Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0246290 | XP_003595315.1 | 97.443 | 352 | 9 | 0 | 1 | 352 | 1 | 352 | 0.0 | 701 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0246290 | sp|Q9SD07|SSL4_ARATH | 30.579 | 363 | 219 | 12 | 6 | 349 | 13 | 361 | 6.80e-48 | 168 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0246290 | G7IGG4 | 97.443 | 352 | 9 | 0 | 1 | 352 | 1 | 352 | 0.0 | 701 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0050730 | Msa0246290 | 0.835822 | 1.341265e-56 | -8.615850e-47 |
| Msa0050760 | Msa0246290 | 0.815473 | 9.082165e-52 | -8.615850e-47 |
| Msa0105420 | Msa0246290 | 0.808804 | 2.587076e-50 | -8.615850e-47 |
| Msa0191190 | Msa0246290 | 0.800363 | 1.492663e-48 | -8.615850e-47 |
| Msa0203170 | Msa0246290 | 0.817084 | 3.960616e-52 | -8.615850e-47 |
| Msa0227510 | Msa0246290 | 0.802155 | 6.414769e-49 | -8.615850e-47 |
| Msa0246290 | Msa0284860 | 0.843195 | 1.626638e-58 | -8.615850e-47 |
| Msa0246290 | Msa0292180 | 0.803048 | 4.198885e-49 | -8.615850e-47 |
| Msa0246290 | Msa0335040 | 0.816301 | 5.934818e-52 | -8.615850e-47 |
| Msa0246290 | Msa0517340 | 0.800738 | 1.252044e-48 | -8.615850e-47 |
| Msa0246290 | Msa0524200 | -0.804272 | 2.339330e-49 | -8.615850e-47 |
| Msa0246290 | Msa0610590 | 0.800094 | 1.693271e-48 | -8.615850e-47 |
| Msa0246290 | Msa0611550 | 0.802693 | 4.969743e-49 | -8.615850e-47 |
| Msa0246290 | Msa0622340 | 0.828276 | 9.838285e-55 | -8.615850e-47 |
| Msa0246290 | Msa0651190 | 0.801642 | 8.175563e-49 | -8.615850e-47 |
| Msa0246290 | Msa0694250 | 0.819948 | 8.879884e-53 | -8.615850e-47 |
| Msa0246290 | Msa0782330 | 0.810326 | 1.218841e-50 | -8.615850e-47 |
| Msa0246290 | Msa0908170 | 0.829548 | 4.840554e-55 | -8.615850e-47 |
| Msa0246290 | Msa0920550 | 0.818962 | 1.490228e-52 | -8.615850e-47 |
| Msa0246290 | Msa0960160 | 0.800662 | 1.297386e-48 | -8.615850e-47 |
| Msa0246290 | Msa0993530 | 0.800302 | 1.536156e-48 | -8.615850e-47 |
| Msa0246290 | Msa1218650 | 0.827607 | 1.425230e-54 | -8.615850e-47 |
| Msa0246290 | Msa1363890 | 0.811566 | 6.568125e-51 | -8.615850e-47 |
| Msa0246290 | Msa1367390 | -0.805100 | 1.571277e-49 | -8.615850e-47 |
| Msa0246290 | Msa1419110 | 0.833686 | 4.625171e-56 | -8.615850e-47 |
| Msa0246290 | Msa1439230 | 0.832668 | 8.290862e-56 | -8.615850e-47 |
| Msa0246290 | Msa1440600 | 0.818814 | 1.610729e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0246290 | MtrunA17_Chr2g0300851 | 97.443 | 352 | 9 | 0 | 1 | 352 | 1 | 352 | 0.0 | 701 |
| Msa0246290 | MtrunA17_Chr2g0300841 | 87.535 | 353 | 40 | 2 | 4 | 352 | 8 | 360 | 0.0 | 627 |
| Msa0246290 | MtrunA17_Chr2g0300861 | 83.662 | 355 | 55 | 1 | 1 | 352 | 17 | 371 | 0.0 | 606 |
| Msa0246290 | MtrunA17_Chr8g0370791 | 31.638 | 354 | 225 | 11 | 6 | 350 | 22 | 367 | 3.63e-53 | 179 |
| Msa0246290 | MtrunA17_Chr8g0370761 | 31.638 | 354 | 225 | 11 | 6 | 350 | 22 | 367 | 2.47e-49 | 169 |
| Msa0246290 | MtrunA17_Chr8g0370771 | 31.915 | 235 | 153 | 5 | 117 | 350 | 4 | 232 | 7.67e-36 | 130 |
| Msa0246290 | MtrunA17_Chr4g0025341 | 30.545 | 275 | 164 | 6 | 91 | 349 | 128 | 391 | 3.67e-34 | 129 |
| Msa0246290 | MtrunA17_Chr2g0329531 | 27.562 | 283 | 193 | 6 | 77 | 348 | 124 | 405 | 5.40e-31 | 121 |
| Msa0246290 | MtrunA17_Chr7g0256591 | 30.435 | 253 | 160 | 6 | 107 | 347 | 136 | 384 | 1.38e-30 | 120 |
| Msa0246290 | MtrunA17_Chr7g0256601 | 29.600 | 250 | 166 | 5 | 107 | 347 | 167 | 415 | 4.86e-30 | 119 |
| Msa0246290 | MtrunA17_Chr7g0256571 | 27.005 | 374 | 241 | 12 | 3 | 349 | 1 | 369 | 9.59e-30 | 117 |
| Msa0246290 | MtrunA17_Chr7g0256581 | 26.963 | 382 | 228 | 11 | 5 | 349 | 2 | 369 | 2.83e-29 | 115 |
| Msa0246290 | MtrunA17_Chr2g0322241 | 29.008 | 262 | 157 | 6 | 105 | 349 | 146 | 395 | 3.72e-29 | 116 |
| Msa0246290 | MtrunA17_Chr7g0256561 | 29.032 | 248 | 136 | 4 | 105 | 349 | 125 | 335 | 4.63e-25 | 103 |
| Msa0246290 | MtrunA17_Chr4g0062001 | 29.675 | 246 | 149 | 8 | 105 | 347 | 110 | 334 | 6.10e-25 | 103 |
| Msa0246290 | MtrunA17_Chr8g0376581 | 28.862 | 246 | 149 | 8 | 105 | 347 | 108 | 330 | 4.49e-24 | 100 |
| Msa0246290 | MtrunA17_Chr5g0443561 | 27.835 | 291 | 159 | 7 | 70 | 349 | 73 | 323 | 1.48e-21 | 94.0 |
| Msa0246290 | MtrunA17_Chr4g0062021 | 27.459 | 244 | 149 | 9 | 109 | 347 | 126 | 346 | 1.84e-20 | 90.9 |
| Msa0246290 | MtrunA17_Chr4g0020271 | 28.218 | 202 | 123 | 7 | 139 | 339 | 1 | 181 | 2.43e-19 | 85.1 |
| Msa0246290 | MtrunA17_Chr4g0062031 | 32.530 | 166 | 105 | 4 | 105 | 264 | 109 | 273 | 3.81e-19 | 87.0 |
| Msa0246290 | MtrunA17_Chr8g0370801 | 34.906 | 106 | 64 | 1 | 116 | 216 | 2 | 107 | 7.41e-19 | 80.9 |
| Msa0246290 | MtrunA17_Chr2g0307721 | 32.704 | 159 | 100 | 5 | 107 | 260 | 120 | 276 | 7.20e-18 | 85.1 |
