Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0166590 | sp|Q8L8B8|LOG3_ARATH | 87.342 | 158 | 19 | 1 | 1 | 158 | 58 | 214 | 1.99e-99 | 288 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0166590 | G7IBJ7 | 98.773 | 163 | 2 | 0 | 1 | 163 | 1 | 163 | 6.44e-115 | 332 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001450 | Msa0166590 | 0.850356 | 1.790367e-60 | -8.615850e-47 |
| Msa0007480 | Msa0166590 | 0.800194 | 1.615645e-48 | -8.615850e-47 |
| Msa0016670 | Msa0166590 | 0.815947 | 7.121495e-52 | -8.615850e-47 |
| Msa0026130 | Msa0166590 | 0.997330 | 1.187363e-240 | -8.615850e-47 |
| Msa0027230 | Msa0166590 | 0.832342 | 9.982121e-56 | -8.615850e-47 |
| Msa0027260 | Msa0166590 | 0.831021 | 2.113875e-55 | -8.615850e-47 |
| Msa0028420 | Msa0166590 | 0.811111 | 8.243890e-51 | -8.615850e-47 |
| Msa0048180 | Msa0166590 | 0.823084 | 1.675605e-53 | -8.615850e-47 |
| Msa0069330 | Msa0166590 | 0.834239 | 3.361529e-56 | -8.615850e-47 |
| Msa0073670 | Msa0166590 | 0.883217 | 5.406802e-71 | -8.615850e-47 |
| Msa0075220 | Msa0166590 | 0.805156 | 1.529689e-49 | -8.615850e-47 |
| Msa0076040 | Msa0166590 | 0.828866 | 7.085202e-55 | -8.615850e-47 |
| Msa0081520 | Msa0166590 | 0.801864 | 7.361477e-49 | -8.615850e-47 |
| Msa0097810 | Msa0166590 | 0.801372 | 9.286686e-49 | -8.615850e-47 |
| Msa0100740 | Msa0166590 | 0.800519 | 1.387431e-48 | -8.615850e-47 |
| Msa0104550 | Msa0166590 | 0.826510 | 2.607896e-54 | -8.615850e-47 |
| Msa0110970 | Msa0166590 | 0.808695 | 2.729119e-50 | -8.615850e-47 |
| Msa0112790 | Msa0166590 | 0.964660 | 1.316080e-123 | -8.615850e-47 |
| Msa0115160 | Msa0166590 | 0.817474 | 3.237209e-52 | -8.615850e-47 |
| Msa0118570 | Msa0166590 | 0.804360 | 2.242018e-49 | -8.615850e-47 |
| Msa0122970 | Msa0166590 | 0.832678 | 8.244285e-56 | -8.615850e-47 |
| Msa0125450 | Msa0166590 | 0.810073 | 1.381758e-50 | -8.615850e-47 |
| Msa0125540 | Msa0166590 | 0.814242 | 1.702291e-51 | -8.615850e-47 |
| Msa0128860 | Msa0166590 | 0.828057 | 1.111022e-54 | -8.615850e-47 |
| Msa0134610 | Msa0166590 | 0.829171 | 5.977436e-55 | -8.615850e-47 |
| Msa0140820 | Msa0166590 | 0.836234 | 1.054247e-56 | -8.615850e-47 |
| Msa0150570 | Msa0166590 | 0.803658 | 3.138813e-49 | -8.615850e-47 |
| Msa0166590 | Msa0168500 | 0.802230 | 6.192384e-49 | -8.615850e-47 |
| Msa0166590 | Msa0174730 | 0.828396 | 9.203879e-55 | -8.615850e-47 |
| Msa0166590 | Msa0181610 | 0.825294 | 5.070993e-54 | -8.615850e-47 |
| Msa0166590 | Msa0182620 | -0.822537 | 2.247021e-53 | -8.615850e-47 |
| Msa0166590 | Msa0196690 | 0.802107 | 6.561711e-49 | -8.615850e-47 |
| Msa0166590 | Msa0197420 | 0.837925 | 3.897532e-57 | -8.615850e-47 |
| Msa0166590 | Msa0199880 | 0.819791 | 9.647403e-53 | -8.615850e-47 |
| Msa0166590 | Msa0215800 | 0.800496 | 1.402418e-48 | -8.615850e-47 |
| Msa0166590 | Msa0229760 | 0.803730 | 3.032904e-49 | -8.615850e-47 |
| Msa0166590 | Msa0232080 | 0.801084 | 1.063809e-48 | -8.615850e-47 |
| Msa0166590 | Msa0239190 | 0.826597 | 2.485809e-54 | -8.615850e-47 |
| Msa0166590 | Msa0239570 | 0.804175 | 2.450796e-49 | -8.615850e-47 |
| Msa0166590 | Msa0255090 | 0.834998 | 2.167484e-56 | -8.615850e-47 |
| Msa0166590 | Msa0259380 | 0.828016 | 1.136143e-54 | -8.615850e-47 |
| Msa0166590 | Msa0277180 | 0.805640 | 1.210778e-49 | -8.615850e-47 |
| Msa0166590 | Msa0280610 | 0.815993 | 6.953186e-52 | -8.615850e-47 |
| Msa0166590 | Msa0292400 | 0.816132 | 6.474145e-52 | -8.615850e-47 |
| Msa0166590 | Msa0294160 | 0.837096 | 6.357992e-57 | -8.615850e-47 |
| Msa0166590 | Msa0302160 | 0.800828 | 1.200049e-48 | -8.615850e-47 |
| Msa0166590 | Msa0307850 | 0.823233 | 1.546898e-53 | -8.615850e-47 |
| Msa0166590 | Msa0316810 | 0.836146 | 1.110486e-56 | -8.615850e-47 |
| Msa0166590 | Msa0339490 | 0.802761 | 4.811190e-49 | -8.615850e-47 |
| Msa0166590 | Msa0339500 | 0.839149 | 1.882970e-57 | -8.615850e-47 |
| Msa0166590 | Msa0344570 | 0.801402 | 9.158895e-49 | -8.615850e-47 |
| Msa0166590 | Msa0369450 | 0.855020 | 8.347003e-62 | -8.615850e-47 |
| Msa0166590 | Msa0380300 | 0.822423 | 2.387250e-53 | -8.615850e-47 |
| Msa0166590 | Msa0392490 | 0.811172 | 7.995888e-51 | -8.615850e-47 |
| Msa0166590 | Msa0395820 | 0.822129 | 2.793981e-53 | -8.615850e-47 |
| Msa0166590 | Msa0405710 | 0.831391 | 1.714599e-55 | -8.615850e-47 |
| Msa0166590 | Msa0410500 | 0.808203 | 3.475883e-50 | -8.615850e-47 |
| Msa0166590 | Msa0468330 | 0.817023 | 4.088918e-52 | -8.615850e-47 |
| Msa0166590 | Msa0475790 | 0.839651 | 1.394975e-57 | -8.615850e-47 |
| Msa0166590 | Msa0487630 | 0.818244 | 2.168538e-52 | -8.615850e-47 |
| Msa0166590 | Msa0524500 | 0.856597 | 2.890059e-62 | -8.615850e-47 |
