AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1362420


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1362420 MtrunA17_Chr1g0212521 99.535 215 1 0 1 215 1 215 1.17e-160 442
Msa1362420 MtrunA17_Chr1g0182321 91.163 215 19 0 1 215 1 215 1.01e-148 412
Msa1362420 MtrunA17_Chr1g0182301 90.698 215 20 0 1 215 1 215 5.29e-148 410
Msa1362420 MtrunA17_Chr4g0030911 93.659 205 12 1 11 215 11 214 2.86e-141 393
Msa1362420 MtrunA17_Chr7g0263071 94.146 205 12 0 11 215 11 215 1.32e-138 386
Msa1362420 MtrunA17_Chr2g0327911 75.814 215 46 4 4 215 2 213 1.12e-115 328
Msa1362420 MtrunA17_Chr7g0250531 60.194 206 73 3 10 214 3 200 9.51e-87 254
Msa1362420 MtrunA17_Chr4g0055651 58.537 205 76 3 11 214 4 200 2.27e-85 251
Msa1362420 MtrunA17_Chr8g0335471 59.223 206 74 3 11 214 4 201 6.04e-84 248
Msa1362420 MtrunA17_Chr2g0276931 54.146 205 88 2 11 215 5 203 1.35e-78 234
Msa1362420 MtrunA17_Chr6g0458081 48.325 209 101 4 12 214 3 210 1.65e-61 191
Msa1362420 MtrunA17_Chr2g0290891 46.890 209 104 3 12 214 3 210 1.24e-60 189
Msa1362420 MtrunA17_Chr4g0032201 45.370 216 104 5 7 214 4 213 4.25e-60 187
Msa1362420 MtrunA17_Chr3g0112681 44.811 212 104 4 11 214 8 214 2.29e-59 186
Msa1362420 MtrunA17_Chr2g0283131 44.907 216 106 3 7 214 5 215 2.42e-58 183
Msa1362420 MtrunA17_Chr4g0046261 43.056 216 110 3 7 214 5 215 3.84e-57 180
Msa1362420 MtrunA17_Chr4g0040781 43.519 216 109 3 7 214 5 215 1.78e-56 178
Msa1362420 MtrunA17_Chr2g0276941 44.498 209 110 4 11 214 11 218 3.39e-56 177
Msa1362420 MtrunA17_Chr2g0315551 43.721 215 116 2 4 214 2 215 4.43e-56 177
Msa1362420 MtrunA17_Chr7g0265001 46.154 208 100 5 12 214 13 213 2.28e-55 175
Msa1362420 MtrunA17_Chr8g0349711 44.286 210 105 4 14 214 5 211 2.44e-55 175
Msa1362420 MtrunA17_Chr1g0180291 48.293 205 99 6 12 214 11 210 3.43e-55 175
Msa1362420 MtrunA17_Chr1g0189361 43.519 216 103 4 13 214 12 222 5.03e-55 175
Msa1362420 MtrunA17_Chr3g0123821 42.105 209 113 3 13 214 14 221 2.84e-54 173
Msa1362420 MtrunA17_Chr2g0319951 49.425 174 87 1 4 177 2 174 1.15e-53 171
Msa1362420 MtrunA17_Chr3g0130271 45.411 207 104 6 11 214 8 208 2.10e-53 170
Msa1362420 MtrunA17_Chr8g0381841 48.485 165 84 1 13 177 15 178 3.14e-53 170
Msa1362420 MtrunA17_Chr1g0159481 45.933 209 100 7 11 214 13 213 3.75e-53 170
Msa1362420 MtrunA17_Chr1g0197331 43.779 217 113 6 1 214 1 211 4.40e-53 169
Msa1362420 MtrunA17_Chr8g0384311 43.128 211 112 5 6 214 4 208 1.13e-52 168
Msa1362420 MtrunA17_Chr7g0234201 41.667 204 115 2 14 214 12 214 1.21e-52 168
Msa1362420 MtrunA17_Chr8g0349681 47.429 175 91 1 9 183 378 551 6.80e-52 176
Msa1362420 MtrunA17_Chr8g0349681 44.681 188 97 3 12 195 172 356 1.38e-48 167
Msa1362420 MtrunA17_Chr8g0349681 49.045 157 79 1 14 170 12 167 6.67e-46 160
Msa1362420 MtrunA17_Chr2g0325091 42.308 208 114 3 11 214 7 212 3.70e-51 164
Msa1362420 MtrunA17_Chr7g0214241 40.097 207 117 3 14 214 14 219 5.63e-51 164
Msa1362420 MtrunA17_Chr8g0346421 46.667 165 87 1 13 177 24 187 1.52e-50 164
Msa1362420 MtrunA17_Chr8g0351861 41.395 215 111 3 13 214 14 226 2.61e-50 163
Msa1362420 MtrunA17_Chr1g0174281 39.815 216 112 3 13 215 13 223 4.38e-50 162
Msa1362420 MtrunA17_Chr6g0482721 41.429 210 110 4 13 214 10 214 2.07e-49 160
Msa1362420 MtrunA17_Chr7g0275991 42.775 173 98 1 7 179 12 183 9.96e-49 159
Msa1362420 MtrunA17_Chr7g0231131 45.455 165 89 1 13 177 13 176 3.26e-47 155
Msa1362420 MtrunA17_Chr8g0392931 41.546 207 115 3 13 214 12 217 2.88e-46 152
Msa1362420 MtrunA17_Chr8g0390561 39.698 199 109 4 17 215 11 198 5.27e-45 148
Msa1362420 MtrunA17_Chr1g0199331 44.242 165 90 2 16 179 32 195 5.61e-45 148
Msa1362420 MtrunA17_Chr3g0109721 38.384 198 112 4 17 214 12 199 3.30e-44 146
Msa1362420 MtrunA17_Chr5g0433561 38.889 198 111 4 17 214 12 199 1.55e-43 144
Msa1362420 MtrunA17_Chr8g0382221 37.879 198 119 3 17 213 11 205 6.30e-42 140
Msa1362420 MtrunA17_Chr5g0400131 36.967 211 125 4 4 213 2 205 2.99e-41 139
Msa1362420 MtrunA17_Chr4g0034871 39.706 204 103 7 5 192 2 201 2.26e-40 137
Msa1362420 MtrunA17_Chr4g0055081 35.377 212 129 4 4 214 2 206 4.32e-40 136
Msa1362420 MtrunA17_Chr3g0123971 36.548 197 122 2 17 213 11 204 4.81e-40 136
Msa1362420 MtrunA17_Chr8g0383261 35.122 205 118 3 15 213 12 207 1.41e-36 127
Msa1362420 MtrunA17_Chr2g0331691 35.922 206 118 4 15 214 10 207 5.07e-36 125
Msa1362420 MtrunA17_Chr4g0004661 35.122 205 120 4 15 213 64 261 8.17e-36 127
Msa1362420 MtrunA17_Chr6g0466301 39.521 167 95 3 15 175 8 174 8.45e-36 125
Msa1362420 MtrunA17_Chr6g0465491 39.521 167 95 3 15 175 8 174 8.45e-36 125
Msa1362420 MtrunA17_Chr1g0201121 35.149 202 121 4 15 208 8 207 2.92e-35 124
Msa1362420 MtrunA17_Chr2g0325101 32.934 167 99 5 15 170 6 170 2.44e-26 100
Msa1362420 MtrunA17_Chr4g0037021 34.091 176 103 6 15 179 6 179 6.23e-26 99.4
