AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0091610

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0091610 MtrunA17_Chr1g0212521 99.535 215 1 0 1 215 1 215 1.17e-160 442
Msa0091610 MtrunA17_Chr1g0182321 91.163 215 19 0 1 215 1 215 1.01e-148 412
Msa0091610 MtrunA17_Chr1g0182301 90.698 215 20 0 1 215 1 215 5.29e-148 410
Msa0091610 MtrunA17_Chr4g0030911 93.659 205 12 1 11 215 11 214 2.86e-141 393
Msa0091610 MtrunA17_Chr7g0263071 94.146 205 12 0 11 215 11 215 1.32e-138 386
Msa0091610 MtrunA17_Chr2g0327911 75.814 215 46 4 4 215 2 213 1.12e-115 328
Msa0091610 MtrunA17_Chr7g0250531 60.194 206 73 3 10 214 3 200 9.51e-87 254
Msa0091610 MtrunA17_Chr4g0055651 58.537 205 76 3 11 214 4 200 2.27e-85 251
Msa0091610 MtrunA17_Chr8g0335471 59.223 206 74 3 11 214 4 201 6.04e-84 248
Msa0091610 MtrunA17_Chr2g0276931 54.146 205 88 2 11 215 5 203 1.35e-78 234
Msa0091610 MtrunA17_Chr6g0458081 48.325 209 101 4 12 214 3 210 1.65e-61 191
Msa0091610 MtrunA17_Chr2g0290891 46.890 209 104 3 12 214 3 210 1.24e-60 189
Msa0091610 MtrunA17_Chr4g0032201 45.370 216 104 5 7 214 4 213 4.25e-60 187
Msa0091610 MtrunA17_Chr3g0112681 44.811 212 104 4 11 214 8 214 2.29e-59 186
Msa0091610 MtrunA17_Chr2g0283131 44.907 216 106 3 7 214 5 215 2.42e-58 183
Msa0091610 MtrunA17_Chr4g0046261 43.056 216 110 3 7 214 5 215 3.84e-57 180
Msa0091610 MtrunA17_Chr4g0040781 43.519 216 109 3 7 214 5 215 1.78e-56 178
Msa0091610 MtrunA17_Chr2g0276941 44.498 209 110 4 11 214 11 218 3.39e-56 177
Msa0091610 MtrunA17_Chr2g0315551 43.721 215 116 2 4 214 2 215 4.43e-56 177
Msa0091610 MtrunA17_Chr7g0265001 46.154 208 100 5 12 214 13 213 2.28e-55 175
Msa0091610 MtrunA17_Chr8g0349711 44.286 210 105 4 14 214 5 211 2.44e-55 175
Msa0091610 MtrunA17_Chr1g0180291 48.293 205 99 6 12 214 11 210 3.43e-55 175
Msa0091610 MtrunA17_Chr1g0189361 43.519 216 103 4 13 214 12 222 5.03e-55 175
Msa0091610 MtrunA17_Chr3g0123821 42.105 209 113 3 13 214 14 221 2.84e-54 173
Msa0091610 MtrunA17_Chr2g0319951 49.425 174 87 1 4 177 2 174 1.15e-53 171
Msa0091610 MtrunA17_Chr3g0130271 45.411 207 104 6 11 214 8 208 2.10e-53 170
Msa0091610 MtrunA17_Chr8g0381841 48.485 165 84 1 13 177 15 178 3.14e-53 170
Msa0091610 MtrunA17_Chr1g0159481 45.933 209 100 7 11 214 13 213 3.75e-53 170
Msa0091610 MtrunA17_Chr1g0197331 43.779 217 113 6 1 214 1 211 4.40e-53 169
Msa0091610 MtrunA17_Chr8g0384311 43.128 211 112 5 6 214 4 208 1.13e-52 168
Msa0091610 MtrunA17_Chr7g0234201 41.667 204 115 2 14 214 12 214 1.21e-52 168
Msa0091610 MtrunA17_Chr8g0349681 47.429 175 91 1 9 183 378 551 6.80e-52 176
Msa0091610 MtrunA17_Chr8g0349681 44.681 188 97 3 12 195 172 356 1.38e-48 167
Msa0091610 MtrunA17_Chr8g0349681 49.045 157 79 1 14 170 12 167 6.67e-46 160
Msa0091610 MtrunA17_Chr2g0325091 42.308 208 114 3 11 214 7 212 3.70e-51 164
Msa0091610 MtrunA17_Chr7g0214241 40.097 207 117 3 14 214 14 219 5.63e-51 164
Msa0091610 MtrunA17_Chr8g0346421 46.667 165 87 1 13 177 24 187 1.52e-50 164
Msa0091610 MtrunA17_Chr8g0351861 41.395 215 111 3 13 214 14 226 2.61e-50 163
Msa0091610 MtrunA17_Chr1g0174281 39.815 216 112 3 13 215 13 223 4.38e-50 162
Msa0091610 MtrunA17_Chr6g0482721 41.429 210 110 4 13 214 10 214 2.07e-49 160
Msa0091610 MtrunA17_Chr7g0275991 42.775 173 98 1 7 179 12 183 9.96e-49 159
Msa0091610 MtrunA17_Chr7g0231131 45.455 165 89 1 13 177 13 176 3.26e-47 155
Msa0091610 MtrunA17_Chr8g0392931 41.546 207 115 3 13 214 12 217 2.88e-46 152
Msa0091610 MtrunA17_Chr8g0390561 39.698 199 109 4 17 215 11 198 5.27e-45 148
Msa0091610 MtrunA17_Chr1g0199331 44.242 165 90 2 16 179 32 195 5.61e-45 148
Msa0091610 MtrunA17_Chr3g0109721 38.384 198 112 4 17 214 12 199 3.30e-44 146
Msa0091610 MtrunA17_Chr5g0433561 38.889 198 111 4 17 214 12 199 1.55e-43 144
Msa0091610 MtrunA17_Chr8g0382221 37.879 198 119 3 17 213 11 205 6.30e-42 140
Msa0091610 MtrunA17_Chr5g0400131 36.967 211 125 4 4 213 2 205 2.99e-41 139
Msa0091610 MtrunA17_Chr4g0034871 39.706 204 103 7 5 192 2 201 2.26e-40 137
Msa0091610 MtrunA17_Chr4g0055081 35.377 212 129 4 4 214 2 206 4.32e-40 136
Msa0091610 MtrunA17_Chr3g0123971 36.548 197 122 2 17 213 11 204 4.81e-40 136
Msa0091610 MtrunA17_Chr8g0383261 35.122 205 118 3 15 213 12 207 1.41e-36 127
Msa0091610 MtrunA17_Chr2g0331691 35.922 206 118 4 15 214 10 207 5.07e-36 125
Msa0091610 MtrunA17_Chr4g0004661 35.122 205 120 4 15 213 64 261 8.17e-36 127
Msa0091610 MtrunA17_Chr6g0466301 39.521 167 95 3 15 175 8 174 8.45e-36 125
Msa0091610 MtrunA17_Chr6g0465491 39.521 167 95 3 15 175 8 174 8.45e-36 125
Msa0091610 MtrunA17_Chr1g0201121 35.149 202 121 4 15 208 8 207 2.92e-35 124
Msa0091610 MtrunA17_Chr2g0325101 32.934 167 99 5 15 170 6 170 2.44e-26 100
Msa0091610 MtrunA17_Chr4g0037021 34.091 176 103 6 15 179 6 179 6.23e-26 99.4
Msa0091610 MtrunA17_Chr3g0117931 32.335 167 100 5 15 170 8 172 2.15e-25 98.6
