Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0284860 | XP_003595315.1 | 97.159 | 352 | 10 | 0 | 1 | 352 | 1 | 352 | 0.0 | 700 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0284860 | sp|Q7TP48|APMAP_RAT | 30.518 | 367 | 227 | 8 | 11 | 351 | 11 | 375 | 1.00e-46 | 166 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0284860 | G7IGG4 | 97.159 | 352 | 10 | 0 | 1 | 352 | 1 | 352 | 0.0 | 700 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0011720 | Msa0284860 | 0.800999 | 1.107502e-48 | -8.615850e-47 |
| Msa0050730 | Msa0284860 | 0.845209 | 4.685215e-59 | -8.615850e-47 |
| Msa0050760 | Msa0284860 | 0.849284 | 3.570442e-60 | -8.615850e-47 |
| Msa0053900 | Msa0284860 | 0.801815 | 7.536440e-49 | -8.615850e-47 |
| Msa0069260 | Msa0284860 | 0.800801 | 1.215465e-48 | -8.615850e-47 |
| Msa0105420 | Msa0284860 | 0.829674 | 4.510668e-55 | -8.615850e-47 |
| Msa0140910 | Msa0284860 | 0.832013 | 1.204001e-55 | -8.615850e-47 |
| Msa0151690 | Msa0284860 | 0.819810 | 9.549617e-53 | -8.615850e-47 |
| Msa0191190 | Msa0284860 | 0.811342 | 7.345117e-51 | -8.615850e-47 |
| Msa0199710 | Msa0284860 | 0.814872 | 1.234997e-51 | -8.615850e-47 |
| Msa0203170 | Msa0284860 | 0.907260 | 6.139199e-81 | -8.615850e-47 |
| Msa0211010 | Msa0284860 | 0.804128 | 2.505956e-49 | -8.615850e-47 |
| Msa0246290 | Msa0284860 | 0.843195 | 1.626638e-58 | -8.615850e-47 |
| Msa0260810 | Msa0284860 | 0.807474 | 4.967603e-50 | -8.615850e-47 |
| Msa0284860 | Msa0284870 | 0.811454 | 6.946269e-51 | -8.615850e-47 |
| Msa0284860 | Msa0290650 | 0.801916 | 7.183759e-49 | -8.615850e-47 |
| Msa0284860 | Msa0292180 | 0.826210 | 3.073210e-54 | -8.615850e-47 |
| Msa0284860 | Msa0296760 | 0.804367 | 2.235482e-49 | -8.615850e-47 |
| Msa0284860 | Msa0306130 | 0.817362 | 3.429985e-52 | -8.615850e-47 |
| Msa0284860 | Msa0311920 | 0.808663 | 2.772553e-50 | -8.615850e-47 |
| Msa0284860 | Msa0335040 | 0.850870 | 1.283655e-60 | -8.615850e-47 |
| Msa0284860 | Msa0371540 | 0.810252 | 1.264371e-50 | -8.615850e-47 |
| Msa0284860 | Msa0419970 | 0.816182 | 6.308983e-52 | -8.615850e-47 |
| Msa0284860 | Msa0449760 | 0.803373 | 3.595335e-49 | -8.615850e-47 |
| Msa0284860 | Msa0449830 | 0.803634 | 3.174499e-49 | -8.615850e-47 |
| Msa0284860 | Msa0464900 | 0.802279 | 6.048238e-49 | -8.615850e-47 |
| Msa0284860 | Msa0466060 | 0.815430 | 9.282593e-52 | -8.615850e-47 |
| Msa0284860 | Msa0517340 | 0.811989 | 5.311871e-51 | -8.615850e-47 |
| Msa0284860 | Msa0524200 | -0.802521 | 5.393332e-49 | -8.615850e-47 |
| Msa0284860 | Msa0578970 | 0.823728 | 1.184923e-53 | -8.615850e-47 |
| Msa0284860 | Msa0581340 | 0.801585 | 8.399112e-49 | -8.615850e-47 |
| Msa0284860 | Msa0610590 | 0.828646 | 8.007286e-55 | -8.615850e-47 |
| Msa0284860 | Msa0622340 | 0.820917 | 5.322340e-53 | -8.615850e-47 |
| Msa0284860 | Msa0651190 | 0.821583 | 3.738011e-53 | -8.615850e-47 |
| Msa0284860 | Msa0651790 | 0.838729 | 2.419315e-57 | -8.615850e-47 |
| Msa0284860 | Msa0694250 | 0.843390 | 1.442797e-58 | -8.615850e-47 |
| Msa0284860 | Msa0731710 | 0.818589 | 1.811364e-52 | -8.615850e-47 |
| Msa0284860 | Msa0739570 | 0.823869 | 1.098078e-53 | -8.615850e-47 |
| Msa0284860 | Msa0782330 | 0.821647 | 3.613057e-53 | -8.615850e-47 |
| Msa0284860 | Msa0860270 | 0.819239 | 1.289065e-52 | -8.615850e-47 |
| Msa0284860 | Msa0864950 | 0.807500 | 4.904163e-50 | -8.615850e-47 |
| Msa0284860 | Msa0882510 | 0.813883 | 2.042459e-51 | -8.615850e-47 |
| Msa0284860 | Msa0896210 | 0.802389 | 5.741505e-49 | -8.615850e-47 |
| Msa0284860 | Msa0899230 | 0.810523 | 1.105042e-50 | -8.615850e-47 |
| Msa0284860 | Msa0908170 | 0.852133 | 5.638261e-61 | -8.615850e-47 |
| Msa0284860 | Msa0922540 | 0.808576 | 2.894583e-50 | -8.615850e-47 |
| Msa0284860 | Msa0950620 | 0.800886 | 1.167891e-48 | -8.615850e-47 |
| Msa0284860 | Msa0959010 | 0.808076 | 3.699237e-50 | -8.615850e-47 |
| Msa0284860 | Msa0960160 | 0.813828 | 2.100259e-51 | -8.615850e-47 |
| Msa0284860 | Msa0993530 | 0.806553 | 7.778240e-50 | -8.615850e-47 |
| Msa0284860 | Msa1009000 | 0.800926 | 1.145802e-48 | -8.615850e-47 |
| Msa0284860 | Msa1026760 | 0.800103 | 1.686086e-48 | -8.615850e-47 |
| Msa0284860 | Msa1026790 | 0.800229 | 1.589816e-48 | -8.615850e-47 |
| Msa0284860 | Msa1078710 | 0.827405 | 1.593463e-54 | -8.615850e-47 |
| Msa0284860 | Msa1081600 | 0.807776 | 4.283972e-50 | -8.615850e-47 |
| Msa0284860 | Msa1087470 | 0.810000 | 1.432683e-50 | -8.615850e-47 |
