 Msa0215800:CDS
CATAATGCAGGGGTGGTTAG+AGG 0.384287 2_1:+61311754 Msa0215800:intron
TTGTCTTAGGTTGGTTTAAG+TGG 0.395039 2_1:+61309945 Msa0215800:intron
AAATCCAAGGAGACATGAAA+TGG 0.395733 2_1:-61311839 None:intergenic
GTTCATGTTGGGATTGCATA+TGG 0.402339 2_1:+61310275 Msa0215800:CDS
TACCAGCATTGGTTCATGTT+GGG 0.409517 2_1:+61310264 Msa0215800:CDS
TTACCCATTTCATGTCTCCT+TGG 0.412363 2_1:+61311835 Msa0215800:CDS
CTAAAGCTGTCTGTCCTCCT+TGG 0.415938 2_1:+61311495 Msa0215800:CDS
AATTCTTGGTTTAGTGTCAC+TGG 0.416494 2_1:+61307673 Msa0215800:CDS
TGAAAACATGAGTTGTTGTT+TGG 0.419197 2_1:-61307545 None:intergenic
TGGGACCCAACAAGAATGAT+AGG 0.419606 2_1:+61306923 Msa0215800:five_prime_UTR
GCAGGGGTGGTTAGAGGATG+TGG 0.439484 2_1:+61311760 Msa0215800:intron
GTCATGCTTGTTGGTCACCT+TGG 0.441677 2_1:+61307619 Msa0215800:CDS
TGTACCCTATCATTCTTGTT+GGG 0.441968 2_1:-61306928 None:intergenic
TGTCACTGGTGTAGCAGTTA+TGG 0.450952 2_1:+61307687 Msa0215800:CDS
CAAATGGTGGAACAAAATCT+TGG 0.453309 2_1:+61307510 Msa0215800:CDS
TTTCCATTATCATGAGTTGT+TGG 0.465756 2_1:-61307460 None:intergenic
GACCAGAAATGGAGGACAAA+TGG 0.466040 2_1:+61307494 Msa0215800:CDS
GTTGTTATACAGCAATAAGT+TGG 0.467334 2_1:-61312345 None:intergenic
CAAAGAAGTTTGAGAATACA+TGG 0.472713 2_1:+61310399 Msa0215800:CDS
TTCTAGCAATGTCTGGTGAT+TGG 0.478680 2_1:-61310121 None:intergenic
AAACTAGCTCTTCCTTCTGC+AGG 0.494520 2_1:+61310467 Msa0215800:CDS
TTCCTTCTGCAGGAATGGTA+TGG 0.496185 2_1:+61310477 Msa0215800:CDS
ATGGACTAAACTGAATATCT+CGG 0.497360 2_1:+61312308 Msa0215800:CDS
TGGATATCTATGATATTGGT+AGG 0.501013 2_1:+61310359 Msa0215800:CDS
TGAGTTGTTGGCAGTAATAG+AGG 0.501704 2_1:-61307448 None:intergenic
ACTTTCAGCTATACCAGCAT+TGG 0.502789 2_1:+61310253 Msa0215800:CDS
TGCAAAGGAATATCACATGC+TGG 0.508646 2_1:+61310001 Msa0215800:CDS
AGCTCTTCCTTCTGCAGGAA+TGG 0.510077 2_1:+61310472 Msa0215800:CDS
GTGGCCTAGTGTGTCAAATT+GGG 0.511399 2_1:+61312256 Msa0215800:CDS
GAAGCTGTTCTAGCAATGTC+TGG 0.513096 2_1:-61310128 None:intergenic
AGTGAAATAGAAGTTGCAAC+TGG 0.517295 2_1:-61310335 None:intergenic
AGGATGTGGTTGGCAGCACT+TGG 0.524967 2_1:+61311774 Msa0215800:CDS
CATGTTTAGCTCTTTCAGGA+TGG 0.526642 2_1:-61311458 None:intergenic
CTAGAAACACTCTGTGGACA+AGG 0.528099 2_1:+61309972 Msa0215800:CDS
ATCCCAACATGAACCAATGC+TGG 0.529182 2_1:-61310266 None:intergenic
TGGACTAAACTGAATATCTC+GGG 0.533874 2_1:+61312309 Msa0215800:CDS
ACGCTATATGCAAATAATCC+TGG 0.537941 2_1:-61310173 None:intergenic
GCGTCTTGCAAAACTTGTTG+AGG 0.540279 2_1:+61310192 Msa0215800:CDS
TCAAAACAAAACAGAATCCA+AGG 0.547423 2_1:-61311512 None:intergenic
GCAAATTGGTCTTAAATCCA+AGG 0.548068 2_1:-61311852 None:intergenic
TGGACAAGTCTGAATTTCAA+AGG 0.548674 2_1:+61310308 Msa0215800:CDS
TATATGAAGTTTCTTATACC+AGG 0.554707 2_1:+61310155 Msa0215800:CDS
AATCCAAGGAGACATGAAAT+GGG 0.556157 2_1:-61311838 None:intergenic
ATGATGTAGGGTTTATGGAT+TGG 0.565269 2_1:+61312225 Msa0215800:intron
AATCATAACAGAACACATGA+AGG 0.569553 2_1:+61307354 Msa0215800:five_prime_UTR
ATACCAGCATTGGTTCATGT+TGG 0.571685 2_1:+61310263 Msa0215800:CDS
GGGTGGTTAGAGGATGTGGT+TGG 0.574146 2_1:+61311764 Msa0215800:CDS
GCAAAGGAATATCACATGCT+GGG 0.577298 2_1:+61310002 Msa0215800:CDS
GGACTGAATATGTATGTGTT+GGG 0.579811 2_1:+61312381 Msa0215800:three_prime_UTR
TACCATACCATTCCTGCAGA+AGG 0.580379 2_1:-61310479 None:intergenic
CAAGGATTTCCAATGAATTG+GGG 0.583001 2_1:+61311430 Msa0215800:CDS
AAGTTTGAGAATACATGGAG+AGG 0.586144 2_1:+61310404 Msa0215800:CDS
ATATACTAATAGCTGCCACT+TGG 0.586541 2_1:-61312406 None:intergenic
GAGAACGCATATTGTTGCAA+AGG 0.590258 2_1:+61315310 Msa0215800:three_prime_UTR
ACAATCTGTAGTAAAGCCAC+TGG 0.591091 2_1:+61310226 Msa0215800:CDS
AGGACTGAATATGTATGTGT+TGG 0.596168 2_1:+61312380 Msa0215800:three_prime_UTR
ATACTACTAGATTCTGTCCA+AGG 0.600992 2_1:+61311633 Msa0215800:CDS
GGGACCCAACAAGAATGATA+GGG 0.602375 2_1:+61306924 Msa0215800:five_prime_UTR
TCAAACCTGATAAGACACCT+TGG 0.605007 2_1:-61311650 None:intergenic
TTTGTCAATAAAGTTGCGTG+AGG 0.605601 2_1:+61306835 Msa0215800:five_prime_UTR
ATGCTGGGAATTTATCTACA+AGG 0.607996 2_1:+61310017 Msa0215800:CDS
CAGAAATGGAGGACAAATGG+TGG 0.611520 2_1:+61307497 Msa0215800:CDS
TGGACAAGGATTTGGTGCAA+AGG 0.616863 2_1:+61309986 Msa0215800:CDS
GTGGAACAAAATCTTGGACA+TGG 0.619014 2_1:+61307516 Msa0215800:CDS
AAACACAAGACCAGAAATGG+AGG 0.620372 2_1:+61307486 Msa0215800:CDS
ATGGTCTTAGTGCAGCTGCA+AGG 0.630564 2_1:+61311267 Msa0215800:CDS
CAATGTCTGGTGATTGGTGA+AGG 0.631557 2_1:-61310115 None:intergenic
CAGCAGCTCATATAAATGCG+TGG 0.641111 2_1:+61315182 Msa0215800:intron
AGTATGGAAATAGCAAGCAA+AGG 0.641984 2_1:-61311615 None:intergenic
GCAGCAAGTATCATTTCAGA+CGG 0.643990 2_1:+61307415 Msa0215800:CDS
GTGTCCCAATTTGACACACT+AGG 0.649634 2_1:-61312260 None:intergenic
AAGGATTTCCAATGAATTGG+GGG 0.656984 2_1:+61311431 Msa0215800:CDS
ACAAGTCTGAATTTCAAAGG+TGG 0.658385 2_1:+61310311 Msa0215800:CDS
AAGATAGTTCAAAATTCACA+TGG 0.684402 2_1:+61307393 Msa0215800:exon
ATAACAACTGAACTATACGT+AGG 0.698814 2_1:+61312360 Msa0215800:three_prime_UTR
ATAGCTGAAAGTATAACCAG+TGG 0.708951 2_1:-61310242 None:intergenic
CAGCTAACTGAAGCTCACCA+AGG 0.723214 2_1:-61307636 None:intergenic
GAACAAAATCTTGGACATGG+AGG 0.742594 2_1:+61307519 Msa0215800:CDS
GGTGCACTAGAAACACTCTG+TGG 0.762528 2_1:+61309966 Msa0215800:CDS
AAACAAAACAGAATCCAAGG+AGG 0.770094 2_1:-61311509 None:intergenic
TGTATGTGTTGGGAACCAAG+TGG 0.851953 2_1:+61312391 Msa0215800:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATTATAATAAAGAATTG+AGG - chr2_1:61308037-61308056 None:intergenic 10.0%
!!! ATAAACTTTTTCTTATAATA+AGG - chr2_1:61308260-61308279 None:intergenic 10.0%
!! AAAATATTATACTCTATAAT+GGG - chr2_1:61308573-61308592 None:intergenic 10.0%
!! ATTTATTTCATTATAAAAAG+TGG - chr2_1:61308707-61308726 None:intergenic 10.0%