Msa1362420 MtrunA17_Chr3g0117931 32.335 167 100 5 15 170 8 172 2.15e-25 98.6
Msa1362420 MtrunA17_Chr1g0178291 40.741 162 88 3 18 179 431 584 2.23e-25 103
Msa1362420 MtrunA17_Chr6g0466161 37.333 150 88 3 32 175 7 156 2.57e-25 98.2
Msa1362420 MtrunA17_Chr6g0465471 37.333 150 88 3 32 175 7 156 2.73e-25 98.2
Msa1362420 MtrunA17_Chr3g0138121 28.910 211 140 6 3 208 2 207 3.26e-25 98.2
Msa1362420 MtrunA17_Chr3g0138111 28.638 213 135 6 3 203 2 209 3.95e-25 98.2
Msa1362420 MtrunA17_Chr3g0138101 28.638 213 135 6 3 203 2 209 4.72e-25 97.8
Msa1362420 MtrunA17_Chr8g0371501 32.335 167 100 6 15 170 6 170 5.37e-24 94.4
Msa1362420 MtrunA17_Chr6g0486041 31.138 167 102 5 15 170 6 170 1.09e-23 94.0
Msa1362420 MtrunA17_Chr5g0405791 32.335 167 100 6 15 170 6 170 1.35e-23 93.6
Msa1362420 MtrunA17_Chr4g0046211 35.484 124 77 3 15 137 6 127 4.59e-23 90.5
Msa1362420 MtrunA17_Chr6g0466431 35.789 95 52 1 15 109 8 93 5.94e-17 73.2
Msa1362420 MtrunA17_Chr6g0465611 35.789 95 52 1 15 109 8 93 5.94e-17 73.2
Msa1362420 MtrunA17_Chr5g0443631 25.466 161 111 3 16 170 105 262 1.48e-12 65.1
Msa1362420 MtrunA17_Chr5g0434561 29.878 164 96 6 16 170 20 173 1.19e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1362420 AT5G59840.1 92.683 205 15 0 11 215 11 215 1.11e-141 394
Msa1362420 AT3G46060.2 92.195 205 16 0 11 215 11 215 1.65e-141 394
Msa1362420 AT3G46060.3 92.195 205 16 0 11 215 11 215 1.65e-141 394
Msa1362420 AT3G46060.1 92.195 205 16 0 11 215 11 215 1.65e-141 394
Msa1362420 AT3G53610.2 91.220 205 18 0 11 215 11 215 3.94e-140 390
Msa1362420 AT3G53610.3 91.220 205 18 0 11 215 11 215 3.94e-140 390
Msa1362420 AT3G53610.1 91.220 205 18 0 11 215 11 215 3.94e-140 390
Msa1362420 AT5G03520.1 85.981 214 29 1 1 214 1 213 5.31e-130 365
Msa1362420 AT3G09900.1 84.186 215 33 1 1 214 1 215 1.41e-127 359
Msa1362420 AT5G03520.2 80.114 176 34 1 39 214 29 203 7.03e-102 293
Msa1362420 AT1G02130.1 59.903 207 73 3 10 214 3 201 3.18e-88 259
Msa1362420 AT4G17530.1 57.767 206 78 3 10 214 3 200 6.43e-83 245
Msa1362420 AT5G47200.1 57.767 206 78 3 10 214 3 200 2.47e-82 244
Msa1362420 AT3G11730.1 56.938 209 78 4 11 215 4 204 8.92e-81 240
Msa1362420 AT4G35860.1 49.524 210 99 4 12 215 3 211 1.03e-65 202
Msa1362420 AT4G17170.1 47.143 210 104 3 12 215 3 211 1.53e-62 194
Msa1362420 AT4G17160.1 47.573 206 103 3 12 215 3 205 3.52e-62 192
Msa1362420 AT1G09630.1 44.340 212 113 2 7 214 4 214 3.37e-59 186
Msa1362420 AT4G18430.1 44.444 216 107 3 7 214 5 215 2.26e-58 183
Msa1362420 AT1G16920.1 45.413 218 107 4 4 214 2 214 9.32e-58 182
Msa1362420 AT5G59150.1 42.202 218 110 3 7 214 4 215 3.39e-57 180
Msa1362420 AT1G07410.1 41.905 210 119 2 7 214 4 212 6.85e-57 179
Msa1362420 AT5G60860.1 43.379 219 111 3 4 214 2 215 9.96e-57 179
Msa1362420 AT3G46830.1 49.708 171 85 1 7 177 4 173 4.46e-56 177
Msa1362420 AT3G46830.2 49.708 171 85 1 7 177 4 173 4.46e-56 177
Msa1362420 AT3G15060.1 44.091 220 108 4 4 214 2 215 6.19e-56 177
Msa1362420 AT5G47520.1 44.601 213 102 5 13 214 12 219 2.96e-55 176
Msa1362420 AT5G45750.1 42.056 214 120 2 4 214 2 214 3.69e-55 175
Msa1362420 AT2G33870.1 43.119 218 110 4 7 215 5 217 1.08e-54 174
Msa1362420 AT4G39990.1 43.750 208 110 3 13 214 15 221 3.82e-54 173
Msa1362420 AT4G18800.1 42.453 212 120 2 4 214 2 212 6.66e-54 172
Msa1362420 AT1G28550.1 42.857 217 110 4 7 214 5 216 7.77e-54 172
Msa1362420 AT2G43130.1 40.686 204 118 2 13 214 10 212 9.13e-54 171
Msa1362420 AT1G06400.1 42.056 214 120 2 4 214 2 214 1.42e-53 171
Msa1362420 AT1G01200.1 47.337 169 89 0 13 181 26 194 6.44e-53 170
Msa1362420 AT3G07410.1 49.697 165 82 1 13 177 10 173 9.88e-53 169
Msa1362420 AT1G05810.1 41.063 207 116 3 13 214 10 215 3.40e-52 167
Msa1362420 AT1G43890.3 45.455 198 104 4 6 201 4 199 5.63e-52 167
Msa1362420 AT1G43890.1 45.455 198 104 4 6 201 4 199 5.63e-52 167
Msa1362420 AT1G43890.2 45.455 198 104 4 6 201 4 199 5.63e-52 167
Msa1362420 AT1G05810.2 41.063 207 116 3 13 214 56 261 1.07e-51 168
Msa1362420 AT5G47960.1 48.485 165 84 1 13 177 13 176 1.43e-51 166
Msa1362420 AT2G31680.1 47.273 165 86 1 13 177 10 173 1.45e-51 166
Msa1362420 AT1G18200.1 49.133 173 87 1 13 185 11 182 5.17e-51 165
Msa1362420 AT5G03530.2 45.024 211 105 6 8 214 6 209 7.18e-51 164
Msa1362420 AT5G03530.1 45.024 211 105 6 8 214 6 209 7.18e-51 164
Msa1362420 AT5G65270.1 40.758 211 115 4 13 214 15 224 7.97e-51 164
Msa1362420 AT1G73640.1 46.809 188 95 2 13 196 11 197 2.40e-50 163
Msa1362420 AT3G12160.1 40.670 209 117 2 13 215 13 220 4.43e-50 162
Msa1362420 AT3G54840.1 44.382 178 94 3 3 179 24 197 3.49e-48 157
Msa1362420 AT3G54840.2 46.154 169 86 3 3 170 24 188 1.30e-47 155
Msa1362420 AT3G54840.3 44.767 172 89 3 18 188 2 168 1.10e-46 152
