Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0026130 | sp|Q8L8B8|LOG3_ARATH | 85.581 | 215 | 29 | 2 | 1 | 214 | 1 | 214 | 7.20e-135 | 380 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001450 | Msa0026130 | 0.855708 | 5.262730e-62 | -8.615850e-47 |
| Msa0003700 | Msa0026130 | 0.806538 | 7.834737e-50 | -8.615850e-47 |
| Msa0007480 | Msa0026130 | 0.811212 | 7.838243e-51 | -8.615850e-47 |
| Msa0016670 | Msa0026130 | 0.816731 | 4.753976e-52 | -8.615850e-47 |
| Msa0026130 | Msa0027230 | 0.840398 | 8.905454e-58 | -8.615850e-47 |
| Msa0026130 | Msa0027260 | 0.834810 | 2.416155e-56 | -8.615850e-47 |
| Msa0026130 | Msa0028420 | 0.820274 | 7.480015e-53 | -8.615850e-47 |
| Msa0026130 | Msa0029630 | 0.803740 | 3.017279e-49 | -8.615850e-47 |
| Msa0026130 | Msa0048180 | 0.823221 | 1.556441e-53 | -8.615850e-47 |
| Msa0026130 | Msa0055190 | 0.800467 | 1.421779e-48 | -8.615850e-47 |
| Msa0026130 | Msa0069330 | 0.839484 | 1.541633e-57 | -8.615850e-47 |
| Msa0026130 | Msa0072370 | 0.802738 | 4.866057e-49 | -8.615850e-47 |
| Msa0026130 | Msa0073670 | 0.883090 | 6.022611e-71 | -8.615850e-47 |
| Msa0026130 | Msa0075220 | 0.816054 | 6.739475e-52 | -8.615850e-47 |
| Msa0026130 | Msa0076040 | 0.825615 | 4.255352e-54 | -8.615850e-47 |
| Msa0026130 | Msa0081520 | 0.813099 | 3.038576e-51 | -8.615850e-47 |
| Msa0026130 | Msa0097810 | 0.807880 | 4.071870e-50 | -8.615850e-47 |
| Msa0026130 | Msa0100740 | 0.802984 | 4.328115e-49 | -8.615850e-47 |
| Msa0026130 | Msa0104550 | 0.832360 | 9.882881e-56 | -8.615850e-47 |
| Msa0026130 | Msa0110970 | 0.816233 | 6.146678e-52 | -8.615850e-47 |
| Msa0026130 | Msa0112790 | 0.962858 | 2.214434e-121 | -8.615850e-47 |
| Msa0026130 | Msa0115160 | 0.823615 | 1.259050e-53 | -8.615850e-47 |
| Msa0026130 | Msa0118570 | 0.809385 | 1.942750e-50 | -8.615850e-47 |
| Msa0026130 | Msa0122970 | 0.839699 | 1.355704e-57 | -8.615850e-47 |
| Msa0026130 | Msa0125450 | 0.812941 | 3.290720e-51 | -8.615850e-47 |
| Msa0026130 | Msa0125540 | 0.816825 | 4.528851e-52 | -8.615850e-47 |
| Msa0026130 | Msa0128860 | 0.828714 | 7.711507e-55 | -8.615850e-47 |
| Msa0026130 | Msa0134180 | 0.801625 | 8.243588e-49 | -8.615850e-47 |
| Msa0026130 | Msa0134610 | 0.837159 | 6.126967e-57 | -8.615850e-47 |
| Msa0026130 | Msa0140820 | 0.839986 | 1.140850e-57 | -8.615850e-47 |
| Msa0026130 | Msa0150570 | 0.809654 | 1.700426e-50 | -8.615850e-47 |
| Msa0026130 | Msa0166590 | 0.997330 | 1.187363e-240 | -8.615850e-47 |
| Msa0026130 | Msa0168500 | 0.811779 | 5.901769e-51 | -8.615850e-47 |
| Msa0026130 | Msa0173890 | 0.810404 | 1.172132e-50 | -8.615850e-47 |
| Msa0026130 | Msa0174730 | 0.829141 | 6.078213e-55 | -8.615850e-47 |
| Msa0026130 | Msa0181610 | 0.821240 | 4.485984e-53 | -8.615850e-47 |
| Msa0026130 | Msa0182620 | -0.826013 | 3.423304e-54 | -8.615850e-47 |
| Msa0026130 | Msa0196690 | 0.805612 | 1.227160e-49 | -8.615850e-47 |
| Msa0026130 | Msa0197420 | 0.844418 | 7.656177e-59 | -8.615850e-47 |
| Msa0026130 | Msa0197930 | 0.800255 | 1.570339e-48 | -8.615850e-47 |
| Msa0026130 | Msa0199880 | 0.820615 | 6.244826e-53 | -8.615850e-47 |
| Msa0026130 | Msa0215800 | 0.804128 | 2.505939e-49 | -8.615850e-47 |
| Msa0026130 | Msa0223080 | 0.800506 | 1.396149e-48 | -8.615850e-47 |
| Msa0026130 | Msa0229230 | 0.800551 | 1.366890e-48 | -8.615850e-47 |
| Msa0026130 | Msa0229760 | 0.804333 | 2.271390e-49 | -8.615850e-47 |
| Msa0026130 | Msa0232010 | 0.801778 | 7.667732e-49 | -8.615850e-47 |
| Msa0026130 | Msa0232080 | 0.803263 | 3.789453e-49 | -8.615850e-47 |
| Msa0026130 | Msa0239190 | 0.835501 | 1.617861e-56 | -8.615850e-47 |
| Msa0026130 | Msa0239570 | 0.806641 | 7.451698e-50 | -8.615850e-47 |
| Msa0026130 | Msa0255090 | 0.841784 | 3.852400e-58 | -8.615850e-47 |
| Msa0026130 | Msa0259380 | 0.834571 | 2.774578e-56 | -8.615850e-47 |
| Msa0026130 | Msa0267110 | 0.806819 | 6.836471e-50 | -8.615850e-47 |
| Msa0026130 | Msa0277180 | 0.816212 | 6.214107e-52 | -8.615850e-47 |
| Msa0026130 | Msa0280610 | 0.818298 | 2.108826e-52 | -8.615850e-47 |
| Msa0026130 | Msa0292400 | 0.824009 | 1.018125e-53 | -8.615850e-47 |
| Msa0026130 | Msa0294160 | 0.840736 | 7.266111e-58 | -8.615850e-47 |
| Msa0026130 | Msa0300690 | 0.803250 | 3.813455e-49 | -8.615850e-47 |
| Msa0026130 | Msa0302160 | 0.808738 | 2.672952e-50 | -8.615850e-47 |
| Msa0026130 | Msa0307850 | 0.829711 | 4.418472e-55 | -8.615850e-47 |
| Msa0026130 | Msa0316810 | 0.843745 | 1.160124e-58 | -8.615850e-47 |
| Msa0026130 | Msa0318700 | 0.804940 | 1.696764e-49 | -8.615850e-47 |
| Msa0026130 | Msa0339490 | 0.810463 | 1.138665e-50 | -8.615850e-47 |
| Msa0026130 | Msa0339500 | 0.846483 | 2.111548e-59 | -8.615850e-47 |
| Msa0026130 | Msa0344570 | 0.810603 | 1.061775e-50 | -8.615850e-47 |
| Msa0026130 | Msa0369450 | 0.854080 | 1.561766e-61 | -8.615850e-47 |
| Msa0026130 | Msa0376310 | 0.801945 | 7.084930e-49 | -8.615850e-47 |
| Msa0026130 | Msa0380300 | 0.827511 | 1.502677e-54 | -8.615850e-47 |
| Msa0026130 | Msa0392420 | 0.802551 | 5.316884e-49 | -8.615850e-47 |
| Msa0026130 | Msa0392460 | 0.805024 | 1.629830e-49 | -8.615850e-47 |
| Msa0026130 | Msa0392490 | 0.820946 | 5.243607e-53 | -8.615850e-47 |
| Msa0026130 | Msa0395820 | 0.826729 | 2.312058e-54 | -8.615850e-47 |
| Msa0026130 | Msa0405710 | 0.840175 | 1.018674e-57 | -8.615850e-47 |
| Msa0026130 | Msa0410500 | 0.816560 | 5.192898e-52 | -8.615850e-47 |