Msa0091610 MtrunA17_Chr1g0178291 40.741 162 88 3 18 179 431 584 2.23e-25 103
Msa0091610 MtrunA17_Chr6g0466161 37.333 150 88 3 32 175 7 156 2.57e-25 98.2
Msa0091610 MtrunA17_Chr6g0465471 37.333 150 88 3 32 175 7 156 2.73e-25 98.2
Msa0091610 MtrunA17_Chr3g0138121 28.910 211 140 6 3 208 2 207 3.26e-25 98.2
Msa0091610 MtrunA17_Chr3g0138111 28.638 213 135 6 3 203 2 209 3.95e-25 98.2
Msa0091610 MtrunA17_Chr3g0138101 28.638 213 135 6 3 203 2 209 4.72e-25 97.8
Msa0091610 MtrunA17_Chr8g0371501 32.335 167 100 6 15 170 6 170 5.37e-24 94.4
Msa0091610 MtrunA17_Chr6g0486041 31.138 167 102 5 15 170 6 170 1.09e-23 94.0
Msa0091610 MtrunA17_Chr5g0405791 32.335 167 100 6 15 170 6 170 1.35e-23 93.6
Msa0091610 MtrunA17_Chr4g0046211 35.484 124 77 3 15 137 6 127 4.59e-23 90.5
Msa0091610 MtrunA17_Chr6g0466431 35.789 95 52 1 15 109 8 93 5.94e-17 73.2
Msa0091610 MtrunA17_Chr6g0465611 35.789 95 52 1 15 109 8 93 5.94e-17 73.2
Msa0091610 MtrunA17_Chr5g0443631 25.466 161 111 3 16 170 105 262 1.48e-12 65.1
Msa0091610 MtrunA17_Chr5g0434561 29.878 164 96 6 16 170 20 173 1.19e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0091610 AT5G59840.1 92.683 205 15 0 11 215 11 215 1.11e-141 394
Msa0091610 AT3G46060.2 92.195 205 16 0 11 215 11 215 1.65e-141 394
Msa0091610 AT3G46060.3 92.195 205 16 0 11 215 11 215 1.65e-141 394
Msa0091610 AT3G46060.1 92.195 205 16 0 11 215 11 215 1.65e-141 394
Msa0091610 AT3G53610.2 91.220 205 18 0 11 215 11 215 3.94e-140 390
Msa0091610 AT3G53610.3 91.220 205 18 0 11 215 11 215 3.94e-140 390
Msa0091610 AT3G53610.1 91.220 205 18 0 11 215 11 215 3.94e-140 390
Msa0091610 AT5G03520.1 85.981 214 29 1 1 214 1 213 5.31e-130 365
Msa0091610 AT3G09900.1 84.186 215 33 1 1 214 1 215 1.41e-127 359
Msa0091610 AT5G03520.2 80.114 176 34 1 39 214 29 203 7.03e-102 293
Msa0091610 AT1G02130.1 59.903 207 73 3 10 214 3 201 3.18e-88 259
Msa0091610 AT4G17530.1 57.767 206 78 3 10 214 3 200 6.43e-83 245
Msa0091610 AT5G47200.1 57.767 206 78 3 10 214 3 200 2.47e-82 244
Msa0091610 AT3G11730.1 56.938 209 78 4 11 215 4 204 8.92e-81 240
Msa0091610 AT4G35860.1 49.524 210 99 4 12 215 3 211 1.03e-65 202
Msa0091610 AT4G17170.1 47.143 210 104 3 12 215 3 211 1.53e-62 194
Msa0091610 AT4G17160.1 47.573 206 103 3 12 215 3 205 3.52e-62 192
Msa0091610 AT1G09630.1 44.340 212 113 2 7 214 4 214 3.37e-59 186
Msa0091610 AT4G18430.1 44.444 216 107 3 7 214 5 215 2.26e-58 183
Msa0091610 AT1G16920.1 45.413 218 107 4 4 214 2 214 9.32e-58 182
Msa0091610 AT5G59150.1 42.202 218 110 3 7 214 4 215 3.39e-57 180
Msa0091610 AT1G07410.1 41.905 210 119 2 7 214 4 212 6.85e-57 179
Msa0091610 AT5G60860.1 43.379 219 111 3 4 214 2 215 9.96e-57 179
Msa0091610 AT3G46830.1 49.708 171 85 1 7 177 4 173 4.46e-56 177
Msa0091610 AT3G46830.2 49.708 171 85 1 7 177 4 173 4.46e-56 177
Msa0091610 AT3G15060.1 44.091 220 108 4 4 214 2 215 6.19e-56 177
Msa0091610 AT5G47520.1 44.601 213 102 5 13 214 12 219 2.96e-55 176
Msa0091610 AT5G45750.1 42.056 214 120 2 4 214 2 214 3.69e-55 175
Msa0091610 AT2G33870.1 43.119 218 110 4 7 215 5 217 1.08e-54 174
Msa0091610 AT4G39990.1 43.750 208 110 3 13 214 15 221 3.82e-54 173
Msa0091610 AT4G18800.1 42.453 212 120 2 4 214 2 212 6.66e-54 172
Msa0091610 AT1G28550.1 42.857 217 110 4 7 214 5 216 7.77e-54 172
Msa0091610 AT2G43130.1 40.686 204 118 2 13 214 10 212 9.13e-54 171
Msa0091610 AT1G06400.1 42.056 214 120 2 4 214 2 214 1.42e-53 171
Msa0091610 AT1G01200.1 47.337 169 89 0 13 181 26 194 6.44e-53 170
Msa0091610 AT3G07410.1 49.697 165 82 1 13 177 10 173 9.88e-53 169
Msa0091610 AT1G05810.1 41.063 207 116 3 13 214 10 215 3.40e-52 167
Msa0091610 AT1G43890.3 45.455 198 104 4 6 201 4 199 5.63e-52 167
Msa0091610 AT1G43890.1 45.455 198 104 4 6 201 4 199 5.63e-52 167
Msa0091610 AT1G43890.2 45.455 198 104 4 6 201 4 199 5.63e-52 167
Msa0091610 AT1G05810.2 41.063 207 116 3 13 214 56 261 1.07e-51 168
Msa0091610 AT5G47960.1 48.485 165 84 1 13 177 13 176 1.43e-51 166
Msa0091610 AT2G31680.1 47.273 165 86 1 13 177 10 173 1.45e-51 166
Msa0091610 AT1G18200.1 49.133 173 87 1 13 185 11 182 5.17e-51 165
Msa0091610 AT5G03530.2 45.024 211 105 6 8 214 6 209 7.18e-51 164
Msa0091610 AT5G03530.1 45.024 211 105 6 8 214 6 209 7.18e-51 164
Msa0091610 AT5G65270.1 40.758 211 115 4 13 214 15 224 7.97e-51 164
Msa0091610 AT1G73640.1 46.809 188 95 2 13 196 11 197 2.40e-50 163
Msa0091610 AT3G12160.1 40.670 209 117 2 13 215 13 220 4.43e-50 162
Msa0091610 AT3G54840.1 44.382 178 94 3 3 179 24 197 3.49e-48 157
Msa0091610 AT3G54840.2 46.154 169 86 3 3 170 24 188 1.30e-47 155
Msa0091610 AT3G54840.3 44.767 172 89 3 18 188 2 168 1.10e-46 152
Msa0091610 AT4G35860.2 47.879 165 79 4 57 215 2 165 7.90e-46 150
Msa0091610 AT3G09910.5 44.792 192 102 4 8 197 6 195 1.06e-44 148
Msa0091610 AT3G09910.4 44.792 192 102 4 8 197 6 195 1.06e-44 148