!!! AATAATTTTTAAAAATGAGA+TGG + chr2_1:61313601-61313620 Msa0215800:intron 10.0%
!! GCAATTCAAAATAAATTATT+TGG - chr2_1:61306961-61306980 None:intergenic 15.0%
!! AATAAAAAATGAGAAAAACA+AGG - chr2_1:61307060-61307079 None:intergenic 15.0%
!!! TTGTTTTTCTCATTTTTTAT+TGG + chr2_1:61307059-61307078 Msa0215800:intron 15.0%
!! AATAAGTTTGTAAAAATCAT+TGG - chr2_1:61307574-61307593 None:intergenic 15.0%
!!! ATTTTATTACTTGATTACTT+TGG + chr2_1:61307591-61307610 Msa0215800:CDS 15.0%
!! GCATAAACATTTATATTTAT+TGG - chr2_1:61307936-61307955 None:intergenic 15.0%
!!! TTGATTCTTATTTTTTTGTA+GGG + chr2_1:61308441-61308460 Msa0215800:intron 15.0%
!!! TATTTAATATGGTGTTAAAT+AGG - chr2_1:61308545-61308564 None:intergenic 15.0%
!! TATTTAACACCATATTAAAT+AGG + chr2_1:61308544-61308563 Msa0215800:intron 15.0%
!! AAATATTATACTCTATAATG+GGG - chr2_1:61308572-61308591 None:intergenic 15.0%
!! CAAAATATTATACTCTATAA+TGG - chr2_1:61308574-61308593 None:intergenic 15.0%
!!! CATTATAGAGTATAATATTT+TGG + chr2_1:61308572-61308591 Msa0215800:intron 15.0%
!!! AGTAATTTCATTTGAATTTT+TGG + chr2_1:61308775-61308794 Msa0215800:intron 15.0%
!! TCTTATATTTGATTCTTAAA+TGG - chr2_1:61308861-61308880 None:intergenic 15.0%
!! ATAATCAATTGAAGTAAATT+TGG + chr2_1:61308995-61309014 Msa0215800:intron 15.0%
!! TAATCAATTGAAGTAAATTT+GGG + chr2_1:61308996-61309015 Msa0215800:intron 15.0%
!! TAATAAAACAAAAATTAGTG+AGG - chr2_1:61309303-61309322 None:intergenic 15.0%
!!! AAATTTGTTTATATGAGAAT+TGG + chr2_1:61309605-61309624 Msa0215800:intron 15.0%
!!! ATTGATCATTTAAGTTATTT+TGG + chr2_1:61310721-61310740 Msa0215800:intron 15.0%
!! ATAGTAAGATTCATAATATA+AGG - chr2_1:61311022-61311041 None:intergenic 15.0%
!! TTTATTGACAAAAAAATCTT+AGG + chr2_1:61311716-61311735 Msa0215800:intron 15.0%
!! TTATTGACAAAAAAATCTTA+GGG + chr2_1:61311717-61311736 Msa0215800:intron 15.0%
!!! TTTAGTAAAAATTCTCTTTT+CGG - chr2_1:61311970-61311989 None:intergenic 15.0%
!! CATAAAAATTAGTTCAATTA+AGG + chr2_1:61312118-61312137 Msa0215800:intron 15.0%
!!! TTTTTATTGGTCAAAAACAA+TGG + chr2_1:61307072-61307091 Msa0215800:intron 20.0%
!!! TCTTTTCTTATATTTAAGAC+CGG + chr2_1:61307313-61307332 Msa0215800:intron 20.0%
!! CATTGAATAACTAATGTATT+TGG - chr2_1:61308329-61308348 None:intergenic 20.0%
!!! CTTGATTCTTATTTTTTTGT+AGG + chr2_1:61308440-61308459 Msa0215800:intron 20.0%
!!! ATTTCATTTGAATTTTTGGT+TGG + chr2_1:61308779-61308798 Msa0215800:intron 20.0%
!!! ATGTTCACATACTTATTTTA+CGG - chr2_1:61308831-61308850 None:intergenic 20.0%
!! ATTTCAAAGGAGATTATTTA+TGG - chr2_1:61308912-61308931 None:intergenic 20.0%
!! TTTCGTGCATAATTTAATAA+AGG + chr2_1:61309074-61309093 Msa0215800:intron 20.0%
!! TTATATTAAAGAATGCTCTA+AGG + chr2_1:61309098-61309117 Msa0215800:intron 20.0%
!! TACTAGGAAAAGAAAAATTA+GGG + chr2_1:61309173-61309192 Msa0215800:intron 20.0%
!! ATGATCAACATATGTAAAAA+TGG - chr2_1:61309382-61309401 None:intergenic 20.0%
!! AAAACAACAAAAACAAAATG+GGG - chr2_1:61309571-61309590 None:intergenic 20.0%
!! CAAAACAACAAAAACAAAAT+GGG - chr2_1:61309572-61309591 None:intergenic 20.0%
!! ACAAAACAACAAAAACAAAA+TGG - chr2_1:61309573-61309592 None:intergenic 20.0%
!! AAAGAACATAGTTTAATCTT+GGG - chr2_1:61309912-61309931 None:intergenic 20.0%
!! CAATCATTATATCAATTGTT+TGG + chr2_1:61310066-61310085 Msa0215800:CDS 20.0%
!! AAATGAACAAATAAAGTGAA+AGG - chr2_1:61310519-61310538 None:intergenic 20.0%
!!! ACAAAGTTTGCTAAATTATT+AGG + chr2_1:61310558-61310577 Msa0215800:intron 20.0%
!!! TATATTAGACTTTTGATTGT+TGG + chr2_1:61310655-61310674 Msa0215800:intron 20.0%
!!! ATTGATCCTTTAAGTTATTT+TGG - chr2_1:61310938-61310957 None:intergenic 20.0%
!!! TATTTTGTATTATGCAAGTT+TGG + chr2_1:61311045-61311064 Msa0215800:intron 20.0%
!! TATTGACAAAAAAATCTTAG+GGG + chr2_1:61311718-61311737 Msa0215800:intron 20.0%
!!! TAAACAAAAATTCTCTTTTC+AGG - chr2_1:61312064-61312083 None:intergenic 20.0%
!!! AGAGAAAATTTAATTTTCTC+AGG - chr2_1:61312605-61312624 None:intergenic 20.0%
!! AGAAAAAAAATAGAAGGAAA+AGG - chr2_1:61312643-61312662 None:intergenic 20.0%
!! TGAAAGAGAAAAAAAATAGA+AGG - chr2_1:61312649-61312668 None:intergenic 20.0%
!! ATCAATGAAATTTGATGAAA+TGG - chr2_1:61312750-61312769 None:intergenic 20.0%
!!! TTCATCAAATTTCATTGATT+TGG + chr2_1:61312751-61312770 Msa0215800:intron 20.0%
!!! TTAGATATGGTCATTTTTTT+TGG + chr2_1:61313813-61313832 Msa0215800:intron 20.0%
!!! ATTATTGGTTAACATTGTTT+TGG + chr2_1:61313873-61313892 Msa0215800:intron 20.0%
!!! TTATTGGTTAACATTGTTTT+GGG + chr2_1:61313874-61313893 Msa0215800:intron 20.0%
!!! AAGTGAATTTTTTGGGTATT+GGG + chr2_1:61306904-61306923 Msa0215800:five_prime_UTR 25.0%
!!! TCTTTTCTTATATTTGAGAC+CGG - chr2_1:61307204-61307223 None:intergenic 25.0%
! CATTGAATAGTTAATGTATC+TGG + chr2_1:61307239-61307258 Msa0215800:intron 25.0%
! AAGATAGTTCAAAATTCACA+TGG + chr2_1:61307393-61307412 Msa0215800:exon 25.0%
!!! TTGCTTTAAAAAGACTTAAG+AGG + chr2_1:61308182-61308201 Msa0215800:intron 25.0%
! TCATAACGCTATACTTTATT+TGG - chr2_1:61308386-61308405 None:intergenic 25.0%
!!! AATTTTTGGTTGGAGAAAAT+TGG + chr2_1:61308789-61308808 Msa0215800:intron 25.0%
! AAATATAAGATGCTATGTTG+TGG + chr2_1:61308871-61308890 Msa0215800:intron 25.0%
! AAGTTGTTGCAAACATTAAT+GGG - chr2_1:61308946-61308965 None:intergenic 25.0%
! TACTTTCTTAAATCACTACT+AGG + chr2_1:61309157-61309176 Msa0215800:intron 25.0%
! CTACTAGGAAAAGAAAAATT+AGG + chr2_1:61309172-61309191 Msa0215800:intron 25.0%
! GTATGTTCATCATAAACTTT+AGG + chr2_1:61309355-61309374 Msa0215800:intron 25.0%
!! CATATAAACAAATTTTGCAG+AGG - chr2_1:61309600-61309619 None:intergenic 25.0%
!!! GTAGTTGCAGTTTATTTTAT+GGG - chr2_1:61309696-61309715 None:intergenic 25.0%
!!! TGTAGTTGCAGTTTATTTTA+TGG - chr2_1:61309697-61309716 None:intergenic 25.0%
