Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0112790 | XP_003590484.1 | 99.087 | 219 | 2 | 0 | 1 | 219 | 1 | 219 | 3.36e-158 | 446 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0112790 | sp|Q8L8B8|LOG3_ARATH | 85.581 | 215 | 29 | 2 | 1 | 214 | 1 | 214 | 7.20e-135 | 380 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0112790 | G7IBJ6 | 99.087 | 219 | 2 | 0 | 1 | 219 | 1 | 219 | 1.60e-158 | 446 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001450 | Msa0112790 | 0.847939 | 8.416475e-60 | -8.615850e-47 |
| Msa0016670 | Msa0112790 | 0.809584 | 1.759983e-50 | -8.615850e-47 |
| Msa0026130 | Msa0112790 | 0.962858 | 2.214434e-121 | -8.615850e-47 |
| Msa0027230 | Msa0112790 | 0.812467 | 4.178535e-51 | -8.615850e-47 |
| Msa0027260 | Msa0112790 | 0.824806 | 6.610081e-54 | -8.615850e-47 |
| Msa0029630 | Msa0112790 | 0.820842 | 5.538131e-53 | -8.615850e-47 |
| Msa0032260 | Msa0112790 | 0.802148 | 6.436940e-49 | -8.615850e-47 |
| Msa0048180 | Msa0112790 | 0.834498 | 2.895386e-56 | -8.615850e-47 |
| Msa0056470 | Msa0112790 | 0.808068 | 3.713262e-50 | -8.615850e-47 |
| Msa0064350 | Msa0112790 | 0.806745 | 7.086255e-50 | -8.615850e-47 |
| Msa0069330 | Msa0112790 | 0.819434 | 1.163885e-52 | -8.615850e-47 |
| Msa0073670 | Msa0112790 | 0.896304 | 4.196567e-76 | -8.615850e-47 |
| Msa0076040 | Msa0112790 | 0.836653 | 8.250649e-57 | -8.615850e-47 |
| Msa0079920 | Msa0112790 | 0.807130 | 5.873790e-50 | -8.615850e-47 |
| Msa0082280 | Msa0112790 | 0.809149 | 2.182739e-50 | -8.615850e-47 |
| Msa0100740 | Msa0112790 | 0.804486 | 2.111313e-49 | -8.615850e-47 |
| Msa0104550 | Msa0112790 | 0.813666 | 2.279943e-51 | -8.615850e-47 |
| Msa0109050 | Msa0112790 | 0.812561 | 3.985283e-51 | -8.615850e-47 |
| Msa0112790 | Msa0115160 | 0.801466 | 8.883898e-49 | -8.615850e-47 |
| Msa0112790 | Msa0122970 | 0.810863 | 9.330418e-51 | -8.615850e-47 |
| Msa0112790 | Msa0125450 | 0.831739 | 1.406974e-55 | -8.615850e-47 |
| Msa0112790 | Msa0125540 | 0.833551 | 4.998962e-56 | -8.615850e-47 |
| Msa0112790 | Msa0128860 | 0.837047 | 6.546196e-57 | -8.615850e-47 |
| Msa0112790 | Msa0134610 | 0.838457 | 2.842867e-57 | -8.615850e-47 |
| Msa0112790 | Msa0140820 | 0.831150 | 1.964567e-55 | -8.615850e-47 |
| Msa0112790 | Msa0166590 | 0.964660 | 1.316080e-123 | -8.615850e-47 |
| Msa0112790 | Msa0167480 | 0.800951 | 1.132777e-48 | -8.615850e-47 |
| Msa0112790 | Msa0173890 | 0.806653 | 7.410454e-50 | -8.615850e-47 |
| Msa0112790 | Msa0174730 | 0.836062 | 1.165898e-56 | -8.615850e-47 |
| Msa0112790 | Msa0174770 | 0.811406 | 7.113975e-51 | -8.615850e-47 |
| Msa0112790 | Msa0181610 | 0.840244 | 9.770807e-58 | -8.615850e-47 |
| Msa0112790 | Msa0186890 | 0.802974 | 4.349261e-49 | -8.615850e-47 |
| Msa0112790 | Msa0194540 | 0.805493 | 1.300014e-49 | -8.615850e-47 |
| Msa0112790 | Msa0197420 | 0.814246 | 1.698440e-51 | -8.615850e-47 |
| Msa0112790 | Msa0199880 | 0.820681 | 6.031605e-53 | -8.615850e-47 |
| Msa0112790 | Msa0215800 | 0.810923 | 9.054639e-51 | -8.615850e-47 |
| Msa0112790 | Msa0226460 | 0.805579 | 1.247302e-49 | -8.615850e-47 |
| Msa0112790 | Msa0229760 | 0.802244 | 6.150001e-49 | -8.615850e-47 |
| Msa0112790 | Msa0255090 | 0.803647 | 3.155122e-49 | -8.615850e-47 |
| Msa0112790 | Msa0259380 | 0.803053 | 4.188589e-49 | -8.615850e-47 |
| Msa0112790 | Msa0294160 | 0.814765 | 1.304376e-51 | -8.615850e-47 |
| Msa0112790 | Msa0295080 | 0.808494 | 3.013434e-50 | -8.615850e-47 |
| Msa0112790 | Msa0304590 | 0.807906 | 4.020837e-50 | -8.615850e-47 |
| Msa0112790 | Msa0307850 | 0.826212 | 3.071388e-54 | -8.615850e-47 |
| Msa0112790 | Msa0339500 | 0.817169 | 3.791730e-52 | -8.615850e-47 |
| Msa0112790 | Msa0369450 | 0.850198 | 1.983121e-60 | -8.615850e-47 |
| Msa0112790 | Msa0380300 | 0.818538 | 1.860286e-52 | -8.615850e-47 |
| Msa0112790 | Msa0387730 | 0.806348 | 8.591822e-50 | -8.615850e-47 |
| Msa0112790 | Msa0405650 | 0.804493 | 2.103654e-49 | -8.615850e-47 |
| Msa0112790 | Msa0405710 | 0.812945 | 3.283634e-51 | -8.615850e-47 |
| Msa0112790 | Msa0443390 | 0.824947 | 6.125315e-54 | -8.615850e-47 |
| Msa0112790 | Msa0475790 | 0.834688 | 2.593720e-56 | -8.615850e-47 |
| Msa0112790 | Msa0484290 | 0.817246 | 3.641694e-52 | -8.615850e-47 |
| Msa0112790 | Msa0521050 | 0.805962 | 1.036349e-49 | -8.615850e-47 |
| Msa0112790 | Msa0524500 | 0.851913 | 6.508426e-61 | -8.615850e-47 |
| Msa0112790 | Msa0526540 | 0.808829 | 2.555325e-50 | -8.615850e-47 |
| Msa0112790 | Msa0535110 | 0.805610 | 1.228433e-49 | -8.615850e-47 |
| Msa0112790 | Msa0541860 | 0.801360 | 9.342801e-49 | -8.615850e-47 |
| Msa0112790 | Msa0552810 | 0.851782 | 7.093064e-61 | -8.615850e-47 |
| Msa0112790 | Msa0556060 | 0.805689 | 1.182719e-49 | -8.615850e-47 |
| Msa0112790 | Msa0576940 | 0.802353 | 5.841699e-49 | -8.615850e-47 |
| Msa0112790 | Msa0581070 | 0.848590 | 5.564542e-60 | -8.615850e-47 |