Msa1362420 AT4G35860.2 47.879 165 79 4 57 215 2 165 7.90e-46 150
Msa1362420 AT3G09910.5 44.792 192 102 4 8 197 6 195 1.06e-44 148
Msa1362420 AT3G09910.4 44.792 192 102 4 8 197 6 195 1.06e-44 148
Msa1362420 AT4G19640.1 39.196 199 111 4 17 215 12 200 7.68e-43 143
Msa1362420 AT3G09910.3 47.126 174 88 4 8 179 6 177 5.28e-42 141
Msa1362420 AT3G09910.1 47.126 174 88 4 8 179 6 177 5.28e-42 141
Msa1362420 AT3G09910.2 47.126 174 88 4 8 179 6 177 5.28e-42 141
Msa1362420 AT2G44610.1 37.559 213 125 4 4 215 2 207 1.04e-41 140
Msa1362420 AT5G45130.1 37.000 200 114 4 17 215 12 200 1.20e-41 140
Msa1362420 AT5G10260.1 37.186 199 122 2 17 215 11 206 5.52e-41 139
Msa1362420 AT3G18820.1 42.135 178 93 4 5 176 2 175 5.60e-41 139
Msa1362420 AT4G39890.1 43.396 159 88 2 17 174 11 168 5.90e-41 139
Msa1362420 AT2G22290.1 36.869 198 122 2 17 214 11 205 1.28e-40 138
Msa1362420 AT5G45130.2 36.364 198 114 4 19 215 22 208 7.99e-40 135
Msa1362420 AT5G59150.2 39.881 168 85 3 57 214 3 164 1.13e-37 129
Msa1362420 AT1G52280.1 37.073 205 115 4 15 213 8 204 1.79e-37 130
Msa1362420 AT4G09720.1 39.378 193 101 4 15 191 8 200 1.83e-37 129
Msa1362420 AT1G49300.2 37.624 202 107 6 5 191 2 199 2.10e-37 129
Msa1362420 AT1G49300.1 37.624 202 107 6 5 191 2 199 2.10e-37 129
Msa1362420 AT5G64990.1 41.401 157 91 1 17 173 9 164 2.04e-36 127
Msa1362420 AT1G22740.1 40.719 167 93 3 15 175 8 174 4.60e-36 126
Msa1362420 AT3G16100.1 41.071 168 93 2 15 176 8 175 4.88e-36 126
Msa1362420 AT4G09720.4 38.889 198 100 5 15 191 8 205 1.36e-35 125
Msa1362420 AT2G21880.1 37.725 167 98 2 15 175 9 175 4.56e-35 124
Msa1362420 AT4G09720.3 37.255 204 101 5 15 191 8 211 3.78e-34 121
Msa1362420 AT5G64990.2 39.634 164 91 2 17 173 9 171 1.11e-33 120
Msa1362420 AT5G39620.1 38.462 169 92 3 16 175 6 171 1.22e-33 120
Msa1362420 AT4G19640.2 39.669 121 73 0 17 137 12 132 2.24e-30 110
Msa1362420 AT4G19640.3 39.669 121 73 0 17 137 12 132 1.26e-29 109
Msa1362420 AT4G09720.6 39.634 164 83 4 44 191 3 166 1.80e-28 105
Msa1362420 AT4G09720.5 39.634 164 83 4 44 191 3 166 1.80e-28 105
Msa1362420 AT4G09720.2 39.634 164 83 4 44 191 3 166 1.80e-28 105
Msa1362420 AT4G35020.1 35.928 167 94 6 15 170 6 170 1.23e-27 104
Msa1362420 AT4G35020.2 35.928 167 94 6 15 170 6 170 1.23e-27 104
Msa1362420 AT4G35020.3 35.928 167 94 6 15 170 6 170 1.23e-27 104
Msa1362420 AT2G21880.4 37.324 142 83 2 40 175 9 150 5.87e-27 102
Msa1362420 AT2G21880.3 37.324 142 83 2 40 175 9 150 5.87e-27 102
Msa1362420 AT5G20010.1 28.972 214 142 6 3 212 2 209 2.07e-26 101
Msa1362420 AT3G48040.1 32.934 167 99 5 15 170 8 172 2.32e-26 101
Msa1362420 AT2G44690.1 32.335 167 100 5 15 170 18 182 2.40e-26 101
Msa1362420 AT5G62880.1 31.844 179 109 5 15 182 8 184 4.78e-26 100
Msa1362420 AT5G45970.1 31.138 167 102 5 15 170 6 170 5.99e-26 100
Msa1362420 AT1G20090.1 34.132 167 97 6 15 170 5 169 2.09e-25 98.6
Msa1362420 AT3G51300.1 32.335 167 100 6 15 170 6 170 2.31e-25 98.2
Msa1362420 AT1G75840.1 33.533 167 98 6 15 170 6 170 2.56e-25 98.2
Msa1362420 AT2G21880.2 32.934 167 98 3 15 175 9 167 3.09e-25 98.2
Msa1362420 AT5G55190.1 28.037 214 142 6 3 209 2 210 6.18e-25 97.8
Msa1362420 AT2G17800.2 32.934 167 99 6 15 170 6 170 8.99e-25 96.7
Msa1362420 AT2G17800.1 32.934 167 99 6 15 170 6 170 8.99e-25 96.7
Msa1362420 AT5G55080.1 32.716 162 105 3 16 177 14 171 1.12e-24 97.1
Msa1362420 AT5G20020.1 30.286 175 117 4 3 177 2 171 1.24e-24 97.1
Msa1362420 AT4G28950.1 31.515 165 102 5 15 170 6 168 3.49e-24 95.5
Msa1362420 AT4G35950.1 32.335 167 100 6 15 170 6 170 7.98e-24 94.4
Msa1362420 AT3G48040.2 32.704 159 94 5 15 162 8 164 1.02e-23 93.6
Msa1362420 AT5G62880.2 32.317 164 98 5 15 167 8 169 8.44e-23 91.7
Msa1362420 AT4G35020.4 37.069 116 70 3 15 129 6 119 1.20e-19 82.0
Msa1362420 AT4G35020.5 37.069 116 70 3 15 129 6 119 1.20e-19 82.0
Msa1362420 AT5G46025.1 35.294 102 64 2 77 177 6 106 2.91e-15 69.7
Msa1362420 AT3G51290.2 30.769 143 86 6 44 175 636 776 3.28e-13 68.6
Msa1362420 AT5G37680.1 27.439 164 100 5 16 170 20 173 8.59e-12 62.0
Msa1362420 AT2G15310.1 28.058 139 88 6 16 153 18 145 1.78e-11 61.6

Find 76 sgRNAs with CRISPR-Local

Find 220 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACGCATTAAGTTGCAAATT+TGG 0.124150 tig0017836:+3206 Msa1362420:CDS
CTTCTTTCTGTTCAGATATT+AGG 0.164910 tig0017836:+3760 Msa1362420:intron
TAACGGAAAGAACCAGTATT+TGG 0.222249 tig0017836:+4614 Msa1362420:exon
CTCATCAAGCTTCTTCTTAT+CGG 0.235582 tig0017836:+1643 Msa1362420:CDS
GTTGGTTAATCTTGATACTC+TGG 0.323408 tig0017836:-4538 None:intergenic
CATTGGCTGCCTGGTCTTGT+TGG 0.332079 tig0017836:-4556 None:intergenic
ACGCATTAAGTTGCAAATTT+GGG 0.344668 tig0017836:+3207 Msa1362420:CDS
AATCGGCTTGCTGCGGTTAA+CGG 0.352175 tig0017836:+4597 Msa1362420:CDS