! AGTTTAACCTTGTAAATTCA+AGG + chr2_1:61309742-61309761 Msa0215800:intron 25.0%
! GTCTGAATATGTAAAATTAG+AGG + chr2_1:61309843-61309862 Msa0215800:intron 25.0%
! CAAAGAACATAGTTTAATCT+TGG - chr2_1:61309913-61309932 None:intergenic 25.0%
! TATATGAAGTTTCTTATACC+AGG + chr2_1:61310155-61310174 Msa0215800:CDS 25.0%
! ACTATGGATATCTATGATAT+TGG + chr2_1:61310355-61310374 Msa0215800:CDS 25.0%
!! ATTGTTGGCTAAATTACATA+TGG + chr2_1:61310670-61310689 Msa0215800:intron 25.0%
!! TTGTTGGCTAAATTACATAT+GGG + chr2_1:61310671-61310690 Msa0215800:intron 25.0%
! GAAAACGTTTACAAACTTAA+AGG - chr2_1:61310840-61310859 None:intergenic 25.0%
!! ACATAAGTCATTTAAGTTTG+AGG - chr2_1:61310851-61310870 None:intergenic 25.0%
!! CAATTTCATTGATTGCAATA+TGG + chr2_1:61311128-61311147 Msa0215800:CDS 25.0%
!!! TTGAACTTTTTTATAGCACA+AGG + chr2_1:61311412-61311431 Msa0215800:intron 25.0%
!!! TTTGTTTTGATGCTTTTGTT+TGG + chr2_1:61311525-61311544 Msa0215800:CDS 25.0%
!!! TTTTGTTTGGTCATGATATA+TGG + chr2_1:61311538-61311557 Msa0215800:CDS 25.0%
!! GCAAACTTATGTTTGATAAT+AGG - chr2_1:61311585-61311604 None:intergenic 25.0%
! TAAACCAATGAGATAAAAAG+TGG - chr2_1:61311818-61311837 None:intergenic 25.0%
! TAAGACCAATTTGCATTATA+AGG + chr2_1:61311861-61311880 Msa0215800:CDS 25.0%
! TGATACCTTATAATGCAAAT+TGG - chr2_1:61311869-61311888 None:intergenic 25.0%
!! TAATAGTGATAAGAGTATGT+AGG + chr2_1:61312084-61312103 Msa0215800:intron 25.0%
!!! AATTTTGTCTATGATGATGT+AGG + chr2_1:61312212-61312231 Msa0215800:intron 25.0%
!!! ATTTTGTCTATGATGATGTA+GGG + chr2_1:61312213-61312232 Msa0215800:intron 25.0%
! ATAGAATCAAGAAGATGAAT+CGG - chr2_1:61312881-61312900 None:intergenic 25.0%
!!! AGTTTATCAGCTTTATTTGA+AGG + chr2_1:61313383-61313402 Msa0215800:intron 25.0%
!!! ATGTGTTCTGTTTAGTTTTT+TGG + chr2_1:61313522-61313541 Msa0215800:intron 25.0%
! ATTCAGAATTGGATTACTTA+TGG + chr2_1:61313786-61313805 Msa0215800:intron 25.0%
!!! TGTTTTTCGTTTTGAAGAAT+TGG + chr2_1:61313956-61313975 Msa0215800:intron 25.0%
! TCTTGCAAGAAAATATGATA+TGG - chr2_1:61314086-61314105 None:intergenic 25.0%
!!! TTTTTGCTTGTTTTTCTGTT+TGG + chr2_1:61314416-61314435 Msa0215800:intron 25.0%
!!! TTTTGGTTTAGCTTCATTAT+TGG + chr2_1:61314457-61314476 Msa0215800:intron 25.0%
!!! TGGATATCATCATTGATTTT+TGG + chr2_1:61314738-61314757 Msa0215800:intron 25.0%
! AATATCAACAAAGCCTTAAA+AGG - chr2_1:61314834-61314853 None:intergenic 25.0%
! ACTTGAAATGAGAAAATACA+AGG - chr2_1:61314996-61315015 None:intergenic 25.0%
!!! TGTATTTTCTCATTTCAAGT+TGG + chr2_1:61314996-61315015 Msa0215800:intron 25.0%
!!! TATCCAACTACTTTTTCAGT+AGG + chr2_1:61306859-61306878 Msa0215800:five_prime_UTR 30.0%
!!! ATCCAACTACTTTTTCAGTA+GGG + chr2_1:61306860-61306879 Msa0215800:five_prime_UTR 30.0%
TAGGGCAGATGAAAATTTAT+TGG + chr2_1:61306878-61306897 Msa0215800:five_prime_UTR 30.0%
!!! ATTGGTGCAAGTGAATTTTT+TGG + chr2_1:61306896-61306915 Msa0215800:five_prime_UTR 30.0%
!!! TTGGTGCAAGTGAATTTTTT+GGG + chr2_1:61306897-61306916 Msa0215800:five_prime_UTR 30.0%
!!! CAAGTGAATTTTTTGGGTAT+TGG + chr2_1:61306903-61306922 Msa0215800:five_prime_UTR 30.0%
TCAACAAAGTTGTCATCAAA+TGG - chr2_1:61307034-61307053 None:intergenic 30.0%
AAAACAATGGAGAGAGAAAA+AGG + chr2_1:61307085-61307104 Msa0215800:intron 30.0%
GAGAGAAAGTTGTCAAAAAA+TGG + chr2_1:61307141-61307160 Msa0215800:intron 30.0%
! TTTCTTATATTTAAGACCGG+AGG + chr2_1:61307316-61307335 Msa0215800:intron 30.0%
AATCATAACAGAACACATGA+AGG + chr2_1:61307354-61307373 Msa0215800:five_prime_UTR 30.0%
TTTCCATTATCATGAGTTGT+TGG - chr2_1:61307463-61307482 None:intergenic 30.0%
! TGAAAACATGAGTTGTTGTT+TGG - chr2_1:61307548-61307567 None:intergenic 30.0%
TCATTTCCATAGATGTTGAT+AGG + chr2_1:61307746-61307765 Msa0215800:intron 30.0%
ATTGTTCCTATCAACATCTA+TGG - chr2_1:61307755-61307774 None:intergenic 30.0%
CAAGTTGTTGCAAACATTAA+TGG - chr2_1:61308947-61308966 None:intergenic 30.0%
! TTTGTTACCATTGATGCTTT+TGG - chr2_1:61308974-61308993 None:intergenic 30.0%
!! TTGGGAAAGTACTAGTAAAT+TGG + chr2_1:61309014-61309033 Msa0215800:intron 30.0%
!! TGGGAAAGTACTAGTAAATT+GGG + chr2_1:61309015-61309034 Msa0215800:intron 30.0%
TAGGAAAAGAAAAATTAGGG+AGG + chr2_1:61309176-61309195 Msa0215800:intron 30.0%
AGGAAAAGAAAAATTAGGGA+GGG + chr2_1:61309177-61309196 Msa0215800:intron 30.0%
AAAATCCCTCACAAATTCTT+TGG + chr2_1:61309219-61309238 Msa0215800:intron 30.0%
! TTGGTGGCAAAATTTAGTTA+AGG + chr2_1:61309238-61309257 Msa0215800:intron 30.0%
TAGTGAGGAAAATTTAGAGA+GGG - chr2_1:61309288-61309307 None:intergenic 30.0%
TTAGTGAGGAAAATTTAGAG+AGG - chr2_1:61309289-61309308 None:intergenic 30.0%
AAGTTTATGATGAACATACG+TGG - chr2_1:61309354-61309373 None:intergenic 30.0%
GTCATTTATTTCACGCAAAT+TGG + chr2_1:61309657-61309676 Msa0215800:intron 30.0%
ATTTATTTCACGCAAATTGG+AGG + chr2_1:61309660-61309679 Msa0215800:intron 30.0%
GTTCATACCTTGAATTTACA+AGG - chr2_1:61309752-61309771 None:intergenic 30.0%
ACTTTAAATTTCCTCGAACA+TGG + chr2_1:61309770-61309789 Msa0215800:intron 30.0%
!! TAATTTTTCAACCATGTTCG+AGG - chr2_1:61309784-61309803 None:intergenic 30.0%
! TTGCATATGGATTTGTTCAT+TGG + chr2_1:61310288-61310307 Msa0215800:CDS 30.0%
TTGCAACTTCTATTTCACTA+TGG + chr2_1:61310339-61310358 Msa0215800:CDS 30.0%
TGGATATCTATGATATTGGT+AGG + chr2_1:61310359-61310378 Msa0215800:CDS 30.0%
CAAAGAAGTTTGAGAATACA+TGG + chr2_1:61310399-61310418 Msa0215800:CDS 30.0%
!! AGTTTGCTAAATTATTAGGC+CGG + chr2_1:61310562-61310581 Msa0215800:intron 30.0%
AAATGTTGCTCAAAGTAAAC+CGG - chr2_1:61310584-61310603 None:intergenic 30.0%
! TGTTGGCTAAATTACATATG+GGG + chr2_1:61310672-61310691 Msa0215800:intron 30.0%
! TATGGGGTCATTTAAGTTTA+AGG + chr2_1:61310688-61310707 Msa0215800:intron 30.0%
!! ATCATCGTTTTTGTAACGTT+TGG - chr2_1:61310801-61310820 None:intergenic 30.0%