| Msa0246290 | MtrunA17_Chr2g0307721 | 33.121 | 157 | 98 | 5 | 109 | 260 | 574 | 728 | 9.37e-15 | 75.5 |
| Msa0246290 | MtrunA17_Chr4g0061871 | 39.286 | 84 | 50 | 1 | 177 | 260 | 31 | 113 | 1.26e-13 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0246290 | AT3G51420.1 | 30.579 | 363 | 219 | 12 | 6 | 349 | 13 | 361 | 6.92e-49 | 168 |
| Msa0246290 | AT3G51430.2 | 30.252 | 357 | 210 | 10 | 15 | 349 | 20 | 359 | 4.52e-48 | 166 |
| Msa0246290 | AT3G51430.1 | 30.168 | 358 | 211 | 10 | 15 | 349 | 20 | 361 | 5.91e-48 | 166 |
| Msa0246290 | AT3G51440.1 | 34.202 | 307 | 168 | 10 | 50 | 339 | 62 | 351 | 2.29e-46 | 162 |
| Msa0246290 | AT3G51450.1 | 30.295 | 373 | 215 | 13 | 4 | 349 | 7 | 361 | 3.30e-42 | 151 |
| Msa0246290 | AT5G22020.3 | 27.528 | 356 | 222 | 11 | 25 | 349 | 45 | 395 | 1.82e-31 | 122 |
| Msa0246290 | AT5G22020.1 | 27.528 | 356 | 222 | 11 | 25 | 349 | 45 | 395 | 1.82e-31 | 122 |
| Msa0246290 | AT5G22020.2 | 27.528 | 356 | 222 | 11 | 25 | 349 | 45 | 395 | 1.82e-31 | 122 |
| Msa0246290 | AT1G08470.1 | 31.250 | 256 | 159 | 6 | 105 | 349 | 140 | 389 | 4.60e-31 | 121 |
| Msa0246290 | AT3G57030.1 | 30.556 | 252 | 167 | 4 | 105 | 349 | 124 | 374 | 6.06e-31 | 120 |
| Msa0246290 | AT3G57020.2 | 29.333 | 300 | 186 | 11 | 58 | 339 | 54 | 345 | 1.23e-30 | 119 |
| Msa0246290 | AT3G59530.3 | 30.126 | 239 | 159 | 5 | 88 | 319 | 141 | 378 | 6.73e-30 | 118 |
| Msa0246290 | AT3G59530.2 | 30.126 | 239 | 159 | 5 | 88 | 319 | 141 | 378 | 6.73e-30 | 118 |
| Msa0246290 | AT3G59530.1 | 30.126 | 239 | 159 | 5 | 88 | 319 | 141 | 378 | 6.73e-30 | 118 |
| Msa0246290 | AT3G57020.1 | 30.350 | 257 | 155 | 9 | 99 | 339 | 111 | 359 | 8.20e-29 | 115 |
| Msa0246290 | AT3G57010.1 | 30.612 | 245 | 157 | 9 | 105 | 339 | 119 | 360 | 1.16e-27 | 112 |
| Msa0246290 | AT2G41300.1 | 29.600 | 250 | 165 | 8 | 99 | 339 | 136 | 383 | 6.82e-26 | 107 |
| Msa0246290 | AT2G41290.1 | 30.075 | 266 | 169 | 8 | 99 | 349 | 113 | 376 | 4.51e-25 | 104 |
| Msa0246290 | AT1G74010.1 | 26.415 | 318 | 170 | 10 | 58 | 345 | 38 | 321 | 6.07e-19 | 86.7 |
| Msa0246290 | AT1G74000.1 | 24.611 | 321 | 173 | 11 | 58 | 345 | 41 | 325 | 7.75e-18 | 83.6 |
| Msa0246290 | AT1G74020.1 | 26.562 | 256 | 144 | 8 | 105 | 350 | 107 | 328 | 3.47e-17 | 82.0 |
Find 79 sgRNAs with CRISPR-Local
Find 249 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAATTGTGTAAACCAAATT+TGG | 0.170078 | 2_2:-27429414 | None:intergenic |
| GCTTGAGGTTAGTGCCATTT+TGG | 0.229465 | 2_2:-27426358 | None:intergenic |
| GAATGGTTAGGAATGGAAAT+TGG | 0.237351 | 2_2:+27426703 | Msa0246290:CDS |
| CGTTATTGTCCTTGATGATT+TGG | 0.257134 | 2_2:+27429505 | Msa0246290:CDS |
| GTTATCCTTTCACAAGTAAA+TGG | 0.270520 | 2_2:+27427020 | Msa0246290:CDS |
| CCTTCCTTTGTGCACCAAAA+TGG | 0.287411 | 2_2:+27426344 | Msa0246290:exon |
| CACGAGATAATCTTCATCTT+TGG | 0.299202 | 2_2:-27429552 | None:intergenic |
| TTATCCACACAAACATCTTC+TGG | 0.304876 | 2_2:-27426636 | None:intergenic |
| TTGCTCCTGATGGCTCATTC+TGG | 0.309987 | 2_2:+27429821 | Msa0246290:CDS |
| TGTCTGAAACATTGGCTAAA+AGG | 0.318273 | 2_2:+27429733 | Msa0246290:CDS |
| TTCAAGAGAAACTGGATCTA+TGG | 0.319662 | 2_2:-27426433 | None:intergenic |
| CCAAATTTGGTTTACACAAT+TGG | 0.329548 | 2_2:+27429414 | Msa0246290:CDS |
| AGTGTACCAAGTACCAAATT+TGG | 0.334316 | 2_2:+27429401 | Msa0246290:CDS |
| GGAATGGAAATTGGGAGAAT+TGG | 0.337340 | 2_2:+27426712 | Msa0246290:CDS |
| AATAAAGCTACGAAGTGTTT+TGG | 0.341284 | 2_2:-27430578 | None:intergenic |
| ATTCTGGATCGCTTTGATTC+AGG | 0.356295 | 2_2:+27429837 | Msa0246290:CDS |
| AGTGGTATTTCAAGAGAAAC+TGG | 0.369140 | 2_2:-27426441 | None:intergenic |
| GTCTTAATACTGACTTTGTT+GGG | 0.387123 | 2_2:+27430762 | Msa0246290:CDS |
| GATTTAGGTGTCTGAAACAT+TGG | 0.389467 | 2_2:+27429725 | Msa0246290:intron |
| CATCTCTTGTAGCTGTATAT+AGG | 0.396008 | 2_2:-27426668 | None:intergenic |
| ATAGATAGCTCTTCTTTGCT+TGG | 0.400675 | 2_2:+27426741 | Msa0246290:CDS |
| GGAGCAAGATTAATGTTATC+AGG | 0.407899 | 2_2:-27429805 | None:intergenic |
| TGTAAACCAAATTTGGTACT+TGG | 0.414925 | 2_2:-27429407 | None:intergenic |
| TAATAGAGTGTGATTAAACT+TGG | 0.423287 | 2_2:+27426594 | Msa0246290:intron |
| TTACTAAAGGTTACGGAAGA+TGG | 0.426711 | 2_2:+27426990 | Msa0246290:CDS |
| CGTAGCTTTATTTCCAAGGC+TGG | 0.429510 | 2_2:+27430589 | Msa0246290:CDS |
| ATCTCGTGGTTTGTGAAACT+TGG | 0.430142 | 2_2:+27429567 | Msa0246290:CDS |
| TTAATCATGTTAACCAGCCT+TGG | 0.434131 | 2_2:-27430602 | None:intergenic |
| AATGGTTAGGAATGGAAATT+GGG | 0.437047 | 2_2:+27426704 | Msa0246290:CDS |
| AGTCTTAATACTGACTTTGT+TGG | 0.447028 | 2_2:+27430761 | Msa0246290:CDS |
| AGATGGTTGGATTAAAAGAA+TGG | 0.447747 | 2_2:+27426686 | Msa0246290:CDS |
| GTTGGATTAAAAGAATGGTT+AGG | 0.454450 | 2_2:+27426691 | Msa0246290:CDS |