| Msa0112790 | Msa0581110 | 0.811839 | 5.728435e-51 | -8.615850e-47 |
| Msa0112790 | Msa0588360 | 0.806418 | 8.305651e-50 | -8.615850e-47 |
| Msa0112790 | Msa0620990 | 0.806327 | 8.682221e-50 | -8.615850e-47 |
| Msa0112790 | Msa0638480 | 0.800172 | 1.632538e-48 | -8.615850e-47 |
| Msa0112790 | Msa0644800 | 0.812481 | 4.149741e-51 | -8.615850e-47 |
| Msa0112790 | Msa0661300 | 0.813270 | 2.786384e-51 | -8.615850e-47 |
| Msa0112790 | Msa0666230 | 0.810566 | 1.081573e-50 | -8.615850e-47 |
| Msa0112790 | Msa0669520 | 0.822741 | 2.013787e-53 | -8.615850e-47 |
| Msa0112790 | Msa0683570 | 0.804005 | 2.658215e-49 | -8.615850e-47 |
| Msa0112790 | Msa0687630 | 0.836311 | 1.008045e-56 | -8.615850e-47 |
| Msa0112790 | Msa0692840 | 0.830193 | 3.370361e-55 | -8.615850e-47 |
| Msa0112790 | Msa0692940 | 0.808147 | 3.572755e-50 | -8.615850e-47 |
| Msa0112790 | Msa0713820 | 0.817309 | 3.525104e-52 | -8.615850e-47 |
| Msa0112790 | Msa0719510 | 0.807275 | 5.474352e-50 | -8.615850e-47 |
| Msa0112790 | Msa0738040 | 0.822436 | 2.371417e-53 | -8.615850e-47 |
| Msa0112790 | Msa0749230 | 0.803569 | 3.274088e-49 | -8.615850e-47 |
| Msa0112790 | Msa0749760 | 0.808720 | 2.696339e-50 | -8.615850e-47 |
| Msa0112790 | Msa0752510 | 0.829953 | 3.857754e-55 | -8.615850e-47 |
| Msa0112790 | Msa0784200 | 0.805543 | 1.268583e-49 | -8.615850e-47 |
| Msa0112790 | Msa0788770 | 0.807034 | 6.154289e-50 | -8.615850e-47 |
| Msa0112790 | Msa0790400 | 0.807442 | 5.044556e-50 | -8.615850e-47 |
| Msa0112790 | Msa0797750 | 0.822203 | 2.686408e-53 | -8.615850e-47 |
| Msa0112790 | Msa0818310 | 0.828243 | 1.001858e-54 | -8.615850e-47 |
| Msa0112790 | Msa0824640 | 0.812881 | 3.390854e-51 | -8.615850e-47 |
| Msa0112790 | Msa0830880 | 0.830783 | 2.418264e-55 | -8.615850e-47 |
| Msa0112790 | Msa0858770 | 0.818150 | 2.277784e-52 | -8.615850e-47 |
| Msa0112790 | Msa0864010 | 0.820039 | 8.467484e-53 | -8.615850e-47 |
| Msa0112790 | Msa0902760 | 0.801024 | 1.094230e-48 | -8.615850e-47 |
| Msa0112790 | Msa0931460 | 0.812538 | 4.030603e-51 | -8.615850e-47 |
| Msa0112790 | Msa0936340 | 0.813276 | 2.778335e-51 | -8.615850e-47 |
| Msa0112790 | Msa0943170 | 0.814997 | 1.158166e-51 | -8.615850e-47 |
| Msa0112790 | Msa0968590 | 0.809802 | 1.580238e-50 | -8.615850e-47 |
| Msa0112790 | Msa1006840 | 0.804149 | 2.481548e-49 | -8.615850e-47 |
| Msa0112790 | Msa1012720 | 0.834781 | 2.457905e-56 | -8.615850e-47 |
| Msa0112790 | Msa1012790 | 0.801940 | 7.103931e-49 | -8.615850e-47 |
| Msa0112790 | Msa1013400 | 0.801652 | 8.140154e-49 | -8.615850e-47 |
| Msa0112790 | Msa1019240 | 0.833732 | 4.503628e-56 | -8.615850e-47 |
| Msa0112790 | Msa1019260 | 0.850843 | 1.306298e-60 | -8.615850e-47 |
| Msa0112790 | Msa1040400 | 0.809546 | 1.793629e-50 | -8.615850e-47 |
| Msa0112790 | Msa1055010 | 0.826039 | 3.376067e-54 | -8.615850e-47 |
| Msa0112790 | Msa1078170 | 0.811987 | 5.316530e-51 | -8.615850e-47 |
| Msa0112790 | Msa1079230 | 0.804156 | 2.472575e-49 | -8.615850e-47 |
| Msa0112790 | Msa1081150 | 0.816052 | 6.746999e-52 | -8.615850e-47 |
| Msa0112790 | Msa1093530 | 0.800123 | 1.670711e-48 | -8.615850e-47 |
| Msa0112790 | Msa1093840 | 0.827417 | 1.582729e-54 | -8.615850e-47 |
| Msa0112790 | Msa1101600 | 0.810066 | 1.386475e-50 | -8.615850e-47 |
| Msa0112790 | Msa1104140 | 0.815034 | 1.136593e-51 | -8.615850e-47 |
| Msa0112790 | Msa1104210 | 0.823884 | 1.089189e-53 | -8.615850e-47 |
| Msa0112790 | Msa1115770 | 0.807568 | 4.742925e-50 | -8.615850e-47 |
| Msa0112790 | Msa1124110 | 0.824653 | 7.185372e-54 | -8.615850e-47 |
| Msa0112790 | Msa1126510 | 0.868345 | 6.996925e-66 | -8.615850e-47 |
| Msa0112790 | Msa1126770 | 0.840946 | 6.400106e-58 | -8.615850e-47 |
| Msa0112790 | Msa1126830 | 0.809581 | 1.763254e-50 | -8.615850e-47 |
| Msa0112790 | Msa1127590 | 0.805748 | 1.149454e-49 | -8.615850e-47 |
| Msa0112790 | Msa1127890 | 0.815951 | 7.105680e-52 | -8.615850e-47 |
| Msa0112790 | Msa1130980 | 0.808080 | 3.692072e-50 | -8.615850e-47 |
| Msa0112790 | Msa1131560 | 0.815254 | 1.015579e-51 | -8.615850e-47 |
| Msa0112790 | Msa1134110 | 0.815410 | 9.375905e-52 | -8.615850e-47 |
| Msa0112790 | Msa1157870 | 0.808636 | 2.810377e-50 | -8.615850e-47 |
| Msa0112790 | Msa1165870 | 0.830528 | 2.791038e-55 | -8.615850e-47 |
| Msa0112790 | Msa1165940 | 0.811514 | 6.740389e-51 | -8.615850e-47 |
| Msa0112790 | Msa1166860 | 0.846623 | 1.933893e-59 | -8.615850e-47 |
| Msa0112790 | Msa1184370 | 0.810596 | 1.065510e-50 | -8.615850e-47 |
| Msa0112790 | Msa1207270 | 0.807757 | 4.324588e-50 | -8.615850e-47 |
| Msa0112790 | Msa1218600 | 0.808651 | 2.788785e-50 | -8.615850e-47 |
| Msa0112790 | Msa1221060 | 0.818785 | 1.635396e-52 | -8.615850e-47 |
| Msa0112790 | Msa1227690 | 0.814540 | 1.462604e-51 | -8.615850e-47 |
| Msa0112790 | Msa1251160 | 0.862365 | 5.337256e-64 | -8.615850e-47 |
| Msa0112790 | Msa1257510 | 0.826482 | 2.648659e-54 | -8.615850e-47 |
| Msa0112790 | Msa1292830 | 0.813258 | 2.803716e-51 | -8.615850e-47 |