| Msa0166590 | Msa0526420 | 0.804344 | 2.260337e-49 | -8.615850e-47 |
| Msa0166590 | Msa0526540 | 0.801617 | 8.275463e-49 | -8.615850e-47 |
| Msa0166590 | Msa0527550 | 0.812054 | 5.141232e-51 | -8.615850e-47 |
| Msa0166590 | Msa0535110 | 0.805102 | 1.569413e-49 | -8.615850e-47 |
| Msa0166590 | Msa0552810 | 0.838847 | 2.255127e-57 | -8.615850e-47 |
| Msa0166590 | Msa0556060 | 0.810808 | 9.589443e-51 | -8.615850e-47 |
| Msa0166590 | Msa0574890 | 0.801286 | 9.675120e-49 | -8.615850e-47 |
| Msa0166590 | Msa0581070 | 0.834336 | 3.179675e-56 | -8.615850e-47 |
| Msa0166590 | Msa0581110 | 0.805650 | 1.204749e-49 | -8.615850e-47 |
| Msa0166590 | Msa0588360 | 0.815994 | 6.951106e-52 | -8.615850e-47 |
| Msa0166590 | Msa0615710 | 0.805907 | 1.064031e-49 | -8.615850e-47 |
| Msa0166590 | Msa0638480 | 0.801105 | 1.053316e-48 | -8.615850e-47 |
| Msa0166590 | Msa0644800 | 0.809834 | 1.555654e-50 | -8.615850e-47 |
| Msa0166590 | Msa0669520 | 0.816706 | 4.817144e-52 | -8.615850e-47 |
| Msa0166590 | Msa0683570 | 0.815946 | 7.125040e-52 | -8.615850e-47 |
| Msa0166590 | Msa0687630 | 0.820764 | 5.773147e-53 | -8.615850e-47 |
| Msa0166590 | Msa0689230 | 0.809646 | 1.707381e-50 | -8.615850e-47 |
| Msa0166590 | Msa0692840 | 0.841546 | 4.450786e-58 | -8.615850e-47 |
| Msa0166590 | Msa0713820 | 0.807705 | 4.436958e-50 | -8.615850e-47 |
| Msa0166590 | Msa0719510 | 0.823694 | 1.206602e-53 | -8.615850e-47 |
| Msa0166590 | Msa0738040 | 0.819327 | 1.230960e-52 | -8.615850e-47 |
| Msa0166590 | Msa0749760 | 0.817988 | 2.477838e-52 | -8.615850e-47 |
| Msa0166590 | Msa0752510 | 0.832385 | 9.744156e-56 | -8.615850e-47 |
| Msa0166590 | Msa0763070 | 0.802780 | 4.768645e-49 | -8.615850e-47 |
| Msa0166590 | Msa0784200 | 0.829542 | 4.856626e-55 | -8.615850e-47 |
| Msa0166590 | Msa0790400 | 0.801448 | 8.962928e-49 | -8.615850e-47 |
| Msa0166590 | Msa0797750 | 0.810314 | 1.225634e-50 | -8.615850e-47 |
| Msa0166590 | Msa0818310 | 0.849354 | 3.411862e-60 | -8.615850e-47 |
| Msa0166590 | Msa0821760 | 0.805131 | 1.547907e-49 | -8.615850e-47 |
| Msa0166590 | Msa0830880 | 0.836485 | 9.102709e-57 | -8.615850e-47 |
| Msa0166590 | Msa0858770 | 0.839298 | 1.723144e-57 | -8.615850e-47 |
| Msa0166590 | Msa0864010 | 0.802969 | 4.359900e-49 | -8.615850e-47 |
| Msa0166590 | Msa0880780 | 0.817350 | 3.450637e-52 | -8.615850e-47 |
| Msa0166590 | Msa0896970 | 0.804647 | 1.953476e-49 | -8.615850e-47 |
| Msa0166590 | Msa0902760 | 0.821736 | 3.445877e-53 | -8.615850e-47 |
| Msa0166590 | Msa0930780 | 0.811474 | 6.874439e-51 | -8.615850e-47 |
| Msa0166590 | Msa0931460 | 0.827770 | 1.302399e-54 | -8.615850e-47 |
| Msa0166590 | Msa0936340 | 0.820087 | 8.253118e-53 | -8.615850e-47 |
| Msa0166590 | Msa0945110 | 0.823611 | 1.261559e-53 | -8.615850e-47 |
| Msa0166590 | Msa0961690 | 0.800703 | 1.272696e-48 | -8.615850e-47 |
| Msa0166590 | Msa0968590 | 0.817259 | 3.617874e-52 | -8.615850e-47 |
| Msa0166590 | Msa1006840 | 0.806855 | 6.716982e-50 | -8.615850e-47 |
| Msa0166590 | Msa1012720 | 0.815685 | 8.146076e-52 | -8.615850e-47 |
| Msa0166590 | Msa1013400 | 0.820433 | 6.877892e-53 | -8.615850e-47 |
| Msa0166590 | Msa1019240 | 0.812102 | 5.019943e-51 | -8.615850e-47 |
| Msa0166590 | Msa1019260 | 0.832718 | 8.053807e-56 | -8.615850e-47 |
| Msa0166590 | Msa1040400 | 0.821831 | 3.275581e-53 | -8.615850e-47 |
| Msa0166590 | Msa1041530 | 0.805120 | 1.555998e-49 | -8.615850e-47 |
| Msa0166590 | Msa1055010 | 0.807183 | 5.723704e-50 | -8.615850e-47 |
| Msa0166590 | Msa1066490 | 0.813031 | 3.143707e-51 | -8.615850e-47 |
| Msa0166590 | Msa1074810 | 0.803765 | 2.981734e-49 | -8.615850e-47 |
| Msa0166590 | Msa1078170 | 0.826408 | 2.757962e-54 | -8.615850e-47 |
| Msa0166590 | Msa1079230 | 0.800100 | 1.688785e-48 | -8.615850e-47 |
| Msa0166590 | Msa1081150 | 0.821521 | 3.862559e-53 | -8.615850e-47 |
| Msa0166590 | Msa1081930 | 0.804762 | 1.849010e-49 | -8.615850e-47 |
| Msa0166590 | Msa1093530 | 0.820639 | 6.166408e-53 | -8.615850e-47 |
| Msa0166590 | Msa1093840 | 0.838103 | 3.508500e-57 | -8.615850e-47 |
| Msa0166590 | Msa1104140 | 0.814342 | 1.617504e-51 | -8.615850e-47 |
| Msa0166590 | Msa1104210 | 0.807299 | 5.409203e-50 | -8.615850e-47 |
| Msa0166590 | Msa1106700 | 0.811821 | 5.777881e-51 | -8.615850e-47 |
| Msa0166590 | Msa1115770 | 0.817708 | 2.866638e-52 | -8.615850e-47 |
| Msa0166590 | Msa1124110 | 0.830395 | 3.009351e-55 | -8.615850e-47 |
| Msa0166590 | Msa1126510 | 0.864871 | 8.901633e-65 | -8.615850e-47 |
| Msa0166590 | Msa1126770 | 0.827431 | 1.570413e-54 | -8.615850e-47 |
| Msa0166590 | Msa1126830 | 0.802109 | 6.557762e-49 | -8.615850e-47 |