! GTTTGAGGTTTGTAACAAAT+TGG - chr2_1:61310896-61310915 None:intergenic 30.0%
GTGTGACCAAAATAACTTAA+AGG + chr2_1:61310929-61310948 Msa0215800:intron 30.0%
ACAAAGTCTAAATTACACCA+GGG - chr2_1:61310984-61311003 None:intergenic 30.0%
AACAAAGTCTAAATTACACC+AGG - chr2_1:61310985-61311004 None:intergenic 30.0%
! ATTATGCAAGTTTGGAGTAT+TGG + chr2_1:61311053-61311072 Msa0215800:intron 30.0%
! TTATGCAAGTTTGGAGTATT+GGG + chr2_1:61311054-61311073 Msa0215800:intron 30.0%
!!! GAAATTTTGGTTTTCTTAGC+TGG + chr2_1:61311082-61311101 Msa0215800:CDS 30.0%
!! GAAATTGTTATTTGTGAGTC+AGG - chr2_1:61311115-61311134 None:intergenic 30.0%
! TCATTGATTGCAATATGGTA+TGG + chr2_1:61311133-61311152 Msa0215800:intron 30.0%
ATTGCTTACATGATCACTTA+TGG + chr2_1:61311248-61311267 Msa0215800:CDS 30.0%
ACAAGGATTTCCAATGAATT+GGG + chr2_1:61311429-61311448 Msa0215800:CDS 30.0%
TCAAAACAAAACAGAATCCA+AGG - chr2_1:61311515-61311534 None:intergenic 30.0%
AAAAATGTCTTGCATAATGC+AGG + chr2_1:61311742-61311761 Msa0215800:intron 30.0%
AAAATGTCTTGCATAATGCA+GGG + chr2_1:61311743-61311762 Msa0215800:intron 30.0%
!! TTATGGATTGGTCTAATTTG+TGG + chr2_1:61312237-61312256 Msa0215800:CDS 30.0%
GATATTCAGTTTAGTCCATT+TGG - chr2_1:61312307-61312326 None:intergenic 30.0%
! ATGGACTAAACTGAATATCT+CGG + chr2_1:61312308-61312327 Msa0215800:CDS 30.0%
GTTGTTATACAGCAATAAGT+TGG - chr2_1:61312348-61312367 None:intergenic 30.0%
ATAACAACTGAACTATACGT+AGG + chr2_1:61312360-61312379 Msa0215800:three_prime_UTR 30.0%
TGATGAAGTTATCCACTAAT+GGG - chr2_1:61312446-61312465 None:intergenic 30.0%
ATGATGAAGTTATCCACTAA+TGG - chr2_1:61312447-61312466 None:intergenic 30.0%
AAATGGTGATCAAGAAGAAA+AGG - chr2_1:61312733-61312752 None:intergenic 30.0%
CAGAAAGCAAGAAAACAAAT+CGG - chr2_1:61313069-61313088 None:intergenic 30.0%
TCATATTGCAAGAACAATGA+AGG - chr2_1:61313650-61313669 None:intergenic 30.0%
AAGCAAGATAACAAGCAATT+AGG - chr2_1:61313746-61313765 None:intergenic 30.0%
! CTTTTATGTTAGTTCAAGCA+TGG + chr2_1:61313763-61313782 Msa0215800:intron 30.0%
TACTTATGGTGTCTTAGATA+TGG + chr2_1:61313800-61313819 Msa0215800:intron 30.0%
!!! GGTCATTTTTTTTGGTATGT+TGG + chr2_1:61313821-61313840 Msa0215800:intron 30.0%
!! TTTTTGGTATGTTGGTATAC+TGG + chr2_1:61313829-61313848 Msa0215800:intron 30.0%
CAAAACGAAAAACAATGTAG+TGG - chr2_1:61313950-61313969 None:intergenic 30.0%
CAAGAAAATATGATATGGCA+AGG - chr2_1:61314081-61314100 None:intergenic 30.0%
AACTTCTATTCTCTCGTTAT+TGG + chr2_1:61314143-61314162 Msa0215800:intron 30.0%
ATGTGAATTAGTTGTGCATT+TGG + chr2_1:61314185-61314204 Msa0215800:intron 30.0%
!! TGCATATTGACTTATGTCAA+TGG + chr2_1:61314352-61314371 Msa0215800:intron 30.0%
! TGTTTGGAGACTATTTTCTT+TGG + chr2_1:61314432-61314451 Msa0215800:intron 30.0%
!!! GACTATTTTCTTTGGAGTTT+TGG + chr2_1:61314440-61314459 Msa0215800:intron 30.0%
!!! ATTATTGGAAGCATTGGTTT+TGG + chr2_1:61314472-61314491 Msa0215800:intron 30.0%
!! CAACATGGATTTGTTTTCTA+TGG + chr2_1:61314513-61314532 Msa0215800:intron 30.0%
!!! CTTTTTTATCTTTGGAACCT+TGG + chr2_1:61314619-61314638 Msa0215800:intron 30.0%
TTGTTGATATTTGCTTCTAC+CGG + chr2_1:61314843-61314862 Msa0215800:intron 30.0%
TTTGTCAATAAAGTTGCGTG+AGG + chr2_1:61306835-61306854 Msa0215800:five_prime_UTR 35.0%
TGTACCCTATCATTCTTGTT+GGG - chr2_1:61306931-61306950 None:intergenic 35.0%
! TTCTTATATTTGAGACCGGA+GGG - chr2_1:61307200-61307219 None:intergenic 35.0%
! TTTCTTATATTTGAGACCGG+AGG - chr2_1:61307201-61307220 None:intergenic 35.0%
! TTTGTTATGTACTACTCCTC+CGG - chr2_1:61307335-61307354 None:intergenic 35.0%
ACAAAACACAAGACCAGAAA+TGG + chr2_1:61307483-61307502 Msa0215800:CDS 35.0%
! CAAATGGTGGAACAAAATCT+TGG + chr2_1:61307510-61307529 Msa0215800:CDS 35.0%
AATTCTTGGTTTAGTGTCAC+TGG + chr2_1:61307673-61307692 Msa0215800:CDS 35.0%
! GTGTGTTCATTGATTAGACA+CGG + chr2_1:61307779-61307798 Msa0215800:intron 35.0%
CACGGACAATCAAAAACATA+TGG + chr2_1:61307797-61307816 Msa0215800:intron 35.0%
AAGTATAGCGTTATGATGTC+CGG + chr2_1:61308390-61308409 Msa0215800:intron 35.0%
! AAGCCTTTTATTCTACCAAG+TGG - chr2_1:61308418-61308437 None:intergenic 35.0%
AATGGGGAGCCTATTTAATA+TGG - chr2_1:61308556-61308575 None:intergenic 35.0%
ATGATGAACATACGTGGAAA+TGG - chr2_1:61309348-61309367 None:intergenic 35.0%
ATAAACTGCAACTACACAAG+AGG + chr2_1:61309701-61309720 Msa0215800:intron 35.0%
!! TTGTCTTAGGTTGGTTTAAG+TGG + chr2_1:61309945-61309964 Msa0215800:intron 35.0%
ATGCTGGGAATTTATCTACA+AGG + chr2_1:61310017-61310036 Msa0215800:CDS 35.0%
ACGCTATATGCAAATAATCC+TGG - chr2_1:61310176-61310195 None:intergenic 35.0%
! ATAGCTGAAAGTATAACCAG+TGG - chr2_1:61310245-61310264 None:intergenic 35.0%
TGGACAAGTCTGAATTTCAA+AGG + chr2_1:61310308-61310327 Msa0215800:CDS 35.0%
ACAAGTCTGAATTTCAAAGG+TGG + chr2_1:61310311-61310330 Msa0215800:CDS 35.0%
AGTGAAATAGAAGTTGCAAC+TGG - chr2_1:61310338-61310357 None:intergenic 35.0%
AAGTTTGAGAATACATGGAG+AGG + chr2_1:61310404-61310423 Msa0215800:CDS 35.0%
! TACATGGAGAGGATTTTCAA+TGG + chr2_1:61310415-61310434 Msa0215800:CDS 35.0%
! TGTAACGTTTGGTTCACATA+GGG - chr2_1:61310790-61310809 None:intergenic 35.0%
! TTGTAACGTTTGGTTCACAT+AGG - chr2_1:61310791-61310810 None:intergenic 35.0%
ACGTTACAAAAACGATGATG+TGG + chr2_1:61310802-61310821 Msa0215800:intron 35.0%
CAAAGTCTAAATTACACCAG+GGG - chr2_1:61310983-61311002 None:intergenic 35.0%
! GTATTGGGCTTTCGAAATTT+TGG + chr2_1:61311069-61311088 Msa0215800:CDS 35.0%
AACAGAATCCATTCCTTCAT+AGG + chr2_1:61311306-61311325 Msa0215800:intron 35.0%
ACAGAATCCATTCCTTCATA+GGG + chr2_1:61311307-61311326 Msa0215800:intron 35.0%
CAATAAAATGACCCCTATGA+AGG - chr2_1:61311322-61311341 None:intergenic 35.0%
!! CTTCATAGGGGTCATTTTAT+TGG + chr2_1:61311320-61311339 Msa0215800:intron 35.0%