| Msa0112790 | Msa1303240 | 0.806158 | 9.422040e-50 | -8.615850e-47 |
| Msa0112790 | Msa1307950 | 0.841587 | 4.339790e-58 | -8.615850e-47 |
| Msa0112790 | Msa1321630 | 0.806209 | 9.192574e-50 | -8.615850e-47 |
| Msa0112790 | Msa1333560 | 0.800155 | 1.645866e-48 | -8.615850e-47 |
| Msa0112790 | Msa1361400 | 0.817308 | 3.526898e-52 | -8.615850e-47 |
| Msa0112790 | Msa1361410 | 0.816694 | 4.846035e-52 | -8.615850e-47 |
| Msa0112790 | Msa1363330 | 0.808666 | 2.768838e-50 | -8.615850e-47 |
| Msa0112790 | Msa1365150 | 0.819226 | 1.298201e-52 | -8.615850e-47 |
| Msa0112790 | Msa1367590 | 0.854434 | 1.234188e-61 | -8.615850e-47 |
| Msa0112790 | Msa1367880 | 0.831617 | 1.508464e-55 | -8.615850e-47 |
| Msa0112790 | Msa1369150 | 0.807130 | 5.874517e-50 | -8.615850e-47 |
| Msa0112790 | Msa1370860 | 0.808838 | 2.543378e-50 | -8.615850e-47 |
| Msa0112790 | Msa1376650 | 0.832266 | 1.042773e-55 | -8.615850e-47 |
| Msa0112790 | Msa1379760 | 0.835791 | 1.365721e-56 | -8.615850e-47 |
| Msa0112790 | Msa1382780 | 0.810291 | 1.239829e-50 | -8.615850e-47 |
| Msa0112790 | Msa1386600 | 0.808151 | 3.566091e-50 | -8.615850e-47 |
| Msa0112790 | Msa1401860 | 0.815506 | 8.928210e-52 | -8.615850e-47 |
| Msa0112790 | Msa1404190 | 0.834057 | 3.735066e-56 | -8.615850e-47 |
| Msa0112790 | Msa1418340 | 0.810933 | 9.010301e-51 | -8.615850e-47 |
| Msa0112790 | Msa1438640 | 0.806900 | 6.570757e-50 | -8.615850e-47 |
| Msa0112790 | Msa1443300 | 0.814642 | 1.388861e-51 | -8.615850e-47 |
| Msa0112790 | Msa1446810 | 0.814072 | 1.856294e-51 | -8.615850e-47 |
| Msa0112790 | Msa1450280 | 0.822242 | 2.630923e-53 | -8.615850e-47 |
| Msa0112790 | Msa1451160 | 0.807377 | 5.206471e-50 | -8.615850e-47 |
| Msa0112790 | Msa1465080 | 0.807650 | 4.558175e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0112790 | MtrunA17_Chr1g0181131 | 99.087 | 219 | 2 | 0 | 1 | 219 | 1 | 219 | 3.09e-162 | 446 |
| Msa0112790 | MtrunA17_Chr7g0264181 | 93.981 | 216 | 13 | 0 | 4 | 219 | 5 | 220 | 5.07e-155 | 428 |
| Msa0112790 | MtrunA17_Chr2g0326841 | 85.507 | 207 | 30 | 0 | 1 | 207 | 1 | 207 | 2.15e-132 | 370 |
| Msa0112790 | MtrunA17_Chr4g0028871 | 89.637 | 193 | 20 | 0 | 12 | 204 | 12 | 204 | 4.79e-128 | 359 |
| Msa0112790 | MtrunA17_Chr3g0142491 | 76.190 | 210 | 50 | 0 | 10 | 219 | 12 | 221 | 2.09e-122 | 346 |
| Msa0112790 | MtrunA17_Chr1g0177391 | 71.770 | 209 | 57 | 1 | 10 | 218 | 6 | 212 | 8.21e-112 | 318 |
| Msa0112790 | MtrunA17_Chr1g0151201 | 67.157 | 204 | 65 | 1 | 11 | 212 | 7 | 210 | 7.92e-101 | 291 |
| Msa0112790 | MtrunA17_Chr1g0156401 | 64.286 | 112 | 19 | 1 | 40 | 130 | 1 | 112 | 9.98e-43 | 140 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0112790 | AT2G37210.1 | 85.581 | 215 | 29 | 2 | 1 | 214 | 1 | 214 | 7.32e-136 | 380 |
| Msa0112790 | AT3G53450.1 | 86.058 | 208 | 28 | 1 | 1 | 207 | 1 | 208 | 2.79e-133 | 373 |
| Msa0112790 | AT2G28305.1 | 89.394 | 198 | 21 | 0 | 10 | 207 | 5 | 202 | 1.02e-130 | 367 |
| Msa0112790 | AT2G37210.2 | 76.569 | 239 | 30 | 3 | 1 | 214 | 1 | 238 | 5.01e-130 | 366 |
| Msa0112790 | AT2G28305.3 | 90.503 | 179 | 17 | 0 | 10 | 188 | 5 | 183 | 2.55e-119 | 337 |
| Msa0112790 | AT5G06300.1 | 78.218 | 202 | 44 | 0 | 10 | 211 | 6 | 207 | 5.60e-118 | 335 |
| Msa0112790 | AT5G03270.1 | 82.796 | 186 | 32 | 0 | 10 | 195 | 16 | 201 | 3.54e-112 | 319 |
| Msa0112790 | AT5G03270.2 | 83.425 | 181 | 30 | 0 | 10 | 190 | 16 | 196 | 5.55e-109 | 311 |
| Msa0112790 | AT4G35190.1 | 71.429 | 203 | 58 | 0 | 6 | 208 | 2 | 204 | 1.62e-108 | 311 |
| Msa0112790 | AT2G35990.1 | 69.072 | 194 | 60 | 0 | 10 | 203 | 6 | 199 | 2.99e-105 | 302 |
| Msa0112790 | AT4G35190.2 | 73.057 | 193 | 50 | 1 | 6 | 198 | 2 | 192 | 8.42e-103 | 296 |
| Msa0112790 | AT5G11950.1 | 63.679 | 212 | 74 | 1 | 1 | 212 | 1 | 209 | 2.04e-100 | 290 |
| Msa0112790 | AT5G11950.2 | 63.679 | 212 | 74 | 1 | 1 | 212 | 1 | 209 | 2.04e-100 | 290 |
| Msa0112790 | AT5G11950.3 | 63.679 | 212 | 74 | 1 | 1 | 212 | 1 | 209 | 2.04e-100 | 290 |
| Msa0112790 | AT2G28305.2 | 91.667 | 132 | 11 | 0 | 10 | 141 | 5 | 136 | 1.80e-86 | 253 |
| Msa0112790 | AT2G35990.3 | 69.388 | 147 | 45 | 0 | 57 | 203 | 1 | 147 | 1.81e-76 | 228 |
| Msa0112790 | AT2G35990.2 | 69.388 | 147 | 45 | 0 | 57 | 203 | 1 | 147 | 1.81e-76 | 228 |
| Msa0112790 | AT5G11950.4 | 64.103 | 156 | 56 | 0 | 57 | 212 | 1 | 156 | 8.01e-73 | 218 |
| Msa0112790 | AT5G26140.2 | 51.656 | 151 | 51 | 1 | 84 | 212 | 6 | 156 | 1.16e-46 | 152 |
| Msa0112790 | AT5G26140.1 | 50.365 | 137 | 46 | 1 | 98 | 212 | 1 | 137 | 1.90e-39 | 133 |
| Msa0112790 | AT5G26140.3 | 53.774 | 106 | 49 | 0 | 107 | 212 | 17 | 122 | 3.69e-35 | 121 |
Find 68 sgRNAs with CRISPR-Local
Find 190 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAAATATTGATCTAGTTTA+TGG | 0.173128 | 1_3:+28314740 | Msa0112790:CDS |
| TTTAGAAATAGATTACTTAA+AGG | 0.231492 | 1_3:-28317304 | None:intergenic |