| Msa0166590 | Msa1127890 | 0.807380 | 5.198607e-50 | -8.615850e-47 |
| Msa0166590 | Msa1128600 | 0.803248 | 3.815953e-49 | -8.615850e-47 |
| Msa0166590 | Msa1134110 | 0.812870 | 3.409961e-51 | -8.615850e-47 |
| Msa0166590 | Msa1157870 | 0.828041 | 1.120494e-54 | -8.615850e-47 |
| Msa0166590 | Msa1165870 | 0.821056 | 4.944411e-53 | -8.615850e-47 |
| Msa0166590 | Msa1165940 | 0.813860 | 2.066864e-51 | -8.615850e-47 |
| Msa0166590 | Msa1166860 | 0.840531 | 8.223551e-58 | -8.615850e-47 |
| Msa0166590 | Msa1168950 | 0.805648 | 1.206212e-49 | -8.615850e-47 |
| Msa0166590 | Msa1189070 | 0.804240 | 2.375376e-49 | -8.615850e-47 |
| Msa0166590 | Msa1207270 | 0.809170 | 2.159846e-50 | -8.615850e-47 |
| Msa0166590 | Msa1218550 | 0.823644 | 1.239702e-53 | -8.615850e-47 |
| Msa0166590 | Msa1218600 | 0.820773 | 5.744083e-53 | -8.615850e-47 |
| Msa0166590 | Msa1221060 | 0.826083 | 3.295800e-54 | -8.615850e-47 |
| Msa0166590 | Msa1251160 | 0.872306 | 3.519772e-67 | -8.615850e-47 |
| Msa0166590 | Msa1252190 | 0.800435 | 1.442951e-48 | -8.615850e-47 |
| Msa0166590 | Msa1254610 | 0.800371 | 1.487531e-48 | -8.615850e-47 |
| Msa0166590 | Msa1257510 | 0.815626 | 8.395180e-52 | -8.615850e-47 |
| Msa0166590 | Msa1292830 | 0.806754 | 7.055573e-50 | -8.615850e-47 |
| Msa0166590 | Msa1303240 | 0.820795 | 5.679179e-53 | -8.615850e-47 |
| Msa0166590 | Msa1303250 | 0.815562 | 8.674805e-52 | -8.615850e-47 |
| Msa0166590 | Msa1307950 | 0.825656 | 4.161375e-54 | -8.615850e-47 |
| Msa0166590 | Msa1314730 | 0.809488 | 1.846403e-50 | -8.615850e-47 |
| Msa0166590 | Msa1321630 | 0.803779 | 2.962408e-49 | -8.615850e-47 |
| Msa0166590 | Msa1343260 | 0.802122 | 6.516440e-49 | -8.615850e-47 |
| Msa0166590 | Msa1361400 | 0.829758 | 4.303321e-55 | -8.615850e-47 |
| Msa0166590 | Msa1361410 | 0.824315 | 8.626027e-54 | -8.615850e-47 |
| Msa0166590 | Msa1363330 | 0.803255 | 3.804409e-49 | -8.615850e-47 |
| Msa0166590 | Msa1366800 | 0.822383 | 2.438926e-53 | -8.615850e-47 |
| Msa0166590 | Msa1367590 | 0.854170 | 1.471330e-61 | -8.615850e-47 |
| Msa0166590 | Msa1367880 | 0.819593 | 1.070703e-52 | -8.615850e-47 |
| Msa0166590 | Msa1369150 | 0.810931 | 9.017844e-51 | -8.615850e-47 |
| Msa0166590 | Msa1374550 | 0.822006 | 2.984123e-53 | -8.615850e-47 |
| Msa0166590 | Msa1376650 | 0.827698 | 1.355196e-54 | -8.615850e-47 |
| Msa0166590 | Msa1379760 | 0.824644 | 7.219934e-54 | -8.615850e-47 |
| Msa0166590 | Msa1386600 | 0.802899 | 4.505761e-49 | -8.615850e-47 |
| Msa0166590 | Msa1401860 | 0.823950 | 1.050829e-53 | -8.615850e-47 |
| Msa0166590 | Msa1404190 | 0.804501 | 2.096293e-49 | -8.615850e-47 |
| Msa0166590 | Msa1436570 | 0.825204 | 5.325541e-54 | -8.615850e-47 |
| Msa0166590 | Msa1440880 | 0.810307 | 1.229998e-50 | -8.615850e-47 |
| Msa0166590 | Msa1443300 | 0.810037 | 1.406812e-50 | -8.615850e-47 |
| Msa0166590 | Msa1446810 | 0.843430 | 1.408431e-58 | -8.615850e-47 |
| Msa0166590 | Msa1451160 | 0.824576 | 7.489143e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0166590 | MtrunA17_Chr1g0181131 | 98.773 | 163 | 2 | 0 | 1 | 163 | 57 | 219 | 2.78e-118 | 333 |
| Msa0166590 | MtrunA17_Chr7g0264181 | 96.319 | 163 | 6 | 0 | 1 | 163 | 58 | 220 | 1.63e-116 | 328 |
| Msa0166590 | MtrunA17_Chr2g0326841 | 86.755 | 151 | 20 | 0 | 1 | 151 | 57 | 207 | 2.19e-95 | 275 |
| Msa0166590 | MtrunA17_Chr4g0028871 | 88.514 | 148 | 17 | 0 | 1 | 148 | 57 | 204 | 8.15e-94 | 270 |
| Msa0166590 | MtrunA17_Chr3g0142491 | 76.074 | 163 | 39 | 0 | 1 | 163 | 59 | 221 | 4.49e-92 | 266 |
| Msa0166590 | MtrunA17_Chr1g0177391 | 71.605 | 162 | 44 | 1 | 1 | 162 | 53 | 212 | 9.74e-83 | 243 |
| Msa0166590 | MtrunA17_Chr1g0151201 | 66.026 | 156 | 53 | 0 | 1 | 156 | 55 | 210 | 1.99e-74 | 222 |
| Msa0166590 | MtrunA17_Chr1g0156401 | 60.000 | 95 | 17 | 1 | 1 | 74 | 18 | 112 | 4.59e-32 | 110 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0166590 | AT2G37210.1 | 87.342 | 158 | 19 | 1 | 1 | 158 | 58 | 214 | 2.03e-100 | 288 |
| Msa0166590 | AT3G53450.1 | 88.742 | 151 | 17 | 0 | 1 | 151 | 58 | 208 | 1.87e-99 | 285 |
| Msa0166590 | AT2G28305.1 | 85.276 | 163 | 23 | 1 | 1 | 163 | 52 | 213 | 2.38e-98 | 282 |
| Msa0166590 | AT2G37210.2 | 75.275 | 182 | 20 | 2 | 1 | 158 | 58 | 238 | 2.11e-94 | 273 |
| Msa0166590 | AT2G28305.3 | 91.667 | 132 | 11 | 0 | 1 | 132 | 52 | 183 | 6.05e-87 | 253 |
| Msa0166590 | AT5G06300.1 | 77.419 | 155 | 35 | 0 | 1 | 155 | 53 | 207 | 3.07e-86 | 252 |
| Msa0166590 | AT5G03270.1 | 84.892 | 139 | 21 | 0 | 1 | 139 | 63 | 201 | 7.02e-83 | 243 |
| Msa0166590 | AT4G35190.1 | 72.368 | 152 | 42 | 0 | 1 | 152 | 53 | 204 | 1.17e-80 | 238 |