CACAAGGATTTCCAATGAAT+TGG + chr2_1:61311428-61311447 Msa0215800:CDS 35.0%
CAAGGATTTCCAATGAATTG+GGG + chr2_1:61311430-61311449 Msa0215800:CDS 35.0%
AAGGATTTCCAATGAATTGG+GGG + chr2_1:61311431-61311450 Msa0215800:CDS 35.0%
!! ATTGCATGTTTAGCTCTTTC+AGG - chr2_1:61311465-61311484 None:intergenic 35.0%
AAACAAAACAGAATCCAAGG+AGG - chr2_1:61311512-61311531 None:intergenic 35.0%
AGTATGGAAATAGCAAGCAA+AGG - chr2_1:61311618-61311637 None:intergenic 35.0%
TTGGACAGAATCTAGTAGTA+TGG - chr2_1:61311634-61311653 None:intergenic 35.0%
ATACTACTAGATTCTGTCCA+AGG + chr2_1:61311633-61311652 Msa0215800:CDS 35.0%
GCTGAAGTTAAAAAGAGATG+AGG - chr2_1:61311679-61311698 None:intergenic 35.0%
AAATGTCTTGCATAATGCAG+GGG + chr2_1:61311744-61311763 Msa0215800:intron 35.0%
CAATGAGATAAAAAGTGGCA+AGG - chr2_1:61311813-61311832 None:intergenic 35.0%
!!! CTTGCCACTTTTTATCTCAT+TGG + chr2_1:61311811-61311830 Msa0215800:CDS 35.0%
AATCCAAGGAGACATGAAAT+GGG - chr2_1:61311841-61311860 None:intergenic 35.0%
AAATCCAAGGAGACATGAAA+TGG - chr2_1:61311842-61311861 None:intergenic 35.0%
!! GCAAATTGGTCTTAAATCCA+AGG - chr2_1:61311855-61311874 None:intergenic 35.0%
! CTATGATGATGTAGGGTTTA+TGG + chr2_1:61312220-61312239 Msa0215800:intron 35.0%
ATGATGTAGGGTTTATGGAT+TGG + chr2_1:61312225-61312244 Msa0215800:intron 35.0%
TGGACTAAACTGAATATCTC+GGG + chr2_1:61312309-61312328 Msa0215800:CDS 35.0%
AGGACTGAATATGTATGTGT+TGG + chr2_1:61312380-61312399 Msa0215800:three_prime_UTR 35.0%
GGACTGAATATGTATGTGTT+GGG + chr2_1:61312381-61312400 Msa0215800:three_prime_UTR 35.0%
ATATACTAATAGCTGCCACT+TGG - chr2_1:61312409-61312428 None:intergenic 35.0%
GATGAAGTTATCCACTAATG+GGG - chr2_1:61312445-61312464 None:intergenic 35.0%
GTTAGGAAACATGATATCCA+AGG - chr2_1:61312527-61312546 None:intergenic 35.0%
GGATATCATGTTTCCTAACA+TGG + chr2_1:61312528-61312547 Msa0215800:intron 35.0%
!! ATTAGCTCTGATACCATGTT+AGG - chr2_1:61312544-61312563 None:intergenic 35.0%
! ATTTTCTCAGGAAAATGCAG+CGG - chr2_1:61312593-61312612 None:intergenic 35.0%
!!! TTTTTTCGTCTTCGTCATTC+TGG + chr2_1:61312700-61312719 Msa0215800:intron 35.0%
AATTGTAATCGTGAAACCCT+AGG - chr2_1:61312853-61312872 None:intergenic 35.0%
ATCAAAAAAGCAATCGCAAC+TGG - chr2_1:61312986-61313005 None:intergenic 35.0%
!! CTGAATTTCTACGCTTTTTG+CGG + chr2_1:61313030-61313049 Msa0215800:intron 35.0%
AATTTGATCCACACGAATCA+AGG - chr2_1:61313093-61313112 None:intergenic 35.0%
CACGAAACAGGAATAGAATT+TGG - chr2_1:61313164-61313183 None:intergenic 35.0%
AATTAGAATCGCAAACCCTA+AGG - chr2_1:61313213-61313232 None:intergenic 35.0%
TTCATTCATATGCACACACA+AGG + chr2_1:61313556-61313575 Msa0215800:intron 35.0%
! TACCTACTGCTCATCAATTT+TGG + chr2_1:61313670-61313689 Msa0215800:intron 35.0%
GGATTGTCTTTGACATTCAT+TGG + chr2_1:61313694-61313713 Msa0215800:intron 35.0%
!! TGGTTTTCTTTGAAGAAGAG+TGG + chr2_1:61313714-61313733 Msa0215800:intron 35.0%
TTCAAGCATGGATTCAGAAT+TGG + chr2_1:61313775-61313794 Msa0215800:intron 35.0%
!!! GGTATACTGGTTCTATTTTG+AGG + chr2_1:61313842-61313861 Msa0215800:intron 35.0%
!!! ATACTGGTTCTATTTTGAGG+AGG + chr2_1:61313845-61313864 Msa0215800:intron 35.0%
TTTGAGGAGGCAGAAATTAT+TGG + chr2_1:61313858-61313877 Msa0215800:intron 35.0%
GAAACATGTGATTCTGTTTG+TGG + chr2_1:61314026-61314045 Msa0215800:intron 35.0%
AATATGATATGGCAAGGAAC+TGG - chr2_1:61314075-61314094 None:intergenic 35.0%
TTCATGAAACTACCAACAAG+AGG - chr2_1:61314109-61314128 None:intergenic 35.0%
!!! GTTATTGGTGATGTTTTCGT+TGG + chr2_1:61314158-61314177 Msa0215800:intron 35.0%
CAATCTTCAGAAAACACTTC+AGG - chr2_1:61314257-61314276 None:intergenic 35.0%
ACATGAGAAACCAAATACCA+AGG - chr2_1:61314300-61314319 None:intergenic 35.0%
GTTTCTCATGTTGCATTATC+TGG + chr2_1:61314309-61314328 Msa0215800:intron 35.0%
! AGCTTCATTATTGGAAGCAT+TGG + chr2_1:61314466-61314485 Msa0215800:intron 35.0%
TGTTGATGCATTCAAACCAT+AGG - chr2_1:61314498-61314517 None:intergenic 35.0%
ATGGTTTGAATGCATCAACA+TGG + chr2_1:61314498-61314517 Msa0215800:intron 35.0%
TGGTTTGAAGACAAATCACA+TGG + chr2_1:61314533-61314552 Msa0215800:intron 35.0%
!!! GCATTTGGTTTTTCTTGTCT+CGG + chr2_1:61314576-61314595 Msa0215800:intron 35.0%
!!! GGGCATCTCTTTTTTATCTT+TGG + chr2_1:61314611-61314630 Msa0215800:intron 35.0%
TTGAACAAACTTCACACCAA+AGG - chr2_1:61314663-61314682 None:intergenic 35.0%
! AGAAAAAGAAGTGCAAGGAA+GGG - chr2_1:61314716-61314735 None:intergenic 35.0%
! AAGAAAAAGAAGTGCAAGGA+AGG - chr2_1:61314717-61314736 None:intergenic 35.0%
! CCAAAAGAAAAAGAAGTGCA+AGG - chr2_1:61314721-61314740 None:intergenic 35.0%
! CCTTGCACTTCTTTTTCTTT+TGG + chr2_1:61314718-61314737 Msa0215800:intron 35.0%
TTGATGCTTCTTCCTTCAAT+TGG + chr2_1:61314885-61314904 Msa0215800:intron 35.0%
AAAATACAAGGAAAGATGCC+GGG - chr2_1:61314984-61315003 None:intergenic 35.0%
GAAAATACAAGGAAAGATGC+CGG - chr2_1:61314985-61315004 None:intergenic 35.0%
ACTTGTAATAACCCCATTAG+TGG + chr2_1:61315066-61315085 Msa0215800:intron 35.0%
CTTGTAATAACCCCATTAGT+GGG + chr2_1:61312432-61312451 Msa0215800:intron 35.0%
ATGAAGTTATCCCACTAATG+GGG - chr2_1:61315080-61315099 None:intergenic 35.0%
GATGAAGTTATCCCACTAAT+GGG - chr2_1:61315081-61315100 None:intergenic 35.0%
TGATGAAGTTATCCCACTAA+TGG - chr2_1:61315082-61315101 None:intergenic 35.0%
GTTAGGAAACATGATATCCA+AGG - chr2_1:61312527-61312546 None:intergenic 35.0%
CATTTATATGAGCTGCTGTT+AGG - chr2_1:61315180-61315199 None:intergenic 35.0%
TGCCCTACTGAAAAAGTAGT+TGG - chr2_1:61306865-61306884 None:intergenic 40.0%
CTGTACCCTATCATTCTTGT+TGG - chr2_1:61306932-61306951 None:intergenic 40.0%
TCATATACATATACCCCCTC+CGG + chr2_1:61307182-61307201 Msa0215800:intron 40.0%
! TCTTATATTTGAGACCGGAG+GGG - chr2_1:61307199-61307218 None:intergenic 40.0%
GCAGCAAGTATCATTTCAGA+CGG + chr2_1:61307415-61307434 Msa0215800:CDS 40.0%