| Msa0026130 | Msa0415870 | 0.804043 | 2.610721e-49 | -8.615850e-47 |
| Msa0026130 | Msa0422850 | 0.801294 | 9.634327e-49 | -8.615850e-47 |
| Msa0026130 | Msa0422930 | 0.800087 | 1.698487e-48 | -8.615850e-47 |
| Msa0026130 | Msa0468330 | 0.820586 | 6.343145e-53 | -8.615850e-47 |
| Msa0026130 | Msa0475790 | 0.848549 | 5.708738e-60 | -8.615850e-47 |
| Msa0026130 | Msa0484290 | 0.800105 | 1.684895e-48 | -8.615850e-47 |
| Msa0026130 | Msa0487570 | 0.803686 | 3.096792e-49 | -8.615850e-47 |
| Msa0026130 | Msa0487630 | 0.827188 | 1.795730e-54 | -8.615850e-47 |
| Msa0026130 | Msa0524500 | 0.861422 | 1.037465e-63 | -8.615850e-47 |
| Msa0026130 | Msa0526420 | 0.812581 | 3.945000e-51 | -8.615850e-47 |
| Msa0026130 | Msa0527550 | 0.813755 | 2.179343e-51 | -8.615850e-47 |
| Msa0026130 | Msa0535110 | 0.815448 | 9.197893e-52 | -8.615850e-47 |
| Msa0026130 | Msa0552810 | 0.833810 | 4.305717e-56 | -8.615850e-47 |
| Msa0026130 | Msa0556060 | 0.821416 | 4.084925e-53 | -8.615850e-47 |
| Msa0026130 | Msa0574890 | 0.810519 | 1.107114e-50 | -8.615850e-47 |
| Msa0026130 | Msa0581070 | 0.829158 | 6.019371e-55 | -8.615850e-47 |
| Msa0026130 | Msa0581110 | 0.809314 | 2.011690e-50 | -8.615850e-47 |
| Msa0026130 | Msa0588360 | 0.820454 | 6.799961e-53 | -8.615850e-47 |
| Msa0026130 | Msa0589510 | 0.808389 | 3.173009e-50 | -8.615850e-47 |
| Msa0026130 | Msa0597790 | 0.800392 | 1.472558e-48 | -8.615850e-47 |
| Msa0026130 | Msa0601530 | 0.803346 | 3.642568e-49 | -8.615850e-47 |
| Msa0026130 | Msa0615710 | 0.816719 | 4.784062e-52 | -8.615850e-47 |
| Msa0026130 | Msa0631170 | 0.804297 | 2.311070e-49 | -8.615850e-47 |
| Msa0026130 | Msa0638480 | 0.811809 | 5.813818e-51 | -8.615850e-47 |
| Msa0026130 | Msa0643300 | 0.807140 | 5.845027e-50 | -8.615850e-47 |
| Msa0026130 | Msa0643890 | 0.800612 | 1.327895e-48 | -8.615850e-47 |
| Msa0026130 | Msa0644800 | 0.818580 | 1.819629e-52 | -8.615850e-47 |
| Msa0026130 | Msa0669520 | 0.822628 | 2.139560e-53 | -8.615850e-47 |
| Msa0026130 | Msa0683570 | 0.824019 | 1.012539e-53 | -8.615850e-47 |
| Msa0026130 | Msa0683730 | 0.808172 | 3.528297e-50 | -8.615850e-47 |
| Msa0026130 | Msa0687630 | 0.814871 | 1.235726e-51 | -8.615850e-47 |
| Msa0026130 | Msa0689230 | 0.816835 | 4.506461e-52 | -8.615850e-47 |
| Msa0026130 | Msa0692840 | 0.839856 | 1.233310e-57 | -8.615850e-47 |
| Msa0026130 | Msa0713820 | 0.808265 | 3.371249e-50 | -8.615850e-47 |
| Msa0026130 | Msa0719510 | 0.826786 | 2.241141e-54 | -8.615850e-47 |
| Msa0026130 | Msa0738040 | 0.822428 | 2.381228e-53 | -8.615850e-47 |
| Msa0026130 | Msa0749220 | 0.806214 | 9.172122e-50 | -8.615850e-47 |
| Msa0026130 | Msa0749230 | 0.804016 | 2.644948e-49 | -8.615850e-47 |
| Msa0026130 | Msa0749760 | 0.816498 | 5.360661e-52 | -8.615850e-47 |
| Msa0026130 | Msa0752510 | 0.837248 | 5.812250e-57 | -8.615850e-47 |
| Msa0026130 | Msa0756060 | 0.800595 | 1.339037e-48 | -8.615850e-47 |
| Msa0026130 | Msa0763070 | 0.804548 | 2.048603e-49 | -8.615850e-47 |
| Msa0026130 | Msa0784200 | 0.824106 | 9.658986e-54 | -8.615850e-47 |
| Msa0026130 | Msa0785210 | 0.804520 | 2.076981e-49 | -8.615850e-47 |
| Msa0026130 | Msa0790400 | 0.807905 | 4.021518e-50 | -8.615850e-47 |
| Msa0026130 | Msa0797750 | 0.805185 | 1.508096e-49 | -8.615850e-47 |
| Msa0026130 | Msa0818310 | 0.844965 | 5.452345e-59 | -8.615850e-47 |
| Msa0026130 | Msa0821760 | 0.815154 | 1.069258e-51 | -8.615850e-47 |
| Msa0026130 | Msa0830880 | 0.839081 | 1.961192e-57 | -8.615850e-47 |
| Msa0026130 | Msa0858770 | 0.834217 | 3.406123e-56 | -8.615850e-47 |
| Msa0026130 | Msa0861510 | 0.807989 | 3.859583e-50 | -8.615850e-47 |
| Msa0026130 | Msa0861870 | 0.802560 | 5.295446e-49 | -8.615850e-47 |
| Msa0026130 | Msa0864010 | 0.802183 | 6.331996e-49 | -8.615850e-47 |
| Msa0026130 | Msa0869780 | 0.806673 | 7.336735e-50 | -8.615850e-47 |
| Msa0026130 | Msa0880780 | 0.824536 | 7.655604e-54 | -8.615850e-47 |
| Msa0026130 | Msa0896970 | 0.811031 | 8.581237e-51 | -8.615850e-47 |
| Msa0026130 | Msa0902760 | 0.824534 | 7.663295e-54 | -8.615850e-47 |
| Msa0026130 | Msa0930780 | 0.817178 | 3.772325e-52 | -8.615850e-47 |
| Msa0026130 | Msa0931460 | 0.831039 | 2.091965e-55 | -8.615850e-47 |
| Msa0026130 | Msa0936340 | 0.824851 | 6.453265e-54 | -8.615850e-47 |
| Msa0026130 | Msa0945110 | 0.834323 | 3.203599e-56 | -8.615850e-47 |
| Msa0026130 | Msa0961690 | 0.812136 | 4.933538e-51 | -8.615850e-47 |
| Msa0026130 | Msa0968590 | 0.817484 | 3.219578e-52 | -8.615850e-47 |
| Msa0026130 | Msa1005870 | 0.808140 | 3.584065e-50 | -8.615850e-47 |
| Msa0026130 | Msa1006840 | 0.808453 | 3.074701e-50 | -8.615850e-47 |
| Msa0026130 | Msa1012720 | 0.815128 | 1.083434e-51 | -8.615850e-47 |
| Msa0026130 | Msa1013400 | 0.823221 | 1.556932e-53 | -8.615850e-47 |
| Msa0026130 | Msa1019240 | 0.810829 | 9.486741e-51 | -8.615850e-47 |
| Msa0026130 | Msa1019260 | 0.830037 | 3.678531e-55 | -8.615850e-47 |
| Msa0026130 | Msa1040400 | 0.822926 | 1.823716e-53 | -8.615850e-47 |
| Msa0026130 | Msa1041530 | 0.805342 | 1.397928e-49 | -8.615850e-47 |
| Msa0026130 | Msa1055010 | 0.808716 | 2.701314e-50 | -8.615850e-47 |
| Msa0026130 | Msa1066490 | 0.816259 | 6.063661e-52 | -8.615850e-47 |
| Msa0026130 | Msa1074810 | 0.808545 | 2.938541e-50 | -8.615850e-47 |
| Msa0026130 | Msa1078170 | 0.836617 | 8.424777e-57 | -8.615850e-47 |
