Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0203170 | XP_003595315.1 | 97.727 | 352 | 8 | 0 | 1 | 352 | 1 | 352 | 0.0 | 705 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0203170 | sp|Q9SD07|SSL4_ARATH | 29.722 | 360 | 226 | 11 | 6 | 349 | 13 | 361 | 7.23e-47 | 166 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0203170 | G7IGG4 | 97.727 | 352 | 8 | 0 | 1 | 352 | 1 | 352 | 0.0 | 705 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0011720 | Msa0203170 | 0.811596 | 6.469310e-51 | -8.615850e-47 |
| Msa0011850 | Msa0203170 | 0.827276 | 1.710388e-54 | -8.615850e-47 |
| Msa0050730 | Msa0203170 | 0.846808 | 1.720634e-59 | -8.615850e-47 |
| Msa0050760 | Msa0203170 | 0.848164 | 7.297929e-60 | -8.615850e-47 |
| Msa0057520 | Msa0203170 | 0.804675 | 1.927758e-49 | -8.615850e-47 |
| Msa0060600 | Msa0203170 | 0.810297 | 1.236565e-50 | -8.615850e-47 |
| Msa0089380 | Msa0203170 | 0.804570 | 2.027933e-49 | -8.615850e-47 |
| Msa0094100 | Msa0203170 | 0.815507 | 8.921483e-52 | -8.615850e-47 |
| Msa0105340 | Msa0203170 | 0.820541 | 6.494446e-53 | -8.615850e-47 |
| Msa0105420 | Msa0203170 | 0.828000 | 1.146634e-54 | -8.615850e-47 |
| Msa0140910 | Msa0203170 | 0.829307 | 5.539657e-55 | -8.615850e-47 |
| Msa0145310 | Msa0203170 | 0.814350 | 1.611094e-51 | -8.615850e-47 |
| Msa0151690 | Msa0203170 | 0.808771 | 2.629120e-50 | -8.615850e-47 |
| Msa0185480 | Msa0203170 | 0.825462 | 4.626823e-54 | -8.615850e-47 |
| Msa0191190 | Msa0203170 | 0.818594 | 1.806615e-52 | -8.615850e-47 |
| Msa0203170 | Msa0211010 | 0.819215 | 1.305334e-52 | -8.615850e-47 |
| Msa0203170 | Msa0217400 | 0.837563 | 4.826998e-57 | -8.615850e-47 |
| Msa0203170 | Msa0223380 | 0.800520 | 1.387068e-48 | -8.615850e-47 |
| Msa0203170 | Msa0246290 | 0.817084 | 3.960616e-52 | -8.615850e-47 |
| Msa0203170 | Msa0253370 | 0.800870 | 1.176701e-48 | -8.615850e-47 |
| Msa0203170 | Msa0257250 | 0.810062 | 1.389293e-50 | -8.615850e-47 |
| Msa0203170 | Msa0265820 | 0.813541 | 2.429787e-51 | -8.615850e-47 |
| Msa0203170 | Msa0282250 | 0.801459 | 8.914284e-49 | -8.615850e-47 |
| Msa0203170 | Msa0284860 | 0.907260 | 6.139199e-81 | -8.615850e-47 |
| Msa0203170 | Msa0290650 | 0.812535 | 4.036829e-51 | -8.615850e-47 |
| Msa0203170 | Msa0292180 | 0.832833 | 7.542966e-56 | -8.615850e-47 |
| Msa0203170 | Msa0296560 | 0.820398 | 7.005996e-53 | -8.615850e-47 |