| Msa0284860 | Msa1097840 | 0.822172 | 2.730653e-53 | -8.615850e-47 |
| Msa0284860 | Msa1133710 | 0.821333 | 4.268922e-53 | -8.615850e-47 |
| Msa0284860 | Msa1137600 | 0.802478 | 5.504182e-49 | -8.615850e-47 |
| Msa0284860 | Msa1166370 | 0.806213 | 9.173913e-50 | -8.615850e-47 |
| Msa0284860 | Msa1218650 | 0.824287 | 8.758088e-54 | -8.615850e-47 |
| Msa0284860 | Msa1221260 | 0.804100 | 2.539871e-49 | -8.615850e-47 |
| Msa0284860 | Msa1244830 | 0.805710 | 1.170263e-49 | -8.615850e-47 |
| Msa0284860 | Msa1278840 | 0.802802 | 4.718582e-49 | -8.615850e-47 |
| Msa0284860 | Msa1343820 | 0.807859 | 4.114386e-50 | -8.615850e-47 |
| Msa0284860 | Msa1363890 | 0.842748 | 2.139468e-58 | -8.615850e-47 |
| Msa0284860 | Msa1365040 | -0.805179 | 1.512318e-49 | -8.615850e-47 |
| Msa0284860 | Msa1367390 | -0.806007 | 1.014034e-49 | -8.615850e-47 |
| Msa0284860 | Msa1404540 | 0.816506 | 5.339058e-52 | -8.615850e-47 |
| Msa0284860 | Msa1408790 | 0.819800 | 9.600383e-53 | -8.615850e-47 |
| Msa0284860 | Msa1419110 | 0.831503 | 1.608768e-55 | -8.615850e-47 |
| Msa0284860 | Msa1431060 | 0.803664 | 3.129284e-49 | -8.615850e-47 |
| Msa0284860 | Msa1436040 | 0.811040 | 8.540017e-51 | -8.615850e-47 |
| Msa0284860 | Msa1439230 | 0.833964 | 3.940659e-56 | -8.615850e-47 |
| Msa0284860 | Msa1440600 | 0.849251 | 3.646660e-60 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0284860 | MtrunA17_Chr2g0300851 | 97.159 | 352 | 10 | 0 | 1 | 352 | 1 | 352 | 0.0 | 700 |
| Msa0284860 | MtrunA17_Chr2g0300841 | 87.819 | 353 | 39 | 2 | 4 | 352 | 8 | 360 | 0.0 | 627 |
| Msa0284860 | MtrunA17_Chr2g0300861 | 84.225 | 355 | 53 | 1 | 1 | 352 | 17 | 371 | 0.0 | 608 |
| Msa0284860 | MtrunA17_Chr8g0370791 | 31.356 | 354 | 226 | 11 | 6 | 350 | 22 | 367 | 3.21e-51 | 174 |
| Msa0284860 | MtrunA17_Chr8g0370761 | 31.609 | 348 | 221 | 11 | 6 | 344 | 22 | 361 | 1.02e-47 | 165 |
| Msa0284860 | MtrunA17_Chr8g0370771 | 31.489 | 235 | 154 | 5 | 117 | 350 | 4 | 232 | 1.40e-35 | 129 |
| Msa0284860 | MtrunA17_Chr4g0025341 | 30.970 | 268 | 172 | 6 | 91 | 349 | 128 | 391 | 7.58e-34 | 129 |
| Msa0284860 | MtrunA17_Chr7g0256591 | 30.830 | 253 | 159 | 6 | 107 | 347 | 136 | 384 | 1.15e-31 | 122 |
| Msa0284860 | MtrunA17_Chr2g0329531 | 28.322 | 286 | 187 | 7 | 77 | 348 | 124 | 405 | 1.85e-31 | 122 |
| Msa0284860 | MtrunA17_Chr7g0256601 | 31.076 | 251 | 161 | 6 | 107 | 347 | 167 | 415 | 3.96e-31 | 122 |
| Msa0284860 | MtrunA17_Chr7g0256581 | 27.224 | 371 | 241 | 10 | 5 | 349 | 2 | 369 | 7.01e-30 | 117 |
| Msa0284860 | MtrunA17_Chr7g0256571 | 26.738 | 374 | 242 | 11 | 3 | 349 | 1 | 369 | 1.67e-29 | 116 |
| Msa0284860 | MtrunA17_Chr2g0322241 | 31.349 | 252 | 164 | 8 | 105 | 349 | 146 | 395 | 1.77e-29 | 117 |
| Msa0284860 | MtrunA17_Chr4g0062001 | 30.894 | 246 | 146 | 9 | 105 | 347 | 110 | 334 | 5.91e-26 | 106 |
| Msa0284860 | MtrunA17_Chr7g0256561 | 27.302 | 315 | 169 | 7 | 58 | 349 | 58 | 335 | 2.57e-25 | 104 |
| Msa0284860 | MtrunA17_Chr8g0376581 | 27.044 | 318 | 179 | 12 | 58 | 347 | 38 | 330 | 2.10e-24 | 102 |
| Msa0284860 | MtrunA17_Chr5g0443561 | 27.491 | 291 | 160 | 7 | 70 | 349 | 73 | 323 | 3.99e-21 | 92.4 |
| Msa0284860 | MtrunA17_Chr4g0062021 | 26.006 | 323 | 184 | 12 | 55 | 347 | 49 | 346 | 3.23e-20 | 90.5 |
| Msa0284860 | MtrunA17_Chr4g0062031 | 29.412 | 238 | 134 | 8 | 58 | 264 | 39 | 273 | 5.34e-20 | 89.4 |
| Msa0284860 | MtrunA17_Chr4g0020271 | 29.208 | 202 | 121 | 8 | 139 | 339 | 1 | 181 | 7.21e-20 | 86.7 |
| Msa0284860 | MtrunA17_Chr8g0370801 | 34.906 | 106 | 64 | 1 | 116 | 216 | 2 | 107 | 3.99e-19 | 81.6 |
| Msa0284860 | MtrunA17_Chr2g0307721 | 32.704 | 159 | 100 | 5 | 107 | 260 | 120 | 276 | 3.83e-18 | 85.9 |
| Msa0284860 | MtrunA17_Chr2g0307721 | 29.915 | 234 | 134 | 8 | 55 | 260 | 497 | 728 | 2.85e-15 | 77.0 |
| Msa0284860 | MtrunA17_Chr4g0061871 | 39.286 | 84 | 50 | 1 | 177 | 260 | 31 | 113 | 1.11e-13 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0284860 | AT3G51420.1 | 29.722 | 360 | 226 | 11 | 6 | 349 | 13 | 361 | 6.25e-47 | 163 |
| Msa0284860 | AT3G51430.1 | 31.111 | 315 | 194 | 9 | 50 | 350 | 62 | 367 | 7.99e-46 | 160 |
| Msa0284860 | AT3G51430.2 | 31.250 | 320 | 185 | 9 | 50 | 350 | 62 | 365 | 1.09e-45 | 160 |
| Msa0284860 | AT3G51440.1 | 32.550 | 298 | 185 | 7 | 50 | 339 | 62 | 351 | 8.32e-45 | 158 |
| Msa0284860 | AT3G51450.1 | 28.954 | 373 | 229 | 12 | 4 | 351 | 7 | 368 | 3.28e-41 | 148 |
| Msa0284860 | AT3G57030.1 | 29.154 | 319 | 198 | 8 | 58 | 349 | 57 | 374 | 2.31e-32 | 124 |