| TTTGAGAACAATCTTTACTT+AGG | 0.457589 | 2_2:+27430737 | Msa0246290:CDS |
| GCAGGGTTTACTAAAGGTTA+CGG | 0.469389 | 2_2:+27426983 | Msa0246290:intron |
| TTTATTGAAAACCTTCCAGC+TGG | 0.472305 | 2_2:+27429781 | Msa0246290:CDS |
| TATTATGCAGGGTTTACTAA+AGG | 0.479194 | 2_2:+27426977 | Msa0246290:intron |
| AACATTAATCTTGCTCCTGA+TGG | 0.489893 | 2_2:+27429811 | Msa0246290:CDS |
| CATTGTTTGTGATACTACCT+TGG | 0.491818 | 2_2:+27426791 | Msa0246290:CDS |
| GAGAACCATTTACTTGTGAA+AGG | 0.496653 | 2_2:-27427025 | None:intergenic |
| GCGATCCAGAATGAGCCATC+AGG | 0.499792 | 2_2:-27429826 | None:intergenic |
| ATTAAAAGAATGGTTAGGAA+TGG | 0.506704 | 2_2:+27426696 | Msa0246290:CDS |
| GATGATTTGGCCTTTGCCAA+TGG | 0.513304 | 2_2:+27429518 | Msa0246290:CDS |
| ACAGGTGACTTCTGAAAGGA+TGG | 0.519353 | 2_2:+27430532 | Msa0246290:intron |
| AAAAGTTTGGTGATAATGAT+GGG | 0.521526 | 2_2:+27430681 | Msa0246290:CDS |
| TCAAGAGAAACTGGATCTAT+GGG | 0.525446 | 2_2:-27426432 | None:intergenic |
| ACTTCGTAGCTTTATTTCCA+AGG | 0.527057 | 2_2:+27430585 | Msa0246290:CDS |
| TTTGGACAGTGCAACACCAT+TGG | 0.529499 | 2_2:-27429534 | None:intergenic |
| CAAATCATCAAGGACAATAA+CGG | 0.530113 | 2_2:-27429504 | None:intergenic |
| TTATTATTCATATCAGTGAC+AGG | 0.532705 | 2_2:-27430943 | None:intergenic |
| TAGTTCTATGCACTTTGCAG+TGG | 0.550550 | 2_2:-27430791 | None:intergenic |
| AGGTGACTTCTGAAAGGATG+GGG | 0.554225 | 2_2:+27430534 | Msa0246290:intron |
| TGTTATCAGGTCCAGCTGGA+AGG | 0.568452 | 2_2:-27429792 | None:intergenic |
| ATACAGCTACAAGAGATGGT+TGG | 0.570015 | 2_2:+27426673 | Msa0246290:CDS |
| GGAATCACTACATCTAAAGA+TGG | 0.570283 | 2_2:+27426762 | Msa0246290:CDS |
| AGTGTGATTAAACTTGGAGA+AGG | 0.571921 | 2_2:+27426600 | Msa0246290:CDS |
| TTAATGTTATCAGGTCCAGC+TGG | 0.572564 | 2_2:-27429796 | None:intergenic |
| TTGGTCGAAGATACAGAAAG+TGG | 0.582391 | 2_2:-27426459 | None:intergenic |
| TAGTGTAACTAAATCTGCAA+TGG | 0.584002 | 2_2:+27430625 | Msa0246290:CDS |
| CTATATACAGCTACAAGAGA+TGG | 0.586350 | 2_2:+27426669 | Msa0246290:CDS |
| GTGCTTGAGGCAAGACCACA+TGG | 0.588367 | 2_2:+27429446 | Msa0246290:CDS |
| AATGGCACTAACCTCAAGCT+TGG | 0.590599 | 2_2:+27426362 | Msa0246290:exon |
| TGGCAAAGGCCAAATCATCA+AGG | 0.590889 | 2_2:-27429514 | None:intergenic |
| GATATAATAGAAGCATCAGA+TGG | 0.591142 | 2_2:+27429365 | Msa0246290:CDS |
| CAGGTGACTTCTGAAAGGAT+GGG | 0.601280 | 2_2:+27430533 | Msa0246290:intron |
| ATAACGGTTTCATTTGACAT+GGG | 0.603716 | 2_2:-27429488 | None:intergenic |
| AATAACGGTTTCATTTGACA+TGG | 0.605627 | 2_2:-27429489 | None:intergenic |
| GATGTTTGTGTGGATAAAGA+TGG | 0.610609 | 2_2:+27426642 | Msa0246290:CDS |
| CAGTGCAACACCATTGGCAA+AGG | 0.613191 | 2_2:-27429528 | None:intergenic |
| TACCTTAAAAGTTGTCCATG+TGG | 0.628210 | 2_2:-27429461 | None:intergenic |
| TACATGCGATATTAGTTGCG+AGG | 0.630721 | 2_2:+27430966 | Msa0246290:three_prime_UTR |
| TGGCTAAAAGGTATTAACAA+AGG | 0.633072 | 2_2:+27429745 | Msa0246290:CDS |
| CAAAGATGAAGATTATCTCG+TGG | 0.639841 | 2_2:+27429553 | Msa0246290:CDS |
| ATCACTACATCTAAAGATGG+TGG | 0.642182 | 2_2:+27426765 | Msa0246290:CDS |
| TGTAACTAAATCTGCAATGG+TGG | 0.654164 | 2_2:+27430628 | Msa0246290:CDS |
| AGCTGCTAGAACCAAGCTTG+AGG | 0.656502 | 2_2:-27426373 | None:intergenic |
| TGTTACAGGTGACTTCTGAA+AGG | 0.676316 | 2_2:+27430528 | Msa0246290:intron |
| TTGGTATCTAGATGTGCTTG+AGG | 0.682578 | 2_2:+27429433 | Msa0246290:CDS |
| GCAACCAGAAGATGTTTGTG+TGG | 0.684744 | 2_2:+27426632 | Msa0246290:CDS |
| GTGGTGAAAGTGACAACTGA+AGG | 0.697705 | 2_2:+27430647 | Msa0246290:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTTGATTTTTTTTTTGA+AGG | - | chr2_2:27426221-27426240 | None:intergenic | 10.0% |
| !! | ATATATATATATATTAGTAG+AGG | + | chr2_2:27426285-27426304 | Msa0246290:five_prime_UTR | 10.0% |
| !! | TCATAATAAATTATTTGTTT+GGG | - | chr2_2:27427064-27427083 | None:intergenic | 10.0% |
| !! | TTAAAACAAAGTTAAAATAA+AGG | + | chr2_2:27427616-27427635 | Msa0246290:intron | 10.0% |
| !!! | TTTTTAAGTTAAAATTTGTT+TGG | + | chr2_2:27427698-27427717 | Msa0246290:intron | 10.0% |
| !!! | ATGTTTAAAATATTTTTTGA+AGG | + | chr2_2:27427776-27427795 | Msa0246290:intron | 10.0% |
| !!! | TGTTTAAAATATTTTTTGAA+GGG | + | chr2_2:27427777-27427796 | Msa0246290:intron | 10.0% |
| !!! | AACTTGTTAAATATTTAAAT+AGG | + | chr2_2:27427904-27427923 | Msa0246290:intron | 10.0% |
| !! | TAAATTGATAAAAAAAGAAA+AGG | - | chr2_2:27428598-27428617 | None:intergenic | 10.0% |
| !!! | CGTTTTTTTATAATTTTTTT+TGG | + | chr2_2:27428703-27428722 | Msa0246290:intron | 10.0% |
| !!! | ATTATAAATTTCTTTAGTTT+AGG | + | chr2_2:27428797-27428816 | Msa0246290:intron | 10.0% |
| !! | AAATATATTTAGTAAATTTG+TGG | + | chr2_2:27428986-27429005 | Msa0246290:intron | 10.0% |