| Msa0203170 | Msa0296760 | 0.815465 | 9.118632e-52 | -8.615850e-47 |
| Msa0203170 | Msa0311920 | 0.808103 | 3.650938e-50 | -8.615850e-47 |
| Msa0203170 | Msa0323080 | 0.809470 | 1.862828e-50 | -8.615850e-47 |
| Msa0203170 | Msa0323610 | 0.812194 | 4.793237e-51 | -8.615850e-47 |
| Msa0203170 | Msa0323620 | 0.803389 | 3.568209e-49 | -8.615850e-47 |
| Msa0203170 | Msa0335040 | 0.862275 | 5.687437e-64 | -8.615850e-47 |
| Msa0203170 | Msa0368660 | 0.803306 | 3.713110e-49 | -8.615850e-47 |
| Msa0203170 | Msa0371540 | 0.834064 | 3.720446e-56 | -8.615850e-47 |
| Msa0203170 | Msa0419620 | -0.809075 | 2.263519e-50 | -8.615850e-47 |
| Msa0203170 | Msa0419970 | 0.830720 | 2.505151e-55 | -8.615850e-47 |
| Msa0203170 | Msa0419990 | 0.811680 | 6.202335e-51 | -8.615850e-47 |
| Msa0203170 | Msa0458440 | 0.808520 | 2.974997e-50 | -8.615850e-47 |
| Msa0203170 | Msa0464900 | 0.803734 | 3.027071e-49 | -8.615850e-47 |
| Msa0203170 | Msa0465680 | -0.810032 | 1.409918e-50 | -8.615850e-47 |
| Msa0203170 | Msa0466060 | 0.837447 | 5.169747e-57 | -8.615850e-47 |
| Msa0203170 | Msa0473240 | 0.808187 | 3.502923e-50 | -8.615850e-47 |
| Msa0203170 | Msa0480320 | 0.805294 | 1.430988e-49 | -8.615850e-47 |
| Msa0203170 | Msa0484780 | 0.800403 | 1.465067e-48 | -8.615850e-47 |
| Msa0203170 | Msa0517330 | 0.802170 | 6.370239e-49 | -8.615850e-47 |
| Msa0203170 | Msa0517340 | 0.833113 | 6.424691e-56 | -8.615850e-47 |
| Msa0203170 | Msa0524890 | -0.800075 | 1.708673e-48 | -8.615850e-47 |
| Msa0203170 | Msa0578970 | 0.827701 | 1.352516e-54 | -8.615850e-47 |
| Msa0203170 | Msa0598460 | 0.807278 | 5.466286e-50 | -8.615850e-47 |
| Msa0203170 | Msa0610590 | 0.829047 | 6.404970e-55 | -8.615850e-47 |
| Msa0203170 | Msa0611550 | 0.820458 | 6.788576e-53 | -8.615850e-47 |
| Msa0203170 | Msa0622340 | 0.801091 | 1.060585e-48 | -8.615850e-47 |
| Msa0203170 | Msa0651190 | 0.825748 | 3.958357e-54 | -8.615850e-47 |
| Msa0203170 | Msa0651790 | 0.830356 | 3.075890e-55 | -8.615850e-47 |
| Msa0203170 | Msa0694250 | 0.854908 | 8.999043e-62 | -8.615850e-47 |
| Msa0203170 | Msa0731710 | 0.812615 | 3.878471e-51 | -8.615850e-47 |
| Msa0203170 | Msa0739120 | 0.805023 | 1.630652e-49 | -8.615850e-47 |
| Msa0203170 | Msa0756630 | -0.801067 | 1.072291e-48 | -8.615850e-47 |
| Msa0203170 | Msa0767080 | 0.821667 | 3.574354e-53 | -8.615850e-47 |