| Msa0284860 | AT1G08470.1 | 29.771 | 262 | 155 | 5 | 105 | 349 | 140 | 389 | 4.70e-32 | 124 |
| Msa0284860 | AT5G22020.3 | 27.123 | 365 | 212 | 10 | 25 | 349 | 45 | 395 | 1.12e-31 | 123 |
| Msa0284860 | AT5G22020.1 | 27.123 | 365 | 212 | 10 | 25 | 349 | 45 | 395 | 1.12e-31 | 123 |
| Msa0284860 | AT5G22020.2 | 27.123 | 365 | 212 | 10 | 25 | 349 | 45 | 395 | 1.12e-31 | 123 |
| Msa0284860 | AT3G57020.2 | 29.932 | 294 | 192 | 10 | 58 | 339 | 54 | 345 | 4.35e-31 | 120 |
| Msa0284860 | AT3G59530.3 | 29.707 | 239 | 160 | 5 | 88 | 319 | 141 | 378 | 4.92e-30 | 119 |
| Msa0284860 | AT3G59530.2 | 29.707 | 239 | 160 | 5 | 88 | 319 | 141 | 378 | 4.92e-30 | 119 |
| Msa0284860 | AT3G59530.1 | 29.707 | 239 | 160 | 5 | 88 | 319 | 141 | 378 | 4.92e-30 | 119 |
| Msa0284860 | AT3G57020.1 | 30.677 | 251 | 162 | 8 | 99 | 339 | 111 | 359 | 6.98e-29 | 115 |
| Msa0284860 | AT3G57010.1 | 30.328 | 244 | 159 | 8 | 105 | 339 | 119 | 360 | 2.09e-28 | 114 |
| Msa0284860 | AT2G41300.1 | 29.365 | 252 | 163 | 7 | 99 | 339 | 136 | 383 | 3.51e-26 | 108 |
| Msa0284860 | AT2G41290.1 | 28.947 | 266 | 172 | 8 | 99 | 349 | 113 | 376 | 7.18e-25 | 104 |
| Msa0284860 | AT1G74010.1 | 27.244 | 312 | 175 | 10 | 58 | 345 | 38 | 321 | 8.27e-20 | 89.4 |
| Msa0284860 | AT1G74000.1 | 24.922 | 321 | 172 | 11 | 58 | 345 | 41 | 325 | 3.73e-18 | 84.7 |
| Msa0284860 | AT1G74020.1 | 27.344 | 256 | 142 | 8 | 105 | 350 | 107 | 328 | 3.75e-18 | 84.7 |
Find 87 sgRNAs with CRISPR-Local
Find 183 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAATTGTGTAAACCAAATT+TGG | 0.170078 | 2_3:-23845553 | None:intergenic |
| TCAACTCTTAAGATTGAATA+AGG | 0.195212 | 2_3:+23846989 | Msa0284860:three_prime_UTR |
| GCTTGAGGTTAGTGCCATTT+TGG | 0.229465 | 2_3:-23843847 | None:intergenic |
| GAATGGTTAGGAATGGAAAT+TGG | 0.237351 | 2_3:+23844192 | Msa0284860:CDS |
| CGTTATTGTCCTTGATGATT+TGG | 0.257134 | 2_3:+23845644 | Msa0284860:CDS |
| GTTATCCTTTCACAAGTAAA+TGG | 0.270520 | 2_3:+23844508 | Msa0284860:CDS |
| ATATTTGCAGGGTTTGTTAA+AGG | 0.270605 | 2_3:+23844465 | Msa0284860:intron |
| CACGATATAATCTTCATCTT+TGG | 0.286547 | 2_3:-23845691 | None:intergenic |
| TTATCAACACAAACATCTTC+TGG | 0.292495 | 2_3:-23844125 | None:intergenic |
| CATTCGTTTGTGCACCAAAA+TGG | 0.297693 | 2_3:+23843833 | Msa0284860:exon |
| TTGCTCCTGATGGCTCATTC+TGG | 0.309987 | 2_3:+23845960 | Msa0284860:CDS |
| TGTCTGAAACATTGGCTAAA+AGG | 0.318273 | 2_3:+23845872 | Msa0284860:CDS |
| TTCAAGAGAAACTGGATCTA+TGG | 0.319662 | 2_3:-23843922 | None:intergenic |
| CCAAATTTGGTTTACACAAT+TGG | 0.329548 | 2_3:+23845553 | Msa0284860:CDS |
| AGTGTACCAAGTACCAAATT+TGG | 0.334316 | 2_3:+23845540 | Msa0284860:CDS |
| TAAGTGTTTGGATACTTTAG+AGG | 0.335394 | 2_3:-23846732 | None:intergenic |
| GGAATGGAAATTGGGAGAAT+TGG | 0.337340 | 2_3:+23844201 | Msa0284860:CDS |
| AACTTCAGCTGTTGAGTTTG+AGG | 0.342454 | 2_3:+23846886 | Msa0284860:CDS |
| ATTCTGGATCGCTTTGATTC+AGG | 0.356295 | 2_3:+23845976 | Msa0284860:CDS |
| AGTGGTATTTCAAGAGAAAC+TGG | 0.369140 | 2_3:-23843930 | None:intergenic |
| GAATAAAGCTACTAAGTGTT+TGG | 0.377036 | 2_3:-23846744 | None:intergenic |
| ATTTAGTTACACTATTAATC+AGG | 0.378943 | 2_3:-23846781 | None:intergenic |
| GATTTAGGTGTCTGAAACAT+TGG | 0.389467 | 2_3:+23845864 | Msa0284860:intron |
| CATCTCTTGTAGCTGTATAT+AGG | 0.396008 | 2_3:-23844157 | None:intergenic |
| GTCTTAATACTGACTTTGTT+GGG | 0.397231 | 2_3:+23846927 | Msa0284860:CDS |
| TTGTTAAAGGTTACAGAAGA+TGG | 0.397944 | 2_3:+23844478 | Msa0284860:CDS |
| ATAGATAGCTCTTCTTTGCT+TGG | 0.400675 | 2_3:+23844230 | Msa0284860:CDS |
| GGAGCAAGATTAATGTTATC+AGG | 0.407899 | 2_3:-23845944 | None:intergenic |
| CAACTCTTAAGATTGAATAA+GGG | 0.412307 | 2_3:+23846990 | Msa0284860:three_prime_UTR |
| TGTAAACCAAATTTGGTACT+TGG | 0.414925 | 2_3:-23845546 | None:intergenic |
| GAAGATGTTTGTGTTGATAA+AGG | 0.417551 | 2_3:+23844128 | Msa0284860:CDS |
| TTAATCAGGTTAACTAGCCT+TGG | 0.417769 | 2_3:-23846767 | None:intergenic |
| TAATAGAGTGTGATTAAACT+TGG | 0.423287 | 2_3:+23844083 | Msa0284860:intron |
| AGTCTTAATACTGACTTTGT+TGG | 0.427545 | 2_3:+23846926 | Msa0284860:CDS |
| AATGGTTAGGAATGGAAATT+GGG | 0.437047 | 2_3:+23844193 | Msa0284860:CDS |
| AGATGGTTGGATTAAAAGAA+TGG | 0.447747 | 2_3:+23844175 | Msa0284860:CDS |
| GTTGGATTAAAAGAATGGTT+AGG | 0.454450 | 2_3:+23844180 | Msa0284860:CDS |
| TAATCAGGTTAACTAGCCTT+GGG | 0.471304 | 2_3:-23846766 | None:intergenic |
| TTTATTGAAAACCTTCCAGC+TGG | 0.472305 | 2_3:+23845920 | Msa0284860:CDS |