| !!! | TCATTATAAGATATTTTTTA+AGG | + | chr2_2:27429159-27429178 | Msa0246290:intron | 10.0% |
| !!! | ATTATTTTTTTAATATGGTA+AGG | + | chr2_2:27429297-27429316 | Msa0246290:intron | 10.0% |
| !!! | TTATTTTTTTAATATGGTAA+GGG | + | chr2_2:27429298-27429317 | Msa0246290:intron | 10.0% |
| !!! | ATTTATATTGAAATTTTGAT+TGG | + | chr2_2:27430447-27430466 | Msa0246290:intron | 10.0% |
| !!! | TATAACCAAAATTATTTTTG+CGG | - | chr2_2:27426263-27426282 | None:intergenic | 15.0% |
| !! | CTCATAATAAATTATTTGTT+TGG | - | chr2_2:27427065-27427084 | None:intergenic | 15.0% |
| !! | TGAGTAAATATAATATTTCT+AGG | - | chr2_2:27427833-27427852 | None:intergenic | 15.0% |
| !! | TAAATAGGAGAAATAATTTA+AGG | + | chr2_2:27427919-27427938 | Msa0246290:intron | 15.0% |
| !! | TTTACATTCAAATATTTACA+TGG | + | chr2_2:27428240-27428259 | Msa0246290:intron | 15.0% |
| !! | TGAAAAATATATGAAAATAG+TGG | + | chr2_2:27428263-27428282 | Msa0246290:intron | 15.0% |
| !! | GAAAAATATATGAAAATAGT+GGG | + | chr2_2:27428264-27428283 | Msa0246290:intron | 15.0% |
| !!! | ATAAATGATTATCTATCTTT+TGG | + | chr2_2:27428679-27428698 | Msa0246290:intron | 15.0% |
| !!! | CTTTTTTTTTTTTTTTGAAG+AGG | + | chr2_2:27429108-27429127 | Msa0246290:intron | 15.0% |
| !! | AAACACTTACATATATAAAA+TGG | - | chr2_2:27429186-27429205 | None:intergenic | 15.0% |
| !! | TTAAAAAAATAATCCAAGAA+GGG | - | chr2_2:27429290-27429309 | None:intergenic | 15.0% |
| !! | ATTAAAAAAATAATCCAAGA+AGG | - | chr2_2:27429291-27429310 | None:intergenic | 15.0% |
| !!! | CTTGGATTATTTTTTTAATA+TGG | + | chr2_2:27429292-27429311 | Msa0246290:intron | 15.0% |
| !! | GCTACTAAAAAAAATATTAA+GGG | - | chr2_2:27429890-27429909 | None:intergenic | 15.0% |
| !! | AGCTACTAAAAAAAATATTA+AGG | - | chr2_2:27429891-27429910 | None:intergenic | 15.0% |
| !! | TATATATTAATTGATGTTAC+AGG | + | chr2_2:27430514-27430533 | Msa0246290:intron | 15.0% |
| !!! | TAATCATTTAGGATTTATCT+TGG | - | chr2_2:27426875-27426894 | None:intergenic | 20.0% |
| !!! | TATGTGTTGTTTAATCATTT+AGG | - | chr2_2:27426886-27426905 | None:intergenic | 20.0% |
| !! | AACACATAATTATATTATGC+AGG | + | chr2_2:27426965-27426984 | Msa0246290:intron | 20.0% |
| !! | ACACATAATTATATTATGCA+GGG | + | chr2_2:27426966-27426985 | Msa0246290:intron | 20.0% |
| !! | TGTATTACTTAATTTAAGCA+TGG | - | chr2_2:27427118-27427137 | None:intergenic | 20.0% |
| !!! | TTTTTAACACATCACATTTT+AGG | + | chr2_2:27427143-27427162 | Msa0246290:intron | 20.0% |
| !! | TATACCCTATTCTTAAAATT+TGG | - | chr2_2:27427170-27427189 | None:intergenic | 20.0% |
| !!! | AAGCTTTGATAGAATATATT+GGG | - | chr2_2:27427243-27427262 | None:intergenic | 20.0% |
| !!! | AAAGCTTTGATAGAATATAT+TGG | - | chr2_2:27427244-27427263 | None:intergenic | 20.0% |
| !!! | AAACTATGATTGTTTTGATA+AGG | - | chr2_2:27427326-27427345 | None:intergenic | 20.0% |
| !!! | GTGTATTATTATGTTTTACT+TGG | - | chr2_2:27428066-27428085 | None:intergenic | 20.0% |
| !! | TACAATACATAATATATGCA+AGG | + | chr2_2:27428175-27428194 | Msa0246290:intron | 20.0% |
| !!! | TTTTTTTTTTTTTTTGTGCC+TGG | - | chr2_2:27428216-27428235 | None:intergenic | 20.0% |
| !! | AAAGGAGAAATAACAAAAAA+AGG | - | chr2_2:27428580-27428599 | None:intergenic | 20.0% |
| !!! | TTTTTTTTGGTTGAGATTAA+CGG | + | chr2_2:27428716-27428735 | Msa0246290:intron | 20.0% |
| !!! | TACCACGATATTATATTTTT+TGG | - | chr2_2:27428932-27428951 | None:intergenic | 20.0% |
| !!! | ATATATTTAGCTTTCACATT+TGG | - | chr2_2:27428974-27428993 | None:intergenic | 20.0% |
| !!! | TTGTGGATTTTGTTATAAAA+TGG | + | chr2_2:27429003-27429022 | Msa0246290:intron | 20.0% |
| !! | AAAAAAGAATGCATATAACA+TGG | - | chr2_2:27429095-27429114 | None:intergenic | 20.0% |
| !! | TAATTTCATCAATAACTTCA+AGG | + | chr2_2:27430187-27430206 | Msa0246290:intron | 20.0% |
| !!! | TCAACTTTTAAGATTGAATA+AGG | + | chr2_2:27430824-27430843 | Msa0246290:three_prime_UTR | 20.0% |
| !!! | CAACTTTTAAGATTGAATAA+GGG | + | chr2_2:27430825-27430844 | Msa0246290:three_prime_UTR | 20.0% |
| !!! | AACTTTTAAGATTGAATAAG+GGG | + | chr2_2:27430826-27430845 | Msa0246290:three_prime_UTR | 20.0% |
| !! | TAAGACCGCAAAAATAATTT+TGG | + | chr2_2:27426255-27426274 | Msa0246290:five_prime_UTR | 25.0% |
| ! | TAATAGAGTGTGATTAAACT+TGG | + | chr2_2:27426594-27426613 | Msa0246290:intron | 25.0% |
| ! | ATTAAAAGAATGGTTAGGAA+TGG | + | chr2_2:27426696-27426715 | Msa0246290:CDS | 25.0% |
| !!! | TAGGTCCAAATTTTAAGAAT+AGG | + | chr2_2:27427162-27427181 | Msa0246290:intron | 25.0% |
| !!! | AGGTCCAAATTTTAAGAATA+GGG | + | chr2_2:27427163-27427182 | Msa0246290:intron | 25.0% |
| ! | CTGTCAAAAAAGAAGAATAT+TGG | - | chr2_2:27427216-27427235 | None:intergenic | 25.0% |
| ! | TTACTGTAACTTCAACAATA+TGG | + | chr2_2:27427264-27427283 | Msa0246290:intron | 25.0% |