Msa0091610 AT4G19640.1 39.196 199 111 4 17 215 12 200 7.68e-43 143
Msa0091610 AT3G09910.3 47.126 174 88 4 8 179 6 177 5.28e-42 141
Msa0091610 AT3G09910.1 47.126 174 88 4 8 179 6 177 5.28e-42 141
Msa0091610 AT3G09910.2 47.126 174 88 4 8 179 6 177 5.28e-42 141
Msa0091610 AT2G44610.1 37.559 213 125 4 4 215 2 207 1.04e-41 140
Msa0091610 AT5G45130.1 37.000 200 114 4 17 215 12 200 1.20e-41 140
Msa0091610 AT5G10260.1 37.186 199 122 2 17 215 11 206 5.52e-41 139
Msa0091610 AT3G18820.1 42.135 178 93 4 5 176 2 175 5.60e-41 139
Msa0091610 AT4G39890.1 43.396 159 88 2 17 174 11 168 5.90e-41 139
Msa0091610 AT2G22290.1 36.869 198 122 2 17 214 11 205 1.28e-40 138
Msa0091610 AT5G45130.2 36.364 198 114 4 19 215 22 208 7.99e-40 135
Msa0091610 AT5G59150.2 39.881 168 85 3 57 214 3 164 1.13e-37 129
Msa0091610 AT1G52280.1 37.073 205 115 4 15 213 8 204 1.79e-37 130
Msa0091610 AT4G09720.1 39.378 193 101 4 15 191 8 200 1.83e-37 129
Msa0091610 AT1G49300.2 37.624 202 107 6 5 191 2 199 2.10e-37 129
Msa0091610 AT1G49300.1 37.624 202 107 6 5 191 2 199 2.10e-37 129
Msa0091610 AT5G64990.1 41.401 157 91 1 17 173 9 164 2.04e-36 127
Msa0091610 AT1G22740.1 40.719 167 93 3 15 175 8 174 4.60e-36 126
Msa0091610 AT3G16100.1 41.071 168 93 2 15 176 8 175 4.88e-36 126
Msa0091610 AT4G09720.4 38.889 198 100 5 15 191 8 205 1.36e-35 125
Msa0091610 AT2G21880.1 37.725 167 98 2 15 175 9 175 4.56e-35 124
Msa0091610 AT4G09720.3 37.255 204 101 5 15 191 8 211 3.78e-34 121
Msa0091610 AT5G64990.2 39.634 164 91 2 17 173 9 171 1.11e-33 120
Msa0091610 AT5G39620.1 38.462 169 92 3 16 175 6 171 1.22e-33 120
Msa0091610 AT4G19640.2 39.669 121 73 0 17 137 12 132 2.24e-30 110
Msa0091610 AT4G19640.3 39.669 121 73 0 17 137 12 132 1.26e-29 109
Msa0091610 AT4G09720.6 39.634 164 83 4 44 191 3 166 1.80e-28 105
Msa0091610 AT4G09720.5 39.634 164 83 4 44 191 3 166 1.80e-28 105
Msa0091610 AT4G09720.2 39.634 164 83 4 44 191 3 166 1.80e-28 105
Msa0091610 AT4G35020.1 35.928 167 94 6 15 170 6 170 1.23e-27 104
Msa0091610 AT4G35020.2 35.928 167 94 6 15 170 6 170 1.23e-27 104
Msa0091610 AT4G35020.3 35.928 167 94 6 15 170 6 170 1.23e-27 104
Msa0091610 AT2G21880.4 37.324 142 83 2 40 175 9 150 5.87e-27 102
Msa0091610 AT2G21880.3 37.324 142 83 2 40 175 9 150 5.87e-27 102
Msa0091610 AT5G20010.1 28.972 214 142 6 3 212 2 209 2.07e-26 101
Msa0091610 AT3G48040.1 32.934 167 99 5 15 170 8 172 2.32e-26 101
Msa0091610 AT2G44690.1 32.335 167 100 5 15 170 18 182 2.40e-26 101
Msa0091610 AT5G62880.1 31.844 179 109 5 15 182 8 184 4.78e-26 100
Msa0091610 AT5G45970.1 31.138 167 102 5 15 170 6 170 5.99e-26 100
Msa0091610 AT1G20090.1 34.132 167 97 6 15 170 5 169 2.09e-25 98.6
Msa0091610 AT3G51300.1 32.335 167 100 6 15 170 6 170 2.31e-25 98.2
Msa0091610 AT1G75840.1 33.533 167 98 6 15 170 6 170 2.56e-25 98.2
Msa0091610 AT2G21880.2 32.934 167 98 3 15 175 9 167 3.09e-25 98.2
Msa0091610 AT5G55190.1 28.037 214 142 6 3 209 2 210 6.18e-25 97.8
Msa0091610 AT2G17800.2 32.934 167 99 6 15 170 6 170 8.99e-25 96.7
Msa0091610 AT2G17800.1 32.934 167 99 6 15 170 6 170 8.99e-25 96.7
Msa0091610 AT5G55080.1 32.716 162 105 3 16 177 14 171 1.12e-24 97.1
Msa0091610 AT5G20020.1 30.286 175 117 4 3 177 2 171 1.24e-24 97.1
Msa0091610 AT4G28950.1 31.515 165 102 5 15 170 6 168 3.49e-24 95.5
Msa0091610 AT4G35950.1 32.335 167 100 6 15 170 6 170 7.98e-24 94.4
Msa0091610 AT3G48040.2 32.704 159 94 5 15 162 8 164 1.02e-23 93.6
Msa0091610 AT5G62880.2 32.317 164 98 5 15 167 8 169 8.44e-23 91.7
Msa0091610 AT4G35020.4 37.069 116 70 3 15 129 6 119 1.20e-19 82.0
Msa0091610 AT4G35020.5 37.069 116 70 3 15 129 6 119 1.20e-19 82.0
Msa0091610 AT5G46025.1 35.294 102 64 2 77 177 6 106 2.91e-15 69.7
Msa0091610 AT3G51290.2 30.769 143 86 6 44 175 636 776 3.28e-13 68.6
Msa0091610 AT5G37680.1 27.439 164 100 5 16 170 20 173 8.59e-12 62.0
Msa0091610 AT2G15310.1 28.058 139 88 6 16 153 18 145 1.78e-11 61.6

Find 76 sgRNAs with CRISPR-Local

Find 219 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACGCATTAAGTTGCAAATT+TGG 0.124150 1_2:+73723149 Msa0091610:CDS
CTTCTTTCTGTTCAGATATT+AGG 0.164910 1_2:+73723703 Msa0091610:intron
TAACGGAAAGAACCAGTATT+TGG 0.222249 1_2:+73724557 Msa0091610:exon
CTCATCAAGCTTCTTCTTAT+CGG 0.235582 1_2:+73721590 Msa0091610:CDS
GTTGGTTAATCTTGATACTC+TGG 0.323408 1_2:-73724481 None:intergenic
CATTGGCTGCCTGGTCTTGT+TGG 0.332079 1_2:-73724499 None:intergenic
ACGCATTAAGTTGCAAATTT+GGG 0.344668 1_2:+73723150 Msa0091610:CDS
AATCGGCTTGCTGCGGTTAA+CGG 0.352175 1_2:+73724540 Msa0091610:CDS
ACGAATAGCTTCTAACTATT+CGG 0.354488 1_2:+73721475 Msa0091610:five_prime_UTR
TGTGGGAAACAAGGCTGATA+TGG 0.357144 1_2:+73723779 Msa0091610:CDS
TTGGTTAATCTTGATACTCT+GGG 0.358486 1_2:-73724480 None:intergenic
TGGAGCCATGGGTATCTTGC+TGG 0.359100 1_2:+73723375 Msa0091610:CDS
ATATCTTGACAAATAGATTA+TGG 0.365179 1_2:+73724769 Msa0091610:three_prime_UTR