| Msa0026130 | Msa1079230 | 0.809088 | 2.249231e-50 | -8.615850e-47 |
| Msa0026130 | Msa1081150 | 0.818566 | 1.833712e-52 | -8.615850e-47 |
| Msa0026130 | Msa1081930 | 0.809950 | 1.468882e-50 | -8.615850e-47 |
| Msa0026130 | Msa1093530 | 0.824046 | 9.977108e-54 | -8.615850e-47 |
| Msa0026130 | Msa1093840 | 0.844057 | 9.567459e-59 | -8.615850e-47 |
| Msa0026130 | Msa1104140 | 0.814939 | 1.193548e-51 | -8.615850e-47 |
| Msa0026130 | Msa1104210 | 0.805947 | 1.043924e-49 | -8.615850e-47 |
| Msa0026130 | Msa1106700 | 0.820564 | 6.418196e-53 | -8.615850e-47 |
| Msa0026130 | Msa1115770 | 0.824373 | 8.359536e-54 | -8.615850e-47 |
| Msa0026130 | Msa1123380 | 0.802336 | 5.888161e-49 | -8.615850e-47 |
| Msa0026130 | Msa1124110 | 0.837551 | 4.862329e-57 | -8.615850e-47 |
| Msa0026130 | Msa1126510 | 0.859195 | 4.891056e-63 | -8.615850e-47 |
| Msa0026130 | Msa1126770 | 0.821610 | 3.684237e-53 | -8.615850e-47 |
| Msa0026130 | Msa1126830 | 0.805361 | 1.385752e-49 | -8.615850e-47 |
| Msa0026130 | Msa1127140 | 0.800864 | 1.179616e-48 | -8.615850e-47 |
| Msa0026130 | Msa1127890 | 0.805569 | 1.253252e-49 | -8.615850e-47 |
| Msa0026130 | Msa1128600 | 0.815214 | 1.036577e-51 | -8.615850e-47 |
| Msa0026130 | Msa1130980 | 0.800678 | 1.287538e-48 | -8.615850e-47 |
| Msa0026130 | Msa1134110 | 0.812835 | 3.471729e-51 | -8.615850e-47 |
| Msa0026130 | Msa1140210 | 0.801267 | 9.760379e-49 | -8.615850e-47 |
| Msa0026130 | Msa1157870 | 0.836525 | 8.893101e-57 | -8.615850e-47 |
| Msa0026130 | Msa1165870 | 0.818393 | 2.006541e-52 | -8.615850e-47 |
| Msa0026130 | Msa1165940 | 0.816276 | 6.009767e-52 | -8.615850e-47 |
| Msa0026130 | Msa1166400 | 0.800114 | 1.677608e-48 | -8.615850e-47 |
| Msa0026130 | Msa1166860 | 0.833150 | 6.289504e-56 | -8.615850e-47 |
| Msa0026130 | Msa1168950 | 0.812991 | 3.209199e-51 | -8.615850e-47 |
| Msa0026130 | Msa1169040 | 0.805032 | 1.623511e-49 | -8.615850e-47 |
| Msa0026130 | Msa1189070 | 0.817341 | 3.468040e-52 | -8.615850e-47 |
| Msa0026130 | Msa1196440 | 0.806704 | 7.228024e-50 | -8.615850e-47 |
| Msa0026130 | Msa1207270 | 0.810049 | 1.398185e-50 | -8.615850e-47 |
| Msa0026130 | Msa1218550 | 0.830764 | 2.444253e-55 | -8.615850e-47 |
| Msa0026130 | Msa1218600 | 0.821277 | 4.398471e-53 | -8.615850e-47 |
| Msa0026130 | Msa1221060 | 0.835658 | 1.476549e-56 | -8.615850e-47 |
| Msa0026130 | Msa1251160 | 0.876484 | 1.346596e-68 | -8.615850e-47 |
| Msa0026130 | Msa1252190 | 0.803774 | 2.968914e-49 | -8.615850e-47 |
| Msa0026130 | Msa1254610 | 0.801384 | 9.237355e-49 | -8.615850e-47 |
| Msa0026130 | Msa1257510 | 0.810882 | 9.241722e-51 | -8.615850e-47 |
| Msa0026130 | Msa1284550 | 0.809241 | 2.085155e-50 | -8.615850e-47 |
| Msa0026130 | Msa1292830 | 0.809164 | 2.166285e-50 | -8.615850e-47 |
| Msa0026130 | Msa1303240 | 0.830593 | 2.690959e-55 | -8.615850e-47 |
| Msa0026130 | Msa1303250 | 0.824732 | 6.880513e-54 | -8.615850e-47 |
| Msa0026130 | Msa1307950 | 0.824525 | 7.700572e-54 | -8.615850e-47 |
| Msa0026130 | Msa1314730 | 0.810454 | 1.143477e-50 | -8.615850e-47 |
| Msa0026130 | Msa1321630 | 0.804895 | 1.734339e-49 | -8.615850e-47 |
| Msa0026130 | Msa1343260 | 0.801432 | 9.030369e-49 | -8.615850e-47 |
| Msa0026130 | Msa1358220 | 0.802729 | 4.885274e-49 | -8.615850e-47 |
| Msa0026130 | Msa1361400 | 0.840168 | 1.022578e-57 | -8.615850e-47 |
| Msa0026130 | Msa1361410 | 0.833983 | 3.898520e-56 | -8.615850e-47 |
| Msa0026130 | Msa1363330 | 0.801710 | 7.918174e-49 | -8.615850e-47 |
| Msa0026130 | Msa1366800 | 0.828180 | 1.037362e-54 | -8.615850e-47 |
| Msa0026130 | Msa1367590 | 0.857741 | 1.327867e-62 | -8.615850e-47 |
| Msa0026130 | Msa1367880 | 0.815362 | 9.611757e-52 | -8.615850e-47 |
| Msa0026130 | Msa1369150 | 0.818941 | 1.507064e-52 | -8.615850e-47 |
| Msa0026130 | Msa1374550 | 0.830911 | 2.249304e-55 | -8.615850e-47 |
| Msa0026130 | Msa1376650 | 0.829789 | 4.229021e-55 | -8.615850e-47 |
| Msa0026130 | Msa1379760 | 0.824351 | 8.459546e-54 | -8.615850e-47 |
| Msa0026130 | Msa1386600 | 0.801328 | 9.482538e-49 | -8.615850e-47 |
| Msa0026130 | Msa1401860 | 0.822441 | 2.364555e-53 | -8.615850e-47 |
| Msa0026130 | Msa1418340 | 0.801739 | 7.809532e-49 | -8.615850e-47 |
| Msa0026130 | Msa1430240 | 0.800176 | 1.629360e-48 | -8.615850e-47 |
| Msa0026130 | Msa1436570 | 0.832323 | 1.009477e-55 | -8.615850e-47 |
| Msa0026130 | Msa1440880 | 0.820824 | 5.593558e-53 | -8.615850e-47 |
| Msa0026130 | Msa1443300 | 0.816967 | 4.207544e-52 | -8.615850e-47 |
| Msa0026130 | Msa1446810 | 0.850139 | 2.060342e-60 | -8.615850e-47 |
| Msa0026130 | Msa1446820 | 0.805174 | 1.515972e-49 | -8.615850e-47 |
| Msa0026130 | Msa1451160 | 0.835196 | 1.931469e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0026130 | MtrunA17_Chr1g0181131 | 99.087 | 219 | 2 | 0 | 1 | 219 | 1 | 219 | 3.09e-162 | 446 |
| Msa0026130 | MtrunA17_Chr7g0264181 | 93.981 | 216 | 13 | 0 | 4 | 219 | 5 | 220 | 5.07e-155 | 428 |
| Msa0026130 | MtrunA17_Chr2g0326841 | 85.507 | 207 | 30 | 0 | 1 | 207 | 1 | 207 | 2.15e-132 | 370 |
| Msa0026130 | MtrunA17_Chr4g0028871 | 89.637 | 193 | 20 | 0 | 12 | 204 | 12 | 204 | 4.79e-128 | 359 |
| Msa0026130 | MtrunA17_Chr3g0142491 | 76.190 | 210 | 50 | 0 | 10 | 219 | 12 | 221 | 2.09e-122 | 346 |
| Msa0026130 | MtrunA17_Chr1g0177391 | 71.770 | 209 | 57 | 1 | 10 | 218 | 6 | 212 | 8.21e-112 | 318 |
| Msa0026130 | MtrunA17_Chr1g0151201 | 67.157 | 204 | 65 | 1 | 11 | 212 | 7 | 210 | 7.92e-101 | 291 |