ACGAATAGCTTCTAACTATT+CGG 0.354488 tig0017836:+1528 Msa1362420:five_prime_UTR
TGTGGGAAACAAGGCTGATA+TGG 0.357144 tig0017836:+3836 Msa1362420:CDS
TTGGTTAATCTTGATACTCT+GGG 0.358486 tig0017836:-4537 None:intergenic
TGGAGCCATGGGTATCTTGC+TGG 0.359100 tig0017836:+3432 Msa1362420:CDS
ATATCTTGACAAATAGATTA+TGG 0.365179 tig0017836:+4826 Msa1362420:three_prime_UTR
CCTGACCACCATTGGCTGCC+TGG 0.367231 tig0017836:-4565 None:intergenic
CCGATCTCTGTGCTGTGCTT+TGG 0.379544 tig0017836:+1560 Msa1362420:five_prime_UTR
ATCAGCAAGAGCTTGACCTT+TGG 0.383335 tig0017836:-4087 None:intergenic
CAAGCTCTTGCTGATGAGTA+TGG 0.383437 tig0017836:+4095 Msa1362420:CDS
ATAAGAACCATTGAACTTGA+TGG 0.385351 tig0017836:+3181 Msa1362420:CDS
GAAGAGGGTGGGGCCGAATC+TGG 0.396944 tig0017836:+1330 Msa1362420:five_prime_UTR
TAATCGGCACGAGCTCTTGC+AGG 0.397197 tig0017836:-1613 None:intergenic
TCTGTTCAGATATTAGGAAT+TGG 0.400880 tig0017836:+3766 Msa1362420:intron
CTGATATGGATGAAAGTAAA+CGG 0.401383 tig0017836:+3850 Msa1362420:CDS
CCAGGCAGCCAATGGTGGTC+AGG 0.405180 tig0017836:+4565 Msa1362420:CDS
AACGGAAAGAACCAGTATTT+GGG 0.406450 tig0017836:+4615 Msa1362420:exon
TAACATTAGCACCCAAATAC+TGG 0.409918 tig0017836:-4626 None:intergenic
AATTTGGGACACAGCTGGTC+AGG 0.423871 tig0017836:+3222 Msa1362420:CDS
AGTTAGAAGCTATTCGTTGT+TGG 0.433064 tig0017836:-1522 None:intergenic
CCCAATGGTGGTGATAAAAC+TGG 0.440887 tig0017836:-2679 None:intergenic
CTTGATGAGGTAATCGTAAT+CGG 0.447072 tig0017836:-1629 None:intergenic
AGCAAGAGCTTGACCTTTGG+AGG 0.448218 tig0017836:-4084 None:intergenic
GCGTTTGCCATCAAGTTCAA+TGG 0.456159 tig0017836:-3188 None:intergenic
GGGCCGAATCTGGTGTGTGC+AGG 0.458815 tig0017836:+1340 Msa1362420:five_prime_UTR
AATGTAAACAAGATACTTGT+GGG 0.475156 tig0017836:+3819 Msa1362420:CDS
ACTCCTGCACACACCAGATT+CGG 0.478127 tig0017836:-1343 None:intergenic
TCGTTGTTGGCGACATGGAA+TGG 0.479080 tig0017836:-1509 None:intergenic
AGCTTATTATCGTGGAGCCA+TGG 0.483620 tig0017836:+3420 Msa1362420:intron
TGTGAAGTTGGAAGATAAAG+AGG 0.496857 tig0017836:-4688 None:intergenic
TTACAATTATGGATGCTGAA+TGG 0.498273 tig0017836:+1278 None:intergenic
CACAGCACAGAGATCGGAAT+CGG 0.499162 tig0017836:-1554 None:intergenic
TGATATGGATGAAAGTAAAC+GGG 0.500423 tig0017836:+3851 Msa1362420:CDS
TATTCTGATGACAATATTAG+TGG 0.503959 tig0017836:+4647 Msa1362420:three_prime_UTR
ACATACCTGTAGTAATAGTT+CGG 0.505948 tig0017836:-3252 None:intergenic
TAAAACAAGACATGTGAAGT+TGG 0.515497 tig0017836:-4700 None:intergenic
CAAGATACTTGTGGGAAACA+AGG 0.517167 tig0017836:+3827 Msa1362420:CDS
TTGTGCAGCCTGACCACCAT+TGG 0.522584 tig0017836:-4573 None:intergenic
TTGCAAATTTGGGACACAGC+TGG 0.522901 tig0017836:+3217 Msa1362420:CDS
GCTATTCGTTGTTGGCGACA+TGG 0.535062 tig0017836:-1514 None:intergenic
CCAAAGCACAGCACAGAGAT+CGG 0.546259 tig0017836:-1560 None:intergenic
CTTCTTCTTATCGGCGACAG+TGG 0.546770 tig0017836:+1652 Msa1362420:CDS
GTAGTATATTGAAGAGGGTG+GGG 0.550437 tig0017836:+1320 Msa1362420:five_prime_UTR
GCTTATTATCGTGGAGCCAT+GGG 0.550907 tig0017836:+3421 Msa1362420:intron
CAATGTAAACAAGATACTTG+TGG 0.552374 tig0017836:+3818 Msa1362420:CDS
GGTAGTATATTGAAGAGGGT+GGG 0.555056 tig0017836:+1319 Msa1362420:five_prime_UTR
TCTGTTGCAGCTTATTATCG+TGG 0.558222 tig0017836:+3412 Msa1362420:intron
AGATTCCGAACTATTACTAC+AGG 0.559019 tig0017836:+3247 Msa1362420:CDS
AGAGCTTGACCTTTGGAGGT+AGG 0.570506 tig0017836:-4080 None:intergenic
CAAGATTAACCAACAAGACC+AGG 0.573376 tig0017836:+4547 Msa1362420:CDS
CACAGGTAGTATATTGAAGA+GGG 0.585743 tig0017836:+1315 Msa1362420:five_prime_UTR
ACACAGGTAGTATATTGAAG+AGG 0.596277 tig0017836:+1314 Msa1362420:five_prime_UTR
AGGTAGTATATTGAAGAGGG+TGG 0.601881 tig0017836:+1318 Msa1362420:five_prime_UTR
ATTCTGATGACAATATTAGT+GGG 0.606836 tig0017836:+4648 Msa1362420:three_prime_UTR
CAACAAGACCAGGCAGCCAA+TGG 0.612044 tig0017836:+4557 Msa1362420:CDS
TACAAATACTAACCCAATGG+TGG 0.615885 tig0017836:-2691 None:intergenic
AGACACTGTTTCTAGTACTG+AGG 0.616300 tig0017836:+4288 Msa1362420:CDS
TGGTCCAATAAAAGAGACAC+AGG 0.620251 tig0017836:+1298 Msa1362420:five_prime_UTR
TAGGCTGTACCTACCTCCAA+AGG 0.624971 tig0017836:+4071 Msa1362420:intron
CTCAACTATTTGTAGGTGTG+GGG 0.631205 tig0017836:+2613 Msa1362420:intron
TAGCAAGAGATATCAAGCAA+AGG 0.641515 tig0017836:+4260 Msa1362420:CDS
GGACTGGTATACTTTGCACG+TGG 0.648609 tig0017836:-4856 None:intergenic
GGTGATAAAACTGGTTGTGA+AGG 0.649377 tig0017836:-2670 None:intergenic
GTGCAGGAGTATGAAAGTGT+TGG 0.654728 tig0017836:+1356 Msa1362420:five_prime_UTR
TGGTTAATCTTGATACTCTG+GGG 0.656186 tig0017836:-4536 None:intergenic
GTTGGCGACATGGAATGGAA+TGG 0.657982 tig0017836:-1504 None:intergenic
CGATAAGAAGAAGCTTGATG+AGG 0.673490 tig0017836:-1642 None:intergenic
CAAGACCAGGCAGCCAATGG+TGG 0.679968 tig0017836:+4560 Msa1362420:CDS