| Msa0203170 | Msa0793920 | 0.804971 | 1.671988e-49 | -8.615850e-47 |
| Msa0203170 | Msa0853170 | 0.805537 | 1.272867e-49 | -8.615850e-47 |
| Msa0203170 | Msa0870620 | 0.801106 | 1.052982e-48 | -8.615850e-47 |
| Msa0203170 | Msa0882510 | 0.828762 | 7.506513e-55 | -8.615850e-47 |
| Msa0203170 | Msa0893810 | 0.805690 | 1.181931e-49 | -8.615850e-47 |
| Msa0203170 | Msa0896210 | 0.804386 | 2.214964e-49 | -8.615850e-47 |
| Msa0203170 | Msa0896220 | 0.803053 | 4.189014e-49 | -8.615850e-47 |
| Msa0203170 | Msa0908170 | 0.841968 | 3.443798e-58 | -8.615850e-47 |
| Msa0203170 | Msa0910980 | -0.804621 | 1.978575e-49 | -8.615850e-47 |
| Msa0203170 | Msa0927670 | 0.811520 | 6.719836e-51 | -8.615850e-47 |
| Msa0203170 | Msa0944770 | 0.824546 | 7.612169e-54 | -8.615850e-47 |
| Msa0203170 | Msa0946320 | 0.805728 | 1.160407e-49 | -8.615850e-47 |
| Msa0203170 | Msa0950620 | 0.804570 | 2.027619e-49 | -8.615850e-47 |
| Msa0203170 | Msa0960160 | 0.812922 | 3.321578e-51 | -8.615850e-47 |
| Msa0203170 | Msa0961420 | -0.811857 | 5.675194e-51 | -8.615850e-47 |
| Msa0203170 | Msa0993530 | 0.814494 | 1.497332e-51 | -8.615850e-47 |
| Msa0203170 | Msa0996080 | 0.808237 | 3.417497e-50 | -8.615850e-47 |
| Msa0203170 | Msa1019020 | 0.811124 | 8.189661e-51 | -8.615850e-47 |
| Msa0203170 | Msa1026760 | 0.801132 | 1.040016e-48 | -8.615850e-47 |
| Msa0203170 | Msa1037700 | -0.802229 | 6.195506e-49 | -8.615850e-47 |
| Msa0203170 | Msa1078710 | 0.812789 | 3.552029e-51 | -8.615850e-47 |
| Msa0203170 | Msa1082500 | 0.804083 | 2.561439e-49 | -8.615850e-47 |
| Msa0203170 | Msa1085300 | 0.801143 | 1.034671e-48 | -8.615850e-47 |
| Msa0203170 | Msa1087470 | 0.818871 | 1.563090e-52 | -8.615850e-47 |
| Msa0203170 | Msa1092090 | 0.803006 | 4.282499e-49 | -8.615850e-47 |
| Msa0203170 | Msa1097840 | 0.823280 | 1.508153e-53 | -8.615850e-47 |
| Msa0203170 | Msa1104000 | 0.816453 | 5.488123e-52 | -8.615850e-47 |
| Msa0203170 | Msa1133710 | 0.813130 | 2.991513e-51 | -8.615850e-47 |
| Msa0203170 | Msa1147570 | 0.802529 | 5.374236e-49 | -8.615850e-47 |
| Msa0203170 | Msa1217810 | 0.809486 | 1.848132e-50 | -8.615850e-47 |
| Msa0203170 | Msa1218650 | 0.806828 | 6.803965e-50 | -8.615850e-47 |
| Msa0203170 | Msa1228210 | 0.805087 | 1.580855e-49 | -8.615850e-47 |
| Msa0203170 | Msa1233500 | 0.810944 | 8.960394e-51 | -8.615850e-47 |