TGAGTTGTTGGCAGTAATAG+AGG - chr2_1:61307451-61307470 None:intergenic 40.0%
CTGCCAACAACTCATGATAA+TGG + chr2_1:61307457-61307476 Msa0215800:CDS 40.0%
AAACACAAGACCAGAAATGG+AGG + chr2_1:61307486-61307505 Msa0215800:CDS 40.0%
GTGGAACAAAATCTTGGACA+TGG + chr2_1:61307516-61307535 Msa0215800:CDS 40.0%
GAACAAAATCTTGGACATGG+AGG + chr2_1:61307519-61307538 Msa0215800:CDS 40.0%
TTGGTTTCTGTCATGCTTGT+TGG + chr2_1:61307610-61307629 Msa0215800:CDS 40.0%
! GTGCTACTCTTGCTAATTCT+TGG + chr2_1:61307659-61307678 Msa0215800:CDS 40.0%
TTTATTCTACCAAGTGGAGC+CGG - chr2_1:61308412-61308431 None:intergenic 40.0%
GCTCCACTTGGTAGAATAAA+AGG + chr2_1:61308412-61308431 Msa0215800:intron 40.0%
GAAACACTCGTCATTGTAGA+TGG - chr2_1:61308521-61308540 None:intergenic 40.0%
!! CTCCTTTGAAATGTAGCCAA+TGG + chr2_1:61308920-61308939 Msa0215800:intron 40.0%
! TGCAAACATTAATGGGCCAT+TGG - chr2_1:61308939-61308958 None:intergenic 40.0%
!! TTGTCCTCCAAAAGCATCAA+TGG + chr2_1:61308964-61308983 Msa0215800:intron 40.0%
! GTTACCATTGATGCTTTTGG+AGG - chr2_1:61308971-61308990 None:intergenic 40.0%
ATCCCTCACAAATTCTTTGG+TGG + chr2_1:61309222-61309241 Msa0215800:intron 40.0%
TGCCACCAAAGAATTTGTGA+GGG - chr2_1:61309227-61309246 None:intergenic 40.0%
TTGCCACCAAAGAATTTGTG+AGG - chr2_1:61309228-61309247 None:intergenic 40.0%
ACCTAAGACAAAGAAGAGCA+AGG - chr2_1:61309936-61309955 None:intergenic 40.0%
TGCTCTTCTTTGTCTTAGGT+TGG + chr2_1:61309936-61309955 Msa0215800:intron 40.0%
TGCAAAGGAATATCACATGC+TGG + chr2_1:61310001-61310020 Msa0215800:CDS 40.0%
GCAAAGGAATATCACATGCT+GGG + chr2_1:61310002-61310021 Msa0215800:CDS 40.0%
TTCTAGCAATGTCTGGTGAT+TGG - chr2_1:61310124-61310143 None:intergenic 40.0%
ACAATCTGTAGTAAAGCCAC+TGG + chr2_1:61310226-61310245 Msa0215800:CDS 40.0%
ACTTTCAGCTATACCAGCAT+TGG + chr2_1:61310253-61310272 Msa0215800:CDS 40.0%
!! ATACCAGCATTGGTTCATGT+TGG + chr2_1:61310263-61310282 Msa0215800:CDS 40.0%
!! TACCAGCATTGGTTCATGTT+GGG + chr2_1:61310264-61310283 Msa0215800:CDS 40.0%
GTTCATGTTGGGATTGCATA+TGG + chr2_1:61310275-61310294 Msa0215800:CDS 40.0%
TGTTCAAACTAGAAGCTACC+GGG - chr2_1:61310632-61310651 None:intergenic 40.0%
GTGTTCAAACTAGAAGCTAC+CGG - chr2_1:61310633-61310652 None:intergenic 40.0%
CAGAATCCATTCCTTCATAG+GGG + chr2_1:61311308-61311327 Msa0215800:intron 40.0%
AAATGACCCCTATGAAGGAA+TGG - chr2_1:61311317-61311336 None:intergenic 40.0%
!! CATGTTTAGCTCTTTCAGGA+TGG - chr2_1:61311461-61311480 None:intergenic 40.0%
TCAAACCTGATAAGACACCT+TGG - chr2_1:61311653-61311672 None:intergenic 40.0%
TTACCCATTTCATGTCTCCT+TGG + chr2_1:61311835-61311854 Msa0215800:CDS 40.0%
!! GGACACTCTTACTTTTGACA+AGG + chr2_1:61312277-61312296 Msa0215800:CDS 40.0%
! TTTTGACAAGGCATGCCAAA+TGG + chr2_1:61312289-61312308 Msa0215800:CDS 40.0%
GCTTGTAATAACCCCATTAG+TGG + chr2_1:61312431-61312450 Msa0215800:intron 40.0%
! GTTTTCTCTCATTCCTTCCT+TGG + chr2_1:61312507-61312526 Msa0215800:intron 40.0%
GGAAACATGATATCCAAGGA+AGG - chr2_1:61312523-61312542 None:intergenic 40.0%
ACATGGTATCAGAGCTAATC+TGG + chr2_1:61312545-61312564 Msa0215800:intron 40.0%
TAATCTGGTATCCACCTTGA+AGG + chr2_1:61312560-61312579 Msa0215800:intron 40.0%
ATCGTGAAACCCTAGGATTT+GGG - chr2_1:61312846-61312865 None:intergenic 40.0%
AATCGTGAAACCCTAGGATT+TGG - chr2_1:61312847-61312866 None:intergenic 40.0%
TCACTTTCTTCGTTCTCGAT+CGG + chr2_1:61312915-61312934 Msa0215800:intron 40.0%
CACAAACTGAAACACGAAAC+AGG - chr2_1:61313176-61313195 None:intergenic 40.0%
! TGTGATTTTCCCCAAACCTT+AGG + chr2_1:61313194-61313213 Msa0215800:intron 40.0%
! GTGATTTTCCCCAAACCTTA+GGG + chr2_1:61313195-61313214 Msa0215800:intron 40.0%
AATCGCAAACCCTAAGGTTT+GGG - chr2_1:61313207-61313226 None:intergenic 40.0%
AGATTAGATTGCATCGTCGA+TGG + chr2_1:61313279-61313298 Msa0215800:intron 40.0%
GAAGTTCTTCGCATTTCTTG+AGG + chr2_1:61313322-61313341 Msa0215800:intron 40.0%
GAGAATCATTCTCAGATGTG+TGG + chr2_1:61313405-61313424 Msa0215800:intron 40.0%
AACCTTCAATGATGCAGATG+AGG - chr2_1:61313486-61313505 None:intergenic 40.0%
ATGGATATTAGTAGCACCCA+TGG + chr2_1:61313620-61313639 Msa0215800:intron 40.0%
GAACAATGAAGGAAAGCCAT+GGG - chr2_1:61313639-61313658 None:intergenic 40.0%
AGAACAATGAAGGAAAGCCA+TGG - chr2_1:61313640-61313659 None:intergenic 40.0%
CTCCAAAATTGATGAGCAGT+AGG - chr2_1:61313675-61313694 None:intergenic 40.0%
! CTACTGCTCATCAATTTTGG+AGG + chr2_1:61313673-61313692 Msa0215800:intron 40.0%
TTTCTTGCAAGACCTCTTGT+TGG + chr2_1:61314094-61314113 Msa0215800:intron 40.0%
!! TGTTGGTAGTTTCATGAAGC+TGG + chr2_1:61314111-61314130 Msa0215800:intron 40.0%
!! GTTGGTAGTTTCATGAAGCT+GGG + chr2_1:61314112-61314131 Msa0215800:intron 40.0%
CAAGTTGTGTTTGCACTAAG+TGG + chr2_1:61314380-61314399 Msa0215800:intron 40.0%
! ACATGGCTATGCATCTCTTT+TGG + chr2_1:61314550-61314569 Msa0215800:intron 40.0%
!!! CATCTCTTTTGGCTTGCATT+TGG + chr2_1:61314561-61314580 Msa0215800:intron 40.0%
! TTGTTGCTTCATGGTACCTT+TGG + chr2_1:61314644-61314663 Msa0215800:intron 40.0%
AGCACAAGACAAGAAGAACA+AGG - chr2_1:61314768-61314787 None:intergenic 40.0%
GAGTGATTGAGAACTCTTGA+TGG + chr2_1:61314796-61314815 Msa0215800:intron 40.0%
!! GTTAAGCGTTGTGCCTTTTA+AGG + chr2_1:61314818-61314837 Msa0215800:intron 40.0%
TGATATTTGCTTCTACCGGA+TGG + chr2_1:61314847-61314866 Msa0215800:intron 40.0%
CTCAAGGTTGAACCAATTGA+AGG - chr2_1:61314900-61314919 None:intergenic 40.0%
! ATTGGTTCAACCTTGAGTAG+TGG + chr2_1:61314903-61314922 Msa0215800:intron 40.0%
TTTGAACACCTTCCAACTTG+AGG + chr2_1:61315025-61315044 Msa0215800:intron 40.0%
TTGAACACCTTCCAACTTGA+GGG + chr2_1:61315026-61315045 Msa0215800:intron 40.0%
! GTTTTCTCTCATTCCTTCCT+TGG + chr2_1:61312507-61312526 Msa0215800:intron 40.0%
GGAAACATGATATCCAAGGA+AGG - chr2_1:61312523-61312542 None:intergenic 40.0%