| Msa0026130 | MtrunA17_Chr1g0156401 | 64.286 | 112 | 19 | 1 | 40 | 130 | 1 | 112 | 9.98e-43 | 140 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0026130 | AT2G37210.1 | 85.581 | 215 | 29 | 2 | 1 | 214 | 1 | 214 | 7.32e-136 | 380 |
| Msa0026130 | AT3G53450.1 | 86.058 | 208 | 28 | 1 | 1 | 207 | 1 | 208 | 2.79e-133 | 373 |
| Msa0026130 | AT2G28305.1 | 89.394 | 198 | 21 | 0 | 10 | 207 | 5 | 202 | 1.02e-130 | 367 |
| Msa0026130 | AT2G37210.2 | 76.569 | 239 | 30 | 3 | 1 | 214 | 1 | 238 | 5.01e-130 | 366 |
| Msa0026130 | AT2G28305.3 | 90.503 | 179 | 17 | 0 | 10 | 188 | 5 | 183 | 2.55e-119 | 337 |
| Msa0026130 | AT5G06300.1 | 78.218 | 202 | 44 | 0 | 10 | 211 | 6 | 207 | 5.60e-118 | 335 |
| Msa0026130 | AT5G03270.1 | 82.796 | 186 | 32 | 0 | 10 | 195 | 16 | 201 | 3.54e-112 | 319 |
| Msa0026130 | AT5G03270.2 | 83.425 | 181 | 30 | 0 | 10 | 190 | 16 | 196 | 5.55e-109 | 311 |
| Msa0026130 | AT4G35190.1 | 71.429 | 203 | 58 | 0 | 6 | 208 | 2 | 204 | 1.62e-108 | 311 |
| Msa0026130 | AT2G35990.1 | 69.072 | 194 | 60 | 0 | 10 | 203 | 6 | 199 | 2.99e-105 | 302 |
| Msa0026130 | AT4G35190.2 | 73.057 | 193 | 50 | 1 | 6 | 198 | 2 | 192 | 8.42e-103 | 296 |
| Msa0026130 | AT5G11950.1 | 63.679 | 212 | 74 | 1 | 1 | 212 | 1 | 209 | 2.04e-100 | 290 |
| Msa0026130 | AT5G11950.2 | 63.679 | 212 | 74 | 1 | 1 | 212 | 1 | 209 | 2.04e-100 | 290 |
| Msa0026130 | AT5G11950.3 | 63.679 | 212 | 74 | 1 | 1 | 212 | 1 | 209 | 2.04e-100 | 290 |
| Msa0026130 | AT2G28305.2 | 91.667 | 132 | 11 | 0 | 10 | 141 | 5 | 136 | 1.80e-86 | 253 |
| Msa0026130 | AT2G35990.3 | 69.388 | 147 | 45 | 0 | 57 | 203 | 1 | 147 | 1.81e-76 | 228 |
| Msa0026130 | AT2G35990.2 | 69.388 | 147 | 45 | 0 | 57 | 203 | 1 | 147 | 1.81e-76 | 228 |
| Msa0026130 | AT5G11950.4 | 64.103 | 156 | 56 | 0 | 57 | 212 | 1 | 156 | 8.01e-73 | 218 |
| Msa0026130 | AT5G26140.2 | 51.656 | 151 | 51 | 1 | 84 | 212 | 6 | 156 | 1.16e-46 | 152 |
| Msa0026130 | AT5G26140.1 | 50.365 | 137 | 46 | 1 | 98 | 212 | 1 | 137 | 1.90e-39 | 133 |
| Msa0026130 | AT5G26140.3 | 53.774 | 106 | 49 | 0 | 107 | 212 | 17 | 122 | 3.69e-35 | 121 |
Find 68 sgRNAs with CRISPR-Local
Find 189 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAAATATTGATCTAGTTTA+TGG | 0.173128 | 1_1:-49778152 | Msa0026130:CDS |
| TTTAGAAATAGATTACTTAA+AGG | 0.231492 | 1_1:+49775535 | None:intergenic |
| AAATTACATGCAGGTGGTTA+TGG | 0.290968 | 1_1:-49776307 | Msa0026130:intron |
| TTAGAAATAGATTACTTAAA+GGG | 0.298161 | 1_1:+49775536 | None:intergenic |
| CCTAGTACTTACAACTTAGA+AGG | 0.333083 | 1_1:+49775598 | None:intergenic |
| CCTTCTAAGTTGTAAGTACT+AGG | 0.339347 | 1_1:-49775598 | Msa0026130:three_prime_UTR |
| CAAGATGCTGCCATTGAACT+TGG | 0.349737 | 1_1:-49778619 | Msa0026130:CDS |
| ACAATTATGTGGCGCGCATT+TGG | 0.351381 | 1_1:+49776040 | None:intergenic |
| TTACAAATGAAATTTCTTCC+AGG | 0.361641 | 1_1:+49775686 | None:intergenic |
| CTTGAGATGTCATACTCTTC+AGG | 0.376180 | 1_1:+49775814 | None:intergenic |
| AGGAGGAAGCATTGGTCTAA+TGG | 0.380070 | 1_1:-49778129 | Msa0026130:CDS |
| AAATTTCATTTGTAAAGTAC+TGG | 0.382613 | 1_1:-49775678 | Msa0026130:three_prime_UTR |
| AAAAGAGTTAGTGAAGAAAC+TGG | 0.405307 | 1_1:-49776002 | Msa0026130:CDS |
| CATTGAACTTGGAAATGAAT+TGG | 0.407304 | 1_1:-49778608 | Msa0026130:intron |
| AATTACATGCAGGTGGTTAT+GGG | 0.415602 | 1_1:-49776306 | Msa0026130:intron |
| GATGGTGGAAGACATGTCAT+AGG | 0.434367 | 1_1:-49778083 | Msa0026130:CDS |
| CTCTCTAGGCATGAGTGTCT+TGG | 0.437074 | 1_1:+49777919 | None:intergenic |
| AAGCATTGGTCTAATGGGTT+CGG | 0.439439 | 1_1:-49778123 | Msa0026130:CDS |
| GTCATAACCTGGGCTCAACT+TGG | 0.447889 | 1_1:-49776262 | Msa0026130:CDS |
| GGAGGAAGCATTGGTCTAAT+GGG | 0.451429 | 1_1:-49778128 | Msa0026130:CDS |
| TCTCTAGGCATGAGTGTCTT+GGG | 0.451553 | 1_1:+49777920 | None:intergenic |
| CAATTCATTTCCAAGTTCAA+TGG | 0.462751 | 1_1:+49778609 | None:intergenic |
| TTGCAAGAAACAAATACAAA+TGG | 0.467273 | 1_1:-49778725 | Msa0026130:exon |
| CTTCTAAGTTGTAAGTACTA+GGG | 0.474591 | 1_1:-49775597 | Msa0026130:three_prime_UTR |
| GTGGGACTAGTAAATGTTGA+TGG | 0.489170 | 1_1:-49776121 | Msa0026130:CDS |
| TAGAAATAGATTACTTAAAG+GGG | 0.491976 | 1_1:+49775537 | None:intergenic |
| ATTGATCTAGTTTATGGAGG+AGG | 0.513882 | 1_1:-49778146 | Msa0026130:CDS |
| CAAATACAAATGGAGACAAA+TGG | 0.514050 | 1_1:-49778715 | Msa0026130:exon |
| TAGCTCAGGCTAACCTGGTA+AGG | 0.520557 | 1_1:+49777379 | None:intergenic |
| TGACTTCAAGAAGCTCCTCT+AGG | 0.523303 | 1_1:+49776281 | None:intergenic |
| ACTTGGGATTCATGACAAAC+CGG | 0.526362 | 1_1:-49776245 | Msa0026130:intron |
| CATCGACAAAGCTGTGGAAG+AGG | 0.532010 | 1_1:-49776074 | Msa0026130:CDS |
| AGCTTCTTGAAGTCATAACC+TGG | 0.532925 | 1_1:-49776273 | Msa0026130:CDS |
| GTTTATGGAGGAGGAAGCAT+TGG | 0.534440 | 1_1:-49778137 | Msa0026130:CDS |
| GCGTTGCTTCGAAGTTGAGC+TGG | 0.538596 | 1_1:-49775861 | Msa0026130:CDS |
| GTTTCACAAGCTGTTCATGA+TGG | 0.539577 | 1_1:-49778101 | Msa0026130:CDS |
| TTTGCAGCTAACTGGTGAAA+CGG | 0.542234 | 1_1:-49777477 | Msa0026130:intron |
| GAAGCAACGCCTTCGTGACA+AGG | 0.544836 | 1_1:+49775874 | None:intergenic |
| CTGTAGCAGATATGCATCAA+AGG | 0.549564 | 1_1:-49777439 | Msa0026130:CDS |
| AATTTCATTTGTAAAGTACT+GGG | 0.549840 | 1_1:-49775677 | Msa0026130:three_prime_UTR |
| GACTTCAAGAAGCTCCTCTA+GGG | 0.553887 | 1_1:+49776282 | None:intergenic |