CCTGACCACCATTGGCTGCC+TGG 0.367231 1_2:-73724508 None:intergenic
CCGATCTCTGTGCTGTGCTT+TGG 0.379544 1_2:+73721507 Msa0091610:five_prime_UTR
ATCAGCAAGAGCTTGACCTT+TGG 0.383335 1_2:-73724030 None:intergenic
CAAGCTCTTGCTGATGAGTA+TGG 0.383437 1_2:+73724038 Msa0091610:CDS
ATAAGAACCATTGAACTTGA+TGG 0.385351 1_2:+73723124 Msa0091610:CDS
GAAGAGGGTGGGGCCGAATC+TGG 0.396944 1_2:+73721274 Msa0091610:five_prime_UTR
TAATCGGCACGAGCTCTTGC+AGG 0.397197 1_2:-73721560 None:intergenic
TCTGTTCAGATATTAGGAAT+TGG 0.400880 1_2:+73723709 Msa0091610:intron
CTGATATGGATGAAAGTAAA+CGG 0.401383 1_2:+73723793 Msa0091610:CDS
CCAGGCAGCCAATGGTGGTC+AGG 0.405180 1_2:+73724508 Msa0091610:CDS
AACGGAAAGAACCAGTATTT+GGG 0.406450 1_2:+73724558 Msa0091610:exon
TAACATTAGCACCCAAATAC+TGG 0.409918 1_2:-73724569 None:intergenic
AATTTGGGACACAGCTGGTC+AGG 0.423871 1_2:+73723165 Msa0091610:CDS
AGTTAGAAGCTATTCGTTGT+TGG 0.433064 1_2:-73721469 None:intergenic
CCCAATGGTGGTGATAAAAC+TGG 0.440887 1_2:-73722626 None:intergenic
CTTGATGAGGTAATCGTAAT+CGG 0.447072 1_2:-73721576 None:intergenic
AGCAAGAGCTTGACCTTTGG+AGG 0.448218 1_2:-73724027 None:intergenic
GCGTTTGCCATCAAGTTCAA+TGG 0.456159 1_2:-73723131 None:intergenic
GGGCCGAATCTGGTGTGTGC+AGG 0.458815 1_2:+73721284 Msa0091610:five_prime_UTR
AATGTAAACAAGATACTTGT+GGG 0.475156 1_2:+73723762 Msa0091610:CDS
ACTCCTGCACACACCAGATT+CGG 0.478127 1_2:-73721287 None:intergenic
TCGTTGTTGGCGACATGGAA+TGG 0.479080 1_2:-73721456 None:intergenic
AGCTTATTATCGTGGAGCCA+TGG 0.483620 1_2:+73723363 Msa0091610:intron
TGTGAAGTTGGAAGATAAAG+AGG 0.496857 1_2:-73724631 None:intergenic
TTACAATTATGGATGCTGAA+TGG 0.498273 1_2:+73721222 None:intergenic
CACAGCACAGAGATCGGAAT+CGG 0.499162 1_2:-73721501 None:intergenic
TGATATGGATGAAAGTAAAC+GGG 0.500423 1_2:+73723794 Msa0091610:CDS
TATTCTGATGACAATATTAG+TGG 0.503959 1_2:+73724590 Msa0091610:three_prime_UTR
ACATACCTGTAGTAATAGTT+CGG 0.505948 1_2:-73723195 None:intergenic
TAAAACAAGACATGTGAAGT+TGG 0.515497 1_2:-73724643 None:intergenic
CAAGATACTTGTGGGAAACA+AGG 0.517167 1_2:+73723770 Msa0091610:CDS
TTGTGCAGCCTGACCACCAT+TGG 0.522584 1_2:-73724516 None:intergenic
TTGCAAATTTGGGACACAGC+TGG 0.522901 1_2:+73723160 Msa0091610:CDS
GCTATTCGTTGTTGGCGACA+TGG 0.535062 1_2:-73721461 None:intergenic
CCAAAGCACAGCACAGAGAT+CGG 0.546259 1_2:-73721507 None:intergenic
CTTCTTCTTATCGGCGACAG+TGG 0.546770 1_2:+73721599 Msa0091610:CDS
GTAGTATATTGAAGAGGGTG+GGG 0.550437 1_2:+73721264 Msa0091610:five_prime_UTR
GCTTATTATCGTGGAGCCAT+GGG 0.550907 1_2:+73723364 Msa0091610:intron
CAATGTAAACAAGATACTTG+TGG 0.552374 1_2:+73723761 Msa0091610:CDS
GGTAGTATATTGAAGAGGGT+GGG 0.555056 1_2:+73721263 Msa0091610:five_prime_UTR
TCTGTTGCAGCTTATTATCG+TGG 0.558222 1_2:+73723355 Msa0091610:intron
AGATTCCGAACTATTACTAC+AGG 0.559019 1_2:+73723190 Msa0091610:CDS
AGAGCTTGACCTTTGGAGGT+AGG 0.570506 1_2:-73724023 None:intergenic
CAAGATTAACCAACAAGACC+AGG 0.573376 1_2:+73724490 Msa0091610:CDS
CACAGGTAGTATATTGAAGA+GGG 0.585743 1_2:+73721259 Msa0091610:five_prime_UTR
ACACAGGTAGTATATTGAAG+AGG 0.596277 1_2:+73721258 Msa0091610:five_prime_UTR
AGGTAGTATATTGAAGAGGG+TGG 0.601881 1_2:+73721262 Msa0091610:five_prime_UTR
ATTCTGATGACAATATTAGT+GGG 0.606836 1_2:+73724591 Msa0091610:three_prime_UTR
CAACAAGACCAGGCAGCCAA+TGG 0.612044 1_2:+73724500 Msa0091610:CDS
TACAAATACTAACCCAATGG+TGG 0.615885 1_2:-73722638 None:intergenic
AGACACTGTTTCTAGTACTG+AGG 0.616300 1_2:+73724231 Msa0091610:CDS
TGGTCCAATAAAAGAGACAC+AGG 0.620251 1_2:+73721242 Msa0091610:five_prime_UTR
TAGGCTGTACCTACCTCCAA+AGG 0.624971 1_2:+73724014 Msa0091610:intron
CTCAACTATTTGTAGGTGTG+GGG 0.631205 1_2:+73722560 Msa0091610:intron
TAGCAAGAGATATCAAGCAA+AGG 0.641515 1_2:+73724203 Msa0091610:CDS
GGACTGGTATACTTTGCACG+TGG 0.648609 1_2:-73724799 None:intergenic
GGTGATAAAACTGGTTGTGA+AGG 0.649377 1_2:-73722617 None:intergenic
GTGCAGGAGTATGAAAGTGT+TGG 0.654728 1_2:+73721300 Msa0091610:five_prime_UTR
TGGTTAATCTTGATACTCTG+GGG 0.656186 1_2:-73724479 None:intergenic
GTTGGCGACATGGAATGGAA+TGG 0.657982 1_2:-73721451 None:intergenic
CGATAAGAAGAAGCTTGATG+AGG 0.673490 1_2:-73721589 None:intergenic
CAAGACCAGGCAGCCAATGG+TGG 0.679968 1_2:+73724503 Msa0091610:CDS
GTAAACCAGCAAGATACCCA+TGG 0.687226 1_2:-73723380 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATTATTGTTAACAAATTT+TGG - chr1_2:73721797-73721816 None:intergenic 10.0%
!! CATTAAATTGATGTAAAATT+GGG - chr1_2:73721728-73721747 None:intergenic 15.0%
!! ACATTAAATTGATGTAAAAT+TGG - chr1_2:73721729-73721748 None:intergenic 15.0%
!!! TTAATAAAATTTGTTGAGTA+TGG + chr1_2:73721823-73721842 Msa0091610:intron 15.0%
!! AAAAAATATAGATATATGTC+TGG - chr1_2:73723055-73723074 None:intergenic 15.0%
!! AATCTTATTATAAAAATGCA+TGG + chr1_2:73723085-73723104 Msa0091610:intron 15.0%
!! ATTAGAAAGACAAAAACAAA+AGG + chr1_2:73721995-73722014 Msa0091610:intron 20.0%