| !! | AACAATCATAGTTTTCAATC+AGG | + | chr2_2:27427332-27427351 | Msa0246290:intron | 25.0% |
| !! | ACAATCATAGTTTTCAATCA+GGG | + | chr2_2:27427333-27427352 | Msa0246290:intron | 25.0% |
| ! | CGATCTTTAGTTATAAATTG+TGG | - | chr2_2:27427366-27427385 | None:intergenic | 25.0% |
| ! | GTAATTACATTCAATCATGT+AGG | - | chr2_2:27427389-27427408 | None:intergenic | 25.0% |
| ! | CATGATTGAATGTAATTACA+TGG | + | chr2_2:27427390-27427409 | Msa0246290:intron | 25.0% |
| !! | AATTACATGGTGGAATAATT+TGG | + | chr2_2:27427403-27427422 | Msa0246290:intron | 25.0% |
| ! | GACAATATATTGTTATATGC+AGG | + | chr2_2:27427489-27427508 | Msa0246290:intron | 25.0% |
| ! | CTTCATTTATTCACCTTAAA+AGG | + | chr2_2:27427534-27427553 | Msa0246290:intron | 25.0% |
| !! | TTTTAGACCATAAAAAAGTC+TGG | - | chr2_2:27427590-27427609 | None:intergenic | 25.0% |
| ! | AGAATGAAGTTAAAGTTGTT+TGG | + | chr2_2:27427645-27427664 | Msa0246290:intron | 25.0% |
| ! | TATTGAATGACCGTAAAATA+GGG | + | chr2_2:27428313-27428332 | Msa0246290:intron | 25.0% |
| ! | ATTAACGGTATACTAACAAA+AGG | + | chr2_2:27428731-27428750 | Msa0246290:intron | 25.0% |
| ! | TTATATTGGGATGTTTAAGT+AGG | - | chr2_2:27428825-27428844 | None:intergenic | 25.0% |
| ! | GACAATGCATAAAATATGTA+AGG | + | chr2_2:27428881-27428900 | Msa0246290:intron | 25.0% |
| !!! | CACGATATTATATTTTTTGG+TGG | - | chr2_2:27428929-27428948 | None:intergenic | 25.0% |
| ! | CACCAAAAAATATAATATCG+TGG | + | chr2_2:27428927-27428946 | Msa0246290:intron | 25.0% |
| ! | GAAATAGAATGCATATAACA+TGG | - | chr2_2:27429141-27429160 | None:intergenic | 25.0% |
| ! | TAATAATAAATCTCCCTTCT+TGG | + | chr2_2:27429274-27429293 | Msa0246290:intron | 25.0% |
| ! | TATTATATCATCTGCAAATC+TGG | - | chr2_2:27429354-27429373 | None:intergenic | 25.0% |
| !! | GTTTTTCATGAATCAGATTT+AGG | + | chr2_2:27429710-27429729 | Msa0246290:intron | 25.0% |
| ! | AAAATATTAAGGGAGTTCAA+GGG | - | chr2_2:27429880-27429899 | None:intergenic | 25.0% |
| ! | AAAAATATTAAGGGAGTTCA+AGG | - | chr2_2:27429881-27429900 | None:intergenic | 25.0% |
| !! | TAGTAGTGTTAAATCTTTTG+AGG | + | chr2_2:27430066-27430085 | Msa0246290:intron | 25.0% |
| !! | AGTAGTGTTAAATCTTTTGA+GGG | + | chr2_2:27430067-27430086 | Msa0246290:intron | 25.0% |
| ! | GGCAATATTATCAAAAAGTT+TGG | + | chr2_2:27430668-27430687 | Msa0246290:CDS | 25.0% |
| !! | AAAAAGTTTGGTGATAATGA+TGG | + | chr2_2:27430680-27430699 | Msa0246290:CDS | 25.0% |
| !! | AAAAGTTTGGTGATAATGAT+GGG | + | chr2_2:27430681-27430700 | Msa0246290:CDS | 25.0% |
| ! | TTTGAGAACAATCTTTACTT+AGG | + | chr2_2:27430737-27430756 | Msa0246290:CDS | 25.0% |
| !! | AATACATTCCTAGATGTTTT+TGG | - | chr2_2:27430908-27430927 | None:intergenic | 25.0% |
| ! | TTATTATTCATATCAGTGAC+AGG | - | chr2_2:27430946-27430965 | None:intergenic | 25.0% |
| ! | CTTAAGTTTTCACCTGTAAT+TGG | - | chr2_2:27426491-27426510 | None:intergenic | 30.0% |
| CAATTACAGGTGAAAACTTA+AGG | + | chr2_2:27426489-27426508 | Msa0246290:intron | 30.0% | |
| AGATGGTTGGATTAAAAGAA+TGG | + | chr2_2:27426686-27426705 | Msa0246290:CDS | 30.0% | |
| GTTGGATTAAAAGAATGGTT+AGG | + | chr2_2:27426691-27426710 | Msa0246290:CDS | 30.0% | |
| AATGGTTAGGAATGGAAATT+GGG | + | chr2_2:27426704-27426723 | Msa0246290:CDS | 30.0% | |
| CAAGCATGAATTATTTACCA+AGG | - | chr2_2:27426811-27426830 | None:intergenic | 30.0% | |
| CTTGGTAAATAATTCATGCT+TGG | + | chr2_2:27426809-27426828 | Msa0246290:intron | 30.0% | |
| TATTATGCAGGGTTTACTAA+AGG | + | chr2_2:27426977-27426996 | Msa0246290:intron | 30.0% | |
| GTTATCCTTTCACAAGTAAA+TGG | + | chr2_2:27427020-27427039 | Msa0246290:CDS | 30.0% | |
| ATGGATGAACTGAACAAAAT+AGG | - | chr2_2:27427099-27427118 | None:intergenic | 30.0% | |
| TTGGACAGAACATATTATTG+AGG | - | chr2_2:27427197-27427216 | None:intergenic | 30.0% | |
| CTTTGATAGAATATATTGGG+TGG | - | chr2_2:27427240-27427259 | None:intergenic | 30.0% | |
| GATTGAATGTAATTACATGG+TGG | + | chr2_2:27427393-27427412 | Msa0246290:intron | 30.0% | |
| TAGTTCTTGTAAGCATAGTT+CGG | + | chr2_2:27427456-27427475 | Msa0246290:intron | 30.0% | |
| AAGGTGAATAAATGAAGTGT+CGG | - | chr2_2:27427531-27427550 | None:intergenic | 30.0% | |
| CAAACTCAAACATTTCTACT+TGG | + | chr2_2:27428030-27428049 | Msa0246290:intron | 30.0% | |
| !! | ATTATGCCACTTTGTTATAG+TGG | + | chr2_2:27428087-27428106 | Msa0246290:intron | 30.0% |
| TAGAAACCACTATAACAAAG+TGG | - | chr2_2:27428096-27428115 | None:intergenic | 30.0% | |
| TACATAATATATGCAAGGTC+TGG | + | chr2_2:27428180-27428199 | Msa0246290:intron | 30.0% | |
| ACATAATATATGCAAGGTCT+GGG | + | chr2_2:27428181-27428200 | Msa0246290:intron | 30.0% | |
| CTATTGAATGACCGTAAAAT+AGG | + | chr2_2:27428312-27428331 | Msa0246290:intron | 30.0% | |