| Msa0203170 | Msa1244830 | 0.819909 | 9.065651e-53 | -8.615850e-47 |
| Msa0203170 | Msa1278840 | 0.818031 | 2.423017e-52 | -8.615850e-47 |
| Msa0203170 | Msa1282920 | 0.809451 | 1.879742e-50 | -8.615850e-47 |
| Msa0203170 | Msa1322190 | 0.818550 | 1.848401e-52 | -8.615850e-47 |
| Msa0203170 | Msa1324550 | 0.802360 | 5.821795e-49 | -8.615850e-47 |
| Msa0203170 | Msa1327760 | 0.803748 | 3.006120e-49 | -8.615850e-47 |
| Msa0203170 | Msa1340650 | 0.802607 | 5.178158e-49 | -8.615850e-47 |
| Msa0203170 | Msa1343820 | 0.812857 | 3.432867e-51 | -8.615850e-47 |
| Msa0203170 | Msa1358870 | -0.821660 | 3.588205e-53 | -8.615850e-47 |
| Msa0203170 | Msa1363890 | 0.816611 | 5.058621e-52 | -8.615850e-47 |
| Msa0203170 | Msa1365040 | -0.801894 | 7.259037e-49 | -8.615850e-47 |
| Msa0203170 | Msa1393040 | 0.800254 | 1.571291e-48 | -8.615850e-47 |
| Msa0203170 | Msa1408790 | 0.830836 | 2.346548e-55 | -8.615850e-47 |
| Msa0203170 | Msa1419110 | 0.816267 | 6.038287e-52 | -8.615850e-47 |
| Msa0203170 | Msa1423450 | 0.832099 | 1.146981e-55 | -8.615850e-47 |
| Msa0203170 | Msa1436040 | 0.822682 | 2.078790e-53 | -8.615850e-47 |
| Msa0203170 | Msa1439230 | 0.815032 | 1.137815e-51 | -8.615850e-47 |
| Msa0203170 | Msa1440600 | 0.847669 | 9.993110e-60 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0203170 | MtrunA17_Chr2g0300851 | 97.727 | 352 | 8 | 0 | 1 | 352 | 1 | 352 | 0.0 | 705 |
| Msa0203170 | MtrunA17_Chr2g0300841 | 88.385 | 353 | 37 | 2 | 4 | 352 | 8 | 360 | 0.0 | 631 |
| Msa0203170 | MtrunA17_Chr2g0300861 | 84.507 | 355 | 52 | 1 | 1 | 352 | 17 | 371 | 0.0 | 612 |
| Msa0203170 | MtrunA17_Chr8g0370791 | 32.184 | 348 | 219 | 11 | 6 | 344 | 22 | 361 | 4.99e-53 | 179 |
| Msa0203170 | MtrunA17_Chr8g0370761 | 31.897 | 348 | 220 | 11 | 6 | 344 | 22 | 361 | 7.57e-49 | 168 |
| Msa0203170 | MtrunA17_Chr8g0370771 | 31.489 | 235 | 154 | 5 | 117 | 350 | 4 | 232 | 1.35e-35 | 129 |
| Msa0203170 | MtrunA17_Chr4g0025341 | 30.970 | 268 | 172 | 6 | 91 | 349 | 128 | 391 | 6.64e-34 | 129 |
| Msa0203170 | MtrunA17_Chr7g0256591 | 30.830 | 253 | 159 | 6 | 107 | 347 | 136 | 384 | 1.11e-31 | 122 |
| Msa0203170 | MtrunA17_Chr2g0329531 | 28.322 | 286 | 187 | 7 | 77 | 348 | 124 | 405 | 2.07e-31 | 122 |
| Msa0203170 | MtrunA17_Chr7g0256601 | 31.076 | 251 | 161 | 6 | 107 | 347 | 167 | 415 | 4.90e-31 | 121 |
| Msa0203170 | MtrunA17_Chr7g0256581 | 27.224 | 371 | 241 | 10 | 5 | 349 | 2 | 369 | 6.33e-30 | 117 |