| Msa0166590 | AT5G03270.2 | 85.821 | 134 | 19 | 0 | 1 | 134 | 63 | 196 | 8.54e-80 | 235 |
| Msa0166590 | AT2G35990.3 | 69.388 | 147 | 45 | 0 | 1 | 147 | 1 | 147 | 5.16e-77 | 226 |
| Msa0166590 | AT2G35990.2 | 69.388 | 147 | 45 | 0 | 1 | 147 | 1 | 147 | 5.16e-77 | 226 |
| Msa0166590 | AT2G35990.1 | 69.388 | 147 | 45 | 0 | 1 | 147 | 53 | 199 | 2.09e-76 | 227 |
| Msa0166590 | AT4G35190.2 | 74.648 | 142 | 34 | 1 | 1 | 142 | 53 | 192 | 5.16e-75 | 223 |
| Msa0166590 | AT5G11950.4 | 64.103 | 156 | 56 | 0 | 1 | 156 | 1 | 156 | 1.87e-73 | 218 |
| Msa0166590 | AT5G11950.1 | 64.103 | 156 | 56 | 0 | 1 | 156 | 54 | 209 | 1.08e-72 | 218 |
| Msa0166590 | AT5G11950.2 | 64.103 | 156 | 56 | 0 | 1 | 156 | 54 | 209 | 1.08e-72 | 218 |
| Msa0166590 | AT5G11950.3 | 64.103 | 156 | 56 | 0 | 1 | 156 | 54 | 209 | 1.08e-72 | 218 |
| Msa0166590 | AT2G28305.2 | 94.118 | 85 | 5 | 0 | 1 | 85 | 52 | 136 | 4.93e-54 | 168 |
| Msa0166590 | AT5G26140.2 | 51.656 | 151 | 51 | 1 | 28 | 156 | 6 | 156 | 1.66e-47 | 152 |
| Msa0166590 | AT5G26140.1 | 50.365 | 137 | 46 | 1 | 42 | 156 | 1 | 137 | 3.15e-40 | 133 |
| Msa0166590 | AT5G26140.3 | 53.774 | 106 | 49 | 0 | 51 | 156 | 17 | 122 | 4.21e-36 | 122 |
Find 63 sgRNAs with CRISPR-Local
Find 165 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAAATATTGATCTAGTTTA+TGG | 0.173128 | 1_4:-47952333 | Msa0166590:five_prime_UTR |
| TTTAGAAATAGATTACTTAA+AGG | 0.231492 | 1_4:+47949767 | None:intergenic |
| AAATTACATGCAGGTGGTTA+TGG | 0.290968 | 1_4:-47950539 | Msa0166590:intron |
| CACAAACCATTAAAATTGAT+TGG | 0.292117 | 1_4:+47952365 | None:intergenic |
| TTAGAAATAGATTACTTAAA+GGG | 0.298161 | 1_4:+47949768 | None:intergenic |
| CCTAGTACTTACAACTTAGA+AGG | 0.333083 | 1_4:+47949830 | None:intergenic |
| CCTTCTAAGTTGTAAGTACT+AGG | 0.339347 | 1_4:-47949830 | Msa0166590:three_prime_UTR |
| ACAATTATGTGGCGCGCATT+TGG | 0.351381 | 1_4:+47950272 | None:intergenic |
| TTACAAATGAAATTTCTTCC+AGG | 0.361641 | 1_4:+47949918 | None:intergenic |
| CTTGAGATGTCATACTCTTC+AGG | 0.376180 | 1_4:+47950046 | None:intergenic |
| AGGAGGAAGCATTGGTCTAA+TGG | 0.380070 | 1_4:-47952310 | Msa0166590:exon |
| AAATTTCATTTGTAAAGTAC+TGG | 0.382613 | 1_4:-47949910 | Msa0166590:three_prime_UTR |
| AAAAGAGTTAGTGAAGAAAC+TGG | 0.405307 | 1_4:-47950234 | Msa0166590:CDS |
| ACAAACCATTAAAATTGATT+GGG | 0.413221 | 1_4:+47952366 | None:intergenic |
| AATTACATGCAGGTGGTTAT+GGG | 0.415602 | 1_4:-47950538 | Msa0166590:intron |
| GATGGTGGAAGACATGTCAT+AGG | 0.434367 | 1_4:-47952264 | Msa0166590:CDS |
| CTCTCTAGGCATGAGTGTCT+TGG | 0.437074 | 1_4:+47952100 | None:intergenic |
| AAGCATTGGTCTAATGGGTT+CGG | 0.439439 | 1_4:-47952304 | Msa0166590:exon |
| GTCATAACCTGGGCTCAACT+TGG | 0.447889 | 1_4:-47950494 | Msa0166590:CDS |
| GGAGGAAGCATTGGTCTAAT+GGG | 0.451429 | 1_4:-47952309 | Msa0166590:exon |
| TCTCTAGGCATGAGTGTCTT+GGG | 0.451553 | 1_4:+47952101 | None:intergenic |
| CTTCTAAGTTGTAAGTACTA+GGG | 0.474591 | 1_4:-47949829 | Msa0166590:three_prime_UTR |
| GTGGGACTAGTAAATGTTGA+TGG | 0.489170 | 1_4:-47950353 | Msa0166590:CDS |
| TAGAAATAGATTACTTAAAG+GGG | 0.491976 | 1_4:+47949769 | None:intergenic |
| ATTGATCTAGTTTATGGAGG+AGG | 0.513882 | 1_4:-47952327 | Msa0166590:five_prime_UTR |
| TAGCTCAGGCTAACCTGGTA+AGG | 0.520557 | 1_4:+47951560 | None:intergenic |
| TGACTTCAAGAAGCTCCTCT+AGG | 0.523303 | 1_4:+47950513 | None:intergenic |
| ACTTGGGATTCATGACAAAC+CGG | 0.526362 | 1_4:-47950477 | Msa0166590:intron |
| CATCGACAAAGCTGTGGAAG+AGG | 0.532010 | 1_4:-47950306 | Msa0166590:CDS |
| AGCTTCTTGAAGTCATAACC+TGG | 0.532925 | 1_4:-47950505 | Msa0166590:CDS |
| GTTTATGGAGGAGGAAGCAT+TGG | 0.534440 | 1_4:-47952318 | Msa0166590:five_prime_UTR |
| GCGTTGCTTCGAAGTTGAGC+TGG | 0.538596 | 1_4:-47950093 | Msa0166590:CDS |
| GTTTCACAAGCTGTTCATGA+TGG | 0.539577 | 1_4:-47952282 | Msa0166590:CDS |
| TTTGCAGCTAACTGGTGAAA+CGG | 0.542234 | 1_4:-47951658 | Msa0166590:intron |
| GAAGCAACGCCTTCGTGACA+AGG | 0.544836 | 1_4:+47950106 | None:intergenic |
| CTGTAGCAGATATGCATCAA+AGG | 0.549564 | 1_4:-47951620 | Msa0166590:CDS |
| AATTTCATTTGTAAAGTACT+GGG | 0.549840 | 1_4:-47949909 | Msa0166590:three_prime_UTR |
| GACTTCAAGAAGCTCCTCTA+GGG | 0.553887 | 1_4:+47950514 | None:intergenic |
| TCATAACCTGGGCTCAACTT+GGG | 0.556522 | 1_4:-47950493 | Msa0166590:CDS |
| CTGAAGAGTATGACATCTCA+AGG | 0.559781 | 1_4:-47950045 | Msa0166590:CDS |
| GCATCAAAGGAAGGCAGAGA+TGG | 0.563589 | 1_4:-47951607 | Msa0166590:CDS |
| TTCGAAGTTGAGCTGGCAGA+TGG | 0.564883 | 1_4:-47950086 | Msa0166590:CDS |
| TTCTAAGTTGTAAGTACTAG+GGG | 0.569146 | 1_4:-47949828 | Msa0166590:three_prime_UTR |
| GAGGTGGAAAGAAGCTATTG+TGG | 0.570153 | 1_4:-47949965 | Msa0166590:three_prime_UTR |