GTAAACCAGCAAGATACCCA+TGG 0.687226 tig0017836:-3437 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATTATTGTTAACAAATTT+TGG - tig0017836:1850-1869 None:intergenic 10.0%
!! CATTAAATTGATGTAAAATT+GGG - tig0017836:1781-1800 None:intergenic 15.0%
!! ACATTAAATTGATGTAAAAT+TGG - tig0017836:1782-1801 None:intergenic 15.0%
!!! TTAATAAAATTTGTTGAGTA+TGG + tig0017836:1876-1895 Msa1362420:intron 15.0%
!! AATCTTATTATAAAAATGCA+TGG + tig0017836:3142-3161 Msa1362420:intron 15.0%
!! ATTAGAAAGACAAAAACAAA+AGG + tig0017836:2048-2067 Msa1362420:intron 20.0%
!! CATAAGAATAAGAAAAATAG+CGG - tig0017836:2329-2348 None:intergenic 20.0%
!! TTCTTATGGAATGAAAATTT+AGG + tig0017836:2341-2360 Msa1362420:intron 20.0%
!! TCTTATGGAATGAAAATTTA+GGG + tig0017836:2342-2361 Msa1362420:intron 20.0%
!!! GAAAAGTACGTAAAAATAAA+AGG - tig0017836:2590-2609 None:intergenic 20.0%
!! AATATAGATAGATATATGTC+TGG - tig0017836:3108-3127 None:intergenic 20.0%
!! AAGAAAAAGAAATAATAGAG+AGG - tig0017836:4391-4410 None:intergenic 20.0%
!!! AATGATGATATTTTCTTCTA+TGG + tig0017836:4505-4524 Msa1362420:intron 20.0%
!!! TAAGTTTTTTCTCATGTAAT+TGG + tig0017836:4736-4755 Msa1362420:three_prime_UTR 20.0%
!! ATATCTTGACAAATAGATTA+TGG + tig0017836:4826-4845 Msa1362420:three_prime_UTR 20.0%
! AATATATCATCTCTATTACC+CGG - tig0017836:1973-1992 None:intergenic 25.0%
! TTAGTGATAACAAAGAAAAG+AGG + tig0017836:1999-2018 Msa1362420:intron 25.0%
! TGTGATATTGAGAAATTTGA+AGG - tig0017836:2259-2278 None:intergenic 25.0%
! TCAAATTTCTCAATATCACA+AGG + tig0017836:2259-2278 Msa1362420:intron 25.0%
!!! CATAGTAGAATTTTGACTAA+CGG - tig0017836:2295-2314 None:intergenic 25.0%
!!! CGCTATTTTTCTTATTCTTA+TGG + tig0017836:2327-2346 Msa1362420:intron 25.0%
!! ACCTACCAATTTCATAATTT+TGG + tig0017836:2430-2449 Msa1362420:intron 25.0%
! TCCAAAATTATGAAATTGGT+AGG - tig0017836:2434-2453 None:intergenic 25.0%
! CTAGTCCAAAATTATGAAAT+TGG - tig0017836:2438-2457 None:intergenic 25.0%
! ATTAACTCAAACAAGATACA+AGG - tig0017836:2541-2560 None:intergenic 25.0%
! TATTACAAATACTAACCCAA+TGG - tig0017836:2697-2716 None:intergenic 25.0%
! TTCTTATTGGTCAAAAACAA+TGG + tig0017836:2776-2795 Msa1362420:intron 25.0%
!! TGATATTTGTACATCCATTT+TGG - tig0017836:2873-2892 None:intergenic 25.0%
! ATTTAGAAATACAGCAAACT+TGG + tig0017836:2965-2984 Msa1362420:intron 25.0%
! TTTAGAAATACAGCAAACTT+GGG + tig0017836:2966-2985 Msa1362420:intron 25.0%
! ATATATCAGACAAACTCTAT+AGG - tig0017836:2992-3011 None:intergenic 25.0%
! TGTATAAGATGAAGGAAATT+CGG - tig0017836:3066-3085 None:intergenic 25.0%
! TACTTATGTGTATAAGATGA+AGG - tig0017836:3074-3093 None:intergenic 25.0%
!! TCAATTGATAGTTGTTCATT+TGG + tig0017836:3305-3324 Msa1362420:intron 25.0%
! TTTAAGCAGAAATAAGATCA+GGG - tig0017836:3503-3522 None:intergenic 25.0%
! AATGTAAACAAGATACTTGT+GGG + tig0017836:3819-3838 Msa1362420:CDS 25.0%
! ATGTCAAGTAAAAGTAGAAA+GGG - tig0017836:3893-3912 None:intergenic 25.0%
! TTTCCTTCAATACAAACATA+AGG + tig0017836:4034-4053 Msa1362420:intron 25.0%
! TTAGCAGAATAAGTAATTGT+TGG - tig0017836:4431-4450 None:intergenic 25.0%
! TATTCTGATGACAATATTAG+TGG + tig0017836:4647-4666 Msa1362420:three_prime_UTR 25.0%
! ATTCTGATGACAATATTAGT+GGG + tig0017836:4648-4667 Msa1362420:three_prime_UTR 25.0%
ACGAATAGCTTCTAACTATT+CGG + tig0017836:1528-1547 Msa1362420:five_prime_UTR 30.0%
AAGTGAATAACATGAAGATC+TGG - tig0017836:1707-1726 None:intergenic 30.0%
!! TTGGTCTTAAATTTGATGTG+TGG - tig0017836:1831-1850 None:intergenic 30.0%
ATATATCATCTCTATTACCC+GGG - tig0017836:1972-1991 None:intergenic 30.0%
CGATTCAGAGTATAAAAAGT+TGG + tig0017836:2152-2171 Msa1362420:intron 30.0%
GTCAAAATTCTACTATGCTA+TGG + tig0017836:2298-2317 Msa1362420:intron 30.0%
TTTCTGACTCAACTATTTGT+AGG + tig0017836:2606-2625 Msa1362420:intron 30.0%
!! AACTACTTTTGTACTACTTC+TGG + tig0017836:2735-2754 Msa1362420:intron 30.0%
!! ACTACTTTTGTACTACTTCT+GGG + tig0017836:2736-2755 Msa1362420:intron 30.0%
AAAACAATGGAGAGAGAAAA+AGG + tig0017836:2789-2808 Msa1362420:intron 30.0%
GTACAAAAGTTGTACCAAAA+TGG + tig0017836:2856-2875 Msa1362420:intron 30.0%
TATAAACACTTTCTCATCGT+TGG + tig0017836:3038-3057 Msa1362420:intron 30.0%
ATAAGAACCATTGAACTTGA+TGG + tig0017836:3181-3200 Msa1362420:CDS 30.0%
! AACGCATTAAGTTGCAAATT+TGG + tig0017836:3206-3225 Msa1362420:CDS 30.0%
! ACGCATTAAGTTGCAAATTT+GGG + tig0017836:3207-3226 Msa1362420:CDS 30.0%
ACATACCTGTAGTAATAGTT+CGG - tig0017836:3255-3274 None:intergenic 30.0%
CTTTAAGCAGAAATAAGATC+AGG - tig0017836:3504-3523 None:intergenic 30.0%
CACTAATGTCTGAAAATTGT+AGG + tig0017836:3551-3570 Msa1362420:intron 30.0%
AAACAGATCAATTGATTGTC+TGG - tig0017836:3672-3691 None:intergenic 30.0%
CTTCTTTCTGTTCAGATATT+AGG + tig0017836:3760-3779 Msa1362420:intron 30.0%
TCTGTTCAGATATTAGGAAT+TGG + tig0017836:3766-3785 Msa1362420:intron 30.0%