| AACATCCCAATATAATATCG+TGG | + | chr2_2:27428830-27428849 | Msa0246290:intron | 30.0% | |
| TGCATAAAATATGTAAGGTC+TGG | + | chr2_2:27428886-27428905 | Msa0246290:intron | 30.0% | |
| GCATAAAATATGTAAGGTCT+GGG | + | chr2_2:27428887-27428906 | Msa0246290:intron | 30.0% | |
| CATAAAATATGTAAGGTCTG+GGG | + | chr2_2:27428888-27428907 | Msa0246290:intron | 30.0% | |
| AATATCGTGGTATTCTGATA+TGG | + | chr2_2:27428940-27428959 | Msa0246290:intron | 30.0% | |
| !! | ATTTAGCTTTCACATTTGGA+TGG | - | chr2_2:27428970-27428989 | None:intergenic | 30.0% |
| ACTGAATTTGAACTTGAACA+CGG | - | chr2_2:27429233-27429252 | None:intergenic | 30.0% | |
| AAGTTCAAATTCAGTGGAAA+TGG | + | chr2_2:27429238-27429257 | Msa0246290:intron | 30.0% | |
| !! | GATATAATAGAAGCATCAGA+TGG | + | chr2_2:27429365-27429384 | Msa0246290:CDS | 30.0% |
| TGTAAACCAAATTTGGTACT+TGG | - | chr2_2:27429410-27429429 | None:intergenic | 30.0% | |
| CCAATTGTGTAAACCAAATT+TGG | - | chr2_2:27429417-27429436 | None:intergenic | 30.0% | |
| ! | CCAAATTTGGTTTACACAAT+TGG | + | chr2_2:27429414-27429433 | Msa0246290:CDS | 30.0% |
| ATAACGGTTTCATTTGACAT+GGG | - | chr2_2:27429491-27429510 | None:intergenic | 30.0% | |
| AATAACGGTTTCATTTGACA+TGG | - | chr2_2:27429492-27429511 | None:intergenic | 30.0% | |
| CAAATCATCAAGGACAATAA+CGG | - | chr2_2:27429507-27429526 | None:intergenic | 30.0% | |
| !! | TGGCTAAAAGGTATTAACAA+AGG | + | chr2_2:27429745-27429764 | Msa0246290:CDS | 30.0% |
| !! | ATTAATACCTTGAGTTGAGT+GGG | - | chr2_2:27430116-27430135 | None:intergenic | 30.0% |
| !! | AATTAATACCTTGAGTTGAG+TGG | - | chr2_2:27430117-27430136 | None:intergenic | 30.0% |
| ! | TTTCAATCTGAAGTTTCGAT+TGG | + | chr2_2:27430411-27430430 | Msa0246290:intron | 30.0% |
| ATTGGTCATGTTATGCAATA+AGG | + | chr2_2:27430465-27430484 | Msa0246290:intron | 30.0% | |
| !! | AATAAAGCTACGAAGTGTTT+TGG | - | chr2_2:27430581-27430600 | None:intergenic | 30.0% |
| TAGTGTAACTAAATCTGCAA+TGG | + | chr2_2:27430625-27430644 | Msa0246290:CDS | 30.0% | |
| !! | AGTCTTAATACTGACTTTGT+TGG | + | chr2_2:27430761-27430780 | Msa0246290:CDS | 30.0% |
| !! | GTCTTAATACTGACTTTGTT+GGG | + | chr2_2:27430762-27430781 | Msa0246290:CDS | 30.0% |
| GATTTAGACCAAAAACATCT+AGG | + | chr2_2:27430897-27430916 | Msa0246290:three_prime_UTR | 30.0% | |
| TCAAGAGAAACTGGATCTAT+GGG | - | chr2_2:27426435-27426454 | None:intergenic | 35.0% | |
| TTCAAGAGAAACTGGATCTA+TGG | - | chr2_2:27426436-27426455 | None:intergenic | 35.0% | |
| AGTGGTATTTCAAGAGAAAC+TGG | - | chr2_2:27426444-27426463 | None:intergenic | 35.0% | |
| GACCAAAAACAACCAATTAC+AGG | + | chr2_2:27426476-27426495 | Msa0246290:CDS | 35.0% | |
| !! | CACCTGTAATTGGTTGTTTT+TGG | - | chr2_2:27426481-27426500 | None:intergenic | 35.0% |
| AGTGTGATTAAACTTGGAGA+AGG | + | chr2_2:27426600-27426619 | Msa0246290:CDS | 35.0% | |
| TTATCCACACAAACATCTTC+TGG | - | chr2_2:27426639-27426658 | None:intergenic | 35.0% | |
| GATGTTTGTGTGGATAAAGA+TGG | + | chr2_2:27426642-27426661 | Msa0246290:CDS | 35.0% | |
| CATCTCTTGTAGCTGTATAT+AGG | - | chr2_2:27426671-27426690 | None:intergenic | 35.0% | |
| CTATATACAGCTACAAGAGA+TGG | + | chr2_2:27426669-27426688 | Msa0246290:CDS | 35.0% | |
| GAATGGTTAGGAATGGAAAT+TGG | + | chr2_2:27426703-27426722 | Msa0246290:CDS | 35.0% | |
| ATAGATAGCTCTTCTTTGCT+TGG | + | chr2_2:27426741-27426760 | Msa0246290:CDS | 35.0% | |
| GGAATCACTACATCTAAAGA+TGG | + | chr2_2:27426762-27426781 | Msa0246290:CDS | 35.0% | |
| ATCACTACATCTAAAGATGG+TGG | + | chr2_2:27426765-27426784 | Msa0246290:CDS | 35.0% | |
| CATTGTTTGTGATACTACCT+TGG | + | chr2_2:27426791-27426810 | Msa0246290:CDS | 35.0% | |
| TTACTAAAGGTTACGGAAGA+TGG | + | chr2_2:27426990-27427009 | Msa0246290:CDS | 35.0% | |
| GAGAACCATTTACTTGTGAA+AGG | - | chr2_2:27427028-27427047 | None:intergenic | 35.0% | |
| AATTGAGCTGAAAGCTTCTT+GGG | - | chr2_2:27427298-27427317 | None:intergenic | 35.0% | |
| ! | TACATGGTGGAATAATTTGG+AGG | + | chr2_2:27427406-27427425 | Msa0246290:intron | 35.0% |
| ! | TGGCTAGAATTCACCTTTTA+AGG | - | chr2_2:27427550-27427569 | None:intergenic | 35.0% |
| AGGTGAATTCTAGCCATATT+AGG | + | chr2_2:27427554-27427573 | Msa0246290:intron | 35.0% | |
| ! | TAGCCATATTAGGTACTGTT+TGG | + | chr2_2:27427564-27427583 | Msa0246290:intron | 35.0% |
| !!! | TGTTTGGCCAGACTTTTTTA+TGG | + | chr2_2:27427580-27427599 | Msa0246290:intron | 35.0% |
| CATAATATATGCAAGGTCTG+GGG | + | chr2_2:27428182-27428201 | Msa0246290:intron | 35.0% | |
| ! | TGCATGTCTTCCCTATTTTA+CGG | - | chr2_2:27428326-27428345 | None:intergenic | 35.0% |
| !! | ACTTGTTGTACAAGTAAACG+TGG | + | chr2_2:27428346-27428365 | Msa0246290:intron | 35.0% |
| ! | CTTGTTGTACAAGTAAACGT+GGG | + | chr2_2:27428347-27428366 | Msa0246290:intron | 35.0% |