| AAATTACATGCAGGTGGTTA+TGG | 0.290968 | 1_3:+28316532 | Msa0112790:intron |
| TTAGAAATAGATTACTTAAA+GGG | 0.298161 | 1_3:-28317303 | None:intergenic |
| CCTAGTACTTACAACTTAGA+AGG | 0.333083 | 1_3:-28317241 | None:intergenic |
| CCTTCTAAGTTGTAAGTACT+AGG | 0.339347 | 1_3:+28317241 | Msa0112790:three_prime_UTR |
| CAAGATGCTGCCATTGAACT+TGG | 0.349737 | 1_3:+28314276 | Msa0112790:CDS |
| ACAATTATGTGGCGCGCATT+TGG | 0.351381 | 1_3:-28316799 | None:intergenic |
| TTACAAATGAAATTTCTTCC+AGG | 0.361641 | 1_3:-28317153 | None:intergenic |
| CTTGAGATGTCATACTCTTC+AGG | 0.376180 | 1_3:-28317025 | None:intergenic |
| AGGAGGAAGCATTGGTCTAA+TGG | 0.380070 | 1_3:+28314763 | Msa0112790:CDS |
| AAATTTCATTTGTAAAGTAC+TGG | 0.382613 | 1_3:+28317161 | Msa0112790:three_prime_UTR |
| AAAAGAGTTAGTGAAGAAAC+TGG | 0.405307 | 1_3:+28316837 | Msa0112790:CDS |
| CATTGAACTTGGAAATGAAT+TGG | 0.407304 | 1_3:+28314287 | Msa0112790:CDS |
| AATTACATGCAGGTGGTTAT+GGG | 0.415602 | 1_3:+28316533 | Msa0112790:intron |
| GATGGTGGAAGACATGTCAT+AGG | 0.434367 | 1_3:+28314809 | Msa0112790:CDS |
| CTCTCTAGGCATGAGTGTCT+TGG | 0.437074 | 1_3:-28314973 | None:intergenic |
| AAGCATTGGTCTAATGGGTT+CGG | 0.439439 | 1_3:+28314769 | Msa0112790:CDS |
| GTCATAACCTGGGCTCAACT+TGG | 0.447889 | 1_3:+28316577 | Msa0112790:CDS |
| GGAGGAAGCATTGGTCTAAT+GGG | 0.451429 | 1_3:+28314764 | Msa0112790:CDS |
| TCTCTAGGCATGAGTGTCTT+GGG | 0.451553 | 1_3:-28314972 | None:intergenic |
| CAATTCATTTCCAAGTTCAA+TGG | 0.462751 | 1_3:-28314286 | None:intergenic |
| TTGCAAGAAACAAATACAAA+TGG | 0.467273 | 1_3:+28314170 | Msa0112790:exon |
| CTTCTAAGTTGTAAGTACTA+GGG | 0.474591 | 1_3:+28317242 | Msa0112790:three_prime_UTR |
| GTGGGACTAGTAAATGTTGA+TGG | 0.489170 | 1_3:+28316718 | Msa0112790:CDS |
| TAGAAATAGATTACTTAAAG+GGG | 0.491976 | 1_3:-28317302 | None:intergenic |
| ATTGATCTAGTTTATGGAGG+AGG | 0.513882 | 1_3:+28314746 | Msa0112790:CDS |
| CAAATACAAATGGAGACAAA+TGG | 0.514050 | 1_3:+28314180 | Msa0112790:exon |
| TAGCTCAGGCTAACCTGGTA+AGG | 0.520557 | 1_3:-28315513 | None:intergenic |
| TGACTTCAAGAAGCTCCTCT+AGG | 0.523303 | 1_3:-28316558 | None:intergenic |
| ACTTGGGATTCATGACAAAC+CGG | 0.526362 | 1_3:+28316594 | Msa0112790:CDS |
| CATCGACAAAGCTGTGGAAG+AGG | 0.532010 | 1_3:+28316765 | Msa0112790:CDS |
| AGCTTCTTGAAGTCATAACC+TGG | 0.532925 | 1_3:+28316566 | Msa0112790:CDS |
| GTTTATGGAGGAGGAAGCAT+TGG | 0.534440 | 1_3:+28314755 | Msa0112790:CDS |
| GCGTTGCTTCGAAGTTGAGC+TGG | 0.538596 | 1_3:+28316978 | Msa0112790:CDS |
| GTTTCACAAGCTGTTCATGA+TGG | 0.539577 | 1_3:+28314791 | Msa0112790:CDS |
| TTTGCAGCTAACTGGTGAAA+CGG | 0.542234 | 1_3:+28315415 | Msa0112790:intron |
| GAAGCAACGCCTTCGTGACA+AGG | 0.544836 | 1_3:-28316965 | None:intergenic |
| CTGTAGCAGATATGCATCAA+AGG | 0.549564 | 1_3:+28315453 | Msa0112790:CDS |
| AATTTCATTTGTAAAGTACT+GGG | 0.549840 | 1_3:+28317162 | Msa0112790:three_prime_UTR |
| GACTTCAAGAAGCTCCTCTA+GGG | 0.553887 | 1_3:-28316557 | None:intergenic |
| TCATAACCTGGGCTCAACTT+GGG | 0.556522 | 1_3:+28316578 | Msa0112790:CDS |
| CTGAAGAGTATGACATCTCA+AGG | 0.559781 | 1_3:+28317026 | Msa0112790:CDS |
| TAAGAGTGTCAAAGTTCAAG+AGG | 0.560240 | 1_3:+28314208 | Msa0112790:CDS |
| GCATCAAAGGAAGGCAGAGA+TGG | 0.563589 | 1_3:+28315466 | Msa0112790:CDS |
| TTCGAAGTTGAGCTGGCAGA+TGG | 0.564883 | 1_3:+28316985 | Msa0112790:CDS |
| TTCTAAGTTGTAAGTACTAG+GGG | 0.569146 | 1_3:+28317243 | Msa0112790:three_prime_UTR |
| GAGGTGGAAAGAAGCTATTG+TGG | 0.570153 | 1_3:+28317106 | Msa0112790:three_prime_UTR |
| TTCATTCATCGACAAAGCTG+TGG | 0.574795 | 1_3:+28316759 | Msa0112790:CDS |
| CTAGTACTTACAACTTAGAA+GGG | 0.576646 | 1_3:-28317240 | None:intergenic |
| AATATTGATCTAGTTTATGG+AGG | 0.578824 | 1_3:+28314743 | Msa0112790:CDS |
| TCACAAGCTGTTCATGATGG+TGG | 0.582768 | 1_3:+28314794 | Msa0112790:CDS |
| ATGAATCCCAAGTTGAGCCC+AGG | 0.585691 | 1_3:-28316584 | None:intergenic |
| ATCGACAAAGCTGTGGAAGA+GGG | 0.594245 | 1_3:+28316766 | Msa0112790:CDS |
| GATGTCATACTCTTCAGGAT+AGG | 0.595686 | 1_3:-28317020 | None:intergenic |
| TTTAGTTTACTTGATGTGCA+AGG | 0.599214 | 1_3:+28317059 | Msa0112790:three_prime_UTR |
| CAGCTAACTGGTGAAACGGT+GGG | 0.599390 | 1_3:+28315419 | Msa0112790:intron |
| ATGGTGGAAGACATGTCATA+GGG | 0.603354 | 1_3:+28314810 | Msa0112790:CDS |
| GCAGCTAACTGGTGAAACGG+TGG | 0.613685 | 1_3:+28315418 | Msa0112790:intron |
| CAAGACACTCATGCCTAGAG+AGG | 0.614658 | 1_3:+28314974 | Msa0112790:CDS |
| AAGAGTGTCAAAGTTCAAGA+GGG | 0.616352 | 1_3:+28314209 | Msa0112790:CDS |
| AGCAGATATGCATCAAAGGA+AGG | 0.629113 | 1_3:+28315457 | Msa0112790:CDS |
| GCTTCTTGAAGTCATAACCT+GGG | 0.658696 | 1_3:+28316567 | Msa0112790:CDS |
| GATTATGTTCCTTGTCACGA+AGG | 0.661791 | 1_3:+28316956 | Msa0112790:CDS |
| TAGGTGCTGATACAATTATG+TGG | 0.681813 | 1_3:-28316810 | None:intergenic |
| TCTAAGTTGTAAGTACTAGG+GGG | 0.696829 | 1_3:+28317244 | Msa0112790:three_prime_UTR |
| AGAGTTAGTGAAGAAACTGG+AGG | 0.710150 | 1_3:+28316840 | Msa0112790:CDS |