CAATGTAAACAAGATACTTG+TGG + tig0017836:3818-3837 Msa1362420:CDS 30.0%
CTGATATGGATGAAAGTAAA+CGG + tig0017836:3850-3869 Msa1362420:CDS 30.0%
TGATATGGATGAAAGTAAAC+GGG + tig0017836:3851-3870 Msa1362420:CDS 30.0%
GATGTCAAGTAAAAGTAGAA+AGG - tig0017836:3894-3913 None:intergenic 30.0%
ACACCTTATGTTTGTATTGA+AGG - tig0017836:4040-4059 None:intergenic 30.0%
TGCAAAAACAAACATGAATG+TGG + tig0017836:4219-4238 Msa1362420:CDS 30.0%
AAAAACAAACATGAATGTGG+AGG + tig0017836:4222-4241 Msa1362420:CDS 30.0%
AGGACTACAAAAATGAAGAT+AGG - tig0017836:4331-4350 None:intergenic 30.0%
! TTTGTTGCTTCTTTCTTGTT+TGG + tig0017836:4472-4491 Msa1362420:intron 30.0%
! GATGATATTTTCTTCTATGG+TGG + tig0017836:4508-4527 Msa1362420:intron 30.0%
TTGGTTAATCTTGATACTCT+GGG - tig0017836:4540-4559 None:intergenic 30.0%
TAAAACAAGACATGTGAAGT+TGG - tig0017836:4703-4722 None:intergenic 30.0%
!!! GTTTTTTCTCATGTAATTGG+TGG + tig0017836:4739-4758 Msa1362420:three_prime_UTR 30.0%
! ACTACCTGTGTCTCTTTTAT+TGG - tig0017836:1305-1324 None:intergenic 35.0%
ACACAGGTAGTATATTGAAG+AGG + tig0017836:1314-1333 Msa1362420:five_prime_UTR 35.0%
CACAGGTAGTATATTGAAGA+GGG + tig0017836:1315-1334 Msa1362420:five_prime_UTR 35.0%
AGTTAGAAGCTATTCGTTGT+TGG - tig0017836:1525-1544 None:intergenic 35.0%
CTTGATGAGGTAATCGTAAT+CGG - tig0017836:1632-1651 None:intergenic 35.0%
CTCATCAAGCTTCTTCTTAT+CGG + tig0017836:1643-1662 Msa1362420:CDS 35.0%
! ATTTGTTGAGTATGGCTTTG+TGG + tig0017836:1884-1903 Msa1362420:intron 35.0%
AAGAAAAGAGGAGATGTTGT+TGG + tig0017836:2011-2030 Msa1362420:intron 35.0%
GGAAAAAGATGTTTACTCCT+TGG + tig0017836:2069-2088 Msa1362420:intron 35.0%
AGATGTTTACTCCTTGGAAA+TGG + tig0017836:2075-2094 Msa1362420:intron 35.0%
CATGGTTCAAGTAGTTGTAA+CGG - tig0017836:2203-2222 None:intergenic 35.0%
GTTACAACTACTTGAACCAT+GGG + tig0017836:2202-2221 Msa1362420:intron 35.0%
GAAATTTGAAGGAAAAGCCA+CGG - tig0017836:2248-2267 None:intergenic 35.0%
CTATTTGTGCCAATCACAAT+TGG + tig0017836:2494-2513 Msa1362420:intron 35.0%
ACTCAACTATTTGTAGGTGT+GGG + tig0017836:2612-2631 Msa1362420:intron 35.0%
!!! TTGCTTTTGAGGTTTTCTGA+TGG + tig0017836:2645-2664 Msa1362420:CDS 35.0%
TACAAATACTAACCCAATGG+TGG - tig0017836:2694-2713 None:intergenic 35.0%
CCAATAAGAAGAGAACAACA+AGG - tig0017836:2766-2785 None:intergenic 35.0%
!! CCTTGTTGTTCTCTTCTTAT+TGG + tig0017836:2763-2782 Msa1362420:intron 35.0%
AGATTCCGAACTATTACTAC+AGG + tig0017836:3247-3266 Msa1362420:CDS 35.0%
ACTGGGAACTCGTAATTAAT+AGG + tig0017836:3336-3355 Msa1362420:intron 35.0%
TTAAGACATGTTCCTTCAAC+AGG - tig0017836:3382-3401 None:intergenic 35.0%
AAATAAGATCAGGGAAAGGA+GGG - tig0017836:3494-3513 None:intergenic 35.0%
AAAAGGAACAAGAATGGATG+GGG - tig0017836:3615-3634 None:intergenic 35.0%
CAAAAGGAACAAGAATGGAT+GGG - tig0017836:3616-3635 None:intergenic 35.0%
TCAAAAGGAACAAGAATGGA+TGG - tig0017836:3617-3636 None:intergenic 35.0%
AAGGCAAGCAGAATAAACAA+TGG - tig0017836:3727-3746 None:intergenic 35.0%
TACTTGACATCTTAGCTGTT+TGG + tig0017836:3903-3922 Msa1362420:intron 35.0%
ACTTGACATCTTAGCTGTTT+GGG + tig0017836:3904-3923 Msa1362420:intron 35.0%
TCCGTAAGTAAATGTGGTAT+GGG - tig0017836:3976-3995 None:intergenic 35.0%
ATCCGTAAGTAAATGTGGTA+TGG - tig0017836:3977-3996 None:intergenic 35.0%
!! TAAGGTGTTCGTTTTTCTCT+AGG + tig0017836:4052-4071 Msa1362420:intron 35.0%
TAGCAAGAGATATCAAGCAA+AGG + tig0017836:4260-4279 Msa1362420:CDS 35.0%
AAGATAGGAAAGAGTCAACA+AGG - tig0017836:4316-4335 None:intergenic 35.0%
! ATTTTTGTAGTCCTCAGAAG+TGG + tig0017836:4337-4356 Msa1362420:intron 35.0%
GAAATAATAGAGAGGAGAGA+AGG - tig0017836:4383-4402 None:intergenic 35.0%
TGGTTAATCTTGATACTCTG+GGG - tig0017836:4539-4558 None:intergenic 35.0%
GTTGGTTAATCTTGATACTC+TGG - tig0017836:4541-4560 None:intergenic 35.0%
TAACGGAAAGAACCAGTATT+TGG + tig0017836:4614-4633 Msa1362420:exon 35.0%
AACGGAAAGAACCAGTATTT+GGG + tig0017836:4615-4634 Msa1362420:exon 35.0%
TAACATTAGCACCCAAATAC+TGG - tig0017836:4629-4648 None:intergenic 35.0%
TGTGAAGTTGGAAGATAAAG+AGG - tig0017836:4691-4710 None:intergenic 35.0%
TGGTCCAATAAAAGAGACAC+AGG + tig0017836:1298-1317 Msa1362420:five_prime_UTR 40.0%
AGGTAGTATATTGAAGAGGG+TGG + tig0017836:1318-1337 Msa1362420:five_prime_UTR 40.0%
GGTAGTATATTGAAGAGGGT+GGG + tig0017836:1319-1338 Msa1362420:five_prime_UTR 40.0%
GTAGTATATTGAAGAGGGTG+GGG + tig0017836:1320-1339 Msa1362420:five_prime_UTR 40.0%
!!! GAGTGTTGAATTTTGAGCGA+TGG + tig0017836:1582-1601 Msa1362420:exon 40.0%
CGATAAGAAGAAGCTTGATG+AGG - tig0017836:1645-1664 None:intergenic 40.0%
GAAAGTAGATGACCATAACC+CGG + tig0017836:1951-1970 Msa1362420:intron 40.0%
AAAGTAGATGACCATAACCC+GGG + tig0017836:1952-1971 Msa1362420:intron 40.0%
GAGATGTTGTTGGAAAAGAG+AGG + tig0017836:2021-2040 Msa1362420:intron 40.0%
CCAGTAATCTTCCATTTCCA+AGG - tig0017836:2089-2108 None:intergenic 40.0%