| TTCATTCATCGACAAAGCTG+TGG | 0.574795 | 1_4:-47950312 | Msa0166590:CDS |
| CTAGTACTTACAACTTAGAA+GGG | 0.576646 | 1_4:+47949831 | None:intergenic |
| AATATTGATCTAGTTTATGG+AGG | 0.578824 | 1_4:-47952330 | Msa0166590:five_prime_UTR |
| TCACAAGCTGTTCATGATGG+TGG | 0.582768 | 1_4:-47952279 | Msa0166590:CDS |
| ATGAATCCCAAGTTGAGCCC+AGG | 0.585691 | 1_4:+47950487 | None:intergenic |
| ATCGACAAAGCTGTGGAAGA+GGG | 0.594245 | 1_4:-47950305 | Msa0166590:CDS |
| GATGTCATACTCTTCAGGAT+AGG | 0.595686 | 1_4:+47950051 | None:intergenic |
| TTTAGTTTACTTGATGTGCA+AGG | 0.599214 | 1_4:-47950012 | Msa0166590:three_prime_UTR |
| CAGCTAACTGGTGAAACGGT+GGG | 0.599390 | 1_4:-47951654 | Msa0166590:CDS |
| ATGGTGGAAGACATGTCATA+GGG | 0.603354 | 1_4:-47952263 | Msa0166590:intron |
| GCAGCTAACTGGTGAAACGG+TGG | 0.613685 | 1_4:-47951655 | Msa0166590:intron |
| CAAGACACTCATGCCTAGAG+AGG | 0.614658 | 1_4:-47952099 | Msa0166590:intron |
| AGCAGATATGCATCAAAGGA+AGG | 0.629113 | 1_4:-47951616 | Msa0166590:CDS |
| GCTTCTTGAAGTCATAACCT+GGG | 0.658696 | 1_4:-47950504 | Msa0166590:CDS |
| GATTATGTTCCTTGTCACGA+AGG | 0.661791 | 1_4:-47950115 | Msa0166590:CDS |
| TAGGTGCTGATACAATTATG+TGG | 0.681813 | 1_4:+47950261 | None:intergenic |
| TCTAAGTTGTAAGTACTAGG+GGG | 0.696829 | 1_4:-47949827 | Msa0166590:three_prime_UTR |
| AGAGTTAGTGAAGAAACTGG+AGG | 0.710150 | 1_4:-47950231 | Msa0166590:intron |
| AGGTGGTTATGGGACCCTAG+AGG | 0.728214 | 1_4:-47950528 | Msa0166590:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAGTAATAATAAAGAAA+TGG | - | chr1_4:47950299-47950318 | Msa0166590:CDS | 10.0% |
| !! | TGAATTAGTTAATAATATTT+AGG | + | chr1_4:47951720-47951739 | None:intergenic | 10.0% |
| !! | ATGAAAAAAGTGAATAATAA+AGG | + | chr1_4:47950151-47950170 | None:intergenic | 15.0% |
| !!! | TTGTTAAAGTTATTTTCTTT+TGG | - | chr1_4:47950251-47950270 | Msa0166590:CDS | 15.0% |
| !!! | TGTTAAAGTTATTTTCTTTT+GGG | - | chr1_4:47950252-47950271 | Msa0166590:CDS | 15.0% |
| !!! | TTTTAGTAATTAAGTTTGTT+AGG | + | chr1_4:47950740-47950759 | None:intergenic | 15.0% |
| !! | TAACAAACTTAATTACTAAA+AGG | - | chr1_4:47950739-47950758 | Msa0166590:intron | 15.0% |
| !! | TTAGAAATAGATTACTTAAA+GGG | + | chr1_4:47952377-47952396 | None:intergenic | 15.0% |
| !! | TTTAGAAATAGATTACTTAA+AGG | + | chr1_4:47952378-47952397 | None:intergenic | 15.0% |
| !! | ACAAACCATTAAAATTGATT+GGG | + | chr1_4:47949779-47949798 | None:intergenic | 20.0% |
| !!! | AGAAATATTGATCTAGTTTA+TGG | - | chr1_4:47949809-47949828 | Msa0166590:three_prime_UTR | 20.0% |
| !! | TCATAAAAATGAAAACTTTG+AGG | + | chr1_4:47949918-47949937 | None:intergenic | 20.0% |
| !! | TTAACTTAAAATACAGAACA+AGG | + | chr1_4:47950206-47950225 | None:intergenic | 20.0% |
| !!! | AATTTTAGCCAAATATGTTA+GGG | + | chr1_4:47950982-47951001 | None:intergenic | 20.0% |
| !!! | AAATTTTAGCCAAATATGTT+AGG | + | chr1_4:47950983-47951002 | None:intergenic | 20.0% |
| !! | GAATTTAATGCAAAAAACAT+AGG | + | chr1_4:47951568-47951587 | None:intergenic | 20.0% |
| !! | AAATTTCATTTGTAAAGTAC+TGG | - | chr1_4:47952232-47952251 | Msa0166590:intron | 20.0% |
| !!! | AATTTCATTTGTAAAGTACT+GGG | - | chr1_4:47952233-47952252 | Msa0166590:intron | 20.0% |
| !!! | AGTAATTTCACATTTTTTTC+AGG | + | chr1_4:47952264-47952283 | None:intergenic | 20.0% |
| !! | TAGAAATAGATTACTTAAAG+GGG | + | chr1_4:47952376-47952395 | None:intergenic | 20.0% |
| !! | CTTATCCCAATCAATTTTAA+TGG | - | chr1_4:47949771-47949790 | Msa0166590:three_prime_UTR | 25.0% |
| ! | CACAAACCATTAAAATTGAT+TGG | + | chr1_4:47949780-47949799 | None:intergenic | 25.0% |
| !!! | TCAATTTTAATGGTTTGTGA+AGG | - | chr1_4:47949781-47949800 | Msa0166590:three_prime_UTR | 25.0% |
| !! | AATATTGATCTAGTTTATGG+AGG | - | chr1_4:47949812-47949831 | Msa0166590:three_prime_UTR | 25.0% |
| ! | AAAATACAGAACAAGGAAAT+AGG | + | chr1_4:47950199-47950218 | None:intergenic | 25.0% |
| !!! | AAAGTTATTTTCTTTTGGGT+AGG | - | chr1_4:47950256-47950275 | Msa0166590:CDS | 25.0% |
| ! | TGGCAACAATATTAATGATT+AGG | + | chr1_4:47950774-47950793 | None:intergenic | 25.0% |
| ! | AATCATTAATATTGTTGCCA+AGG | - | chr1_4:47950774-47950793 | Msa0166590:intron | 25.0% |
| ! | TAGTCAAATAAATATGACAC+TGG | - | chr1_4:47950870-47950889 | Msa0166590:intron | 25.0% |
| !!! | TTTTCAAAGGCTTTTATTTC+TGG | - | chr1_4:47951200-47951219 | Msa0166590:intron | 25.0% |
| ! | AAAAAAAATGATCTGACCAT+TGG | - | chr1_4:47951436-47951455 | Msa0166590:intron | 25.0% |
| !! | ATTTAGGTTCCTTAACAAAA+TGG | + | chr1_4:47951704-47951723 | None:intergenic | 25.0% |
| ! | AATGTCAAATCTAGTTAAAC+TGG | + | chr1_4:47951756-47951775 | None:intergenic | 25.0% |