| AGGTGGTTATGGGACCCTAG+AGG | 0.728214 | 1_3:+28316543 | Msa0112790:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATCTTATTTATTTTTTG+TGG | + | chr1_3:28314373-28314392 | Msa0112790:intron | 10.0% |
| !! | AAATATATGAAAAAAACTTT+AGG | - | chr1_3:28314601-28314620 | None:intergenic | 10.0% |
| !! | TAAAAGTAATAATAAAGAAA+TGG | + | chr1_3:28315230-28315249 | Msa0112790:intron | 10.0% |
| !! | TGAATTAGTTAATAATATTT+AGG | - | chr1_3:28316649-28316668 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTCTCAAAAAAGA+AGG | - | chr1_3:28314357-28314376 | None:intergenic | 15.0% |
| !!! | ATTAAGTTTGAAATGAAAAA+TGG | - | chr1_3:28314672-28314691 | None:intergenic | 15.0% |
| !! | ATGAAAAAAGTGAATAATAA+AGG | - | chr1_3:28315082-28315101 | None:intergenic | 15.0% |
| !!! | TTGTTAAAGTTATTTTCTTT+TGG | + | chr1_3:28315182-28315201 | Msa0112790:intron | 15.0% |
| !!! | TGTTAAAGTTATTTTCTTTT+GGG | + | chr1_3:28315183-28315202 | Msa0112790:intron | 15.0% |
| !!! | TTTTAGTAATTAAGTTTGTT+AGG | - | chr1_3:28315671-28315690 | None:intergenic | 15.0% |
| !! | TAACAAACTTAATTACTAAA+AGG | + | chr1_3:28315670-28315689 | Msa0112790:intron | 15.0% |
| !! | TTAGAAATAGATTACTTAAA+GGG | - | chr1_3:28317306-28317325 | None:intergenic | 15.0% |
| !! | TTTAGAAATAGATTACTTAA+AGG | - | chr1_3:28317307-28317326 | None:intergenic | 15.0% |
| !!! | TCTTATTTATTTTTTGTGGA+TGG | + | chr1_3:28314377-28314396 | Msa0112790:intron | 20.0% |
| !!! | CTTATTTATTTTTTGTGGAT+GGG | + | chr1_3:28314378-28314397 | Msa0112790:intron | 20.0% |
| !!! | TTATTTATTTTTTGTGGATG+GGG | + | chr1_3:28314379-28314398 | Msa0112790:intron | 20.0% |
| !! | ACAAACCATTAAAATTGATT+GGG | - | chr1_3:28314710-28314729 | None:intergenic | 20.0% |
| !!! | AGAAATATTGATCTAGTTTA+TGG | + | chr1_3:28314740-28314759 | Msa0112790:CDS | 20.0% |
| !! | TCATAAAAATGAAAACTTTG+AGG | - | chr1_3:28314849-28314868 | None:intergenic | 20.0% |
| !! | TTAACTTAAAATACAGAACA+GGG | - | chr1_3:28315137-28315156 | None:intergenic | 20.0% |
| !!! | AATTTTAGCCAAATATGTTA+GGG | - | chr1_3:28315913-28315932 | None:intergenic | 20.0% |
| !!! | AAATTTTAGCCAAATATGTT+AGG | - | chr1_3:28315914-28315933 | None:intergenic | 20.0% |
| !!! | TTTTCAAAGACTTTTATTTC+TGG | + | chr1_3:28316131-28316150 | Msa0112790:intron | 20.0% |
| !! | GAATTTAATGCAAAAAACAT+AGG | - | chr1_3:28316497-28316516 | None:intergenic | 20.0% |
| !! | AAATTTCATTTGTAAAGTAC+TGG | + | chr1_3:28317161-28317180 | Msa0112790:three_prime_UTR | 20.0% |
| !!! | AATTTCATTTGTAAAGTACT+GGG | + | chr1_3:28317162-28317181 | Msa0112790:three_prime_UTR | 20.0% |
| !!! | AGTAATTTCACATTTTTTTC+AGG | - | chr1_3:28317193-28317212 | None:intergenic | 20.0% |
| !! | TAGAAATAGATTACTTAAAG+GGG | - | chr1_3:28317305-28317324 | None:intergenic | 20.0% |
| ! | TTGCAAGAAACAAATACAAA+TGG | + | chr1_3:28314170-28314189 | Msa0112790:exon | 25.0% |
| ! | AGGAAAAAAAACAGTATGTA+AGG | - | chr1_3:28314337-28314356 | None:intergenic | 25.0% |
| ! | ATTCCTTTGTATATTTCAGT+TGG | + | chr1_3:28314445-28314464 | Msa0112790:intron | 25.0% |
| ! | TTCCTTTGTATATTTCAGTT+GGG | + | chr1_3:28314446-28314465 | Msa0112790:intron | 25.0% |
| !! | ATACTTTAAAAAGCTGAGAA+AGG | - | chr1_3:28314649-28314668 | None:intergenic | 25.0% |
| !! | CTTATCCCAATCAATTTTAA+TGG | + | chr1_3:28314702-28314721 | Msa0112790:intron | 25.0% |
| ! | CACAAACCATTAAAATTGAT+TGG | - | chr1_3:28314711-28314730 | None:intergenic | 25.0% |
| !!! | TCAATTTTAATGGTTTGTGA+AGG | + | chr1_3:28314712-28314731 | Msa0112790:intron | 25.0% |
| !! | AATATTGATCTAGTTTATGG+AGG | + | chr1_3:28314743-28314762 | Msa0112790:CDS | 25.0% |
| ! | CTTAACTTAAAATACAGAAC+AGG | - | chr1_3:28315138-28315157 | None:intergenic | 25.0% |
| !!! | AAAGTTATTTTCTTTTGGGT+AGG | + | chr1_3:28315187-28315206 | Msa0112790:intron | 25.0% |
| ! | TGGCAACAATATTAATGATT+AGG | - | chr1_3:28315705-28315724 | None:intergenic | 25.0% |
| ! | AATCATTAATATTGTTGCCA+AGG | + | chr1_3:28315705-28315724 | Msa0112790:intron | 25.0% |
| ! | TAGTCAAATAAATATGACAC+TGG | + | chr1_3:28315801-28315820 | Msa0112790:intron | 25.0% |
| ! | AAAAAAAATGATCTGACCAT+TGG | + | chr1_3:28316365-28316384 | Msa0112790:intron | 25.0% |
| !! | ATTTAGGTTCCTTAACAAAA+TGG | - | chr1_3:28316633-28316652 | None:intergenic | 25.0% |
| ! | AATGTCAAATCTAGTTAAAC+TGG | - | chr1_3:28316685-28316704 | None:intergenic | 25.0% |
| ! | TATTATGTTTGATTCATCAC+AGG | + | chr1_3:28316934-28316953 | Msa0112790:intron | 25.0% |
| ! | TTACAAATGAAATTTCTTCC+AGG | - | chr1_3:28317156-28317175 | None:intergenic | 25.0% |
| !! | GAAATCAGTTTTCAAAAGAA+GGG | - | chr1_3:28317221-28317240 | None:intergenic | 25.0% |
| CAAATACAAATGGAGACAAA+TGG | + | chr1_3:28314180-28314199 | Msa0112790:exon | 30.0% | |
| CAATTCATTTCCAAGTTCAA+TGG | - | chr1_3:28314289-28314308 | None:intergenic | 30.0% | |
| CATTGAACTTGGAAATGAAT+TGG | + | chr1_3:28314287-28314306 | Msa0112790:CDS | 30.0% | |