CCTTGGAAATGGAAGATTAC+TGG + tig0017836:2086-2105 Msa1362420:intron 40.0%
GGAAGATTACTGGAGAATAG+AGG + tig0017836:2096-2115 Msa1362420:intron 40.0%
AAGTTGGAGTCTTTCATACG+AGG + tig0017836:2168-2187 Msa1362420:intron 40.0%
AGTAGTTGTAACGGTAACAG+TGG - tig0017836:2194-2213 None:intergenic 40.0%
CGTTACAACTACTTGAACCA+TGG + tig0017836:2201-2220 Msa1362420:intron 40.0%
TTGTAAATCCTCAACGAGGT+TGG - tig0017836:2395-2414 None:intergenic 40.0%
ACCTCGTTGAGGATTTACAA+TGG + tig0017836:2395-2414 Msa1362420:intron 40.0%
TCCATTGTAAATCCTCAACG+AGG - tig0017836:2399-2418 None:intergenic 40.0%
ACTAGATCTCATATCACAGC+TGG + tig0017836:2453-2472 Msa1362420:intron 40.0%
GACTCAACTATTTGTAGGTG+TGG + tig0017836:2611-2630 Msa1362420:intron 40.0%
CTCAACTATTTGTAGGTGTG+GGG + tig0017836:2613-2632 Msa1362420:intron 40.0%
!! GGAAGAGTTGTTTGCTTTTG+AGG + tig0017836:2634-2653 Msa1362420:CDS 40.0%
GGTGATAAAACTGGTTGTGA+AGG - tig0017836:2673-2692 None:intergenic 40.0%
!! ACCAGTTTTATCACCACCAT+TGG + tig0017836:2678-2697 Msa1362420:CDS 40.0%
!! CCAGTTTTATCACCACCATT+GGG + tig0017836:2679-2698 Msa1362420:CDS 40.0%
TTCATTTGGTCCCATACACT+GGG + tig0017836:3319-3338 Msa1362420:intron 40.0%
ATTACGAGTTCCCAGTGTAT+GGG - tig0017836:3332-3351 None:intergenic 40.0%
AATTACGAGTTCCCAGTGTA+TGG - tig0017836:3333-3352 None:intergenic 40.0%
TTTACCCACATTCCTGTTGA+AGG + tig0017836:3367-3386 Msa1362420:intron 40.0%
TGTTCCTTCAACAGGAATGT+GGG - tig0017836:3374-3393 None:intergenic 40.0%
ATGTTCCTTCAACAGGAATG+TGG - tig0017836:3375-3394 None:intergenic 40.0%
TCTGTTGCAGCTTATTATCG+TGG + tig0017836:3412-3431 Msa1362420:intron 40.0%
GAAATAAGATCAGGGAAAGG+AGG - tig0017836:3495-3514 None:intergenic 40.0%
GCAGAAATAAGATCAGGGAA+AGG - tig0017836:3498-3517 None:intergenic 40.0%
GAATGGATGGGGAAATAAGA+AGG - tig0017836:3604-3623 None:intergenic 40.0%
GAGGTCAAAAGGAACAAGAA+TGG - tig0017836:3621-3640 None:intergenic 40.0%
!! GGAGAGTATTAGAGGTCAAA+AGG - tig0017836:3632-3651 None:intergenic 40.0%
! CTGGCTAGTTAAATGTGAGT+CGG - tig0017836:3653-3672 None:intergenic 40.0%
! AAGAAGCGTGCTACATCAAA+AGG - tig0017836:3746-3765 None:intergenic 40.0%
CAAGATACTTGTGGGAAACA+AGG + tig0017836:3827-3846 Msa1362420:CDS 40.0%
CTTGACATCTTAGCTGTTTG+GGG + tig0017836:3905-3924 Msa1362420:intron 40.0%
GCCCATACCACATTTACTTA+CGG + tig0017836:3972-3991 Msa1362420:intron 40.0%
CTCAGATCCGTAAGTAAATG+TGG - tig0017836:3982-4001 None:intergenic 40.0%
!! AGACACTGTTTCTAGTACTG+AGG + tig0017836:4288-4307 Msa1362420:CDS 40.0%
TGCATAAACTTCCACTTCTG+AGG - tig0017836:4351-4370 None:intergenic 40.0%
CAAGATTAACCAACAAGACC+AGG + tig0017836:4547-4566 Msa1362420:CDS 40.0%
! GTGCAGGAGTATGAAAGTGT+TGG + tig0017836:1356-1375 Msa1362420:five_prime_UTR 45.0%
CATCTCTATTACCCGGGTTA+TGG - tig0017836:1966-1985 None:intergenic 45.0%
! AAATCCTCAACGAGGTTGGT+GGG - tig0017836:2391-2410 None:intergenic 45.0%
TAAATCCTCAACGAGGTTGG+TGG - tig0017836:2392-2411 None:intergenic 45.0%
AGCGGTGAACCAATTGTGAT+TGG - tig0017836:2506-2525 None:intergenic 45.0%
ACAAGGCCATCAAATTGCAG+CGG - tig0017836:2524-2543 None:intergenic 45.0%
! CCCAATGGTGGTGATAAAAC+TGG - tig0017836:2682-2701 None:intergenic 45.0%
GCGTTTGCCATCAAGTTCAA+TGG - tig0017836:3191-3210 None:intergenic 45.0%
! TTGCAAATTTGGGACACAGC+TGG + tig0017836:3217-3236 Msa1362420:CDS 45.0%
GTTCATTTGGTCCCATACAC+TGG + tig0017836:3318-3337 Msa1362420:intron 45.0%
AGCTTATTATCGTGGAGCCA+TGG + tig0017836:3420-3439 Msa1362420:intron 45.0%
GCTTATTATCGTGGAGCCAT+GGG + tig0017836:3421-3440 Msa1362420:intron 45.0%
GTAAACCAGCAAGATACCCA+TGG - tig0017836:3440-3459 None:intergenic 45.0%
!! TGTGAGTCGGAGAGTATTAG+AGG - tig0017836:3640-3659 None:intergenic 45.0%
TGTGGGAAACAAGGCTGATA+TGG + tig0017836:3836-3855 Msa1362420:CDS 45.0%
! TCTTAGCTGTTTGGGGTATG+AGG + tig0017836:3912-3931 Msa1362420:intron 45.0%
ATCAGCAAGAGCTTGACCTT+TGG - tig0017836:4090-4109 None:intergenic 45.0%
CAAGCTCTTGCTGATGAGTA+TGG + tig0017836:4095-4114 Msa1362420:CDS 45.0%
TGGTCAGGCTGCACAAAAAT+CGG + tig0017836:4580-4599 Msa1362420:CDS 45.0%
ACTCCTGCACACACCAGATT+CGG - tig0017836:1346-1365 None:intergenic 50.0%
ATTGCGCAGAGAGAGAGAGA+GGG + tig0017836:1403-1422 Msa1362420:five_prime_UTR 50.0%
GTTGGCGACATGGAATGGAA+TGG - tig0017836:1507-1526 None:intergenic 50.0%
TCGTTGTTGGCGACATGGAA+TGG - tig0017836:1512-1531 None:intergenic 50.0%
GCTATTCGTTGTTGGCGACA+TGG - tig0017836:1517-1536 None:intergenic 50.0%
CACAGCACAGAGATCGGAAT+CGG - tig0017836:1557-1576 None:intergenic 50.0%
CCAAAGCACAGCACAGAGAT+CGG - tig0017836:1563-1582 None:intergenic 50.0%
CTTCTTCTTATCGGCGACAG+TGG + tig0017836:1652-1671 Msa1362420:CDS 50.0%
!!! AACGAGGTTGGTGGGTCTTT+TGG - tig0017836:2383-2402 None:intergenic 50.0%
GGTTCACCGCTGCAATTTGA+TGG + tig0017836:2515-2534 Msa1362420:intron 50.0%