| ! | TATTATGTTTGATTCATCAC+AGG | - | chr1_4:47952005-47952024 | Msa0166590:intron | 25.0% |
| ! | TTACAAATGAAATTTCTTCC+AGG | + | chr1_4:47952227-47952246 | None:intergenic | 25.0% |
| !! | GAAATCAGTTTTCAAAAGAA+GGG | + | chr1_4:47952292-47952311 | None:intergenic | 25.0% |
| TCAAGCACAATAGACTATTA+TGG | + | chr1_4:47949950-47949969 | None:intergenic | 30.0% | |
| !!! | ACTCTTTTGTTTTACTTCAG+TGG | - | chr1_4:47950330-47950349 | Msa0166590:CDS | 30.0% |
| AAGAATAGTACACCTTACTT+TGG | - | chr1_4:47950605-47950624 | Msa0166590:intron | 30.0% | |
| AAGCATTAAAGACTGAGATA+TGG | + | chr1_4:47950707-47950726 | None:intergenic | 30.0% | |
| ACAATATTAATGATTAGGCG+TGG | + | chr1_4:47950769-47950788 | None:intergenic | 30.0% | |
| ACAGTGTATCAAAATTACCT+TGG | + | chr1_4:47950794-47950813 | None:intergenic | 30.0% | |
| TCTCTAATCATCATAGCATT+AGG | + | chr1_4:47950919-47950938 | None:intergenic | 30.0% | |
| AGGAAAGTAGATGCAAAAAA+TGG | + | chr1_4:47951051-47951070 | None:intergenic | 30.0% | |
| !!! | TTTTTTGCATCTACTTTCCT+TGG | - | chr1_4:47951051-47951070 | Msa0166590:intron | 30.0% |
| ! | TTTTGTACCAAACTTACTCA+TGG | - | chr1_4:47951085-47951104 | Msa0166590:intron | 30.0% |
| ATCAAAACCATGAGTAAGTT+TGG | + | chr1_4:47951095-47951114 | None:intergenic | 30.0% | |
| !!! | CTCATGGTTTTGATATAGAA+AGG | - | chr1_4:47951101-47951120 | Msa0166590:intron | 30.0% |
| ! | GAAATAGTGCTTCTTTTCAA+AGG | - | chr1_4:47951187-47951206 | Msa0166590:intron | 30.0% |
| AAATTAGTGACTGTTACAGA+AGG | - | chr1_4:47951249-47951268 | Msa0166590:intron | 30.0% | |
| GTGCATTATGTAATCAATCT+CGG | - | chr1_4:47951368-47951387 | Msa0166590:intron | 30.0% | |
| GTTGTTCGATTTCAAATCAA+TGG | + | chr1_4:47951394-47951413 | None:intergenic | 30.0% | |
| TGTGTGCCATAATTATTGTA+GGG | - | chr1_4:47951487-47951506 | Msa0166590:intron | 30.0% | |
| CAGATTCCCTACAATAATTA+TGG | + | chr1_4:47951496-47951515 | None:intergenic | 30.0% | |
| TTATTGTAGGGAATCTGTTT+CGG | - | chr1_4:47951499-47951518 | Msa0166590:intron | 30.0% | |
| CTTAAGGTCATCTAATAAAC+TGG | + | chr1_4:47951533-47951552 | None:intergenic | 30.0% | |
| AACTTATGCAAATTACATGC+AGG | - | chr1_4:47951594-47951613 | Msa0166590:CDS | 30.0% | |
| AAATGGTACAAGTCAATTAC+CGG | + | chr1_4:47951687-47951706 | None:intergenic | 30.0% | |
| !! | TGACTTGTACCATTTTGTTA+AGG | - | chr1_4:47951692-47951711 | Msa0166590:intron | 30.0% |
| ! | TTCACTAACTCTTTTGATGT+AGG | + | chr1_4:47951903-47951922 | None:intergenic | 30.0% |
| AAAAGAGTTAGTGAAGAAAC+TGG | - | chr1_4:47951908-47951927 | Msa0166590:intron | 30.0% | |
| ! | TTTAGTTTACTTGATGTGCA+AGG | - | chr1_4:47952130-47952149 | Msa0166590:intron | 30.0% |
| ! | GAGACTAGATAGAATTTTAG+AGG | - | chr1_4:47952158-47952177 | Msa0166590:intron | 30.0% |
| !! | ACTAGATAGAATTTTAGAGG+TGG | - | chr1_4:47952161-47952180 | Msa0166590:intron | 30.0% |
| CAGGAAAGAAAAACAGAATA+GGG | + | chr1_4:47952208-47952227 | None:intergenic | 30.0% | |
| ! | GGAAATCAGTTTTCAAAAGA+AGG | + | chr1_4:47952293-47952312 | None:intergenic | 30.0% |
| CTAGTACTTACAACTTAGAA+GGG | + | chr1_4:47952314-47952333 | None:intergenic | 30.0% | |
| CTTCTAAGTTGTAAGTACTA+GGG | - | chr1_4:47952313-47952332 | Msa0166590:exon | 30.0% | |
| TTCTAAGTTGTAAGTACTAG+GGG | - | chr1_4:47952314-47952333 | Msa0166590:five_prime_UTR | 30.0% | |
| ! | ATTGATCTAGTTTATGGAGG+AGG | - | chr1_4:47949815-47949834 | Msa0166590:three_prime_UTR | 35.0% |
| GACAAATAAACCAGTGTCAA+TGG | + | chr1_4:47949995-47950014 | None:intergenic | 35.0% | |
| CTGTTCCATTTCTTATCCAT+TGG | - | chr1_4:47950455-47950474 | Msa0166590:intron | 35.0% | |
| AGGATCCAATGGATAAGAAA+TGG | + | chr1_4:47950463-47950482 | None:intergenic | 35.0% | |
| TCTGTAATGCAACCAAAGTA+AGG | + | chr1_4:47950620-47950639 | None:intergenic | 35.0% | |
| AAAGACTGAGATATGGTCAA+TGG | + | chr1_4:47950700-47950719 | None:intergenic | 35.0% | |
| ! | GCTTTGACTCTGAAAAACTA+TGG | - | chr1_4:47951009-47951028 | Msa0166590:intron | 35.0% |
| TCTGAAAAACTATGGTTCTC+TGG | - | chr1_4:47951017-47951036 | Msa0166590:intron | 35.0% | |
| ACAAAAACGTCATGATTCCA+AGG | + | chr1_4:47951071-47951090 | None:intergenic | 35.0% | |
| CACTATTTCATGACATGTAC+AGG | + | chr1_4:47951176-47951195 | None:intergenic | 35.0% | |
| ACTTGTCATTCACTCTTTCT+TGG | - | chr1_4:47951291-47951310 | Msa0166590:intron | 35.0% | |
| CTTGTCATTCACTCTTTCTT+GGG | - | chr1_4:47951292-47951311 | Msa0166590:intron | 35.0% | |
| CTGTGTGCCATAATTATTGT+AGG | - | chr1_4:47951486-47951505 | Msa0166590:intron | 35.0% | |
| TGCAAAAAACATAGGAGAAC+AGG | + | chr1_4:47951560-47951579 | None:intergenic | 35.0% | |
| TTATGCAAATTACATGCAGG+TGG | - | chr1_4:47951597-47951616 | Msa0166590:CDS | 35.0% | |