!! CATAAGAATAAGAAAAATAG+CGG - chr1_2:73722276-73722295 None:intergenic 20.0%
!! TTCTTATGGAATGAAAATTT+AGG + chr1_2:73722288-73722307 Msa0091610:intron 20.0%
!! TCTTATGGAATGAAAATTTA+GGG + chr1_2:73722289-73722308 Msa0091610:intron 20.0%
!!! GAAAAGTACGTAAAAATAAA+AGG - chr1_2:73722537-73722556 None:intergenic 20.0%
!! AAGAAAAAGAAATAATAGAG+AGG - chr1_2:73724334-73724353 None:intergenic 20.0%
!!! AATGATGATATTTTCTTCTA+TGG + chr1_2:73724448-73724467 Msa0091610:intron 20.0%
!!! TAAGTTTTTTCTCATGTAAT+TGG + chr1_2:73724679-73724698 Msa0091610:three_prime_UTR 20.0%
!! ATATCTTGACAAATAGATTA+TGG + chr1_2:73724769-73724788 Msa0091610:three_prime_UTR 20.0%
! AATATATCATCTCTATTACC+CGG - chr1_2:73721920-73721939 None:intergenic 25.0%
! TTAGTGATAACAAAGAAAAG+AGG + chr1_2:73721946-73721965 Msa0091610:intron 25.0%
! TGTGATATTGAGAAATTTGA+AGG - chr1_2:73722206-73722225 None:intergenic 25.0%
! TCAAATTTCTCAATATCACA+AGG + chr1_2:73722206-73722225 Msa0091610:intron 25.0%
!!! CATAGTAGAATTTTGACTAA+CGG - chr1_2:73722242-73722261 None:intergenic 25.0%
!!! CGCTATTTTTCTTATTCTTA+TGG + chr1_2:73722274-73722293 Msa0091610:intron 25.0%
!! ACCTACCAATTTCATAATTT+TGG + chr1_2:73722377-73722396 Msa0091610:intron 25.0%
! TCCAAAATTATGAAATTGGT+AGG - chr1_2:73722381-73722400 None:intergenic 25.0%
! CTAGTCCAAAATTATGAAAT+TGG - chr1_2:73722385-73722404 None:intergenic 25.0%
! ATTAACTCAAACAAGATACA+AGG - chr1_2:73722488-73722507 None:intergenic 25.0%
! TATTACAAATACTAACCCAA+TGG - chr1_2:73722644-73722663 None:intergenic 25.0%
! TTCTTATTGGTCAAAAACAA+TGG + chr1_2:73722723-73722742 Msa0091610:intron 25.0%
!! TGATATTTGTACATCCATTT+TGG - chr1_2:73722820-73722839 None:intergenic 25.0%
! ATTTAGAAATACAGCAAACT+TGG + chr1_2:73722912-73722931 Msa0091610:intron 25.0%
! TTTAGAAATACAGCAAACTT+GGG + chr1_2:73722913-73722932 Msa0091610:intron 25.0%
! ATATATCAGACAAACTCTAT+AGG - chr1_2:73722939-73722958 None:intergenic 25.0%
! TGTATAAGATGAAGGAAATT+CGG - chr1_2:73723013-73723032 None:intergenic 25.0%
! TACTTATGTGTATAAGATGA+AGG - chr1_2:73723021-73723040 None:intergenic 25.0%
!! TCAATTGATAGTTGTTCATT+TGG + chr1_2:73723248-73723267 Msa0091610:intron 25.0%
! TTTAAGCAGAAATAAGATCA+GGG - chr1_2:73723446-73723465 None:intergenic 25.0%
! AATGTAAACAAGATACTTGT+GGG + chr1_2:73723762-73723781 Msa0091610:CDS 25.0%
! ATGTCAAGTAAAAGTAGAAA+GGG - chr1_2:73723836-73723855 None:intergenic 25.0%
! TTTCCTTCAATACAAACATA+AGG + chr1_2:73723977-73723996 Msa0091610:intron 25.0%
! TTAGCAGAATAAGTAATTGT+TGG - chr1_2:73724374-73724393 None:intergenic 25.0%
! TATTCTGATGACAATATTAG+TGG + chr1_2:73724590-73724609 Msa0091610:three_prime_UTR 25.0%
! ATTCTGATGACAATATTAGT+GGG + chr1_2:73724591-73724610 Msa0091610:three_prime_UTR 25.0%
ACGAATAGCTTCTAACTATT+CGG + chr1_2:73721475-73721494 Msa0091610:five_prime_UTR 30.0%
AAGTGAATAACATGAAGATC+TGG - chr1_2:73721654-73721673 None:intergenic 30.0%
!! TTGGTCTTAAATTTGATGTG+TGG - chr1_2:73721778-73721797 None:intergenic 30.0%
ATATATCATCTCTATTACCC+GGG - chr1_2:73721919-73721938 None:intergenic 30.0%
CGATTCAGAGTATAAAAAGT+TGG + chr1_2:73722099-73722118 Msa0091610:intron 30.0%
GTCAAAATTCTACTATGCTA+TGG + chr1_2:73722245-73722264 Msa0091610:intron 30.0%
TTTCTGACTCAACTATTTGT+AGG + chr1_2:73722553-73722572 Msa0091610:intron 30.0%
!! AACTACTTTTGTACTACTTC+TGG + chr1_2:73722682-73722701 Msa0091610:intron 30.0%
!! ACTACTTTTGTACTACTTCT+GGG + chr1_2:73722683-73722702 Msa0091610:intron 30.0%
AAAACAATGGAGAGAGAAAA+AGG + chr1_2:73722736-73722755 Msa0091610:intron 30.0%
GTACAAAAGTTGTACCAAAA+TGG + chr1_2:73722803-73722822 Msa0091610:intron 30.0%
ATAAGAACCATTGAACTTGA+TGG + chr1_2:73723124-73723143 Msa0091610:CDS 30.0%
! AACGCATTAAGTTGCAAATT+TGG + chr1_2:73723149-73723168 Msa0091610:CDS 30.0%
! ACGCATTAAGTTGCAAATTT+GGG + chr1_2:73723150-73723169 Msa0091610:CDS 30.0%
ACATACCTGTAGTAATAGTT+CGG - chr1_2:73723198-73723217 None:intergenic 30.0%
CTTTAAGCAGAAATAAGATC+AGG - chr1_2:73723447-73723466 None:intergenic 30.0%
CACTAATGTCTGAAAATTGT+AGG + chr1_2:73723494-73723513 Msa0091610:intron 30.0%
AAACAGATCAATTGATTGTC+TGG - chr1_2:73723615-73723634 None:intergenic 30.0%
CTTCTTTCTGTTCAGATATT+AGG + chr1_2:73723703-73723722 Msa0091610:intron 30.0%
TCTGTTCAGATATTAGGAAT+TGG + chr1_2:73723709-73723728 Msa0091610:intron 30.0%
CAATGTAAACAAGATACTTG+TGG + chr1_2:73723761-73723780 Msa0091610:CDS 30.0%
CTGATATGGATGAAAGTAAA+CGG + chr1_2:73723793-73723812 Msa0091610:CDS 30.0%
TGATATGGATGAAAGTAAAC+GGG + chr1_2:73723794-73723813 Msa0091610:CDS 30.0%
GATGTCAAGTAAAAGTAGAA+AGG - chr1_2:73723837-73723856 None:intergenic 30.0%
ACACCTTATGTTTGTATTGA+AGG - chr1_2:73723983-73724002 None:intergenic 30.0%
TGCAAAAACAAACATGAATG+TGG + chr1_2:73724162-73724181 Msa0091610:CDS 30.0%
AAAAACAAACATGAATGTGG+AGG + chr1_2:73724165-73724184 Msa0091610:CDS 30.0%