| TCATAACCTGGGCTCAACTT+GGG | 0.556522 | 1_1:-49776261 | Msa0026130:CDS |
| CTGAAGAGTATGACATCTCA+AGG | 0.559781 | 1_1:-49775813 | Msa0026130:CDS |
| TAAGAGTGTCAAAGTTCAAG+AGG | 0.560240 | 1_1:-49778687 | Msa0026130:CDS |
| GCATCAAAGGAAGGCAGAGA+TGG | 0.563589 | 1_1:-49777426 | Msa0026130:CDS |
| TTCGAAGTTGAGCTGGCAGA+TGG | 0.564883 | 1_1:-49775854 | Msa0026130:CDS |
| TTCTAAGTTGTAAGTACTAG+GGG | 0.569146 | 1_1:-49775596 | Msa0026130:three_prime_UTR |
| GAGGTGGAAAGAAGCTATTG+TGG | 0.570153 | 1_1:-49775733 | Msa0026130:three_prime_UTR |
| TTCATTCATCGACAAAGCTG+TGG | 0.574795 | 1_1:-49776080 | Msa0026130:CDS |
| CTAGTACTTACAACTTAGAA+GGG | 0.576646 | 1_1:+49775599 | None:intergenic |
| AATATTGATCTAGTTTATGG+AGG | 0.578824 | 1_1:-49778149 | Msa0026130:CDS |
| TCACAAGCTGTTCATGATGG+TGG | 0.582768 | 1_1:-49778098 | Msa0026130:CDS |
| ATGAATCCCAAGTTGAGCCC+AGG | 0.585691 | 1_1:+49776255 | None:intergenic |
| ATCGACAAAGCTGTGGAAGA+GGG | 0.594245 | 1_1:-49776073 | Msa0026130:CDS |
| GATGTCATACTCTTCAGGAT+AGG | 0.595686 | 1_1:+49775819 | None:intergenic |
| TTTAGTTTACTTGATGTGCA+AGG | 0.599214 | 1_1:-49775780 | Msa0026130:three_prime_UTR |
| CAGCTAACTGGTGAAACGGT+GGG | 0.599390 | 1_1:-49777473 | Msa0026130:CDS |
| ATGGTGGAAGACATGTCATA+GGG | 0.603354 | 1_1:-49778082 | Msa0026130:intron |
| GCAGCTAACTGGTGAAACGG+TGG | 0.613685 | 1_1:-49777474 | Msa0026130:intron |
| CAAGACACTCATGCCTAGAG+AGG | 0.614658 | 1_1:-49777918 | Msa0026130:intron |
| AAGAGTGTCAAAGTTCAAGA+GGG | 0.616352 | 1_1:-49778686 | Msa0026130:CDS |
| AGCAGATATGCATCAAAGGA+AGG | 0.629113 | 1_1:-49777435 | Msa0026130:CDS |
| GCTTCTTGAAGTCATAACCT+GGG | 0.658696 | 1_1:-49776272 | Msa0026130:CDS |
| GATTATGTTCCTTGTCACGA+AGG | 0.661791 | 1_1:-49775883 | Msa0026130:CDS |
| TAGGTGCTGATACAATTATG+TGG | 0.681813 | 1_1:+49776029 | None:intergenic |
| TCTAAGTTGTAAGTACTAGG+GGG | 0.696829 | 1_1:-49775595 | Msa0026130:three_prime_UTR |
| AGAGTTAGTGAAGAAACTGG+AGG | 0.710150 | 1_1:-49775999 | Msa0026130:intron |
| AGGTGGTTATGGGACCCTAG+AGG | 0.728214 | 1_1:-49776296 | Msa0026130:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATCTTATTTATTTTTTG+TGG | - | chr1_1:49775880-49775899 | Msa0026130:CDS | 10.0% |
| !! | AAATATATGAAAAAAACTTT+AGG | + | chr1_1:49776108-49776127 | None:intergenic | 10.0% |
| !! | TAAAAGTAATAATAAAGAAA+TGG | - | chr1_1:49776741-49776760 | Msa0026130:intron | 10.0% |
| !! | TGAATTAGTTAATAATATTT+AGG | + | chr1_1:49778213-49778232 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTCTCAAAAAAGA+AGG | + | chr1_1:49775864-49775883 | None:intergenic | 15.0% |
| !!! | ATTAAGTTTGAAATGAAAAA+TGG | + | chr1_1:49776183-49776202 | None:intergenic | 15.0% |
| !! | ATGAAAAAAGTGAATAATAA+AGG | + | chr1_1:49776593-49776612 | None:intergenic | 15.0% |
| !!! | TTGTTAAAGTTATTTTCTTT+TGG | - | chr1_1:49776693-49776712 | Msa0026130:intron | 15.0% |
| !!! | TGTTAAAGTTATTTTCTTTT+GGG | - | chr1_1:49776694-49776713 | Msa0026130:intron | 15.0% |
| !!! | TTTTAGTAATTAAGTTTGTT+AGG | + | chr1_1:49777182-49777201 | None:intergenic | 15.0% |
| !! | TAACAAACTTAATTACTAAA+AGG | - | chr1_1:49777181-49777200 | Msa0026130:intron | 15.0% |
| !! | ATGATTTAATTCTAACTTTA+AGG | - | chr1_1:49777328-49777347 | Msa0026130:intron | 15.0% |
| !! | TTAGAAATAGATTACTTAAA+GGG | + | chr1_1:49778870-49778889 | None:intergenic | 15.0% |
| !! | TTTAGAAATAGATTACTTAA+AGG | + | chr1_1:49778871-49778890 | None:intergenic | 15.0% |
| !!! | TCTTATTTATTTTTTGTGGA+TGG | - | chr1_1:49775884-49775903 | Msa0026130:CDS | 20.0% |
| !!! | CTTATTTATTTTTTGTGGAT+GGG | - | chr1_1:49775885-49775904 | Msa0026130:CDS | 20.0% |
| !!! | TTATTTATTTTTTGTGGATG+GGG | - | chr1_1:49775886-49775905 | Msa0026130:CDS | 20.0% |
| !! | ACAAACCATTAAAATTGATT+GGG | + | chr1_1:49776221-49776240 | None:intergenic | 20.0% |
| !!! | AGAAATATTGATCTAGTTTA+TGG | - | chr1_1:49776251-49776270 | Msa0026130:CDS | 20.0% |
| !! | TCATAAAAATGAAAACTTTG+AGG | + | chr1_1:49776360-49776379 | None:intergenic | 20.0% |
| !! | TTAACTTAAAATACAGAACA+AGG | + | chr1_1:49776648-49776667 | None:intergenic | 20.0% |
| !!! | AATTTTAGCCAAATATGTTA+GGG | + | chr1_1:49777475-49777494 | None:intergenic | 20.0% |
| !!! | AAATTTTAGCCAAATATGTT+AGG | + | chr1_1:49777476-49777495 | None:intergenic | 20.0% |
| !!! | TTTTCAAAGACTTTTATTTC+TGG | - | chr1_1:49777693-49777712 | Msa0026130:intron | 20.0% |
| !! | GAATTTAATGCAAAAAACAT+AGG | + | chr1_1:49778061-49778080 | None:intergenic | 20.0% |
| !! | AAATTTCATTTGTAAAGTAC+TGG | - | chr1_1:49778725-49778744 | Msa0026130:exon | 20.0% |
| !!! | AATTTCATTTGTAAAGTACT+GGG | - | chr1_1:49778726-49778745 | Msa0026130:exon | 20.0% |
| !!! | AGTAATTTCACATTTTTTTC+AGG | + | chr1_1:49778757-49778776 | None:intergenic | 20.0% |
| !! | TAGAAATAGATTACTTAAAG+GGG | + | chr1_1:49778869-49778888 | None:intergenic | 20.0% |
| ! | TTGCAAGAAACAAATACAAA+TGG | - | chr1_1:49775678-49775697 | Msa0026130:three_prime_UTR | 25.0% |
| ! | AAGGAAAAAAACAGTATGTA+AGG | + | chr1_1:49775845-49775864 | None:intergenic | 25.0% |
| ! | ATTCCTTTGTATATTTCAGT+TGG | - | chr1_1:49775952-49775971 | Msa0026130:intron | 25.0% |
| ! | TTCCTTTGTATATTTCAGTT+GGG | - | chr1_1:49775953-49775972 | Msa0026130:intron | 25.0% |
| !! | ATACTTTAAAAAGCTGAGAA+AGG | + | chr1_1:49776160-49776179 | None:intergenic | 25.0% |
| !! | CTTATCCCAATCAATTTTAA+TGG | - | chr1_1:49776213-49776232 | Msa0026130:intron | 25.0% |