! AATTTGGGACACAGCTGGTC+AGG + tig0017836:3222-3241 Msa1362420:CDS 50.0%
AAACGGGTATGTCCATCTCG+AGG + tig0017836:3867-3886 Msa1362420:intron 50.0%
AAGTAGAAAGGGCCTCGAGA+TGG - tig0017836:3882-3901 None:intergenic 50.0%
TAGGCTGTACCTACCTCCAA+AGG + tig0017836:4071-4090 Msa1362420:intron 50.0%
! AGAGCTTGACCTTTGGAGGT+AGG - tig0017836:4083-4102 None:intergenic 50.0%
AGCAAGAGCTTGACCTTTGG+AGG - tig0017836:4087-4106 None:intergenic 50.0%
!! GCACAAAAATCGGCTTGCTG+CGG + tig0017836:4590-4609 Msa1362420:CDS 50.0%
!! AATCGGCTTGCTGCGGTTAA+CGG + tig0017836:4597-4616 Msa1362420:CDS 50.0%
! GGACTGGTATACTTTGCACG+TGG - tig0017836:4859-4878 None:intergenic 50.0%
CATTGCGCAGAGAGAGAGAG+AGG + tig0017836:1402-1421 Msa1362420:five_prime_UTR 55.0%
TTGCGCAGAGAGAGAGAGAG+GGG + tig0017836:1404-1423 Msa1362420:five_prime_UTR 55.0%
CCGATCTCTGTGCTGTGCTT+TGG + tig0017836:1560-1579 Msa1362420:five_prime_UTR 55.0%
TAATCGGCACGAGCTCTTGC+AGG - tig0017836:1616-1635 None:intergenic 55.0%
! AACCATGGGTGCCACGAGAA+TGG + tig0017836:2216-2235 Msa1362420:intron 55.0%
!!! GGTTGGTGGGTCTTTTGGCA+TGG - tig0017836:2378-2397 None:intergenic 55.0%
AAGACCCACCAACCTCGTTG+AGG + tig0017836:2384-2403 Msa1362420:intron 55.0%
TGGAGCCATGGGTATCTTGC+TGG + tig0017836:3432-3451 Msa1362420:CDS 55.0%
!! CATTGGCTGCCTGGTCTTGT+TGG - tig0017836:4559-4578 None:intergenic 55.0%
CAACAAGACCAGGCAGCCAA+TGG + tig0017836:4557-4576 Msa1362420:CDS 55.0%
TTGTGCAGCCTGACCACCAT+TGG - tig0017836:4576-4595 None:intergenic 55.0%
TGCCATTCTCGTGGCACCCA+TGG - tig0017836:2221-2240 None:intergenic 60.0%
CACGGCAACTGCCATTCTCG+TGG - tig0017836:2230-2249 None:intergenic 60.0%
CACGAGAATGGCAGTTGCCG+TGG + tig0017836:2228-2247 Msa1362420:intron 60.0%
CAAGACCAGGCAGCCAATGG+TGG + tig0017836:4560-4579 Msa1362420:CDS 60.0%
GAAGAGGGTGGGGCCGAATC+TGG + tig0017836:1330-1349 Msa1362420:five_prime_UTR 65.0%
GGGCCGAATCTGGTGTGTGC+AGG + tig0017836:1340-1359 Msa1362420:five_prime_UTR 65.0%
! CCTGACCACCATTGGCTGCC+TGG - tig0017836:4568-4587 None:intergenic 65.0%
CCAGGCAGCCAATGGTGGTC+AGG + tig0017836:4565-4584 Msa1362420:CDS 65.0%
Chromosome Type Strat End Strand Name
tig0017836 gene 1281 4880 1281 ID=Msa1362420;Name=Msa1362420
tig0017836 mRNA 1281 4880 1281 ID=Msa1362420-mRNA-1;Parent=Msa1362420;Name=Msa1362420-mRNA-1;_AED=0.07;_eAED=0.07;_QI=320|1|1|1|1|1|8|264|215
tig0017836 exon 1281 1673 1281 ID=Msa1362420-mRNA-1:exon:12999;Parent=Msa1362420-mRNA-1
tig0017836 exon 2628 2700 2628 ID=Msa1362420-mRNA-1:exon:13000;Parent=Msa1362420-mRNA-1
tig0017836 exon 3168 3268 3168 ID=Msa1362420-mRNA-1:exon:13001;Parent=Msa1362420-mRNA-1
tig0017836 exon 3422 3487 3422 ID=Msa1362420-mRNA-1:exon:13002;Parent=Msa1362420-mRNA-1
tig0017836 exon 3775 3872 3775 ID=Msa1362420-mRNA-1:exon:13003;Parent=Msa1362420-mRNA-1
tig0017836 exon 4074 4136 4074 ID=Msa1362420-mRNA-1:exon:13004;Parent=Msa1362420-mRNA-1
tig0017836 exon 4217 4309 4217 ID=Msa1362420-mRNA-1:exon:13005;Parent=Msa1362420-mRNA-1
tig0017836 exon 4536 4880 4536 ID=Msa1362420-mRNA-1:exon:13006;Parent=Msa1362420-mRNA-1
tig0017836 five_prime_UTR 1281 1600 1281 ID=Msa1362420-mRNA-1:five_prime_utr;Parent=Msa1362420-mRNA-1
tig0017836 CDS 1601 1673 1601 ID=Msa1362420-mRNA-1:cds;Parent=Msa1362420-mRNA-1
tig0017836 CDS 2628 2700 2628 ID=Msa1362420-mRNA-1:cds;Parent=Msa1362420-mRNA-1
tig0017836 CDS 3168 3268 3168 ID=Msa1362420-mRNA-1:cds;Parent=Msa1362420-mRNA-1
tig0017836 CDS 3422 3487 3422 ID=Msa1362420-mRNA-1:cds;Parent=Msa1362420-mRNA-1
tig0017836 CDS 3775 3872 3775 ID=Msa1362420-mRNA-1:cds;Parent=Msa1362420-mRNA-1
tig0017836 CDS 4074 4136 4074 ID=Msa1362420-mRNA-1:cds;Parent=Msa1362420-mRNA-1
tig0017836 CDS 4217 4309 4217 ID=Msa1362420-mRNA-1:cds;Parent=Msa1362420-mRNA-1
tig0017836 CDS 4536 4616 4536 ID=Msa1362420-mRNA-1:cds;Parent=Msa1362420-mRNA-1
tig0017836 three_prime_UTR 4617 4880 4617 ID=Msa1362420-mRNA-1:three_prime_utr;Parent=Msa1362420-mRNA-1
Gene Sequence

>Msa1362420

ATGGCAGCAGCACCTGCAAGAGCTCGTGCCGATTACGATTACCTCATCAAGCTTCTTCTTATCGGCGACAGTGGTGTGGGGAAGAGTTGTTTGCTTTTGAGGTTTTCTGATGGCTCCTTCACAACCAGTTTTATCACCACCATTGGCATTGATTTCAAGATAAGAACCATTGAACTTGATGGCAAACGCATTAAGTTGCAAATTTGGGACACAGCTGGTCAGGAGAGATTCCGAACTATTACTACAGCTTATTATCGTGGAGCCATGGGTATCTTGCTGGTTTACGATGTTACTGATGAAGCTTCTTTCAATAATATTAGGAATTGGATTCGCAATATTGAACAACATGCTTCTGACAATGTAAACAAGATACTTGTGGGAAACAAGGCTGATATGGATGAAAGTAAACGGGCTGTACCTACCTCCAAAGGTCAAGCTCTTGCTGATGAGTATGGTATCAAGTTCTTTGAAACTAGTGCAAAAACAAACATGAATGTGGAGGAAATTTTCTTTTCAATAGCAAGAGATATCAAGCAAAGGCTTGCAGACACTGTTTCTAGTACTGAGCCCCAGAGTATCAAGATTAACCAACAAGACCAGGCAGCCAATGGTGGTCAGGCTGCACAAAAATCGGCTTGCTGCGGTTAA

Protein sequence

>Msa1362420

MAAAPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNMNVEEIFFSIARDIKQRLADTVSSTEPQSIKINQQDQAANGGQAAQKSACCG*