| Msa0203170 | MtrunA17_Chr7g0256571 | 27.273 | 374 | 240 | 12 | 3 | 349 | 1 | 369 | 9.98e-30 | 117 |
| Msa0203170 | MtrunA17_Chr2g0322241 | 31.349 | 252 | 164 | 8 | 105 | 349 | 146 | 395 | 1.65e-29 | 117 |
| Msa0203170 | MtrunA17_Chr4g0062001 | 30.894 | 246 | 146 | 9 | 105 | 347 | 110 | 334 | 4.74e-26 | 106 |
| Msa0203170 | MtrunA17_Chr7g0256561 | 28.629 | 248 | 137 | 4 | 105 | 349 | 125 | 335 | 1.23e-24 | 102 |
| Msa0203170 | MtrunA17_Chr8g0376581 | 28.862 | 246 | 149 | 8 | 105 | 347 | 108 | 330 | 6.42e-24 | 100 |
| Msa0203170 | MtrunA17_Chr5g0443561 | 27.491 | 291 | 160 | 7 | 70 | 349 | 73 | 323 | 3.69e-21 | 92.8 |
| Msa0203170 | MtrunA17_Chr4g0020271 | 29.208 | 202 | 121 | 8 | 139 | 339 | 1 | 181 | 7.73e-20 | 86.7 |
| Msa0203170 | MtrunA17_Chr4g0062021 | 25.697 | 323 | 185 | 12 | 55 | 347 | 49 | 346 | 1.32e-19 | 88.6 |
| Msa0203170 | MtrunA17_Chr4g0062031 | 32.530 | 166 | 105 | 4 | 105 | 264 | 109 | 273 | 1.89e-19 | 87.8 |
| Msa0203170 | MtrunA17_Chr8g0370801 | 34.906 | 106 | 64 | 1 | 116 | 216 | 2 | 107 | 3.99e-19 | 81.6 |
| Msa0203170 | MtrunA17_Chr2g0307721 | 32.704 | 159 | 100 | 5 | 107 | 260 | 120 | 276 | 3.83e-18 | 85.9 |
| Msa0203170 | MtrunA17_Chr2g0307721 | 33.121 | 157 | 98 | 5 | 109 | 260 | 574 | 728 | 4.92e-15 | 76.6 |
| Msa0203170 | MtrunA17_Chr4g0061871 | 39.286 | 84 | 50 | 1 | 177 | 260 | 31 | 113 | 1.08e-13 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0203170 | AT3G51420.1 | 29.722 | 360 | 226 | 11 | 6 | 349 | 13 | 361 | 7.35e-48 | 166 |
| Msa0203170 | AT3G51430.1 | 29.412 | 357 | 222 | 10 | 15 | 350 | 20 | 367 | 5.34e-47 | 164 |
| Msa0203170 | AT3G51430.2 | 29.558 | 362 | 213 | 10 | 15 | 350 | 20 | 365 | 5.44e-47 | 163 |
| Msa0203170 | AT3G51440.1 | 32.886 | 298 | 184 | 7 | 50 | 339 | 62 | 351 | 1.14e-45 | 160 |
| Msa0203170 | AT3G51450.1 | 28.954 | 373 | 229 | 12 | 4 | 351 | 7 | 368 | 1.19e-41 | 149 |
| Msa0203170 | AT3G57030.1 | 31.349 | 252 | 165 | 4 | 105 | 349 | 124 | 374 | 2.15e-32 | 125 |
| Msa0203170 | AT1G08470.1 | 29.771 | 262 | 155 | 5 | 105 | 349 | 140 | 389 | 3.91e-32 | 124 |
| Msa0203170 | AT5G22020.3 | 27.123 | 365 | 212 | 10 | 25 | 349 | 45 | 395 | 1.60e-31 | 122 |
| Msa0203170 | AT5G22020.1 | 27.123 | 365 | 212 | 10 | 25 | 349 | 45 | 395 | 1.60e-31 | 122 |