| ! | CACAAACCATTAAAATTGAT+TGG | + | chr1_1:49776222-49776241 | None:intergenic | 25.0% |
| !!! | TCAATTTTAATGGTTTGTGA+AGG | - | chr1_1:49776223-49776242 | Msa0026130:intron | 25.0% |
| !! | AATATTGATCTAGTTTATGG+AGG | - | chr1_1:49776254-49776273 | Msa0026130:CDS | 25.0% |
| ! | AAAATACAGAACAAGGAAAT+AGG | + | chr1_1:49776641-49776660 | None:intergenic | 25.0% |
| !!! | AAAGTTATTTTCTTTTGGGT+AGG | - | chr1_1:49776698-49776717 | Msa0026130:intron | 25.0% |
| ! | TGGCAACAATATTAATGATT+AGG | + | chr1_1:49777216-49777235 | None:intergenic | 25.0% |
| ! | AATCATTAATATTGTTGCCA+AGG | - | chr1_1:49777216-49777235 | Msa0026130:intron | 25.0% |
| ! | AAAAAAAATGATCTGACCAT+TGG | - | chr1_1:49777929-49777948 | Msa0026130:CDS | 25.0% |
| !! | ATTTAGGTTCCTTAACAAAA+TGG | + | chr1_1:49778197-49778216 | None:intergenic | 25.0% |
| ! | AATGTCAAATCTAGTTAAAC+TGG | + | chr1_1:49778249-49778268 | None:intergenic | 25.0% |
| ! | TATTATGTTTGATTCATCAC+AGG | - | chr1_1:49778498-49778517 | Msa0026130:intron | 25.0% |
| ! | TTACAAATGAAATTTCTTCC+AGG | + | chr1_1:49778720-49778739 | None:intergenic | 25.0% |
| !! | GAAATCAGTTTTCAAAAGAA+GGG | + | chr1_1:49778785-49778804 | None:intergenic | 25.0% |
| CAAATACAAATGGAGACAAA+TGG | - | chr1_1:49775688-49775707 | Msa0026130:three_prime_UTR | 30.0% | |
| CAATTCATTTCCAAGTTCAA+TGG | + | chr1_1:49775797-49775816 | None:intergenic | 30.0% | |
| CATTGAACTTGGAAATGAAT+TGG | - | chr1_1:49775795-49775814 | Msa0026130:exon | 30.0% | |
| TCAAGCACAATAGACTATTA+TGG | + | chr1_1:49776392-49776411 | None:intergenic | 30.0% | |
| !!! | ACTCTTTTGTTTTACTTCAG+TGG | - | chr1_1:49776772-49776791 | Msa0026130:intron | 30.0% |
| AAGAATAGTACACCTTACTT+TGG | - | chr1_1:49777047-49777066 | Msa0026130:intron | 30.0% | |
| AAGCATTAAAGACTGAGATA+TGG | + | chr1_1:49777149-49777168 | None:intergenic | 30.0% | |
| ACAATATTAATGATTAGGCG+TGG | + | chr1_1:49777211-49777230 | None:intergenic | 30.0% | |
| ACAGTGTATCAAAATTACCT+TGG | + | chr1_1:49777236-49777255 | None:intergenic | 30.0% | |
| TCTCTAATCATCATAGCATT+AGG | + | chr1_1:49777412-49777431 | None:intergenic | 30.0% | |
| AGGAAAGTAGATGCAAAAAA+TGG | + | chr1_1:49777544-49777563 | None:intergenic | 30.0% | |
| !!! | TTTTTTGCATCTACTTTCCT+TGG | - | chr1_1:49777544-49777563 | Msa0026130:intron | 30.0% |
| ! | TTTTGTACCAAACTTACTCA+TGG | - | chr1_1:49777578-49777597 | Msa0026130:intron | 30.0% |
| ATCAAAACCATGAGTAAGTT+TGG | + | chr1_1:49777588-49777607 | None:intergenic | 30.0% | |
| !!! | CTCATGGTTTTGATATAGAA+AGG | - | chr1_1:49777594-49777613 | Msa0026130:intron | 30.0% |
| AAATTAGTGACTGTTACAGA+AGG | - | chr1_1:49777742-49777761 | Msa0026130:intron | 30.0% | |
| GTGCATTATGTAATCAATCT+CGG | - | chr1_1:49777861-49777880 | Msa0026130:intron | 30.0% | |
| GTTGTTCGATTTCAAATCAA+TGG | + | chr1_1:49777887-49777906 | None:intergenic | 30.0% | |
| TGTGTGCCATAATTATTGTA+GGG | - | chr1_1:49777980-49777999 | Msa0026130:intron | 30.0% | |
| CAGATTCCCTACAATAATTA+TGG | + | chr1_1:49777989-49778008 | None:intergenic | 30.0% | |
| TTATTGTAGGGAATCTGTTT+CGG | - | chr1_1:49777992-49778011 | Msa0026130:intron | 30.0% | |
| CTTAAGGTCATCTAATAAAC+TGG | + | chr1_1:49778026-49778045 | None:intergenic | 30.0% | |
| AACTTATGCAAATTACATGC+AGG | - | chr1_1:49778087-49778106 | Msa0026130:CDS | 30.0% | |
| AAATGGTACAAGTCAATTAC+CGG | + | chr1_1:49778180-49778199 | None:intergenic | 30.0% | |
| !! | TGACTTGTACCATTTTGTTA+AGG | - | chr1_1:49778185-49778204 | Msa0026130:intron | 30.0% |
| ! | TTCACTAACTCTTTTGATGT+AGG | + | chr1_1:49778396-49778415 | None:intergenic | 30.0% |
| AAAAGAGTTAGTGAAGAAAC+TGG | - | chr1_1:49778401-49778420 | Msa0026130:intron | 30.0% | |
| ! | TTTAGTTTACTTGATGTGCA+AGG | - | chr1_1:49778623-49778642 | Msa0026130:CDS | 30.0% |
| ! | GAGACTAGATAGAATTTTAG+AGG | - | chr1_1:49778651-49778670 | Msa0026130:CDS | 30.0% |
| !! | ACTAGATAGAATTTTAGAGG+TGG | - | chr1_1:49778654-49778673 | Msa0026130:CDS | 30.0% |
| CAGGAAAGAAAAACAGAATA+GGG | + | chr1_1:49778701-49778720 | None:intergenic | 30.0% | |
| ! | GGAAATCAGTTTTCAAAAGA+AGG | + | chr1_1:49778786-49778805 | None:intergenic | 30.0% |
| CTAGTACTTACAACTTAGAA+GGG | + | chr1_1:49778807-49778826 | None:intergenic | 30.0% | |
| CTTCTAAGTTGTAAGTACTA+GGG | - | chr1_1:49778806-49778825 | Msa0026130:five_prime_UTR | 30.0% | |
| TTCTAAGTTGTAAGTACTAG+GGG | - | chr1_1:49778807-49778826 | Msa0026130:five_prime_UTR | 30.0% | |
| !! | TAAGAGTGTCAAAGTTCAAG+AGG | - | chr1_1:49775716-49775735 | Msa0026130:three_prime_UTR | 35.0% |
| !! | AAGAGTGTCAAAGTTCAAGA+GGG | - | chr1_1:49775717-49775736 | Msa0026130:three_prime_UTR | 35.0% |
| !!! | AAGAGGGTTTGTGTTTTTTG+TGG | - | chr1_1:49775733-49775752 | Msa0026130:three_prime_UTR | 35.0% |
| !! | TGATAACTACTTTTCTTGCC+AGG | + | chr1_1:49775766-49775785 | None:intergenic | 35.0% |
| GACCCAACTGAAATATACAA+AGG | + | chr1_1:49775958-49775977 | None:intergenic | 35.0% | |
| ! | ATTGATCTAGTTTATGGAGG+AGG | - | chr1_1:49776257-49776276 | Msa0026130:CDS | 35.0% |
| GACAAATAAACCAGTGTCAA+TGG | + | chr1_1:49776437-49776456 | None:intergenic | 35.0% | |
| CTGTTCCATTTCTTATCCAT+TGG | - | chr1_1:49776897-49776916 | Msa0026130:intron | 35.0% | |
| AGGATCCAATGGATAAGAAA+TGG | + | chr1_1:49776905-49776924 | None:intergenic | 35.0% | |
| TCTGTAATGCAACCAAAGTA+AGG | + | chr1_1:49777062-49777081 | None:intergenic | 35.0% | |
| AAAGACTGAGATATGGTCAA+TGG | + | chr1_1:49777142-49777161 | None:intergenic | 35.0% | |