| ATATCGTGGTTTGTGAAACT+TGG | 0.481259 | 2_3:+23845706 | Msa0284860:CDS |
| AACATTAATCTTGCTCCTGA+TGG | 0.489893 | 2_3:+23845950 | Msa0284860:CDS |
| CATTGTTTGTGATACTACCT+TGG | 0.491818 | 2_3:+23844280 | Msa0284860:CDS |
| GAGAACCATTTACTTGTGAA+AGG | 0.496653 | 2_3:-23844513 | None:intergenic |
| GCGATCCAGAATGAGCCATC+AGG | 0.499792 | 2_3:-23845965 | None:intergenic |
| ATTAAAAGAATGGTTAGGAA+TGG | 0.506704 | 2_3:+23844185 | Msa0284860:CDS |
| TGGTTCTATGCACTTTGCAA+TGG | 0.511214 | 2_3:-23846956 | None:intergenic |
| GATGATTTGGCCTTTGCCAA+TGG | 0.513304 | 2_3:+23845657 | Msa0284860:CDS |
| AACTCTTAAGATTGAATAAG+GGG | 0.521254 | 2_3:+23846991 | Msa0284860:three_prime_UTR |
| AAAAGTTTGGTGATAATGAT+GGG | 0.521526 | 2_3:+23846846 | Msa0284860:CDS |
| AGTCAGTATTAAGACTTCCT+AGG | 0.523122 | 2_3:-23846919 | None:intergenic |
| TCAAGAGAAACTGGATCTAT+GGG | 0.525446 | 2_3:-23843921 | None:intergenic |
| TTTGGACAGTGCAACACCAT+TGG | 0.529499 | 2_3:-23845673 | None:intergenic |
| CAAATCATCAAGGACAATAA+CGG | 0.530113 | 2_3:-23845643 | None:intergenic |
| TAAGAGTTGAACTACTTCAC+TGG | 0.531085 | 2_3:-23846976 | None:intergenic |
| TTATTATTCATATCAGTGAC+AGG | 0.532705 | 2_3:-23847108 | None:intergenic |
| GCAGGTGACTTCTGAAAGGA+TGG | 0.538860 | 2_3:+23846697 | Msa0284860:intron |
| AGGTGACTTCTGAAAGGATG+GGG | 0.551032 | 2_3:+23846699 | Msa0284860:intron |
| ACTTAGTAGCTTTATTCCCA+AGG | 0.553760 | 2_3:+23846750 | Msa0284860:CDS |
| TGTTATCAGGTCCAGCTGGA+AGG | 0.568452 | 2_3:-23845931 | None:intergenic |
| ATACAGCTACAAGAGATGGT+TGG | 0.570015 | 2_3:+23844162 | Msa0284860:CDS |
| GGAATCACTACATCTAAAGA+TGG | 0.570283 | 2_3:+23844251 | Msa0284860:CDS |
| AGTGTGATTAAACTTGGAGA+AGG | 0.571921 | 2_3:+23844089 | Msa0284860:CDS |
| TTAATGTTATCAGGTCCAGC+TGG | 0.572564 | 2_3:-23845935 | None:intergenic |
| TTGGTCGAAGATACAGAAAG+TGG | 0.582391 | 2_3:-23843948 | None:intergenic |
| CAGGTGACTTCTGAAAGGAT+GGG | 0.582391 | 2_3:+23846698 | Msa0284860:intron |
| TAGTGTAACTAAATCTGCAA+TGG | 0.584002 | 2_3:+23846790 | Msa0284860:CDS |
| CTATATACAGCTACAAGAGA+TGG | 0.586350 | 2_3:+23844158 | Msa0284860:CDS |
| GTGCTTGAGGCAAGACCACA+TGG | 0.588367 | 2_3:+23845585 | Msa0284860:CDS |
| AATGGCACTAACCTCAAGCT+TGG | 0.590599 | 2_3:+23843851 | Msa0284860:exon |
| TGGCAAAGGCCAAATCATCA+AGG | 0.590889 | 2_3:-23845653 | None:intergenic |
| GATATAATAGAAGCATCAGA+TGG | 0.591142 | 2_3:+23845504 | Msa0284860:CDS |
| TTTGAGGACAATCTTTACCT+AGG | 0.592675 | 2_3:+23846902 | Msa0284860:CDS |
| GATGTTTGTGTTGATAAAGG+TGG | 0.593906 | 2_3:+23844131 | Msa0284860:CDS |
| ATAACGGTTTCATTTGACAT+GGG | 0.603716 | 2_3:-23845627 | None:intergenic |
| AATAACGGTTTCATTTGACA+TGG | 0.605627 | 2_3:-23845628 | None:intergenic |
| TACTATATATATATTAGTAG+AGG | 0.612954 | 2_3:+23843774 | Msa0284860:five_prime_UTR |
| CAGTGCAACACCATTGGCAA+AGG | 0.613191 | 2_3:-23845667 | None:intergenic |
| TACCTTAAAAGTTGTCCATG+TGG | 0.628210 | 2_3:-23845600 | None:intergenic |
| TACATGCGATATTAGTTGCG+AGG | 0.630721 | 2_3:+23847131 | Msa0284860:three_prime_UTR |
| TGGCTAAAAGGTATTAACAA+AGG | 0.633072 | 2_3:+23845884 | Msa0284860:CDS |
| ATCACTACATCTAAAGATGG+TGG | 0.642182 | 2_3:+23844254 | Msa0284860:CDS |
| CAAAGATGAAGATTATATCG+TGG | 0.647875 | 2_3:+23845692 | Msa0284860:CDS |
| TGTAACTAAATCTGCAATGG+TGG | 0.654164 | 2_3:+23846793 | Msa0284860:CDS |
| AGCTGCTAGAACCAAGCTTG+AGG | 0.656502 | 2_3:-23843862 | None:intergenic |
| GTGGTGAAAGTGACATCTGA+AGG | 0.672903 | 2_3:+23846812 | Msa0284860:CDS |
| TTGGTATCTAGATGTGCTTG+AGG | 0.682578 | 2_3:+23845572 | Msa0284860:CDS |
| TGTTGCAGGTGACTTCTGAA+AGG | 0.687287 | 2_3:+23846693 | Msa0284860:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTGATTTTTTTTTTTGA+AGG | - | chr2_3:23843713-23843732 | None:intergenic | 10.0% |
| !! | TCATAATAAATTATTTGTTT+GGG | - | chr2_3:23844552-23844571 | None:intergenic | 10.0% |
| !!! | ATAAATGTTTACTTTTTTTT+AGG | + | chr2_3:23845006-23845025 | Msa0284860:intron | 10.0% |
| !!! | TAAATGTTTACTTTTTTTTA+GGG | + | chr2_3:23845007-23845026 | Msa0284860:intron | 10.0% |
| !!! | TAATAGTAACTTTAAAATTA+AGG | + | chr2_3:23845238-23845257 | Msa0284860:intron | 10.0% |
| !!! | AATAGTAACTTTAAAATTAA+GGG | + | chr2_3:23845239-23845258 | Msa0284860:intron | 10.0% |
| !!! | ATTATTCGATAAATTTTAAT+AGG | - | chr2_3:23845405-23845424 | None:intergenic | 10.0% |
| !! | AAAATTTATCGAATAATTTA+CGG | + | chr2_3:23845408-23845427 | Msa0284860:intron | 10.0% |