| AAATTACATGCAGGTGGTTA+TGG | - | chr1_4:47951603-47951622 | Msa0166590:CDS | 35.0% | |
| AATTACATGCAGGTGGTTAT+GGG | - | chr1_4:47951604-47951623 | Msa0166590:CDS | 35.0% | |
| !! | TAGGTGCTGATACAATTATG+TGG | + | chr1_4:47951884-47951903 | None:intergenic | 35.0% |
| CCAGGAAAGAAAAACAGAAT+AGG | + | chr1_4:47952209-47952228 | None:intergenic | 35.0% | |
| !! | CCTATTCTGTTTTTCTTTCC+TGG | - | chr1_4:47952206-47952225 | Msa0166590:intron | 35.0% |
| CCTAGTACTTACAACTTAGA+AGG | + | chr1_4:47952315-47952334 | None:intergenic | 35.0% | |
| CCTTCTAAGTTGTAAGTACT+AGG | - | chr1_4:47952312-47952331 | Msa0166590:exon | 35.0% | |
| TCTAAGTTGTAAGTACTAGG+GGG | - | chr1_4:47952315-47952334 | Msa0166590:five_prime_UTR | 35.0% | |
| !! | AAGCATTGGTCTAATGGGTT+CGG | - | chr1_4:47949838-47949857 | Msa0166590:three_prime_UTR | 40.0% |
| GTTTCACAAGCTGTTCATGA+TGG | - | chr1_4:47949860-47949879 | Msa0166590:three_prime_UTR | 40.0% | |
| ! | ATGGTGGAAGACATGTCATA+GGG | - | chr1_4:47949879-47949898 | Msa0166590:three_prime_UTR | 40.0% |
| ATCTCTTTGTCCATTGACAC+TGG | - | chr1_4:47949982-47950001 | Msa0166590:three_prime_UTR | 40.0% | |
| ! | CTTTTCTCACATACCTCTCT+AGG | + | chr1_4:47950059-47950078 | None:intergenic | 40.0% |
| TTCAGTGGCTTATAATGTGC+TGG | - | chr1_4:47950345-47950364 | Msa0166590:CDS | 40.0% | |
| TAGCTGCAAAAAGGATCCAA+TGG | + | chr1_4:47950474-47950493 | None:intergenic | 40.0% | |
| TTCACCAGTTAGCTGCAAAA+AGG | + | chr1_4:47950483-47950502 | None:intergenic | 40.0% | |
| TTTGCAGCTAACTGGTGAAA+CGG | - | chr1_4:47950484-47950503 | Msa0166590:CDS | 40.0% | |
| CTGTAGCAGATATGCATCAA+AGG | - | chr1_4:47950522-47950541 | Msa0166590:CDS | 40.0% | |
| AGCAGATATGCATCAAAGGA+AGG | - | chr1_4:47950526-47950545 | Msa0166590:CDS | 40.0% | |
| ! | GATGCTTTTATTGCCTTACC+AGG | - | chr1_4:47950569-47950588 | Msa0166590:intron | 40.0% |
| ! | GGTGTACTATTCTTTAGCTC+AGG | + | chr1_4:47950599-47950618 | None:intergenic | 40.0% |
| AGAGAGTGACTCTTCAAAAC+TGG | - | chr1_4:47950934-47950953 | Msa0166590:intron | 40.0% | |
| GGTGATAAGGGGTCTTAATT+TGG | - | chr1_4:47951346-47951365 | Msa0166590:intron | 40.0% | |
| !! | TGACCATTGGTTTAGATCGA+AGG | - | chr1_4:47951449-47951468 | Msa0166590:intron | 40.0% |
| !! | GACCATTGGTTTAGATCGAA+GGG | - | chr1_4:47951450-47951469 | Msa0166590:intron | 40.0% |
| TAGGAGAACAGGAACACTTA+AGG | + | chr1_4:47951549-47951568 | None:intergenic | 40.0% | |
| AGCTTCTTGAAGTCATAACC+TGG | - | chr1_4:47951637-47951656 | Msa0166590:CDS | 40.0% | |
| GCTTCTTGAAGTCATAACCT+GGG | - | chr1_4:47951638-47951657 | Msa0166590:CDS | 40.0% | |
| ACTTGGGATTCATGACAAAC+CGG | - | chr1_4:47951665-47951684 | Msa0166590:intron | 40.0% | |
| ! | GTGGGACTAGTAAATGTTGA+TGG | - | chr1_4:47951789-47951808 | Msa0166590:intron | 40.0% |
| TTCATTCATCGACAAAGCTG+TGG | - | chr1_4:47951830-47951849 | Msa0166590:intron | 40.0% | |
| AGAGTTAGTGAAGAAACTGG+AGG | - | chr1_4:47951911-47951930 | Msa0166590:intron | 40.0% | |
| GATTATGTTCCTTGTCACGA+AGG | - | chr1_4:47952027-47952046 | Msa0166590:intron | 40.0% | |
| GATGTCATACTCTTCAGGAT+AGG | + | chr1_4:47952094-47952113 | None:intergenic | 40.0% | |
| CTTGAGATGTCATACTCTTC+AGG | + | chr1_4:47952099-47952118 | None:intergenic | 40.0% | |
| ! | CTGAAGAGTATGACATCTCA+AGG | - | chr1_4:47952097-47952116 | Msa0166590:intron | 40.0% |
| ! | GTTTATGGAGGAGGAAGCAT+TGG | - | chr1_4:47949824-47949843 | Msa0166590:three_prime_UTR | 45.0% |
| !! | AGGAGGAAGCATTGGTCTAA+TGG | - | chr1_4:47949832-47949851 | Msa0166590:three_prime_UTR | 45.0% |
| !! | GGAGGAAGCATTGGTCTAAT+GGG | - | chr1_4:47949833-47949852 | Msa0166590:three_prime_UTR | 45.0% |
| TCACAAGCTGTTCATGATGG+TGG | - | chr1_4:47949863-47949882 | Msa0166590:three_prime_UTR | 45.0% | |
| !! | GATGGTGGAAGACATGTCAT+AGG | - | chr1_4:47949878-47949897 | Msa0166590:three_prime_UTR | 45.0% |
| TCTCTAGGCATGAGTGTCTT+GGG | + | chr1_4:47950044-47950063 | None:intergenic | 45.0% | |
| ! | GGATCCTTTTTGCAGCTAAC+TGG | - | chr1_4:47950476-47950495 | Msa0166590:intron | 45.0% |
| ! | TTCTTTAGCTCAGGCTAACC+TGG | + | chr1_4:47950590-47950609 | None:intergenic | 45.0% |
| GCCTGAGACCCTAACATATT+TGG | - | chr1_4:47950971-47950990 | Msa0166590:intron | 45.0% | |
| GCCAAATATGTTAGGGTCTC+AGG | + | chr1_4:47950975-47950994 | None:intergenic | 45.0% | |
| AGTGACTGTTACAGAAGGCA+AGG | - | chr1_4:47951254-47951273 | Msa0166590:intron | 45.0% | |
| CTCTTCCCTCTATCTTGCAA+GGG | + | chr1_4:47951320-47951339 | None:intergenic | 45.0% | |
| TCTCTTCCCTCTATCTTGCA+AGG | + | chr1_4:47951321-47951340 | None:intergenic | 45.0% | |
| AAGATAGAGGGAAGAGAGAG+AGG | - | chr1_4:47951324-47951343 | Msa0166590:intron | 45.0% | |