| Msa0203170 | AT5G22020.2 | 27.123 | 365 | 212 | 10 | 25 | 349 | 45 | 395 | 1.60e-31 | 122 |
| Msa0203170 | AT3G57020.2 | 29.592 | 294 | 193 | 10 | 58 | 339 | 54 | 345 | 1.28e-30 | 119 |
| Msa0203170 | AT3G59530.3 | 29.707 | 239 | 160 | 5 | 88 | 319 | 141 | 378 | 4.88e-30 | 119 |
| Msa0203170 | AT3G59530.2 | 29.707 | 239 | 160 | 5 | 88 | 319 | 141 | 378 | 4.88e-30 | 119 |
| Msa0203170 | AT3G59530.1 | 29.707 | 239 | 160 | 5 | 88 | 319 | 141 | 378 | 4.88e-30 | 119 |
| Msa0203170 | AT3G57020.1 | 30.677 | 251 | 162 | 8 | 99 | 339 | 111 | 359 | 8.80e-29 | 115 |
| Msa0203170 | AT3G57010.1 | 30.328 | 244 | 159 | 8 | 105 | 339 | 119 | 360 | 2.07e-28 | 114 |
| Msa0203170 | AT2G41300.1 | 29.365 | 252 | 163 | 7 | 99 | 339 | 136 | 383 | 3.80e-26 | 108 |
| Msa0203170 | AT2G41290.1 | 29.699 | 266 | 170 | 8 | 99 | 349 | 113 | 376 | 6.57e-25 | 104 |
| Msa0203170 | AT1G74010.1 | 27.244 | 312 | 175 | 10 | 58 | 345 | 38 | 321 | 4.14e-20 | 90.1 |
| Msa0203170 | AT1G74000.1 | 24.922 | 321 | 172 | 11 | 58 | 345 | 41 | 325 | 1.88e-18 | 85.5 |
| Msa0203170 | AT1G74020.1 | 27.344 | 256 | 142 | 8 | 105 | 350 | 107 | 328 | 3.12e-18 | 84.7 |
Find 87 sgRNAs with CRISPR-Local
Find 258 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAATTGTGTAAACCAAATT+TGG | 0.170078 | 2_1:-26826297 | None:intergenic |
| TCAACTCTTAAGATTGAATA+AGG | 0.195212 | 2_1:+26827719 | Msa0203170:three_prime_UTR |
| GCTTGAGGTTAGTGCCATTT+TGG | 0.229465 | 2_1:-26823218 | None:intergenic |
| GAATGGTTAGGAATGGAAAT+TGG | 0.237351 | 2_1:+26823563 | Msa0203170:CDS |
| CGTTATTGTCCTTGATGATT+TGG | 0.257134 | 2_1:+26826388 | Msa0203170:CDS |
| GTTATCCTTTCACAAGTAAA+TGG | 0.270520 | 2_1:+26823880 | Msa0203170:CDS |
| CACGATATAATCTTCATCTT+TGG | 0.286547 | 2_1:-26826435 | None:intergenic |
| CCTTCCTTTGTGCACCAAAA+TGG | 0.287411 | 2_1:+26823204 | Msa0203170:exon |
| TTATCCACACAAACATCTTC+TGG | 0.304876 | 2_1:-26823496 | None:intergenic |
| TTGCTCCTGATGGCTCATTC+TGG | 0.309987 | 2_1:+26826704 | Msa0203170:CDS |
| TGTCTGAAACATTGGCTAAA+AGG | 0.318273 | 2_1:+26826616 | Msa0203170:CDS |
| TTCAAGAGAAACTGGATCTA+TGG | 0.319662 | 2_1:-26823293 | None:intergenic |
| CCAAATTTGGTTTACACAAT+TGG | 0.329548 | 2_1:+26826297 | Msa0203170:CDS |
| AGTGTACCAAGTACCAAATT+TGG | 0.334316 | 2_1:+26826284 | Msa0203170:CDS |
| TAAGTGTTTGGATACTTTAG+AGG | 0.335394 | 2_1:-26827462 | None:intergenic |