| !! | GATACTAAAAAAAATATTAA+GGG | - | chr2_3:23846029-23846048 | None:intergenic | 10.0% |
| !! | AGATACTAAAAAAAATATTA+AGG | - | chr2_3:23846030-23846049 | None:intergenic | 10.0% |
| !!! | ATTTATATTGAAATTTTGAT+TGG | + | chr2_3:23846612-23846631 | Msa0284860:intron | 10.0% |
| !!! | TATAACCAAAATTATTTTTG+CGG | - | chr2_3:23843756-23843775 | None:intergenic | 15.0% |
| !! | TACTATATATATATTAGTAG+AGG | + | chr2_3:23843774-23843793 | Msa0284860:five_prime_UTR | 15.0% |
| !! | CTCATAATAAATTATTTGTT+TGG | - | chr2_3:23844553-23844572 | None:intergenic | 15.0% |
| !! | ATTTATTAGAGTGTAAAAAA+AGG | - | chr2_3:23844992-23845011 | None:intergenic | 15.0% |
| !!! | AAATGTTTACTTTTTTTTAG+GGG | + | chr2_3:23845008-23845027 | Msa0284860:intron | 15.0% |
| !! | GAAATTTATTTGTAATCATA+TGG | - | chr2_3:23845344-23845363 | None:intergenic | 15.0% |
| !! | ATGATTACAAATAAATTTCT+TGG | + | chr2_3:23845345-23845364 | Msa0284860:intron | 15.0% |
| !! | TGATTACAAATAAATTTCTT+GGG | + | chr2_3:23845346-23845365 | Msa0284860:intron | 15.0% |
| !!! | TACAACTTTTTTTTAATCTA+AGG | + | chr2_3:23845378-23845397 | Msa0284860:intron | 15.0% |
| !!! | TTGAAACGAATTTTATTATA+AGG | + | chr2_3:23845436-23845455 | Msa0284860:intron | 15.0% |
| !! | TAACACATAATTATATTTGC+AGG | + | chr2_3:23844453-23844472 | Msa0284860:intron | 20.0% |
| !! | AACACATAATTATATTTGCA+GGG | + | chr2_3:23844454-23844473 | Msa0284860:intron | 20.0% |
| !!! | ATACCCAATTCTTAAAATTT+TGG | - | chr2_3:23844664-23844683 | None:intergenic | 20.0% |
| !! | ACTGTCAAAAAAGAATATAT+TGG | - | chr2_3:23844700-23844719 | None:intergenic | 20.0% |
| !!! | AAGCTTTGATAGAATATATT+GGG | - | chr2_3:23844726-23844745 | None:intergenic | 20.0% |
| !!! | AAAGCTTTGATAGAATATAT+TGG | - | chr2_3:23844727-23844746 | None:intergenic | 20.0% |
| !!! | AAACTATGATTGTTTTGATA+AGG | - | chr2_3:23844815-23844834 | None:intergenic | 20.0% |
| !! | CTATTAATGCTGAAATAATT+TGG | + | chr2_3:23844906-23844925 | Msa0284860:intron | 20.0% |
| !!! | TATTTTTTTTTCCTTGTCAA+TGG | + | chr2_3:23844961-23844980 | Msa0284860:intron | 20.0% |
| !! | TATAAAATGACCACAAAAAA+TGG | + | chr2_3:23845124-23845143 | Msa0284860:intron | 20.0% |
| !! | TAATTTCATCAATAACTTCA+AGG | + | chr2_3:23846351-23846370 | Msa0284860:intron | 20.0% |
| !! | ATTTAGTTACACTATTAATC+AGG | - | chr2_3:23846784-23846803 | None:intergenic | 20.0% |
| !! | TAAGACCGCAAAAATAATTT+TGG | + | chr2_3:23843748-23843767 | Msa0284860:five_prime_UTR | 25.0% |
| ! | TAATAGAGTGTGATTAAACT+TGG | + | chr2_3:23844083-23844102 | Msa0284860:intron | 25.0% |
| ! | ATTAAAAGAATGGTTAGGAA+TGG | + | chr2_3:23844185-23844204 | Msa0284860:CDS | 25.0% |
| ! | TTCCAATAAACATATATACG+TGG | + | chr2_3:23844340-23844359 | Msa0284860:intron | 25.0% |
| ! | TGTATTACTTAATCTAAGCA+TGG | - | chr2_3:23844606-23844625 | None:intergenic | 25.0% |
| ! | GAAATTAACACATCACAATT+AGG | + | chr2_3:23844637-23844656 | Msa0284860:intron | 25.0% |
| !!! | AGGTCCAAAATTTTAAGAAT+TGG | + | chr2_3:23844657-23844676 | Msa0284860:intron | 25.0% |
| !!! | GGTCCAAAATTTTAAGAATT+GGG | + | chr2_3:23844658-23844677 | Msa0284860:intron | 25.0% |
| ! | AAAAGAATATATTGGACAGA+AGG | - | chr2_3:23844692-23844711 | None:intergenic | 25.0% |
| !! | AACAATCATAGTTTTCAATC+AGG | + | chr2_3:23844821-23844840 | Msa0284860:intron | 25.0% |
| !!! | GCGAATTTTAGTTATAATTG+TGG | - | chr2_3:23844855-23844874 | None:intergenic | 25.0% |
| !!! | TTTTGTGGTCATTTTATAGT+CGG | - | chr2_3:23845122-23845141 | None:intergenic | 25.0% |
| ! | TATTATATCATCTGCAAATC+TGG | - | chr2_3:23845493-23845512 | None:intergenic | 25.0% |
| !! | GTTTTTCATGAATCAGATTT+AGG | + | chr2_3:23845849-23845868 | Msa0284860:intron | 25.0% |
| ! | AAAATATTAAGGGAGTTCAA+GGG | - | chr2_3:23846019-23846038 | None:intergenic | 25.0% |
| ! | AAAAATATTAAGGGAGTTCA+AGG | - | chr2_3:23846020-23846039 | None:intergenic | 25.0% |
| !! | TAGTAGTGTTAAATCTTTTG+AGG | + | chr2_3:23846230-23846249 | Msa0284860:intron | 25.0% |
| !! | AGTAGTGTTAAATCTTTTGA+GGG | + | chr2_3:23846231-23846250 | Msa0284860:intron | 25.0% |
| ! | GTAAATTAGAGACGATTAAA+AGG | + | chr2_3:23846380-23846399 | Msa0284860:intron | 25.0% |
| !!! | TTTCAATCTGAAGTTTTGAT+TGG | + | chr2_3:23846576-23846595 | Msa0284860:intron | 25.0% |
| ! | ATTGGTTATGTTATGCAATA+AGG | + | chr2_3:23846630-23846649 | Msa0284860:intron | 25.0% |
| ! | TATATGTTAATTGATGTTGC+AGG | + | chr2_3:23846679-23846698 | Msa0284860:intron | 25.0% |
| ! | GGCAATATTATCAAAAAGTT+TGG | + | chr2_3:23846833-23846852 | Msa0284860:CDS | 25.0% |