AGGACTACAAAAATGAAGAT+AGG - chr1_2:73724274-73724293 None:intergenic 30.0%
! TTTGTTGCTTCTTTCTTGTT+TGG + chr1_2:73724415-73724434 Msa0091610:intron 30.0%
! GATGATATTTTCTTCTATGG+TGG + chr1_2:73724451-73724470 Msa0091610:intron 30.0%
TTGGTTAATCTTGATACTCT+GGG - chr1_2:73724483-73724502 None:intergenic 30.0%
TAAAACAAGACATGTGAAGT+TGG - chr1_2:73724646-73724665 None:intergenic 30.0%
!!! GTTTTTTCTCATGTAATTGG+TGG + chr1_2:73724682-73724701 Msa0091610:three_prime_UTR 30.0%
! ACTACCTGTGTCTCTTTTAT+TGG - chr1_2:73721249-73721268 None:intergenic 35.0%
ACACAGGTAGTATATTGAAG+AGG + chr1_2:73721258-73721277 Msa0091610:five_prime_UTR 35.0%
CACAGGTAGTATATTGAAGA+GGG + chr1_2:73721259-73721278 Msa0091610:five_prime_UTR 35.0%
AGTTAGAAGCTATTCGTTGT+TGG - chr1_2:73721472-73721491 None:intergenic 35.0%
CTTGATGAGGTAATCGTAAT+CGG - chr1_2:73721579-73721598 None:intergenic 35.0%
CTCATCAAGCTTCTTCTTAT+CGG + chr1_2:73721590-73721609 Msa0091610:CDS 35.0%
! ATTTGTTGAGTATGGCTTTG+TGG + chr1_2:73721831-73721850 Msa0091610:intron 35.0%
AAGAAAAGAGGAGATGTTGT+TGG + chr1_2:73721958-73721977 Msa0091610:intron 35.0%
GGAAAAAGATGTTTACTCCT+TGG + chr1_2:73722016-73722035 Msa0091610:intron 35.0%
AGATGTTTACTCCTTGGAAA+TGG + chr1_2:73722022-73722041 Msa0091610:intron 35.0%
CATGGTTCAAGTAGTTGTAA+CGG - chr1_2:73722150-73722169 None:intergenic 35.0%
GTTACAACTACTTGAACCAT+GGG + chr1_2:73722149-73722168 Msa0091610:intron 35.0%
GAAATTTGAAGGAAAAGCCA+CGG - chr1_2:73722195-73722214 None:intergenic 35.0%
CTATTTGTGCCAATCACAAT+TGG + chr1_2:73722441-73722460 Msa0091610:intron 35.0%
ACTCAACTATTTGTAGGTGT+GGG + chr1_2:73722559-73722578 Msa0091610:intron 35.0%
!!! TTGCTTTTGAGGTTTTCTGA+TGG + chr1_2:73722592-73722611 Msa0091610:CDS 35.0%
TACAAATACTAACCCAATGG+TGG - chr1_2:73722641-73722660 None:intergenic 35.0%
CCAATAAGAAGAGAACAACA+AGG - chr1_2:73722713-73722732 None:intergenic 35.0%
!! CCTTGTTGTTCTCTTCTTAT+TGG + chr1_2:73722710-73722729 Msa0091610:intron 35.0%
TGTAAACACTTTCTCATCGT+TGG + chr1_2:73722985-73723004 Msa0091610:intron 35.0%
AGATTCCGAACTATTACTAC+AGG + chr1_2:73723190-73723209 Msa0091610:CDS 35.0%
ACTGGGAACTCGTAATTAAT+AGG + chr1_2:73723279-73723298 Msa0091610:intron 35.0%
TTAAGACATGTTCCTTCAAC+AGG - chr1_2:73723325-73723344 None:intergenic 35.0%
AAATAAGATCAGGGAAAGGA+GGG - chr1_2:73723437-73723456 None:intergenic 35.0%
AAAAGGAACAAGAATGGATG+GGG - chr1_2:73723558-73723577 None:intergenic 35.0%
CAAAAGGAACAAGAATGGAT+GGG - chr1_2:73723559-73723578 None:intergenic 35.0%
TCAAAAGGAACAAGAATGGA+TGG - chr1_2:73723560-73723579 None:intergenic 35.0%
AAGGCAAGCAGAATAAACAA+TGG - chr1_2:73723670-73723689 None:intergenic 35.0%
TACTTGACATCTTAGCTGTT+TGG + chr1_2:73723846-73723865 Msa0091610:intron 35.0%
ACTTGACATCTTAGCTGTTT+GGG + chr1_2:73723847-73723866 Msa0091610:intron 35.0%
TCCGTAAGTAAATGTGGTAT+GGG - chr1_2:73723919-73723938 None:intergenic 35.0%
ATCCGTAAGTAAATGTGGTA+TGG - chr1_2:73723920-73723939 None:intergenic 35.0%
!! TAAGGTGTTCGTTTTTCTCT+AGG + chr1_2:73723995-73724014 Msa0091610:intron 35.0%
TAGCAAGAGATATCAAGCAA+AGG + chr1_2:73724203-73724222 Msa0091610:CDS 35.0%
AAGATAGGAAAGAGTCAACA+AGG - chr1_2:73724259-73724278 None:intergenic 35.0%
! ATTTTTGTAGTCCTCAGAAG+TGG + chr1_2:73724280-73724299 Msa0091610:intron 35.0%
GAAATAATAGAGAGGAGAGA+AGG - chr1_2:73724326-73724345 None:intergenic 35.0%
TGGTTAATCTTGATACTCTG+GGG - chr1_2:73724482-73724501 None:intergenic 35.0%
GTTGGTTAATCTTGATACTC+TGG - chr1_2:73724484-73724503 None:intergenic 35.0%
TAACGGAAAGAACCAGTATT+TGG + chr1_2:73724557-73724576 Msa0091610:exon 35.0%
AACGGAAAGAACCAGTATTT+GGG + chr1_2:73724558-73724577 Msa0091610:exon 35.0%
TAACATTAGCACCCAAATAC+TGG - chr1_2:73724572-73724591 None:intergenic 35.0%
TGTGAAGTTGGAAGATAAAG+AGG - chr1_2:73724634-73724653 None:intergenic 35.0%
TGGTCCAATAAAAGAGACAC+AGG + chr1_2:73721242-73721261 Msa0091610:five_prime_UTR 40.0%
AGGTAGTATATTGAAGAGGG+TGG + chr1_2:73721262-73721281 Msa0091610:five_prime_UTR 40.0%
GGTAGTATATTGAAGAGGGT+GGG + chr1_2:73721263-73721282 Msa0091610:five_prime_UTR 40.0%
GTAGTATATTGAAGAGGGTG+GGG + chr1_2:73721264-73721283 Msa0091610:five_prime_UTR 40.0%
!!! GAGTGTTGAATTTTGAGCGA+TGG + chr1_2:73721529-73721548 Msa0091610:exon 40.0%
CGATAAGAAGAAGCTTGATG+AGG - chr1_2:73721592-73721611 None:intergenic 40.0%
GAAAGTAGATGACCATAACC+CGG + chr1_2:73721898-73721917 Msa0091610:intron 40.0%
AAAGTAGATGACCATAACCC+GGG + chr1_2:73721899-73721918 Msa0091610:intron 40.0%
GAGATGTTGTTGGAAAAGAG+AGG + chr1_2:73721968-73721987 Msa0091610:intron 40.0%
CCAGTAATCTTCCATTTCCA+AGG - chr1_2:73722036-73722055 None:intergenic 40.0%
CCTTGGAAATGGAAGATTAC+TGG + chr1_2:73722033-73722052 Msa0091610:intron 40.0%
GGAAGATTACTGGAGAATAG+AGG + chr1_2:73722043-73722062 Msa0091610:intron 40.0%
AAGTTGGAGTCTTTCATACG+AGG + chr1_2:73722115-73722134 Msa0091610:intron 40.0%