| AGATAGAGGGAAGAGAGAGA+GGG | - | chr1_4:47951325-47951344 | Msa0166590:intron | 45.0% | |
| GAAGAGAGAGAGGGTGATAA+GGG | - | chr1_4:47951334-47951353 | Msa0166590:intron | 45.0% | |
| AAGAGAGAGAGGGTGATAAG+GGG | - | chr1_4:47951335-47951354 | Msa0166590:intron | 45.0% | |
| GACCCTTCGATCTAAACCAA+TGG | + | chr1_4:47951455-47951474 | None:intergenic | 45.0% | |
| GACTTCAAGAAGCTCCTCTA+GGG | + | chr1_4:47951631-47951650 | None:intergenic | 45.0% | |
| TGACTTCAAGAAGCTCCTCT+AGG | + | chr1_4:47951632-47951651 | None:intergenic | 45.0% | |
| TCATAACCTGGGCTCAACTT+GGG | - | chr1_4:47951649-47951668 | Msa0166590:CDS | 45.0% | |
| TTTGACATTCCACAACTCGC+AGG | - | chr1_4:47951767-47951786 | Msa0166590:intron | 45.0% | |
| ATCGACAAAGCTGTGGAAGA+GGG | - | chr1_4:47951837-47951856 | Msa0166590:intron | 45.0% | |
| ACAATTATGTGGCGCGCATT+TGG | + | chr1_4:47951873-47951892 | None:intergenic | 45.0% | |
| GAGGTGGAAAGAAGCTATTG+TGG | - | chr1_4:47952177-47952196 | Msa0166590:intron | 45.0% | |
| CTCTCTAGGCATGAGTGTCT+TGG | + | chr1_4:47950045-47950064 | None:intergenic | 50.0% | |
| CAAGACACTCATGCCTAGAG+AGG | - | chr1_4:47950043-47950062 | Msa0166590:CDS | 50.0% | |
| CAGCTAACTGGTGAAACGGT+GGG | - | chr1_4:47950488-47950507 | Msa0166590:CDS | 50.0% | |
| GCATCAAAGGAAGGCAGAGA+TGG | - | chr1_4:47950535-47950554 | Msa0166590:intron | 50.0% | |
| TAGCTCAGGCTAACCTGGTA+AGG | + | chr1_4:47950585-47950604 | None:intergenic | 50.0% | |
| TTAGGGTCTCAGGCAAAGTC+AGG | + | chr1_4:47950965-47950984 | None:intergenic | 50.0% | |
| TGGGATCCCTTGCAAGATAG+AGG | - | chr1_4:47951311-47951330 | Msa0166590:intron | 50.0% | |
| GGGATCCCTTGCAAGATAGA+GGG | - | chr1_4:47951312-47951331 | Msa0166590:intron | 50.0% | |
| GGAAGAGAGAGAGGGTGATA+AGG | - | chr1_4:47951333-47951352 | Msa0166590:intron | 50.0% | |
| GTCATAACCTGGGCTCAACT+TGG | - | chr1_4:47951648-47951667 | Msa0166590:CDS | 50.0% | |
| ! | ATGAATCCCAAGTTGAGCCC+AGG | + | chr1_4:47951658-47951677 | None:intergenic | 50.0% |
| ACATTCCACAACTCGCAGGT+GGG | - | chr1_4:47951771-47951790 | Msa0166590:intron | 50.0% | |
| CATCGACAAAGCTGTGGAAG+AGG | - | chr1_4:47951836-47951855 | Msa0166590:intron | 50.0% | |
| TTCGAAGTTGAGCTGGCAGA+TGG | - | chr1_4:47952056-47952075 | Msa0166590:intron | 50.0% | |
| GCAGCTAACTGGTGAAACGG+TGG | - | chr1_4:47950487-47950506 | Msa0166590:CDS | 55.0% | |
| AGGTGGTTATGGGACCCTAG+AGG | - | chr1_4:47951614-47951633 | Msa0166590:CDS | 55.0% | |
| GACATTCCACAACTCGCAGG+TGG | - | chr1_4:47951770-47951789 | Msa0166590:intron | 55.0% | |
| GAAGCAACGCCTTCGTGACA+AGG | + | chr1_4:47952039-47952058 | None:intergenic | 55.0% | |
| GCGTTGCTTCGAAGTTGAGC+TGG | - | chr1_4:47952049-47952068 | Msa0166590:intron | 55.0% | |
| CTAGTCCCACCTGCGAGTTG+TGG | + | chr1_4:47951779-47951798 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 47949763 | 47952401 | 47949763 | ID=Msa0166590;Name=Msa0166590 |
| chr1_4 | mRNA | 47949763 | 47952401 | 47949763 | ID=Msa0166590-mRNA-1;Parent=Msa0166590;Name=Msa0166590-mRNA-1;_AED=0.10;_eAED=0.10;_QI=88|1|1|1|1|1|6|279|163 |
| chr1_4 | exon | 47949763 | 47950137 | 47949763 | ID=Msa0166590-mRNA-1:exon:13968;Parent=Msa0166590-mRNA-1 |
| chr1_4 | exon | 47950232 | 47950375 | 47950232 | ID=Msa0166590-mRNA-1:exon:13967;Parent=Msa0166590-mRNA-1 |
| chr1_4 | exon | 47950478 | 47950548 | 47950478 | ID=Msa0166590-mRNA-1:exon:13966;Parent=Msa0166590-mRNA-1 |
| chr1_4 | exon | 47951574 | 47951673 | 47951574 | ID=Msa0166590-mRNA-1:exon:13965;Parent=Msa0166590-mRNA-1 |
| chr1_4 | exon | 47952100 | 47952130 | 47952100 | ID=Msa0166590-mRNA-1:exon:13964;Parent=Msa0166590-mRNA-1 |
| chr1_4 | exon | 47952264 | 47952401 | 47952264 | ID=Msa0166590-mRNA-1:exon:13963;Parent=Msa0166590-mRNA-1 |
| chr1_4 | five_prime_UTR | 47952314 | 47952401 | 47952314 | ID=Msa0166590-mRNA-1:five_prime_utr;Parent=Msa0166590-mRNA-1 |
| chr1_4 | CDS | 47952264 | 47952313 | 47952264 | ID=Msa0166590-mRNA-1:cds;Parent=Msa0166590-mRNA-1 |
| chr1_4 | CDS | 47952100 | 47952130 | 47952100 | ID=Msa0166590-mRNA-1:cds;Parent=Msa0166590-mRNA-1 |
| chr1_4 | CDS | 47951574 | 47951673 | 47951574 | ID=Msa0166590-mRNA-1:cds;Parent=Msa0166590-mRNA-1 |
| chr1_4 | CDS | 47950478 | 47950548 | 47950478 | ID=Msa0166590-mRNA-1:cds;Parent=Msa0166590-mRNA-1 |
| chr1_4 | CDS | 47950232 | 47950375 | 47950232 | ID=Msa0166590-mRNA-1:cds;Parent=Msa0166590-mRNA-1 |
| chr1_4 | CDS | 47950042 | 47950137 | 47950042 | ID=Msa0166590-mRNA-1:cds;Parent=Msa0166590-mRNA-1 |
| chr1_4 | three_prime_UTR | 47949763 | 47950041 | 47949763 | ID=Msa0166590-mRNA-1:three_prime_utr;Parent=Msa0166590-mRNA-1 |
| Gene Sequence |
| Protein sequence |