| ! | GCTTTGACTCTGAAAAACTA+TGG | - | chr1_1:49777502-49777521 | Msa0026130:intron | 35.0% |
| TCTGAAAAACTATGGTTCTC+TGG | - | chr1_1:49777510-49777529 | Msa0026130:intron | 35.0% | |
| ACAAAAACGTCATGATTCCA+AGG | + | chr1_1:49777564-49777583 | None:intergenic | 35.0% | |
| CACTATTTCATGACATGTAC+AGG | + | chr1_1:49777669-49777688 | None:intergenic | 35.0% | |
| ACTTGTCATTCACTCTTTCT+TGG | - | chr1_1:49777784-49777803 | Msa0026130:intron | 35.0% | |
| CTTGTCATTCACTCTTTCTT+GGG | - | chr1_1:49777785-49777804 | Msa0026130:intron | 35.0% | |
| CTGTGTGCCATAATTATTGT+AGG | - | chr1_1:49777979-49777998 | Msa0026130:intron | 35.0% | |
| TGCAAAAAACATAGGAGAAC+AGG | + | chr1_1:49778053-49778072 | None:intergenic | 35.0% | |
| TTATGCAAATTACATGCAGG+TGG | - | chr1_1:49778090-49778109 | Msa0026130:CDS | 35.0% | |
| AAATTACATGCAGGTGGTTA+TGG | - | chr1_1:49778096-49778115 | Msa0026130:CDS | 35.0% | |
| AATTACATGCAGGTGGTTAT+GGG | - | chr1_1:49778097-49778116 | Msa0026130:CDS | 35.0% | |
| !! | TAGGTGCTGATACAATTATG+TGG | + | chr1_1:49778377-49778396 | None:intergenic | 35.0% |
| CCAGGAAAGAAAAACAGAAT+AGG | + | chr1_1:49778702-49778721 | None:intergenic | 35.0% | |
| !! | CCTATTCTGTTTTTCTTTCC+TGG | - | chr1_1:49778699-49778718 | Msa0026130:CDS | 35.0% |
| CCTAGTACTTACAACTTAGA+AGG | + | chr1_1:49778808-49778827 | None:intergenic | 35.0% | |
| CCTTCTAAGTTGTAAGTACT+AGG | - | chr1_1:49778805-49778824 | Msa0026130:five_prime_UTR | 35.0% | |
| TCTAAGTTGTAAGTACTAGG+GGG | - | chr1_1:49778808-49778827 | Msa0026130:five_prime_UTR | 35.0% | |
| !!! | GTTTTTTGTGGAAGTAGTCC+TGG | - | chr1_1:49775745-49775764 | Msa0026130:three_prime_UTR | 40.0% |
| ! | TTTTGTGGATGGGGTGAAAA+TGG | - | chr1_1:49775895-49775914 | Msa0026130:intron | 40.0% |
| !! | AAGCATTGGTCTAATGGGTT+CGG | - | chr1_1:49776280-49776299 | Msa0026130:CDS | 40.0% |
| GTTTCACAAGCTGTTCATGA+TGG | - | chr1_1:49776302-49776321 | Msa0026130:intron | 40.0% | |
| ! | ATGGTGGAAGACATGTCATA+GGG | - | chr1_1:49776321-49776340 | Msa0026130:intron | 40.0% |
| ATCTCTTTGTCCATTGACAC+TGG | - | chr1_1:49776424-49776443 | Msa0026130:intron | 40.0% | |
| ! | CTTTTCTCACATACCTCTCT+AGG | + | chr1_1:49776501-49776520 | None:intergenic | 40.0% |
| TTCAGTGGCTTATAATGTGC+TGG | - | chr1_1:49776787-49776806 | Msa0026130:intron | 40.0% | |
| TAGCTGCAAAAAGGATCCAA+TGG | + | chr1_1:49776916-49776935 | None:intergenic | 40.0% | |
| TTCACCAGTTAGCTGCAAAA+AGG | + | chr1_1:49776925-49776944 | None:intergenic | 40.0% | |
| TTTGCAGCTAACTGGTGAAA+CGG | - | chr1_1:49776926-49776945 | Msa0026130:intron | 40.0% | |
| CTGTAGCAGATATGCATCAA+AGG | - | chr1_1:49776964-49776983 | Msa0026130:intron | 40.0% | |
| AGCAGATATGCATCAAAGGA+AGG | - | chr1_1:49776968-49776987 | Msa0026130:intron | 40.0% | |
| ! | GATGCTTTTATTGCCTTACC+AGG | - | chr1_1:49777011-49777030 | Msa0026130:intron | 40.0% |
| ! | GGTGTACTATTCTTTAGCTC+AGG | + | chr1_1:49777041-49777060 | None:intergenic | 40.0% |
| AGAGAGTGACTCTTCAAAAC+TGG | - | chr1_1:49777427-49777446 | Msa0026130:CDS | 40.0% | |
| GGTGATAAGGGGTCTTAATT+TGG | - | chr1_1:49777839-49777858 | Msa0026130:intron | 40.0% | |
| !! | TGACCATTGGTTTAGATCGA+AGG | - | chr1_1:49777942-49777961 | Msa0026130:intron | 40.0% |
| !! | GACCATTGGTTTAGATCGAA+GGG | - | chr1_1:49777943-49777962 | Msa0026130:intron | 40.0% |
| TAGGAGAACAGGAACACTTA+AGG | + | chr1_1:49778042-49778061 | None:intergenic | 40.0% | |
| AGCTTCTTGAAGTCATAACC+TGG | - | chr1_1:49778130-49778149 | Msa0026130:CDS | 40.0% | |
| GCTTCTTGAAGTCATAACCT+GGG | - | chr1_1:49778131-49778150 | Msa0026130:CDS | 40.0% | |
| ACTTGGGATTCATGACAAAC+CGG | - | chr1_1:49778158-49778177 | Msa0026130:CDS | 40.0% | |
| ! | GTGGGACTAGTAAATGTTGA+TGG | - | chr1_1:49778282-49778301 | Msa0026130:intron | 40.0% |
| TTCATTCATCGACAAAGCTG+TGG | - | chr1_1:49778323-49778342 | Msa0026130:intron | 40.0% | |
| AGAGTTAGTGAAGAAACTGG+AGG | - | chr1_1:49778404-49778423 | Msa0026130:intron | 40.0% | |
| GATTATGTTCCTTGTCACGA+AGG | - | chr1_1:49778520-49778539 | Msa0026130:intron | 40.0% | |
| GATGTCATACTCTTCAGGAT+AGG | + | chr1_1:49778587-49778606 | None:intergenic | 40.0% | |
| CTTGAGATGTCATACTCTTC+AGG | + | chr1_1:49778592-49778611 | None:intergenic | 40.0% | |
| ! | CTGAAGAGTATGACATCTCA+AGG | - | chr1_1:49778590-49778609 | Msa0026130:intron | 40.0% |
| CAAGATGCTGCCATTGAACT+TGG | - | chr1_1:49775784-49775803 | Msa0026130:three_prime_UTR | 45.0% | |
| ! | GTTTATGGAGGAGGAAGCAT+TGG | - | chr1_1:49776266-49776285 | Msa0026130:CDS | 45.0% |
| !! | AGGAGGAAGCATTGGTCTAA+TGG | - | chr1_1:49776274-49776293 | Msa0026130:CDS | 45.0% |
| !! | GGAGGAAGCATTGGTCTAAT+GGG | - | chr1_1:49776275-49776294 | Msa0026130:CDS | 45.0% |
| TCACAAGCTGTTCATGATGG+TGG | - | chr1_1:49776305-49776324 | Msa0026130:intron | 45.0% | |
| !! | GATGGTGGAAGACATGTCAT+AGG | - | chr1_1:49776320-49776339 | Msa0026130:intron | 45.0% |
| TCTCTAGGCATGAGTGTCTT+GGG | + | chr1_1:49776486-49776505 | None:intergenic | 45.0% | |
| ! | GGATCCTTTTTGCAGCTAAC+TGG | - | chr1_1:49776918-49776937 | Msa0026130:intron | 45.0% |
| ! | TTCTTTAGCTCAGGCTAACC+TGG | + | chr1_1:49777032-49777051 | None:intergenic | 45.0% |
| GCCTGAGACCCTAACATATT+TGG | - | chr1_1:49777464-49777483 | Msa0026130:CDS | 45.0% | |
| GCCAAATATGTTAGGGTCTC+AGG | + | chr1_1:49777468-49777487 | None:intergenic | 45.0% | |