| TCAAGCACAATAGACTATTA+TGG | - | chr1_3:28314881-28314900 | None:intergenic | 30.0% | |
| AAAATACAGAACAGGGAAAT+AGG | - | chr1_3:28315130-28315149 | None:intergenic | 30.0% | |
| !!! | ACTCTTTTGTTTTACTTCAG+TGG | + | chr1_3:28315261-28315280 | Msa0112790:intron | 30.0% |
| AAGAATAGTACACCTTACTT+TGG | + | chr1_3:28315536-28315555 | Msa0112790:intron | 30.0% | |
| AAGCATTAAAGACTGAGATA+TGG | - | chr1_3:28315638-28315657 | None:intergenic | 30.0% | |
| ACAATATTAATGATTAGGCG+TGG | - | chr1_3:28315700-28315719 | None:intergenic | 30.0% | |
| ACAGTGTATCAAAATTACCT+TGG | - | chr1_3:28315725-28315744 | None:intergenic | 30.0% | |
| TCTCTAATCATCATAGCATT+AGG | - | chr1_3:28315850-28315869 | None:intergenic | 30.0% | |
| AGGAAAGTAGATGCAAAAAA+TGG | - | chr1_3:28315982-28316001 | None:intergenic | 30.0% | |
| !!! | TTTTTTGCATCTACTTTCCT+TGG | + | chr1_3:28315982-28316001 | Msa0112790:intron | 30.0% |
| ! | TTTTGTACCAAACTTACTCA+TGG | + | chr1_3:28316016-28316035 | Msa0112790:intron | 30.0% |
| ATCAAAACCATGAGTAAGTT+TGG | - | chr1_3:28316026-28316045 | None:intergenic | 30.0% | |
| !!! | CTCATGGTTTTGATATAGAA+AGG | + | chr1_3:28316032-28316051 | Msa0112790:intron | 30.0% |
| AAATTAGTGACTGTTACAGA+AGG | + | chr1_3:28316180-28316199 | Msa0112790:intron | 30.0% | |
| GTGCATTATGTAATCAATCT+CGG | + | chr1_3:28316297-28316316 | Msa0112790:intron | 30.0% | |
| GTTGTTCGATTTCAAATCAA+TGG | - | chr1_3:28316323-28316342 | None:intergenic | 30.0% | |
| TGTGTGCCATAATTATTGTA+GGG | + | chr1_3:28316416-28316435 | Msa0112790:intron | 30.0% | |
| CAGATTCCCTACAATAATTA+TGG | - | chr1_3:28316425-28316444 | None:intergenic | 30.0% | |
| TTATTGTAGGGAATCTGTTT+CGG | + | chr1_3:28316428-28316447 | Msa0112790:intron | 30.0% | |
| CTTAAGGTCATCTAATAAAC+TGG | - | chr1_3:28316462-28316481 | None:intergenic | 30.0% | |
| AACTTATGCAAATTACATGC+AGG | + | chr1_3:28316523-28316542 | Msa0112790:intron | 30.0% | |
| AAATGGTACAAGTCAATTAC+CGG | - | chr1_3:28316616-28316635 | None:intergenic | 30.0% | |
| !! | TGACTTGTACCATTTTGTTA+AGG | + | chr1_3:28316621-28316640 | Msa0112790:intron | 30.0% |
| ! | TTCACTAACTCTTTTGATGT+AGG | - | chr1_3:28316832-28316851 | None:intergenic | 30.0% |
| AAAAGAGTTAGTGAAGAAAC+TGG | + | chr1_3:28316837-28316856 | Msa0112790:CDS | 30.0% | |
| ! | TTTAGTTTACTTGATGTGCA+AGG | + | chr1_3:28317059-28317078 | Msa0112790:three_prime_UTR | 30.0% |
| ! | GAGACTAGATAGAATTTTAG+AGG | + | chr1_3:28317087-28317106 | Msa0112790:three_prime_UTR | 30.0% |
| !! | ACTAGATAGAATTTTAGAGG+TGG | + | chr1_3:28317090-28317109 | Msa0112790:three_prime_UTR | 30.0% |
| CAGGAAAGAAAAACAGAATA+GGG | - | chr1_3:28317137-28317156 | None:intergenic | 30.0% | |
| ! | GGAAATCAGTTTTCAAAAGA+AGG | - | chr1_3:28317222-28317241 | None:intergenic | 30.0% |
| CTAGTACTTACAACTTAGAA+GGG | - | chr1_3:28317243-28317262 | None:intergenic | 30.0% | |
| CTTCTAAGTTGTAAGTACTA+GGG | + | chr1_3:28317242-28317261 | Msa0112790:three_prime_UTR | 30.0% | |
| TTCTAAGTTGTAAGTACTAG+GGG | + | chr1_3:28317243-28317262 | Msa0112790:three_prime_UTR | 30.0% | |
| !! | TAAGAGTGTCAAAGTTCAAG+AGG | + | chr1_3:28314208-28314227 | Msa0112790:CDS | 35.0% |
| !! | AAGAGTGTCAAAGTTCAAGA+GGG | + | chr1_3:28314209-28314228 | Msa0112790:CDS | 35.0% |
| !! | TGATAACTACTTTTCTTGCC+AGG | - | chr1_3:28314258-28314277 | None:intergenic | 35.0% |
| GACCCAACTGAAATATACAA+AGG | - | chr1_3:28314451-28314470 | None:intergenic | 35.0% | |
| ! | ATTGATCTAGTTTATGGAGG+AGG | + | chr1_3:28314746-28314765 | Msa0112790:CDS | 35.0% |
| GACAAATAAACCAGTGTCAA+TGG | - | chr1_3:28314926-28314945 | None:intergenic | 35.0% | |
| CTGTTCCATTTCTTATCCAT+TGG | + | chr1_3:28315386-28315405 | Msa0112790:intron | 35.0% | |
| AGGATCCAATGGATAAGAAA+TGG | - | chr1_3:28315394-28315413 | None:intergenic | 35.0% | |
| TCTGTAATGCAACCAAAGTA+AGG | - | chr1_3:28315551-28315570 | None:intergenic | 35.0% | |
| AAAGACTGAGATATGGTCAA+TGG | - | chr1_3:28315631-28315650 | None:intergenic | 35.0% | |
| ! | GCTTTGACTCTGAAAAACTA+TGG | + | chr1_3:28315940-28315959 | Msa0112790:intron | 35.0% |
| TCTGAAAAACTATGGTTCTC+TGG | + | chr1_3:28315948-28315967 | Msa0112790:intron | 35.0% | |
| ACAAAAACGTCATGATTCCA+AGG | - | chr1_3:28316002-28316021 | None:intergenic | 35.0% | |
| CACTATTTCATGACATGTAC+AGG | - | chr1_3:28316107-28316126 | None:intergenic | 35.0% | |
| ACTTGTCATTCACTCTTTCT+TGG | + | chr1_3:28316220-28316239 | Msa0112790:intron | 35.0% | |
| CTTGTCATTCACTCTTTCTT+GGG | + | chr1_3:28316221-28316240 | Msa0112790:intron | 35.0% | |
| CTGTGTGCCATAATTATTGT+AGG | + | chr1_3:28316415-28316434 | Msa0112790:intron | 35.0% | |
| TGCAAAAAACATAGGAGAAC+AGG | - | chr1_3:28316489-28316508 | None:intergenic | 35.0% | |
| TTATGCAAATTACATGCAGG+TGG | + | chr1_3:28316526-28316545 | Msa0112790:intron | 35.0% | |
| AAATTACATGCAGGTGGTTA+TGG | + | chr1_3:28316532-28316551 | Msa0112790:intron | 35.0% | |