GAGAACGCATATTGTTGCAA+AGG + chr2_1:61315310-61315329 Msa0215800:three_prime_UTR 40.0%
TGGGACCCAACAAGAATGAT+AGG + chr2_1:61306923-61306942 Msa0215800:five_prime_UTR 45.0%
GGGACCCAACAAGAATGATA+GGG + chr2_1:61306924-61306943 Msa0215800:five_prime_UTR 45.0%
! CTTATATTTGAGACCGGAGG+GGG - chr2_1:61307198-61307217 None:intergenic 45.0%
GACCAGAAATGGAGGACAAA+TGG + chr2_1:61307494-61307513 Msa0215800:CDS 45.0%
CACCATTTGTCCTCCATTTC+TGG - chr2_1:61307499-61307518 None:intergenic 45.0%
CAGAAATGGAGGACAAATGG+TGG + chr2_1:61307497-61307516 Msa0215800:CDS 45.0%
TGTCACTGGTGTAGCAGTTA+TGG + chr2_1:61307687-61307706 Msa0215800:CDS 45.0%
! GGCCATTGGCTACATTTCAA+AGG - chr2_1:61308925-61308944 None:intergenic 45.0%
CATACGTGGAAATGGTCTTC+AGG - chr2_1:61309340-61309359 None:intergenic 45.0%
GCCTTGCTCTTCTTTGTCTT+AGG + chr2_1:61309932-61309951 Msa0215800:intron 45.0%
CTAGAAACACTCTGTGGACA+AGG + chr2_1:61309972-61309991 Msa0215800:CDS 45.0%
ACACTCTGTGGACAAGGATT+TGG + chr2_1:61309978-61309997 Msa0215800:CDS 45.0%
!! TGGACAAGGATTTGGTGCAA+AGG + chr2_1:61309986-61310005 Msa0215800:CDS 45.0%
CAATGTCTGGTGATTGGTGA+AGG - chr2_1:61310118-61310137 None:intergenic 45.0%
GAAGCTGTTCTAGCAATGTC+TGG - chr2_1:61310131-61310150 None:intergenic 45.0%
!! GCGTCTTGCAAAACTTGTTG+AGG + chr2_1:61310192-61310211 Msa0215800:CDS 45.0%
ATCCCAACATGAACCAATGC+TGG - chr2_1:61310269-61310288 None:intergenic 45.0%
! AAACTAGCTCTTCCTTCTGC+AGG + chr2_1:61310467-61310486 Msa0215800:CDS 45.0%
TTCCTTCTGCAGGAATGGTA+TGG + chr2_1:61310477-61310496 Msa0215800:CDS 45.0%
TACCATACCATTCCTGCAGA+AGG - chr2_1:61310482-61310501 None:intergenic 45.0%
TTCAAACTAGAAGCTACCGG+GGG - chr2_1:61310630-61310649 None:intergenic 45.0%
GTTCAAACTAGAAGCTACCG+GGG - chr2_1:61310631-61310650 None:intergenic 45.0%
CATCACACTTAAAAGACCCC+TGG + chr2_1:61310964-61310983 Msa0215800:intron 45.0%
ATTTCCAATGAATTGGGGGC+AGG + chr2_1:61311435-61311454 Msa0215800:CDS 45.0%
! TCTGTCCAAGGTGTCTTATC+AGG + chr2_1:61311645-61311664 Msa0215800:CDS 45.0%
TGTGGCCTAGTGTGTCAAAT+TGG + chr2_1:61312255-61312274 Msa0215800:CDS 45.0%
GTGGCCTAGTGTGTCAAATT+GGG + chr2_1:61312256-61312275 Msa0215800:CDS 45.0%
GTGTCCCAATTTGACACACT+AGG - chr2_1:61312263-61312282 None:intergenic 45.0%
TGTATGTGTTGGGAACCAAG+TGG + chr2_1:61312391-61312410 Msa0215800:three_prime_UTR 45.0%
GCGGAAAATATCCTTCAAGG+TGG - chr2_1:61312574-61312593 None:intergenic 45.0%
GCAGCGGAAAATATCCTTCA+AGG - chr2_1:61312577-61312596 None:intergenic 45.0%
! ACCATTTTCCCCCAAATCCT+AGG + chr2_1:61312833-61312852 Msa0215800:intron 45.0%
! CCATTTTCCCCCAAATCCTA+GGG + chr2_1:61312834-61312853 Msa0215800:intron 45.0%
TCGTGAAACCCTAGGATTTG+GGG - chr2_1:61312845-61312864 None:intergenic 45.0%
! CTTTCTGTCCTTGATTCGTG+TGG + chr2_1:61313082-61313101 Msa0215800:intron 45.0%
ATCGCAAACCCTAAGGTTTG+GGG - chr2_1:61313206-61313225 None:intergenic 45.0%
GAATCGCAAACCCTAAGGTT+TGG - chr2_1:61313208-61313227 None:intergenic 45.0%
GTCTTGATTTCTCGTTGTCG+TGG + chr2_1:61313238-61313257 Msa0215800:intron 45.0%
ATGTGTGGTGCTTCGTGAAT+TGG + chr2_1:61313420-61313439 Msa0215800:intron 45.0%
CTCCTCATCTGCATCATTGA+AGG + chr2_1:61313481-61313500 Msa0215800:intron 45.0%
GATTGAAGTCTTGCAGCTCA+TGG + chr2_1:61314272-61314291 Msa0215800:intron 45.0%
!!! GAAGCATTGGTTTTGGCCTA+TGG + chr2_1:61314479-61314498 Msa0215800:intron 45.0%
! TGGTTTTTCTTGTCTCGGCT+CGG + chr2_1:61314581-61314600 Msa0215800:intron 45.0%
!! ACCTTGGTCTTGTTGCTTCA+TGG + chr2_1:61314635-61314654 Msa0215800:intron 45.0%
ACCATGAAGCAACAAGACCA+AGG - chr2_1:61314639-61314658 None:intergenic 45.0%
CCAAAGTCTACAATGGAAGG+AGG - chr2_1:61314693-61314712 None:intergenic 45.0%
CCTCCTTCCATTGTAGACTT+TGG + chr2_1:61314690-61314709 Msa0215800:intron 45.0%
TATTTGCTTCTACCGGATGG+TGG + chr2_1:61314850-61314869 Msa0215800:intron 45.0%
CAAGAAGCAACCACTACTCA+AGG - chr2_1:61314916-61314935 None:intergenic 45.0%
GAGTAGTGGTTGCTTCTTGT+TGG + chr2_1:61314917-61314936 Msa0215800:intron 45.0%
TGAACACCTTCCAACTTGAG+GGG + chr2_1:61315027-61315046 Msa0215800:intron 45.0%
ACTAATAGTCCCCCTCAAGT+TGG - chr2_1:61315040-61315059 None:intergenic 45.0%
CAGCAGCTCATATAAATGCG+TGG + chr2_1:61315182-61315201 Msa0215800:intron 45.0%
!! AATATTTATTAAAATACTAA+AGG - chr2_1:61307864-61307883 None:intergenic 5.0%
!!! TTATAAAATTTTATCTAAAT+TGG - chr2_1:61309047-61309066 None:intergenic 5.0%
!! AAACAAATAAAAAAATTATA+AGG - chr2_1:61309530-61309549 None:intergenic 5.0%
! GTCATGCTTGTTGGTCACCT+TGG + chr2_1:61307619-61307638 Msa0215800:CDS 50.0%
CAGCTAACTGAAGCTCACCA+AGG - chr2_1:61307639-61307658 None:intergenic 50.0%
CTTGGTGAGCTTCAGTTAGC+TGG + chr2_1:61307637-61307656 Msa0215800:CDS 50.0%
TTATGATGTCCGGCTCCACT+TGG + chr2_1:61308400-61308419 Msa0215800:intron 50.0%
GGTGCACTAGAAACACTCTG+TGG + chr2_1:61309966-61309985 Msa0215800:CDS 50.0%
AGCTCTTCCTTCTGCAGGAA+TGG + chr2_1:61310472-61310491 Msa0215800:CDS 50.0%
AGTTGAGTTACCCAATCCCC+CGG + chr2_1:61310611-61310630 Msa0215800:intron 50.0%
! ATGGTCTTAGTGCAGCTGCA+AGG + chr2_1:61311267-61311286 Msa0215800:CDS 50.0%
AGTGCAGCTGCAAGGTTAGT+TGG + chr2_1:61311275-61311294 Msa0215800:intron 50.0%
CTAAAGCTGTCTGTCCTCCT+TGG + chr2_1:61311495-61311514 Msa0215800:CDS 50.0%
TGTCTTGCATAATGCAGGGG+TGG + chr2_1:61311747-61311766 Msa0215800:intron 50.0%
CATAATGCAGGGGTGGTTAG+AGG + chr2_1:61311754-61311773 Msa0215800:intron 50.0%
CCCTAGGATTTGGGGGAAAA+TGG - chr2_1:61312837-61312856 None:intergenic 50.0%
CGTGAAACCCTAGGATTTGG+GGG - chr2_1:61312844-61312863 None:intergenic 50.0%
! CTCGTTGTCGTGGTGCATTT+TGG + chr2_1:61313248-61313267 Msa0215800:intron 50.0%
GTTTCATGAAGCTGGGCACA+TGG + chr2_1:61314119-61314138 Msa0215800:intron 50.0%
GCTCATGGTGCCTTGGTATT+TGG + chr2_1:61314287-61314306 Msa0215800:intron 50.0%