| AGTGACTGTTACAGAAGGCA+AGG | - | chr1_1:49777747-49777766 | Msa0026130:intron | 45.0% | |
| CTCTTCCCTCTATCTTGCAA+GGG | + | chr1_1:49777813-49777832 | None:intergenic | 45.0% | |
| TCTCTTCCCTCTATCTTGCA+AGG | + | chr1_1:49777814-49777833 | None:intergenic | 45.0% | |
| AAGATAGAGGGAAGAGAGAG+AGG | - | chr1_1:49777817-49777836 | Msa0026130:intron | 45.0% | |
| AGATAGAGGGAAGAGAGAGA+GGG | - | chr1_1:49777818-49777837 | Msa0026130:intron | 45.0% | |
| GAAGAGAGAGAGGGTGATAA+GGG | - | chr1_1:49777827-49777846 | Msa0026130:intron | 45.0% | |
| AAGAGAGAGAGGGTGATAAG+GGG | - | chr1_1:49777828-49777847 | Msa0026130:intron | 45.0% | |
| GACCCTTCGATCTAAACCAA+TGG | + | chr1_1:49777948-49777967 | None:intergenic | 45.0% | |
| GACTTCAAGAAGCTCCTCTA+GGG | + | chr1_1:49778124-49778143 | None:intergenic | 45.0% | |
| TGACTTCAAGAAGCTCCTCT+AGG | + | chr1_1:49778125-49778144 | None:intergenic | 45.0% | |
| TCATAACCTGGGCTCAACTT+GGG | - | chr1_1:49778142-49778161 | Msa0026130:CDS | 45.0% | |
| TTTGACATTCCACAACTCGC+AGG | - | chr1_1:49778260-49778279 | Msa0026130:intron | 45.0% | |
| ATCGACAAAGCTGTGGAAGA+GGG | - | chr1_1:49778330-49778349 | Msa0026130:intron | 45.0% | |
| ACAATTATGTGGCGCGCATT+TGG | + | chr1_1:49778366-49778385 | None:intergenic | 45.0% | |
| GAGGTGGAAAGAAGCTATTG+TGG | - | chr1_1:49778670-49778689 | Msa0026130:CDS | 45.0% | |
| !!! | AATATAAATTTTTTGTTTTT+TGG | - | chr1_1:49776045-49776064 | Msa0026130:CDS | 5.0% |
| !!! | TTTTTTTTTTTTTATATCTA+TGG | - | chr1_1:49776127-49776146 | Msa0026130:intron | 5.0% |
| CTCTCTAGGCATGAGTGTCT+TGG | + | chr1_1:49776487-49776506 | None:intergenic | 50.0% | |
| CAAGACACTCATGCCTAGAG+AGG | - | chr1_1:49776485-49776504 | Msa0026130:intron | 50.0% | |
| CAGCTAACTGGTGAAACGGT+GGG | - | chr1_1:49776930-49776949 | Msa0026130:intron | 50.0% | |
| GCATCAAAGGAAGGCAGAGA+TGG | - | chr1_1:49776977-49776996 | Msa0026130:intron | 50.0% | |
| TAGCTCAGGCTAACCTGGTA+AGG | + | chr1_1:49777027-49777046 | None:intergenic | 50.0% | |
| TTAGGGTCTCAGGCAAAGTC+AGG | + | chr1_1:49777458-49777477 | None:intergenic | 50.0% | |
| TGGGATCCCTTGCAAGATAG+AGG | - | chr1_1:49777804-49777823 | Msa0026130:intron | 50.0% | |
| GGGATCCCTTGCAAGATAGA+GGG | - | chr1_1:49777805-49777824 | Msa0026130:intron | 50.0% | |
| GGAAGAGAGAGAGGGTGATA+AGG | - | chr1_1:49777826-49777845 | Msa0026130:intron | 50.0% | |
| GTCATAACCTGGGCTCAACT+TGG | - | chr1_1:49778141-49778160 | Msa0026130:CDS | 50.0% | |
| ! | ATGAATCCCAAGTTGAGCCC+AGG | + | chr1_1:49778151-49778170 | None:intergenic | 50.0% |
| ACATTCCACAACTCGCAGGT+GGG | - | chr1_1:49778264-49778283 | Msa0026130:intron | 50.0% | |
| CATCGACAAAGCTGTGGAAG+AGG | - | chr1_1:49778329-49778348 | Msa0026130:intron | 50.0% | |
| TTCGAAGTTGAGCTGGCAGA+TGG | - | chr1_1:49778549-49778568 | Msa0026130:intron | 50.0% | |
| GCAGCTAACTGGTGAAACGG+TGG | - | chr1_1:49776929-49776948 | Msa0026130:intron | 55.0% | |
| AGGTGGTTATGGGACCCTAG+AGG | - | chr1_1:49778107-49778126 | Msa0026130:CDS | 55.0% | |
| GACATTCCACAACTCGCAGG+TGG | - | chr1_1:49778263-49778282 | Msa0026130:intron | 55.0% | |
| GAAGCAACGCCTTCGTGACA+AGG | + | chr1_1:49778532-49778551 | None:intergenic | 55.0% | |
| GCGTTGCTTCGAAGTTGAGC+TGG | - | chr1_1:49778542-49778561 | Msa0026130:intron | 55.0% | |
| CTAGTCCCACCTGCGAGTTG+TGG | + | chr1_1:49778272-49778291 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 49775531 | 49778894 | 49775531 | ID=Msa0026130;Name=Msa0026130 |
| chr1_1 | mRNA | 49775531 | 49778894 | 49775531 | ID=Msa0026130-mRNA-1;Parent=Msa0026130;Name=Msa0026130-mRNA-1;_AED=0.10;_eAED=0.10;_QI=166|1|1|1|1|1|7|279|219 |
| chr1_1 | exon | 49775531 | 49775905 | 49775531 | ID=Msa0026130-mRNA-1:exon:14376;Parent=Msa0026130-mRNA-1 |
| chr1_1 | exon | 49776000 | 49776143 | 49776000 | ID=Msa0026130-mRNA-1:exon:14375;Parent=Msa0026130-mRNA-1 |
| chr1_1 | exon | 49776246 | 49776316 | 49776246 | ID=Msa0026130-mRNA-1:exon:14374;Parent=Msa0026130-mRNA-1 |
| chr1_1 | exon | 49777393 | 49777492 | 49777393 | ID=Msa0026130-mRNA-1:exon:14373;Parent=Msa0026130-mRNA-1 |
| chr1_1 | exon | 49777919 | 49777949 | 49777919 | ID=Msa0026130-mRNA-1:exon:14372;Parent=Msa0026130-mRNA-1 |
| chr1_1 | exon | 49778083 | 49778180 | 49778083 | ID=Msa0026130-mRNA-1:exon:14371;Parent=Msa0026130-mRNA-1 |
| chr1_1 | exon | 49778609 | 49778894 | 49778609 | ID=Msa0026130-mRNA-1:exon:14370;Parent=Msa0026130-mRNA-1 |
| chr1_1 | five_prime_UTR | 49778729 | 49778894 | 49778729 | ID=Msa0026130-mRNA-1:five_prime_utr;Parent=Msa0026130-mRNA-1 |
| chr1_1 | CDS | 49778609 | 49778728 | 49778609 | ID=Msa0026130-mRNA-1:cds;Parent=Msa0026130-mRNA-1 |
| chr1_1 | CDS | 49778083 | 49778180 | 49778083 | ID=Msa0026130-mRNA-1:cds;Parent=Msa0026130-mRNA-1 |
| chr1_1 | CDS | 49777919 | 49777949 | 49777919 | ID=Msa0026130-mRNA-1:cds;Parent=Msa0026130-mRNA-1 |
| chr1_1 | CDS | 49777393 | 49777492 | 49777393 | ID=Msa0026130-mRNA-1:cds;Parent=Msa0026130-mRNA-1 |
| chr1_1 | CDS | 49776246 | 49776316 | 49776246 | ID=Msa0026130-mRNA-1:cds;Parent=Msa0026130-mRNA-1 |
| chr1_1 | CDS | 49776000 | 49776143 | 49776000 | ID=Msa0026130-mRNA-1:cds;Parent=Msa0026130-mRNA-1 |
| chr1_1 | CDS | 49775810 | 49775905 | 49775810 | ID=Msa0026130-mRNA-1:cds;Parent=Msa0026130-mRNA-1 |
| chr1_1 | three_prime_UTR | 49775531 | 49775809 | 49775531 | ID=Msa0026130-mRNA-1:three_prime_utr;Parent=Msa0026130-mRNA-1 |
| Gene Sequence |
| Protein sequence |