| AGGAGAGATTATGCAAAGAA+GGG | - | chr2_2:27428560-27428579 | None:intergenic | 35.0% | |
| AAGGAGAGATTATGCAAAGA+AGG | - | chr2_2:27428561-27428580 | None:intergenic | 35.0% | |
| GAGGACCACGATATTATATT+GGG | - | chr2_2:27428838-27428857 | None:intergenic | 35.0% | |
| ATAACATGGACCTCGAAAAA+TGG | - | chr2_2:27429081-27429100 | None:intergenic | 35.0% | |
| ! | GTGTTCAAGTTCAAATTCAG+TGG | + | chr2_2:27429232-27429251 | Msa0246290:intron | 35.0% |
| AGTGTACCAAGTACCAAATT+TGG | + | chr2_2:27429401-27429420 | Msa0246290:CDS | 35.0% | |
| TACCTTAAAAGTTGTCCATG+TGG | - | chr2_2:27429464-27429483 | None:intergenic | 35.0% | |
| ! | CGTTATTGTCCTTGATGATT+TGG | + | chr2_2:27429505-27429524 | Msa0246290:CDS | 35.0% |
| CACGAGATAATCTTCATCTT+TGG | - | chr2_2:27429555-27429574 | None:intergenic | 35.0% | |
| CAAAGATGAAGATTATCTCG+TGG | + | chr2_2:27429553-27429572 | Msa0246290:CDS | 35.0% | |
| ! | GATTTAGGTGTCTGAAACAT+TGG | + | chr2_2:27429725-27429744 | Msa0246290:intron | 35.0% |
| ! | TGTCTGAAACATTGGCTAAA+AGG | + | chr2_2:27429733-27429752 | Msa0246290:CDS | 35.0% |
| TTTATTGAAAACCTTCCAGC+TGG | + | chr2_2:27429781-27429800 | Msa0246290:CDS | 35.0% | |
| GGAGCAAGATTAATGTTATC+AGG | - | chr2_2:27429808-27429827 | None:intergenic | 35.0% | |
| AACATTAATCTTGCTCCTGA+TGG | + | chr2_2:27429811-27429830 | Msa0246290:CDS | 35.0% | |
| ! | ATGAGTGTTGTCAACACTTT+GGG | + | chr2_2:27430039-27430058 | Msa0246290:intron | 35.0% |
| !!! | GAAGTGTTTTGGTACTTTAG+AGG | - | chr2_2:27430570-27430589 | None:intergenic | 35.0% |
| !! | ACTTCGTAGCTTTATTTCCA+AGG | + | chr2_2:27430585-27430604 | Msa0246290:CDS | 35.0% |
| TTAATCATGTTAACCAGCCT+TGG | - | chr2_2:27430605-27430624 | None:intergenic | 35.0% | |
| TGTAACTAAATCTGCAATGG+TGG | + | chr2_2:27430628-27430647 | Msa0246290:CDS | 35.0% | |
| TTGGTCGAAGATACAGAAAG+TGG | - | chr2_2:27426462-27426481 | None:intergenic | 40.0% | |
| ATACAGCTACAAGAGATGGT+TGG | + | chr2_2:27426673-27426692 | Msa0246290:CDS | 40.0% | |
| GGAATGGAAATTGGGAGAAT+TGG | + | chr2_2:27426712-27426731 | Msa0246290:CDS | 40.0% | |
| GCAGGGTTTACTAAAGGTTA+CGG | + | chr2_2:27426983-27427002 | Msa0246290:intron | 40.0% | |
| CAATTGAGCTGAAAGCTTCT+TGG | - | chr2_2:27427299-27427318 | None:intergenic | 40.0% | |
| ! | AGCATAGTTCGGTTTGAATC+TGG | + | chr2_2:27427467-27427486 | Msa0246290:intron | 40.0% |
| TGGCCAAACAGTACCTAATA+TGG | - | chr2_2:27427570-27427589 | None:intergenic | 40.0% | |
| CGAGGACCACGATATTATAT+TGG | - | chr2_2:27428839-27428858 | None:intergenic | 40.0% | |
| GACCTCGAAAAATGGTCTAA+CGG | - | chr2_2:27429073-27429092 | None:intergenic | 40.0% | |
| AGTGGAAATGGTAGTCACTT+TGG | + | chr2_2:27429250-27429269 | Msa0246290:intron | 40.0% | |
| TTGGTATCTAGATGTGCTTG+AGG | + | chr2_2:27429433-27429452 | Msa0246290:CDS | 40.0% | |
| ! | GACCACATGGACAACTTTTA+AGG | + | chr2_2:27429459-27429478 | Msa0246290:CDS | 40.0% |
| ! | ATCTCGTGGTTTGTGAAACT+TGG | + | chr2_2:27429567-27429586 | Msa0246290:CDS | 40.0% |
| TTAATGTTATCAGGTCCAGC+TGG | - | chr2_2:27429799-27429818 | None:intergenic | 40.0% | |
| ATTCTGGATCGCTTTGATTC+AGG | + | chr2_2:27429837-27429856 | Msa0246290:CDS | 40.0% | |
| ! | CATGAGTGTTGTCAACACTT+TGG | + | chr2_2:27430038-27430057 | Msa0246290:intron | 40.0% |
| TTTGACGTTCGTATCTGTGT+CGG | - | chr2_2:27430296-27430315 | None:intergenic | 40.0% | |
| GAAAATACCCACATGTGTGT+CGG | + | chr2_2:27430369-27430388 | Msa0246290:intron | 40.0% | |
| ! | CAATCTGAAGTTTCGATTGG+CGG | + | chr2_2:27430414-27430433 | Msa0246290:intron | 40.0% |
| TGTTACAGGTGACTTCTGAA+AGG | + | chr2_2:27430528-27430547 | Msa0246290:intron | 40.0% | |
| ! | TAGTTCTATGCACTTTGCAG+TGG | - | chr2_2:27430794-27430813 | None:intergenic | 40.0% |
| TACATGCGATATTAGTTGCG+AGG | + | chr2_2:27430966-27430985 | Msa0246290:three_prime_UTR | 40.0% | |
| !! | CCATTTTGGTGCACAAAGGA+AGG | - | chr2_2:27426347-27426366 | None:intergenic | 45.0% |
| CCTTCCTTTGTGCACCAAAA+TGG | + | chr2_2:27426344-27426363 | Msa0246290:exon | 45.0% | |
| !!! | AGTGCCATTTTGGTGCACAA+AGG | - | chr2_2:27426351-27426370 | None:intergenic | 45.0% |
| !!! | GCTTGAGGTTAGTGCCATTT+TGG | - | chr2_2:27426361-27426380 | None:intergenic | 45.0% |
| AATGGCACTAACCTCAAGCT+TGG | + | chr2_2:27426362-27426381 | Msa0246290:exon | 45.0% | |
| GCAACCAGAAGATGTTTGTG+TGG | + | chr2_2:27426632-27426651 | Msa0246290:CDS | 45.0% | |
| !! | GTGAGCTTAGCTAAGTTGGT+AGG | + | chr2_2:27428152-27428171 | Msa0246290:intron | 45.0% |
| TGAGCTTAGCTCAGTTGCTA+TGG | + | chr2_2:27428859-27428878 | Msa0246290:intron | 45.0% | |
| ! | AAGGTCTGGGGTTCAAATCA+CGG | + | chr2_2:27428900-27428919 | Msa0246290:intron | 45.0% |
| !! | CACCGTTAGACCATTTTTCG+AGG | + | chr2_2:27429068-27429087 | Msa0246290:intron | 45.0% |