AGTAGTTGTAACGGTAACAG+TGG - chr1_2:73722141-73722160 None:intergenic 40.0%
CGTTACAACTACTTGAACCA+TGG + chr1_2:73722148-73722167 Msa0091610:intron 40.0%
TTGTAAATCCTCAACGAGGT+TGG - chr1_2:73722342-73722361 None:intergenic 40.0%
ACCTCGTTGAGGATTTACAA+TGG + chr1_2:73722342-73722361 Msa0091610:intron 40.0%
TCCATTGTAAATCCTCAACG+AGG - chr1_2:73722346-73722365 None:intergenic 40.0%
ACTAGATCTCATATCACAGC+TGG + chr1_2:73722400-73722419 Msa0091610:intron 40.0%
GACTCAACTATTTGTAGGTG+TGG + chr1_2:73722558-73722577 Msa0091610:intron 40.0%
CTCAACTATTTGTAGGTGTG+GGG + chr1_2:73722560-73722579 Msa0091610:intron 40.0%
!! GGAAGAGTTGTTTGCTTTTG+AGG + chr1_2:73722581-73722600 Msa0091610:CDS 40.0%
GGTGATAAAACTGGTTGTGA+AGG - chr1_2:73722620-73722639 None:intergenic 40.0%
!! ACCAGTTTTATCACCACCAT+TGG + chr1_2:73722625-73722644 Msa0091610:CDS 40.0%
!! CCAGTTTTATCACCACCATT+GGG + chr1_2:73722626-73722645 Msa0091610:CDS 40.0%
TTCATTTGGTCCCATACACT+GGG + chr1_2:73723262-73723281 Msa0091610:intron 40.0%
ATTACGAGTTCCCAGTGTAT+GGG - chr1_2:73723275-73723294 None:intergenic 40.0%
AATTACGAGTTCCCAGTGTA+TGG - chr1_2:73723276-73723295 None:intergenic 40.0%
TTTACCCACATTCCTGTTGA+AGG + chr1_2:73723310-73723329 Msa0091610:intron 40.0%
TGTTCCTTCAACAGGAATGT+GGG - chr1_2:73723317-73723336 None:intergenic 40.0%
ATGTTCCTTCAACAGGAATG+TGG - chr1_2:73723318-73723337 None:intergenic 40.0%
TCTGTTGCAGCTTATTATCG+TGG + chr1_2:73723355-73723374 Msa0091610:intron 40.0%
GAAATAAGATCAGGGAAAGG+AGG - chr1_2:73723438-73723457 None:intergenic 40.0%
GCAGAAATAAGATCAGGGAA+AGG - chr1_2:73723441-73723460 None:intergenic 40.0%
GAATGGATGGGGAAATAAGA+AGG - chr1_2:73723547-73723566 None:intergenic 40.0%
GAGGTCAAAAGGAACAAGAA+TGG - chr1_2:73723564-73723583 None:intergenic 40.0%
!! GGAGAGTATTAGAGGTCAAA+AGG - chr1_2:73723575-73723594 None:intergenic 40.0%
! CTGGCTAGTTAAATGTGAGT+CGG - chr1_2:73723596-73723615 None:intergenic 40.0%
! AAGAAGCGTGCTACATCAAA+AGG - chr1_2:73723689-73723708 None:intergenic 40.0%
CAAGATACTTGTGGGAAACA+AGG + chr1_2:73723770-73723789 Msa0091610:CDS 40.0%
CTTGACATCTTAGCTGTTTG+GGG + chr1_2:73723848-73723867 Msa0091610:intron 40.0%
GCCCATACCACATTTACTTA+CGG + chr1_2:73723915-73723934 Msa0091610:intron 40.0%
CTCAGATCCGTAAGTAAATG+TGG - chr1_2:73723925-73723944 None:intergenic 40.0%
!! AGACACTGTTTCTAGTACTG+AGG + chr1_2:73724231-73724250 Msa0091610:CDS 40.0%
TGCATAAACTTCCACTTCTG+AGG - chr1_2:73724294-73724313 None:intergenic 40.0%
CAAGATTAACCAACAAGACC+AGG + chr1_2:73724490-73724509 Msa0091610:CDS 40.0%
! GTGCAGGAGTATGAAAGTGT+TGG + chr1_2:73721300-73721319 Msa0091610:five_prime_UTR 45.0%
CATCTCTATTACCCGGGTTA+TGG - chr1_2:73721913-73721932 None:intergenic 45.0%
! AAATCCTCAACGAGGTTGGT+GGG - chr1_2:73722338-73722357 None:intergenic 45.0%
TAAATCCTCAACGAGGTTGG+TGG - chr1_2:73722339-73722358 None:intergenic 45.0%
AGCGGTGAACCAATTGTGAT+TGG - chr1_2:73722453-73722472 None:intergenic 45.0%
ACAAGGCCATCAAATTGCAG+CGG - chr1_2:73722471-73722490 None:intergenic 45.0%
! CCCAATGGTGGTGATAAAAC+TGG - chr1_2:73722629-73722648 None:intergenic 45.0%
GCGTTTGCCATCAAGTTCAA+TGG - chr1_2:73723134-73723153 None:intergenic 45.0%
! TTGCAAATTTGGGACACAGC+TGG + chr1_2:73723160-73723179 Msa0091610:CDS 45.0%
GTTCATTTGGTCCCATACAC+TGG + chr1_2:73723261-73723280 Msa0091610:intron 45.0%
AGCTTATTATCGTGGAGCCA+TGG + chr1_2:73723363-73723382 Msa0091610:intron 45.0%
GCTTATTATCGTGGAGCCAT+GGG + chr1_2:73723364-73723383 Msa0091610:intron 45.0%
GTAAACCAGCAAGATACCCA+TGG - chr1_2:73723383-73723402 None:intergenic 45.0%
!! TGTGAGTCGGAGAGTATTAG+AGG - chr1_2:73723583-73723602 None:intergenic 45.0%
TGTGGGAAACAAGGCTGATA+TGG + chr1_2:73723779-73723798 Msa0091610:CDS 45.0%
! TCTTAGCTGTTTGGGGTATG+AGG + chr1_2:73723855-73723874 Msa0091610:intron 45.0%
ATCAGCAAGAGCTTGACCTT+TGG - chr1_2:73724033-73724052 None:intergenic 45.0%
CAAGCTCTTGCTGATGAGTA+TGG + chr1_2:73724038-73724057 Msa0091610:CDS 45.0%
TGGTCAGGCTGCACAAAAAT+CGG + chr1_2:73724523-73724542 Msa0091610:CDS 45.0%
ACTCCTGCACACACCAGATT+CGG - chr1_2:73721290-73721309 None:intergenic 50.0%
GTTGGCGACATGGAATGGAA+TGG - chr1_2:73721454-73721473 None:intergenic 50.0%
TCGTTGTTGGCGACATGGAA+TGG - chr1_2:73721459-73721478 None:intergenic 50.0%
GCTATTCGTTGTTGGCGACA+TGG - chr1_2:73721464-73721483 None:intergenic 50.0%
CACAGCACAGAGATCGGAAT+CGG - chr1_2:73721504-73721523 None:intergenic 50.0%
CCAAAGCACAGCACAGAGAT+CGG - chr1_2:73721510-73721529 None:intergenic 50.0%
CTTCTTCTTATCGGCGACAG+TGG + chr1_2:73721599-73721618 Msa0091610:CDS 50.0%
!!! AACGAGGTTGGTGGGTCTTT+TGG - chr1_2:73722330-73722349 None:intergenic 50.0%
GGTTCACCGCTGCAATTTGA+TGG + chr1_2:73722462-73722481 Msa0091610:intron 50.0%
! AATTTGGGACACAGCTGGTC+AGG + chr1_2:73723165-73723184 Msa0091610:CDS 50.0%
AAACGGGTATGTCCATCTCG+AGG + chr1_2:73723810-73723829 Msa0091610:intron 50.0%