| !! | AAAAAGTTTGGTGATAATGA+TGG | + | chr2_3:23846845-23846864 | Msa0284860:CDS | 25.0% |
| !! | AAAAGTTTGGTGATAATGAT+GGG | + | chr2_3:23846846-23846865 | Msa0284860:CDS | 25.0% |
| ! | TCAACTCTTAAGATTGAATA+AGG | + | chr2_3:23846989-23847008 | Msa0284860:three_prime_UTR | 25.0% |
| ! | CAACTCTTAAGATTGAATAA+GGG | + | chr2_3:23846990-23847009 | Msa0284860:three_prime_UTR | 25.0% |
| ! | AACTCTTAAGATTGAATAAG+GGG | + | chr2_3:23846991-23847010 | Msa0284860:three_prime_UTR | 25.0% |
| !! | AATACATTCCTAGATGTTTT+TGG | - | chr2_3:23847073-23847092 | None:intergenic | 25.0% |
| ! | TTATTATTCATATCAGTGAC+AGG | - | chr2_3:23847111-23847130 | None:intergenic | 25.0% |
| ! | CTTAAGTTTTCACCTGTAAT+TGG | - | chr2_3:23843980-23843999 | None:intergenic | 30.0% |
| CAATTACAGGTGAAAACTTA+AGG | + | chr2_3:23843978-23843997 | Msa0284860:intron | 30.0% | |
| TTATCAACACAAACATCTTC+TGG | - | chr2_3:23844128-23844147 | None:intergenic | 30.0% | |
| ! | GAAGATGTTTGTGTTGATAA+AGG | + | chr2_3:23844128-23844147 | Msa0284860:CDS | 30.0% |
| AGATGGTTGGATTAAAAGAA+TGG | + | chr2_3:23844175-23844194 | Msa0284860:CDS | 30.0% | |
| GTTGGATTAAAAGAATGGTT+AGG | + | chr2_3:23844180-23844199 | Msa0284860:CDS | 30.0% | |
| AATGGTTAGGAATGGAAATT+GGG | + | chr2_3:23844193-23844212 | Msa0284860:CDS | 30.0% | |
| CAAGCAAGAATTATTTACCA+AGG | - | chr2_3:23844300-23844319 | None:intergenic | 30.0% | |
| CTTGGTAAATAATTCTTGCT+TGG | + | chr2_3:23844298-23844317 | Msa0284860:intron | 30.0% | |
| TGCCACGTATATATGTTTAT+TGG | - | chr2_3:23844345-23844364 | None:intergenic | 30.0% | |
| ATAAACATATATACGTGGCA+TGG | + | chr2_3:23844345-23844364 | Msa0284860:intron | 30.0% | |
| !! | ATATTTGCAGGGTTTGTTAA+AGG | + | chr2_3:23844465-23844484 | Msa0284860:intron | 30.0% |
| TTGTTAAAGGTTACAGAAGA+TGG | + | chr2_3:23844478-23844497 | Msa0284860:CDS | 30.0% | |
| GTTATCCTTTCACAAGTAAA+TGG | + | chr2_3:23844508-23844527 | Msa0284860:CDS | 30.0% | |
| ATGGATGAACTGAACAAAAT+AGG | - | chr2_3:23844587-23844606 | None:intergenic | 30.0% | |
| CTTTGATAGAATATATTGGG+TGG | - | chr2_3:23844723-23844742 | None:intergenic | 30.0% | |
| TAACTCCAACTTCAACAATA+TGG | + | chr2_3:23844753-23844772 | Msa0284860:intron | 30.0% | |
| ATATGCCATATTGTTGAAGT+TGG | - | chr2_3:23844761-23844780 | None:intergenic | 30.0% | |
| AATTGAGCTAAAAGCTTCTT+GGG | - | chr2_3:23844787-23844806 | None:intergenic | 30.0% | |
| AAAAGGTTATACCATTGACA+AGG | - | chr2_3:23844975-23844994 | None:intergenic | 30.0% | |
| AAAATGACCACAAAAAATGG+AGG | + | chr2_3:23845127-23845146 | Msa0284860:intron | 30.0% | |
| !! | ACTTGTTGTACAAGTAAACA+TGG | + | chr2_3:23845157-23845176 | Msa0284860:intron | 30.0% |
| ! | CTTGTTGTACAAGTAAACAT+GGG | + | chr2_3:23845158-23845177 | Msa0284860:intron | 30.0% |
| !! | GATATAATAGAAGCATCAGA+TGG | + | chr2_3:23845504-23845523 | Msa0284860:CDS | 30.0% |
| TGTAAACCAAATTTGGTACT+TGG | - | chr2_3:23845549-23845568 | None:intergenic | 30.0% | |
| CCAATTGTGTAAACCAAATT+TGG | - | chr2_3:23845556-23845575 | None:intergenic | 30.0% | |
| ! | CCAAATTTGGTTTACACAAT+TGG | + | chr2_3:23845553-23845572 | Msa0284860:CDS | 30.0% |
| ATAACGGTTTCATTTGACAT+GGG | - | chr2_3:23845630-23845649 | None:intergenic | 30.0% | |
| AATAACGGTTTCATTTGACA+TGG | - | chr2_3:23845631-23845650 | None:intergenic | 30.0% | |
| CAAATCATCAAGGACAATAA+CGG | - | chr2_3:23845646-23845665 | None:intergenic | 30.0% | |
| CACGATATAATCTTCATCTT+TGG | - | chr2_3:23845694-23845713 | None:intergenic | 30.0% | |
| CAAAGATGAAGATTATATCG+TGG | + | chr2_3:23845692-23845711 | Msa0284860:CDS | 30.0% | |
| !! | TGGCTAAAAGGTATTAACAA+AGG | + | chr2_3:23845884-23845903 | Msa0284860:CDS | 30.0% |
| !! | ATTAATACCTTGAGTTGAGT+GGG | - | chr2_3:23846280-23846299 | None:intergenic | 30.0% |
| !! | AATTAATACCTTGAGTTGAG+TGG | - | chr2_3:23846281-23846300 | None:intergenic | 30.0% |
| TAAGTGTTTGGATACTTTAG+AGG | - | chr2_3:23846735-23846754 | None:intergenic | 30.0% | |
| GAATAAAGCTACTAAGTGTT+TGG | - | chr2_3:23846747-23846766 | None:intergenic | 30.0% | |
| TAGTGTAACTAAATCTGCAA+TGG | + | chr2_3:23846790-23846809 | Msa0284860:CDS | 30.0% | |
| !! | AGTCTTAATACTGACTTTGT+TGG | + | chr2_3:23846926-23846945 | Msa0284860:CDS | 30.0% |
| !! | GTCTTAATACTGACTTTGTT+GGG | + | chr2_3:23846927-23846946 | Msa0284860:CDS | 30.0% |
| GATTTAGACCAAAAACATCT+AGG | + | chr2_3:23847062-23847081 | Msa0284860:three_prime_UTR | 30.0% | |
| TCAAGAGAAACTGGATCTAT+GGG | - | chr2_3:23843924-23843943 | None:intergenic | 35.0% | |