| TGGCAAAGGCCAAATCATCA+AGG | - | chr2_2:27429517-27429536 | None:intergenic | 45.0% | |
| ! | GATGATTTGGCCTTTGCCAA+TGG | + | chr2_2:27429518-27429537 | Msa0246290:CDS | 45.0% |
| TTTGGACAGTGCAACACCAT+TGG | - | chr2_2:27429537-27429556 | None:intergenic | 45.0% | |
| ACCTCACAGTCACTGTGAAT+CGG | - | chr2_2:27430164-27430183 | None:intergenic | 45.0% | |
| ! | ACAGGTGACTTCTGAAAGGA+TGG | + | chr2_2:27430532-27430551 | Msa0246290:intron | 45.0% |
| ! | CAGGTGACTTCTGAAAGGAT+GGG | + | chr2_2:27430533-27430552 | Msa0246290:intron | 45.0% |
| ! | AGGTGACTTCTGAAAGGATG+GGG | + | chr2_2:27430534-27430553 | Msa0246290:intron | 45.0% |
| !! | CGTAGCTTTATTTCCAAGGC+TGG | + | chr2_2:27430589-27430608 | Msa0246290:CDS | 45.0% |
| GTGGTGAAAGTGACAACTGA+AGG | + | chr2_2:27430647-27430666 | Msa0246290:CDS | 45.0% | |
| !!! | ATAATATTTTTTCTTAAAAA+TGG | + | chr2_2:27429037-27429056 | Msa0246290:intron | 5.0% |
| AGCTGCTAGAACCAAGCTTG+AGG | - | chr2_2:27426376-27426395 | None:intergenic | 50.0% | |
| CCAACTTAGCTAAGCTCACG+AGG | - | chr2_2:27428151-27428170 | None:intergenic | 50.0% | |
| CCTCGTGAGCTTAGCTAAGT+TGG | + | chr2_2:27428148-27428167 | Msa0246290:intron | 50.0% | |
| CAGTGCAACACCATTGGCAA+AGG | - | chr2_2:27429531-27429550 | None:intergenic | 50.0% | |
| TGTTATCAGGTCCAGCTGGA+AGG | - | chr2_2:27429795-27429814 | None:intergenic | 50.0% | |
| TTGCTCCTGATGGCTCATTC+TGG | + | chr2_2:27429821-27429840 | Msa0246290:CDS | 50.0% | |
| ! | GTGAGTACTGCCACATGTTG+TGG | + | chr2_2:27430089-27430108 | Msa0246290:intron | 50.0% |
| TTGAGTGGGACCACAACATG+TGG | - | chr2_2:27430102-27430121 | None:intergenic | 50.0% | |
| TTGTGGTCCCACTCAACTCA+AGG | + | chr2_2:27430106-27430125 | Msa0246290:intron | 50.0% | |
| CCTCACAGTCACTGTGAATC+GGG | - | chr2_2:27430163-27430182 | None:intergenic | 50.0% | |
| GGTCACGTGGAAGCTAACTC+TGG | + | chr2_2:27428383-27428402 | Msa0246290:intron | 55.0% | |
| GCAACTGAGCTAAGCTCACG+AGG | - | chr2_2:27428857-27428876 | None:intergenic | 55.0% | |
| GTGCTTGAGGCAAGACCACA+TGG | + | chr2_2:27429446-27429465 | Msa0246290:CDS | 55.0% | |
| GCGATCCAGAATGAGCCATC+AGG | - | chr2_2:27429829-27429848 | None:intergenic | 55.0% | |
| CCCGATTCACAGTGACTGTG+AGG | + | chr2_2:27430160-27430179 | Msa0246290:intron | 55.0% | |
| ! | ACCCACATGTGTGTCGGTGT+CGG | + | chr2_2:27430375-27430394 | Msa0246290:intron | 55.0% |
| TCCGACACCGACACACATGT+GGG | - | chr2_2:27430379-27430398 | None:intergenic | 55.0% | |
| ! | AGGTCTGGGGTTCGAACTCC+AGG | + | chr2_2:27428195-27428214 | Msa0246290:intron | 60.0% |
| AACGTGGGACGAGCACACTC+AGG | + | chr2_2:27428362-27428381 | Msa0246290:intron | 60.0% | |
| ACGAGCACACTCAGGTCACG+TGG | + | chr2_2:27428370-27428389 | Msa0246290:intron | 60.0% | |
| GTCCGACACCGACACACATG+TGG | - | chr2_2:27430380-27430399 | None:intergenic | 60.0% | |
| !! | TGTGTGTCGGTGTCGGACAC+TGG | + | chr2_2:27430382-27430401 | Msa0246290:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 27426201 | 27430995 | 27426201 | ID=Msa0246290;Name=Msa0246290 |
| chr2_2 | mRNA | 27426201 | 27430995 | 27426201 | ID=Msa0246290-mRNA-1;Parent=Msa0246290;Name=Msa0246290-mRNA-1;_AED=0.28;_eAED=0.28;_QI=162|1|1|1|1|1|6|187|352 |
| chr2_2 | exon | 27426201 | 27426497 | 27426201 | ID=Msa0246290-mRNA-1:exon:9937;Parent=Msa0246290-mRNA-1 |
| chr2_2 | exon | 27426600 | 27426812 | 27426600 | ID=Msa0246290-mRNA-1:exon:9938;Parent=Msa0246290-mRNA-1 |
| chr2_2 | exon | 27426987 | 27427054 | 27426987 | ID=Msa0246290-mRNA-1:exon:9939;Parent=Msa0246290-mRNA-1 |
| chr2_2 | exon | 27429355 | 27429591 | 27429355 | ID=Msa0246290-mRNA-1:exon:9940;Parent=Msa0246290-mRNA-1 |
| chr2_2 | exon | 27429726 | 27429858 | 27429726 | ID=Msa0246290-mRNA-1:exon:9941;Parent=Msa0246290-mRNA-1 |
| chr2_2 | exon | 27430536 | 27430995 | 27430536 | ID=Msa0246290-mRNA-1:exon:9942;Parent=Msa0246290-mRNA-1 |
| chr2_2 | five_prime_UTR | 27426201 | 27426362 | 27426201 | ID=Msa0246290-mRNA-1:five_prime_utr;Parent=Msa0246290-mRNA-1 |
| chr2_2 | CDS | 27426363 | 27426497 | 27426363 | ID=Msa0246290-mRNA-1:cds;Parent=Msa0246290-mRNA-1 |
| chr2_2 | CDS | 27426600 | 27426812 | 27426600 | ID=Msa0246290-mRNA-1:cds;Parent=Msa0246290-mRNA-1 |
| chr2_2 | CDS | 27426987 | 27427054 | 27426987 | ID=Msa0246290-mRNA-1:cds;Parent=Msa0246290-mRNA-1 |
| chr2_2 | CDS | 27429355 | 27429591 | 27429355 | ID=Msa0246290-mRNA-1:cds;Parent=Msa0246290-mRNA-1 |
| chr2_2 | CDS | 27429726 | 27429858 | 27429726 | ID=Msa0246290-mRNA-1:cds;Parent=Msa0246290-mRNA-1 |
| chr2_2 | CDS | 27430536 | 27430808 | 27430536 | ID=Msa0246290-mRNA-1:cds;Parent=Msa0246290-mRNA-1 |
| chr2_2 | three_prime_UTR | 27430809 | 27430995 | 27430809 | ID=Msa0246290-mRNA-1:three_prime_utr;Parent=Msa0246290-mRNA-1 |
| Gene Sequence |
| Protein sequence |