AAGTAGAAAGGGCCTCGAGA+TGG - chr1_2:73723825-73723844 None:intergenic 50.0%
TAGGCTGTACCTACCTCCAA+AGG + chr1_2:73724014-73724033 Msa0091610:intron 50.0%
! AGAGCTTGACCTTTGGAGGT+AGG - chr1_2:73724026-73724045 None:intergenic 50.0%
AGCAAGAGCTTGACCTTTGG+AGG - chr1_2:73724030-73724049 None:intergenic 50.0%
!! GCACAAAAATCGGCTTGCTG+CGG + chr1_2:73724533-73724552 Msa0091610:CDS 50.0%
!! AATCGGCTTGCTGCGGTTAA+CGG + chr1_2:73724540-73724559 Msa0091610:CDS 50.0%
! GGACTGGTATACTTTGCACG+TGG - chr1_2:73724802-73724821 None:intergenic 50.0%
CGCAGAGAGAGAGAGAGAGA+GGG + chr1_2:73721351-73721370 Msa0091610:five_prime_UTR 55.0%
CCGATCTCTGTGCTGTGCTT+TGG + chr1_2:73721507-73721526 Msa0091610:five_prime_UTR 55.0%
TAATCGGCACGAGCTCTTGC+AGG - chr1_2:73721563-73721582 None:intergenic 55.0%
! AACCATGGGTGCCACGAGAA+TGG + chr1_2:73722163-73722182 Msa0091610:intron 55.0%
!!! GGTTGGTGGGTCTTTTGGCA+TGG - chr1_2:73722325-73722344 None:intergenic 55.0%
AAGACCCACCAACCTCGTTG+AGG + chr1_2:73722331-73722350 Msa0091610:intron 55.0%
TGGAGCCATGGGTATCTTGC+TGG + chr1_2:73723375-73723394 Msa0091610:CDS 55.0%
!! CATTGGCTGCCTGGTCTTGT+TGG - chr1_2:73724502-73724521 None:intergenic 55.0%
CAACAAGACCAGGCAGCCAA+TGG + chr1_2:73724500-73724519 Msa0091610:CDS 55.0%
TTGTGCAGCCTGACCACCAT+TGG - chr1_2:73724519-73724538 None:intergenic 55.0%
GCGCAGAGAGAGAGAGAGAG+AGG + chr1_2:73721350-73721369 Msa0091610:five_prime_UTR 60.0%
TGCCATTCTCGTGGCACCCA+TGG - chr1_2:73722168-73722187 None:intergenic 60.0%
CACGGCAACTGCCATTCTCG+TGG - chr1_2:73722177-73722196 None:intergenic 60.0%
CACGAGAATGGCAGTTGCCG+TGG + chr1_2:73722175-73722194 Msa0091610:intron 60.0%
CAAGACCAGGCAGCCAATGG+TGG + chr1_2:73724503-73724522 Msa0091610:CDS 60.0%
GAAGAGGGTGGGGCCGAATC+TGG + chr1_2:73721274-73721293 Msa0091610:five_prime_UTR 65.0%
GGGCCGAATCTGGTGTGTGC+AGG + chr1_2:73721284-73721303 Msa0091610:five_prime_UTR 65.0%
! CCTGACCACCATTGGCTGCC+TGG - chr1_2:73724511-73724530 None:intergenic 65.0%
CCAGGCAGCCAATGGTGGTC+AGG + chr1_2:73724508-73724527 Msa0091610:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 73721225 73724823 73721225 ID=Msa0091610;Name=Msa0091610
chr1_2 mRNA 73721225 73724823 73721225 ID=Msa0091610-mRNA-1;Parent=Msa0091610;Name=Msa0091610-mRNA-1;_AED=0.07;_eAED=0.07;_QI=323|1|1|1|1|1|8|264|215
chr1_2 exon 73721225 73721620 73721225 ID=Msa0091610-mRNA-1:exon:25911;Parent=Msa0091610-mRNA-1
chr1_2 exon 73722575 73722647 73722575 ID=Msa0091610-mRNA-1:exon:25912;Parent=Msa0091610-mRNA-1
chr1_2 exon 73723111 73723211 73723111 ID=Msa0091610-mRNA-1:exon:25913;Parent=Msa0091610-mRNA-1
chr1_2 exon 73723365 73723430 73723365 ID=Msa0091610-mRNA-1:exon:25914;Parent=Msa0091610-mRNA-1
chr1_2 exon 73723718 73723815 73723718 ID=Msa0091610-mRNA-1:exon:25915;Parent=Msa0091610-mRNA-1
chr1_2 exon 73724017 73724079 73724017 ID=Msa0091610-mRNA-1:exon:25916;Parent=Msa0091610-mRNA-1
chr1_2 exon 73724160 73724252 73724160 ID=Msa0091610-mRNA-1:exon:25917;Parent=Msa0091610-mRNA-1
chr1_2 exon 73724479 73724823 73724479 ID=Msa0091610-mRNA-1:exon:25918;Parent=Msa0091610-mRNA-1
chr1_2 five_prime_UTR 73721225 73721547 73721225 ID=Msa0091610-mRNA-1:five_prime_utr;Parent=Msa0091610-mRNA-1
chr1_2 CDS 73721548 73721620 73721548 ID=Msa0091610-mRNA-1:cds;Parent=Msa0091610-mRNA-1
chr1_2 CDS 73722575 73722647 73722575 ID=Msa0091610-mRNA-1:cds;Parent=Msa0091610-mRNA-1
chr1_2 CDS 73723111 73723211 73723111 ID=Msa0091610-mRNA-1:cds;Parent=Msa0091610-mRNA-1
chr1_2 CDS 73723365 73723430 73723365 ID=Msa0091610-mRNA-1:cds;Parent=Msa0091610-mRNA-1
chr1_2 CDS 73723718 73723815 73723718 ID=Msa0091610-mRNA-1:cds;Parent=Msa0091610-mRNA-1
chr1_2 CDS 73724017 73724079 73724017 ID=Msa0091610-mRNA-1:cds;Parent=Msa0091610-mRNA-1
chr1_2 CDS 73724160 73724252 73724160 ID=Msa0091610-mRNA-1:cds;Parent=Msa0091610-mRNA-1
chr1_2 CDS 73724479 73724559 73724479 ID=Msa0091610-mRNA-1:cds;Parent=Msa0091610-mRNA-1
chr1_2 three_prime_UTR 73724560 73724823 73724560 ID=Msa0091610-mRNA-1:three_prime_utr;Parent=Msa0091610-mRNA-1
Gene Sequence

>Msa0091610

ATGGCAGCAGCACCTGCAAGAGCTCGTGCCGATTACGATTACCTCATCAAGCTTCTTCTTATCGGCGACAGTGGTGTGGGGAAGAGTTGTTTGCTTTTGAGGTTTTCTGATGGCTCCTTCACAACCAGTTTTATCACCACCATTGGCATTGATTTCAAGATAAGAACCATTGAACTTGATGGCAAACGCATTAAGTTGCAAATTTGGGACACAGCTGGTCAGGAGAGATTCCGAACTATTACTACAGCTTATTATCGTGGAGCCATGGGTATCTTGCTGGTTTACGATGTTACTGATGAAGCTTCTTTCAATAATATTAGGAATTGGATTCGCAATATTGAACAACATGCTTCTGACAATGTAAACAAGATACTTGTGGGAAACAAGGCTGATATGGATGAAAGTAAACGGGCTGTACCTACCTCCAAAGGTCAAGCTCTTGCTGATGAGTATGGTATCAAGTTCTTTGAAACTAGTGCAAAAACAAACATGAATGTGGAGGAAATTTTCTTTTCAATAGCAAGAGATATCAAGCAAAGGCTTGCAGACACTGTTTCTAGTACTGAGCCCCAGAGTATCAAGATTAACCAACAAGACCAGGCAGCCAATGGTGGTCAGGCTGCACAAAAATCGGCTTGCTGCGGTTAA
Protein sequence

>Msa0091610

MAAAPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNMNVEEIFFSIARDIKQRLADTVSSTEPQSIKINQQDQAANGGQAAQKSACCG*