| TTCAAGAGAAACTGGATCTA+TGG | - | chr2_3:23843925-23843944 | None:intergenic | 35.0% | |
| AGTGGTATTTCAAGAGAAAC+TGG | - | chr2_3:23843933-23843952 | None:intergenic | 35.0% | |
| GACCAAAAACAACCAATTAC+AGG | + | chr2_3:23843965-23843984 | Msa0284860:CDS | 35.0% | |
| !! | CACCTGTAATTGGTTGTTTT+TGG | - | chr2_3:23843970-23843989 | None:intergenic | 35.0% |
| AGTGTGATTAAACTTGGAGA+AGG | + | chr2_3:23844089-23844108 | Msa0284860:CDS | 35.0% | |
| ! | GATGTTTGTGTTGATAAAGG+TGG | + | chr2_3:23844131-23844150 | Msa0284860:CDS | 35.0% |
| CATCTCTTGTAGCTGTATAT+AGG | - | chr2_3:23844160-23844179 | None:intergenic | 35.0% | |
| CTATATACAGCTACAAGAGA+TGG | + | chr2_3:23844158-23844177 | Msa0284860:CDS | 35.0% | |
| GAATGGTTAGGAATGGAAAT+TGG | + | chr2_3:23844192-23844211 | Msa0284860:CDS | 35.0% | |
| ATAGATAGCTCTTCTTTGCT+TGG | + | chr2_3:23844230-23844249 | Msa0284860:CDS | 35.0% | |
| GGAATCACTACATCTAAAGA+TGG | + | chr2_3:23844251-23844270 | Msa0284860:CDS | 35.0% | |
| ATCACTACATCTAAAGATGG+TGG | + | chr2_3:23844254-23844273 | Msa0284860:CDS | 35.0% | |
| CATTGTTTGTGATACTACCT+TGG | + | chr2_3:23844280-23844299 | Msa0284860:CDS | 35.0% | |
| GAGAACCATTTACTTGTGAA+AGG | - | chr2_3:23844516-23844535 | None:intergenic | 35.0% | |
| CAATTGAGCTAAAAGCTTCT+TGG | - | chr2_3:23844788-23844807 | None:intergenic | 35.0% | |
| GGGGTCAATAAATATTTACC+TGG | + | chr2_3:23845027-23845046 | Msa0284860:intron | 35.0% | |
| AGTGTACCAAGTACCAAATT+TGG | + | chr2_3:23845540-23845559 | Msa0284860:CDS | 35.0% | |
| TACCTTAAAAGTTGTCCATG+TGG | - | chr2_3:23845603-23845622 | None:intergenic | 35.0% | |
| ! | CGTTATTGTCCTTGATGATT+TGG | + | chr2_3:23845644-23845663 | Msa0284860:CDS | 35.0% |
| ! | ATATCGTGGTTTGTGAAACT+TGG | + | chr2_3:23845706-23845725 | Msa0284860:CDS | 35.0% |
| ! | GATTTAGGTGTCTGAAACAT+TGG | + | chr2_3:23845864-23845883 | Msa0284860:intron | 35.0% |
| ! | TGTCTGAAACATTGGCTAAA+AGG | + | chr2_3:23845872-23845891 | Msa0284860:CDS | 35.0% |
| TTTATTGAAAACCTTCCAGC+TGG | + | chr2_3:23845920-23845939 | Msa0284860:CDS | 35.0% | |
| GGAGCAAGATTAATGTTATC+AGG | - | chr2_3:23845947-23845966 | None:intergenic | 35.0% | |
| AACATTAATCTTGCTCCTGA+TGG | + | chr2_3:23845950-23845969 | Msa0284860:CDS | 35.0% | |
| ! | ATGAGTGTTGTCAACACTTT+GGG | + | chr2_3:23846203-23846222 | Msa0284860:intron | 35.0% |
| TTTGACGTTCGTATCTGTAT+CGG | - | chr2_3:23846461-23846480 | None:intergenic | 35.0% | |
| GAAAATAACCACATGTGTGT+CGG | + | chr2_3:23846534-23846553 | Msa0284860:intron | 35.0% | |
| !!! | CAATCTGAAGTTTTGATTGG+CGG | + | chr2_3:23846579-23846598 | Msa0284860:intron | 35.0% |
| !! | ACTTAGTAGCTTTATTCCCA+AGG | + | chr2_3:23846750-23846769 | Msa0284860:CDS | 35.0% |
| !! | TAATCAGGTTAACTAGCCTT+GGG | - | chr2_3:23846769-23846788 | None:intergenic | 35.0% |
| ! | TTAATCAGGTTAACTAGCCT+TGG | - | chr2_3:23846770-23846789 | None:intergenic | 35.0% |
| TGTAACTAAATCTGCAATGG+TGG | + | chr2_3:23846793-23846812 | Msa0284860:CDS | 35.0% | |
| TTTGAGGACAATCTTTACCT+AGG | + | chr2_3:23846902-23846921 | Msa0284860:CDS | 35.0% | |
| AGTCAGTATTAAGACTTCCT+AGG | - | chr2_3:23846922-23846941 | None:intergenic | 35.0% | |
| TAAGAGTTGAACTACTTCAC+TGG | - | chr2_3:23846979-23846998 | None:intergenic | 35.0% | |
| CATTCGTTTGTGCACCAAAA+TGG | + | chr2_3:23843833-23843852 | Msa0284860:exon | 40.0% | |
| TTGGTCGAAGATACAGAAAG+TGG | - | chr2_3:23843951-23843970 | None:intergenic | 40.0% | |
| ATACAGCTACAAGAGATGGT+TGG | + | chr2_3:23844162-23844181 | Msa0284860:CDS | 40.0% | |
| GGAATGGAAATTGGGAGAAT+TGG | + | chr2_3:23844201-23844220 | Msa0284860:CDS | 40.0% | |
| CTTGCTACAACGATATACTG+AGG | + | chr2_3:23844391-23844410 | Msa0284860:intron | 40.0% | |
| !! | ACCTGGTGAAGAGTACTAAT+CGG | + | chr2_3:23845044-23845063 | Msa0284860:intron | 40.0% |
| !!! | TGCATGTCCTCCATTTTTTG+TGG | - | chr2_3:23845137-23845156 | None:intergenic | 40.0% |
| TTGGTATCTAGATGTGCTTG+AGG | + | chr2_3:23845572-23845591 | Msa0284860:CDS | 40.0% | |
| ! | GACCACATGGACAACTTTTA+AGG | + | chr2_3:23845598-23845617 | Msa0284860:CDS | 40.0% |
| TTAATGTTATCAGGTCCAGC+TGG | - | chr2_3:23845938-23845957 | None:intergenic | 40.0% | |
| ATTCTGGATCGCTTTGATTC+AGG | + | chr2_3:23845976-23845995 | Msa0284860:CDS | 40.0% | |
| ! | CATGAGTGTTGTCAACACTT+TGG | + | chr2_3:23846202-23846221 | Msa0284860:intron | 40.0% |
| ACCTCACAGTCATTGTGAAT+CGG | - | chr2_3:23846328-23846347 | None:intergenic | 40.0% | |