GGGCCAAAGTCTACAATGGA+AGG - chr2_1:61314696-61314715 None:intergenic 50.0%
GGAAGGGCCAAAGTCTACAA+TGG - chr2_1:61314700-61314719 None:intergenic 50.0%
AGCAACGCTTAACCACCATC+CGG - chr2_1:61314865-61314884 None:intergenic 50.0%
! GCTTTTAGCCGATGTGTTCC+CGG + chr2_1:61314963-61314982 Msa0215800:intron 50.0%
GAAAGATGCCGGGAACACAT+CGG - chr2_1:61314974-61314993 None:intergenic 50.0%
GAACACCTTCCAACTTGAGG+GGG + chr2_1:61315028-61315047 Msa0215800:intron 50.0%
!! ATAGTCCCCCTCAAGTTGGA+AGG - chr2_1:61315036-61315055 None:intergenic 50.0%
GGGGGATTGGGTAACTCAAC+TGG - chr2_1:61310612-61310631 None:intergenic 55.0%
CTAGAAGCTACCGGGGGATT+GGG - chr2_1:61310624-61310643 None:intergenic 55.0%
ACTAGAAGCTACCGGGGGAT+TGG - chr2_1:61310625-61310644 None:intergenic 55.0%
ATGGCCTGCCCCCAATTCAT+TGG - chr2_1:61311442-61311461 None:intergenic 55.0%
GGGTGGTTAGAGGATGTGGT+TGG + chr2_1:61311764-61311783 Msa0215800:CDS 55.0%
AGGATGTGGTTGGCAGCACT+TGG + chr2_1:61311774-61311793 Msa0215800:CDS 55.0%
TCTTGCAGCTCATGGTGCCT+TGG + chr2_1:61314280-61314299 Msa0215800:intron 55.0%
!! TTCTTGTCTCGGCTCGGCAT+TGG + chr2_1:61314587-61314606 Msa0215800:intron 55.0%
GCAGGGGTGGTTAGAGGATG+TGG + chr2_1:61311760-61311779 Msa0215800:intron 60.0%
!! TTGTCTCGGCTCGGCATTGG+AGG + chr2_1:61314590-61314609 Msa0215800:intron 60.0%
!! TGTCTCGGCTCGGCATTGGA+GGG + chr2_1:61314591-61314610 Msa0215800:intron 60.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 61306800 61315345 61306800 ID=Msa0215800;Name=Msa0215800
chr2_1 mRNA 61306800 61315345 61306800 ID=Msa0215800-mRNA-1;Parent=Msa0215800;Name=Msa0215800-mRNA-1;_AED=0.13;_eAED=0.13;_QI=277|1|1|1|0.62|0.55|9|262|483
chr2_1 exon 61306800 61307008 61306800 ID=Msa0215800-mRNA-1:exon:16909;Parent=Msa0215800-mRNA-1
chr2_1 exon 61307344 61307708 61307344 ID=Msa0215800-mRNA-1:exon:16910;Parent=Msa0215800-mRNA-1
chr2_1 exon 61309954 61310498 61309954 ID=Msa0215800-mRNA-1:exon:16911;Parent=Msa0215800-mRNA-1
chr2_1 exon 61311063 61311149 61311063 ID=Msa0215800-mRNA-1:exon:16912;Parent=Msa0215800-mRNA-1
chr2_1 exon 61311232 61311288 61311232 ID=Msa0215800-mRNA-1:exon:16913;Parent=Msa0215800-mRNA-1
chr2_1 exon 61311428 61311666 61311428 ID=Msa0215800-mRNA-1:exon:16914;Parent=Msa0215800-mRNA-1
chr2_1 exon 61311764 61311882 61311764 ID=Msa0215800-mRNA-1:exon:16915;Parent=Msa0215800-mRNA-1
chr2_1 exon 61312234 61312445 61312234 ID=Msa0215800-mRNA-1:exon:16916;Parent=Msa0215800-mRNA-1
chr2_1 exon 61315188 61315345 61315188 ID=Msa0215800-mRNA-1:exon:16917;Parent=Msa0215800-mRNA-1
chr2_1 five_prime_UTR 61306800 61307008 61306800 ID=Msa0215800-mRNA-1:five_prime_utr;Parent=Msa0215800-mRNA-1
chr2_1 five_prime_UTR 61307344 61307411 61307344 ID=Msa0215800-mRNA-1:five_prime_utr;Parent=Msa0215800-mRNA-1
chr2_1 CDS 61307412 61307708 61307412 ID=Msa0215800-mRNA-1:cds;Parent=Msa0215800-mRNA-1
chr2_1 CDS 61309954 61310498 61309954 ID=Msa0215800-mRNA-1:cds;Parent=Msa0215800-mRNA-1
chr2_1 CDS 61311063 61311149 61311063 ID=Msa0215800-mRNA-1:cds;Parent=Msa0215800-mRNA-1
chr2_1 CDS 61311232 61311288 61311232 ID=Msa0215800-mRNA-1:cds;Parent=Msa0215800-mRNA-1
chr2_1 CDS 61311428 61311666 61311428 ID=Msa0215800-mRNA-1:cds;Parent=Msa0215800-mRNA-1
chr2_1 CDS 61311764 61311882 61311764 ID=Msa0215800-mRNA-1:cds;Parent=Msa0215800-mRNA-1
chr2_1 CDS 61312234 61312341 61312234 ID=Msa0215800-mRNA-1:cds;Parent=Msa0215800-mRNA-1
chr2_1 three_prime_UTR 61312342 61312445 61312342 ID=Msa0215800-mRNA-1:three_prime_utr;Parent=Msa0215800-mRNA-1
chr2_1 three_prime_UTR 61315188 61315345 61315188 ID=Msa0215800-mRNA-1:three_prime_utr;Parent=Msa0215800-mRNA-1
Gene Sequence

>Msa0215800

ATGGCAGCAAGTATCATTTCAGACGGCACAGAAACACCTCTATTACTGCCAACAACTCATGATAATGGAAAACAAAACACAAGACCAGAAATGGAGGACAAATGGTGGAACAAAATCTTGGACATGGAGGAAGCCAAACAACAACTCATGTTTTCACTACCAATGATTTTTACAAACTTATTTTATTACTTGATTACTTTGGTTTCTGTCATGCTTGTTGGTCACCTTGGTGAGCTTCAGTTAGCTGGTGCTACTCTTGCTAATTCTTGGTTTAGTGTCACTGGTGTAGCAGTTATGGTTGGTTTAAGTGGTGCACTAGAAACACTCTGTGGACAAGGATTTGGTGCAAAGGAATATCACATGCTGGGAATTTATCTACAAGGCTCTTGCATTATATCTTTTATTTTTTCAATCATTATATCAATTGTTTGGTTCTACACAGAACACATTCTAGTGTTCCTTCACCAATCACCAGACATTGCTAGAACAGCTTCACTCTATATGAAGTTTCTTATACCAGGATTATTTGCATATAGCGTCTTGCAAAACTTGTTGAGGTTTCTACAAACACAATCTGTAGTAAAGCCACTGGTTATACTTTCAGCTATACCAGCATTGGTTCATGTTGGGATTGCATATGGATTTGTTCATTGGACAAGTCTGAATTTCAAAGGTGGACCAGTTGCAACTTCTATTTCACTATGGATATCTATGATATTGGTAGGTTTTTATGTCTTGTATGCAAAGAAGTTTGAGAATACATGGAGAGGATTTTCAATGGAGTCATTTCAGTACTTGTATACAAACATGAAACTAGCTCTTCCTTCTGCAGGAATGGTATGTTTGGAGTATTGGGCTTTCGAAATTTTGGTTTTCTTAGCTGGATTAATGCCTGACTCACAAATAACAATTTCATTGATTGCAATATGTGAAAACACAGAATTCATTGCTTACATGATCACTTATGGTCTTAGTGCAGCTGCAAGCACAAGGATTTCCAATGAATTGGGGGCAGGCCATCCTGAAAGAGCTAAACATGCAATGAGAGTCACTCTAAAGCTGTCTGTCCTCCTTGGATTCTGTTTTGTTTTGATGCTTTTGTTTGGTCATGATATATGGATTCAAATGTTTAGTGATAGTCCTATTATCAAACATAAGTTTGCTTCAATAACACCTTTGCTTGCTATTTCCATACTACTAGATTCTGTCCAAGGTGTCTTATCAGGGGTGGTTAGAGGATGTGGTTGGCAGCACTTGGTTGTTTATGTCAACCTTGCCACTTTTTATCTCATTGGTTTACCCATTTCATGTCTCCTTGGATTTAAGACCAATTTGCATTATAAGGGTTTATGGATTGGTCTAATTTGTGGCCTAGTGTGTCAAATTGGGACACTCTTACTTTTGACAAGGCATGCCAAATGGACTAAACTGAATATCTCGGGACAGAGATAA
Protein sequence

>Msa0215800

MAASIISDGTETPLLLPTTHDNGKQNTRPEMEDKWWNKILDMEEAKQQLMFSLPMIFTNLFYYLITLVSVMLVGHLGELQLAGATLANSWFSVTGVAVMVGLSGALETLCGQGFGAKEYHMLGIYLQGSCIISFIFSIIISIVWFYTEHILVFLHQSPDIARTASLYMKFLIPGLFAYSVLQNLLRFLQTQSVVKPLVILSAIPALVHVGIAYGFVHWTSLNFKGGPVATSISLWISMILVGFYVLYAKKFENTWRGFSMESFQYLYTNMKLALPSAGMVCLEYWAFEILVFLAGLMPDSQITISLIAICENTEFIAYMITYGLSAAASTRISNELGAGHPERAKHAMRVTLKLSVLLGFCFVLMLLFGHDIWIQMFSDSPIIKHKFASITPLLAISILLDSVQGVLSGVVRGCGWQHLVVYVNLATFYLIGLPISCLLGFKTNLHYKGLWIGLICGLVCQIGTLLLLTRHAKWTKLNISGQR*