| AATTACATGCAGGTGGTTAT+GGG | + | chr1_3:28316533-28316552 | Msa0112790:intron | 35.0% | |
| !! | TAGGTGCTGATACAATTATG+TGG | - | chr1_3:28316813-28316832 | None:intergenic | 35.0% |
| CCAGGAAAGAAAAACAGAAT+AGG | - | chr1_3:28317138-28317157 | None:intergenic | 35.0% | |
| !! | CCTATTCTGTTTTTCTTTCC+TGG | + | chr1_3:28317135-28317154 | Msa0112790:three_prime_UTR | 35.0% |
| CCTAGTACTTACAACTTAGA+AGG | - | chr1_3:28317244-28317263 | None:intergenic | 35.0% | |
| CCTTCTAAGTTGTAAGTACT+AGG | + | chr1_3:28317241-28317260 | Msa0112790:three_prime_UTR | 35.0% | |
| TCTAAGTTGTAAGTACTAGG+GGG | + | chr1_3:28317244-28317263 | Msa0112790:three_prime_UTR | 35.0% | |
| ! | AAGAGGGTTTGTGTCTTTTG+TGG | + | chr1_3:28314225-28314244 | Msa0112790:CDS | 40.0% |
| ! | TTTTGTGGATGGGGTGAAAA+TGG | + | chr1_3:28314388-28314407 | Msa0112790:intron | 40.0% |
| !! | AAGCATTGGTCTAATGGGTT+CGG | + | chr1_3:28314769-28314788 | Msa0112790:CDS | 40.0% |
| GTTTCACAAGCTGTTCATGA+TGG | + | chr1_3:28314791-28314810 | Msa0112790:CDS | 40.0% | |
| ! | ATGGTGGAAGACATGTCATA+GGG | + | chr1_3:28314810-28314829 | Msa0112790:CDS | 40.0% |
| ATCTCTTTGTCCATTGACAC+TGG | + | chr1_3:28314913-28314932 | Msa0112790:intron | 40.0% | |
| ! | CTTTTCTCACATACCTCTCT+AGG | - | chr1_3:28314990-28315009 | None:intergenic | 40.0% |
| TTCAGTGGCTTATAATGTGC+TGG | + | chr1_3:28315276-28315295 | Msa0112790:intron | 40.0% | |
| TAGCTGCAAAAAGGATCCAA+TGG | - | chr1_3:28315405-28315424 | None:intergenic | 40.0% | |
| TTCACCAGTTAGCTGCAAAA+AGG | - | chr1_3:28315414-28315433 | None:intergenic | 40.0% | |
| TTTGCAGCTAACTGGTGAAA+CGG | + | chr1_3:28315415-28315434 | Msa0112790:intron | 40.0% | |
| CTGTAGCAGATATGCATCAA+AGG | + | chr1_3:28315453-28315472 | Msa0112790:CDS | 40.0% | |
| AGCAGATATGCATCAAAGGA+AGG | + | chr1_3:28315457-28315476 | Msa0112790:CDS | 40.0% | |
| ! | GATGCTTTTATTGCCTTACC+AGG | + | chr1_3:28315500-28315519 | Msa0112790:CDS | 40.0% |
| ! | GGTGTACTATTCTTTAGCTC+AGG | - | chr1_3:28315530-28315549 | None:intergenic | 40.0% |
| AGAGAGTGACTCTTCAAAAC+TGG | + | chr1_3:28315865-28315884 | Msa0112790:intron | 40.0% | |
| GGTGATAAGGGGTCTTAATT+TGG | + | chr1_3:28316275-28316294 | Msa0112790:intron | 40.0% | |
| !! | TGACCATTGGTTTAGATCGA+AGG | + | chr1_3:28316378-28316397 | Msa0112790:intron | 40.0% |
| !! | GACCATTGGTTTAGATCGAA+GGG | + | chr1_3:28316379-28316398 | Msa0112790:intron | 40.0% |
| TAGGAGAACAGGAACACTTA+AGG | - | chr1_3:28316478-28316497 | None:intergenic | 40.0% | |
| AGCTTCTTGAAGTCATAACC+TGG | + | chr1_3:28316566-28316585 | Msa0112790:CDS | 40.0% | |
| GCTTCTTGAAGTCATAACCT+GGG | + | chr1_3:28316567-28316586 | Msa0112790:CDS | 40.0% | |
| ACTTGGGATTCATGACAAAC+CGG | + | chr1_3:28316594-28316613 | Msa0112790:CDS | 40.0% | |
| ! | GTGGGACTAGTAAATGTTGA+TGG | + | chr1_3:28316718-28316737 | Msa0112790:CDS | 40.0% |
| TTCATTCATCGACAAAGCTG+TGG | + | chr1_3:28316759-28316778 | Msa0112790:CDS | 40.0% | |
| AGAGTTAGTGAAGAAACTGG+AGG | + | chr1_3:28316840-28316859 | Msa0112790:CDS | 40.0% | |
| GATTATGTTCCTTGTCACGA+AGG | + | chr1_3:28316956-28316975 | Msa0112790:CDS | 40.0% | |
| GATGTCATACTCTTCAGGAT+AGG | - | chr1_3:28317023-28317042 | None:intergenic | 40.0% | |
| CTTGAGATGTCATACTCTTC+AGG | - | chr1_3:28317028-28317047 | None:intergenic | 40.0% | |
| ! | CTGAAGAGTATGACATCTCA+AGG | + | chr1_3:28317026-28317045 | Msa0112790:CDS | 40.0% |
| ! | GTCTTTTGTGGAAGTAGTCC+TGG | + | chr1_3:28314237-28314256 | Msa0112790:CDS | 45.0% |
| CAAGATGCTGCCATTGAACT+TGG | + | chr1_3:28314276-28314295 | Msa0112790:CDS | 45.0% | |
| ! | GTTTATGGAGGAGGAAGCAT+TGG | + | chr1_3:28314755-28314774 | Msa0112790:CDS | 45.0% |
| !! | AGGAGGAAGCATTGGTCTAA+TGG | + | chr1_3:28314763-28314782 | Msa0112790:CDS | 45.0% |
| !! | GGAGGAAGCATTGGTCTAAT+GGG | + | chr1_3:28314764-28314783 | Msa0112790:CDS | 45.0% |
| TCACAAGCTGTTCATGATGG+TGG | + | chr1_3:28314794-28314813 | Msa0112790:CDS | 45.0% | |
| !! | GATGGTGGAAGACATGTCAT+AGG | + | chr1_3:28314809-28314828 | Msa0112790:CDS | 45.0% |
| TCTCTAGGCATGAGTGTCTT+GGG | - | chr1_3:28314975-28314994 | None:intergenic | 45.0% | |
| ! | GGATCCTTTTTGCAGCTAAC+TGG | + | chr1_3:28315407-28315426 | Msa0112790:intron | 45.0% |
| ! | TTCTTTAGCTCAGGCTAACC+TGG | - | chr1_3:28315521-28315540 | None:intergenic | 45.0% |
| GCCTGAGACCCTAACATATT+TGG | + | chr1_3:28315902-28315921 | Msa0112790:intron | 45.0% | |
| GCCAAATATGTTAGGGTCTC+AGG | - | chr1_3:28315906-28315925 | None:intergenic | 45.0% | |
| AGTGACTGTTACAGAAGGCA+AGG | + | chr1_3:28316185-28316204 | Msa0112790:intron | 45.0% | |
| CTCTTCCCTCTATCTTGCAA+GGG | - | chr1_3:28316249-28316268 | None:intergenic | 45.0% | |
| TCTCTTCCCTCTATCTTGCA+AGG | - | chr1_3:28316250-28316269 | None:intergenic | 45.0% | |
| AAGATAGAGGGAAGAGAGAG+AGG | + | chr1_3:28316253-28316272 | Msa0112790:intron | 45.0% | |
| AGATAGAGGGAAGAGAGAGA+GGG | + | chr1_3:28316254-28316273 | Msa0112790:intron | 45.0% | |