| AACTTCAGCTGTTGAGTTTG+AGG | + | chr2_3:23846886-23846905 | Msa0284860:CDS | 40.0% | |
| ! | TGGTTCTATGCACTTTGCAA+TGG | - | chr2_3:23846959-23846978 | None:intergenic | 40.0% |
| TACATGCGATATTAGTTGCG+AGG | + | chr2_3:23847131-23847150 | Msa0284860:three_prime_UTR | 40.0% | |
| !!! | GCTTGAGGTTAGTGCCATTT+TGG | - | chr2_3:23843850-23843869 | None:intergenic | 45.0% |
| AATGGCACTAACCTCAAGCT+TGG | + | chr2_3:23843851-23843870 | Msa0284860:exon | 45.0% | |
| TCCGATTAGTACTCTTCACC+AGG | - | chr2_3:23845048-23845067 | None:intergenic | 45.0% | |
| TGGCAAAGGCCAAATCATCA+AGG | - | chr2_3:23845656-23845675 | None:intergenic | 45.0% | |
| ! | GATGATTTGGCCTTTGCCAA+TGG | + | chr2_3:23845657-23845676 | Msa0284860:CDS | 45.0% |
| TTTGGACAGTGCAACACCAT+TGG | - | chr2_3:23845676-23845695 | None:intergenic | 45.0% | |
| CCTCACAGTCATTGTGAATC+GGG | - | chr2_3:23846327-23846346 | None:intergenic | 45.0% | |
| ACGAACGTCAAATACGAAGC+TGG | + | chr2_3:23846469-23846488 | Msa0284860:intron | 45.0% | |
| TGTTGCAGGTGACTTCTGAA+AGG | + | chr2_3:23846693-23846712 | Msa0284860:intron | 45.0% | |
| ! | CAGGTGACTTCTGAAAGGAT+GGG | + | chr2_3:23846698-23846717 | Msa0284860:intron | 45.0% |
| ! | AGGTGACTTCTGAAAGGATG+GGG | + | chr2_3:23846699-23846718 | Msa0284860:intron | 45.0% |
| GTGGTGAAAGTGACATCTGA+AGG | + | chr2_3:23846812-23846831 | Msa0284860:CDS | 45.0% | |
| AGCTGCTAGAACCAAGCTTG+AGG | - | chr2_3:23843865-23843884 | None:intergenic | 50.0% | |
| CAGTGCAACACCATTGGCAA+AGG | - | chr2_3:23845670-23845689 | None:intergenic | 50.0% | |
| TGTTATCAGGTCCAGCTGGA+AGG | - | chr2_3:23845934-23845953 | None:intergenic | 50.0% | |
| TTGCTCCTGATGGCTCATTC+TGG | + | chr2_3:23845960-23845979 | Msa0284860:CDS | 50.0% | |
| TTGAGTGGGACCACAACATG+TGG | - | chr2_3:23846266-23846285 | None:intergenic | 50.0% | |
| TTGTGGTCCCACTCAACTCA+AGG | + | chr2_3:23846270-23846289 | Msa0284860:intron | 50.0% | |
| CCCGATTCACAATGACTGTG+AGG | + | chr2_3:23846324-23846343 | Msa0284860:intron | 50.0% | |
| ! | AACCACATGTGTGTCGGTGT+TGG | + | chr2_3:23846540-23846559 | Msa0284860:intron | 50.0% |
| ! | GCAGGTGACTTCTGAAAGGA+TGG | + | chr2_3:23846697-23846716 | Msa0284860:intron | 50.0% |
| GTGCTTGAGGCAAGACCACA+TGG | + | chr2_3:23845585-23845604 | Msa0284860:CDS | 55.0% | |
| GCGATCCAGAATGAGCCATC+AGG | - | chr2_3:23845968-23845987 | None:intergenic | 55.0% | |
| GTGAGTCCTGCCACATGTTG+TGG | + | chr2_3:23846253-23846272 | Msa0284860:intron | 55.0% | |
| GTCCAACACCGACACACATG+TGG | - | chr2_3:23846545-23846564 | None:intergenic | 55.0% | |
| GTGGGACCACAACATGTGGC+AGG | - | chr2_3:23846262-23846281 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 23843693 | 23847160 | 23843693 | ID=Msa0284860;Name=Msa0284860 |
| chr2_3 | mRNA | 23843693 | 23847160 | 23843693 | ID=Msa0284860-mRNA-1;Parent=Msa0284860;Name=Msa0284860-mRNA-1;_AED=0.28;_eAED=0.28;_QI=159|1|1|1|1|1|6|187|352 |
| chr2_3 | exon | 23843693 | 23843986 | 23843693 | ID=Msa0284860-mRNA-1:exon:9025;Parent=Msa0284860-mRNA-1 |
| chr2_3 | exon | 23844089 | 23844301 | 23844089 | ID=Msa0284860-mRNA-1:exon:9026;Parent=Msa0284860-mRNA-1 |
| chr2_3 | exon | 23844475 | 23844542 | 23844475 | ID=Msa0284860-mRNA-1:exon:9027;Parent=Msa0284860-mRNA-1 |
| chr2_3 | exon | 23845494 | 23845730 | 23845494 | ID=Msa0284860-mRNA-1:exon:9028;Parent=Msa0284860-mRNA-1 |
| chr2_3 | exon | 23845865 | 23845997 | 23845865 | ID=Msa0284860-mRNA-1:exon:9029;Parent=Msa0284860-mRNA-1 |
| chr2_3 | exon | 23846701 | 23847160 | 23846701 | ID=Msa0284860-mRNA-1:exon:9030;Parent=Msa0284860-mRNA-1 |
| chr2_3 | five_prime_UTR | 23843693 | 23843851 | 23843693 | ID=Msa0284860-mRNA-1:five_prime_utr;Parent=Msa0284860-mRNA-1 |
| chr2_3 | CDS | 23843852 | 23843986 | 23843852 | ID=Msa0284860-mRNA-1:cds;Parent=Msa0284860-mRNA-1 |
| chr2_3 | CDS | 23844089 | 23844301 | 23844089 | ID=Msa0284860-mRNA-1:cds;Parent=Msa0284860-mRNA-1 |
| chr2_3 | CDS | 23844475 | 23844542 | 23844475 | ID=Msa0284860-mRNA-1:cds;Parent=Msa0284860-mRNA-1 |
| chr2_3 | CDS | 23845494 | 23845730 | 23845494 | ID=Msa0284860-mRNA-1:cds;Parent=Msa0284860-mRNA-1 |
| chr2_3 | CDS | 23845865 | 23845997 | 23845865 | ID=Msa0284860-mRNA-1:cds;Parent=Msa0284860-mRNA-1 |
| chr2_3 | CDS | 23846701 | 23846973 | 23846701 | ID=Msa0284860-mRNA-1:cds;Parent=Msa0284860-mRNA-1 |
| chr2_3 | three_prime_UTR | 23846974 | 23847160 | 23846974 | ID=Msa0284860-mRNA-1:three_prime_utr;Parent=Msa0284860-mRNA-1 |
| Gene Sequence |
| Protein sequence |