| GAAGAGAGAGAGGGTGATAA+GGG | + | chr1_3:28316263-28316282 | Msa0112790:intron | 45.0% | |
| AAGAGAGAGAGGGTGATAAG+GGG | + | chr1_3:28316264-28316283 | Msa0112790:intron | 45.0% | |
| GACCCTTCGATCTAAACCAA+TGG | - | chr1_3:28316384-28316403 | None:intergenic | 45.0% | |
| GACTTCAAGAAGCTCCTCTA+GGG | - | chr1_3:28316560-28316579 | None:intergenic | 45.0% | |
| TGACTTCAAGAAGCTCCTCT+AGG | - | chr1_3:28316561-28316580 | None:intergenic | 45.0% | |
| TCATAACCTGGGCTCAACTT+GGG | + | chr1_3:28316578-28316597 | Msa0112790:CDS | 45.0% | |
| TTTGACATTCCACAACTCGC+AGG | + | chr1_3:28316696-28316715 | Msa0112790:intron | 45.0% | |
| ATCGACAAAGCTGTGGAAGA+GGG | + | chr1_3:28316766-28316785 | Msa0112790:CDS | 45.0% | |
| ACAATTATGTGGCGCGCATT+TGG | - | chr1_3:28316802-28316821 | None:intergenic | 45.0% | |
| GAGGTGGAAAGAAGCTATTG+TGG | + | chr1_3:28317106-28317125 | Msa0112790:three_prime_UTR | 45.0% | |
| !!! | AATATAAATTTTTTGTTTTT+TGG | + | chr1_3:28314538-28314557 | Msa0112790:intron | 5.0% |
| !!! | TATTTTTTTTTTTATATCTA+TGG | + | chr1_3:28314616-28314635 | Msa0112790:intron | 5.0% |
| CTCTCTAGGCATGAGTGTCT+TGG | - | chr1_3:28314976-28314995 | None:intergenic | 50.0% | |
| CAAGACACTCATGCCTAGAG+AGG | + | chr1_3:28314974-28314993 | Msa0112790:CDS | 50.0% | |
| CAGCTAACTGGTGAAACGGT+GGG | + | chr1_3:28315419-28315438 | Msa0112790:intron | 50.0% | |
| GCATCAAAGGAAGGCAGAGA+TGG | + | chr1_3:28315466-28315485 | Msa0112790:CDS | 50.0% | |
| TAGCTCAGGCTAACCTGGTA+AGG | - | chr1_3:28315516-28315535 | None:intergenic | 50.0% | |
| TTAGGGTCTCAGGCAAAGTC+AGG | - | chr1_3:28315896-28315915 | None:intergenic | 50.0% | |
| TGGGATCCCTTGCAAGATAG+AGG | + | chr1_3:28316240-28316259 | Msa0112790:intron | 50.0% | |
| GGGATCCCTTGCAAGATAGA+GGG | + | chr1_3:28316241-28316260 | Msa0112790:intron | 50.0% | |
| GGAAGAGAGAGAGGGTGATA+AGG | + | chr1_3:28316262-28316281 | Msa0112790:intron | 50.0% | |
| GTCATAACCTGGGCTCAACT+TGG | + | chr1_3:28316577-28316596 | Msa0112790:CDS | 50.0% | |
| ! | ATGAATCCCAAGTTGAGCCC+AGG | - | chr1_3:28316587-28316606 | None:intergenic | 50.0% |
| ACATTCCACAACTCGCAGGT+GGG | + | chr1_3:28316700-28316719 | Msa0112790:intron | 50.0% | |
| CATCGACAAAGCTGTGGAAG+AGG | + | chr1_3:28316765-28316784 | Msa0112790:CDS | 50.0% | |
| TTCGAAGTTGAGCTGGCAGA+TGG | + | chr1_3:28316985-28317004 | Msa0112790:CDS | 50.0% | |
| GCAGCTAACTGGTGAAACGG+TGG | + | chr1_3:28315418-28315437 | Msa0112790:intron | 55.0% | |
| AGGTGGTTATGGGACCCTAG+AGG | + | chr1_3:28316543-28316562 | Msa0112790:intron | 55.0% | |
| GACATTCCACAACTCGCAGG+TGG | + | chr1_3:28316699-28316718 | Msa0112790:intron | 55.0% | |
| GAAGCAACGCCTTCGTGACA+AGG | - | chr1_3:28316968-28316987 | None:intergenic | 55.0% | |
| GCGTTGCTTCGAAGTTGAGC+TGG | + | chr1_3:28316978-28316997 | Msa0112790:CDS | 55.0% | |
| CTAGTCCCACCTGCGAGTTG+TGG | - | chr1_3:28316708-28316727 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 28314023 | 28317330 | 28314023 | ID=Msa0112790;Name=Msa0112790 |
| chr1_3 | mRNA | 28314023 | 28317330 | 28314023 | ID=Msa0112790-mRNA-1;Parent=Msa0112790;Name=Msa0112790-mRNA-1;_AED=0.10;_eAED=0.10;_QI=166|1|1|1|1|1|7|279|219 |
| chr1_3 | exon | 28314023 | 28314308 | 28314023 | ID=Msa0112790-mRNA-1:exon:9321;Parent=Msa0112790-mRNA-1 |
| chr1_3 | exon | 28314734 | 28314831 | 28314734 | ID=Msa0112790-mRNA-1:exon:9322;Parent=Msa0112790-mRNA-1 |
| chr1_3 | exon | 28314965 | 28314995 | 28314965 | ID=Msa0112790-mRNA-1:exon:9323;Parent=Msa0112790-mRNA-1 |
| chr1_3 | exon | 28315422 | 28315521 | 28315422 | ID=Msa0112790-mRNA-1:exon:9324;Parent=Msa0112790-mRNA-1 |
| chr1_3 | exon | 28316545 | 28316615 | 28316545 | ID=Msa0112790-mRNA-1:exon:9325;Parent=Msa0112790-mRNA-1 |
| chr1_3 | exon | 28316718 | 28316861 | 28316718 | ID=Msa0112790-mRNA-1:exon:9326;Parent=Msa0112790-mRNA-1 |
| chr1_3 | exon | 28316956 | 28317330 | 28316956 | ID=Msa0112790-mRNA-1:exon:9327;Parent=Msa0112790-mRNA-1 |
| chr1_3 | five_prime_UTR | 28314023 | 28314188 | 28314023 | ID=Msa0112790-mRNA-1:five_prime_utr;Parent=Msa0112790-mRNA-1 |
| chr1_3 | CDS | 28314189 | 28314308 | 28314189 | ID=Msa0112790-mRNA-1:cds;Parent=Msa0112790-mRNA-1 |
| chr1_3 | CDS | 28314734 | 28314831 | 28314734 | ID=Msa0112790-mRNA-1:cds;Parent=Msa0112790-mRNA-1 |
| chr1_3 | CDS | 28314965 | 28314995 | 28314965 | ID=Msa0112790-mRNA-1:cds;Parent=Msa0112790-mRNA-1 |
| chr1_3 | CDS | 28315422 | 28315521 | 28315422 | ID=Msa0112790-mRNA-1:cds;Parent=Msa0112790-mRNA-1 |
| chr1_3 | CDS | 28316545 | 28316615 | 28316545 | ID=Msa0112790-mRNA-1:cds;Parent=Msa0112790-mRNA-1 |
| chr1_3 | CDS | 28316718 | 28316861 | 28316718 | ID=Msa0112790-mRNA-1:cds;Parent=Msa0112790-mRNA-1 |
| chr1_3 | CDS | 28316956 | 28317051 | 28316956 | ID=Msa0112790-mRNA-1:cds;Parent=Msa0112790-mRNA-1 |
| chr1_3 | three_prime_UTR | 28317052 | 28317330 | 28317052 | ID=Msa0112790-mRNA-1:three_prime_utr;Parent=Msa0112790-mRNA-1 |
| Gene Sequence |
| Protein sequence |