| GGAATGGAAATTGGGAGAAT+TGG | 0.337340 | 2_1:+26823572 | Msa0203170:CDS |
| AACTTCAGCTGTTGAGTTTG+AGG | 0.342454 | 2_1:+26827616 | Msa0203170:CDS |
| ATTCTGGATCGCTTTGATTC+AGG | 0.356295 | 2_1:+26826720 | Msa0203170:CDS |
| AGTGGTATTTCAAGAGAAAC+TGG | 0.369140 | 2_1:-26823301 | None:intergenic |
| GAATAAAGCTACTAAGTGTT+TGG | 0.377036 | 2_1:-26827474 | None:intergenic |
| ATTTAGTTACACTATTAATC+AGG | 0.378943 | 2_1:-26827511 | None:intergenic |
| GATTTAGGTGTCTGAAACAT+TGG | 0.389467 | 2_1:+26826608 | Msa0203170:intron |
| CATCTCTTGTAGCTGTATAT+AGG | 0.396008 | 2_1:-26823528 | None:intergenic |
| GTCTTAATACTGACTTTGTT+GGG | 0.397231 | 2_1:+26827657 | Msa0203170:CDS |
| ATAGATAGCTCTTCTTTGCT+TGG | 0.400675 | 2_1:+26823601 | Msa0203170:CDS |
| GGAGCAAGATTAATGTTATC+AGG | 0.407899 | 2_1:-26826688 | None:intergenic |
| CAACTCTTAAGATTGAATAA+GGG | 0.412307 | 2_1:+26827720 | Msa0203170:three_prime_UTR |
| TGTAAACCAAATTTGGTACT+TGG | 0.414925 | 2_1:-26826290 | None:intergenic |
| TTAATCAGGTTAACTAGCCT+TGG | 0.417769 | 2_1:-26827497 | None:intergenic |
| TAATAGAGTGTGATTAAACT+TGG | 0.423287 | 2_1:+26823454 | Msa0203170:intron |
| TTACTAAAGGTTACGGAAGA+TGG | 0.426711 | 2_1:+26823850 | Msa0203170:CDS |
| AGTCTTAATACTGACTTTGT+TGG | 0.427545 | 2_1:+26827656 | Msa0203170:CDS |
| AATGGTTAGGAATGGAAATT+GGG | 0.437047 | 2_1:+26823564 | Msa0203170:CDS |
| AGATGGTTGGATTAAAAGAA+TGG | 0.447747 | 2_1:+26823546 | Msa0203170:CDS |
| GTTGGATTAAAAGAATGGTT+AGG | 0.454450 | 2_1:+26823551 | Msa0203170:CDS |
| GCAGGGTTTACTAAAGGTTA+CGG | 0.469389 | 2_1:+26823843 | Msa0203170:intron |
| TAATCAGGTTAACTAGCCTT+GGG | 0.471304 | 2_1:-26827496 | None:intergenic |
| TTTATTGAAAACCTTCCAGC+TGG | 0.472305 | 2_1:+26826664 | Msa0203170:CDS |
| TATTATGCAGGGTTTACTAA+AGG | 0.479194 | 2_1:+26823837 | Msa0203170:intron |
| ATATCGTGGTTTGTGAAACT+TGG | 0.481259 | 2_1:+26826450 | Msa0203170:CDS |
| AACATTAATCTTGCTCCTGA+TGG | 0.489893 | 2_1:+26826694 | Msa0203170:CDS |
| CATTGTTTGTGATACTACCT+TGG | 0.491818 | 2_1:+26823651 | Msa0203170:CDS |
| GAGAACCATTTACTTGTGAA+AGG | 0.496653 | 2_1:-26823885 | None:intergenic |
| GCGATCCAGAATGAGCCATC+AGG | 0.499792 | 2_1:-26826709 | None:intergenic |
| ATTAAAAGAATGGTTAGGAA+TGG | 0.506704 | 2_1:+26823556 | Msa0203170:CDS |
| TGGTTCTATGCACTTTGCAA+TGG | 0.511214 | 2_1:-26827686 | None:intergenic |
| GATGATTTGGCCTTTGCCAA+TGG | 0.513304 | 2_1:+26826401 | Msa0203170:CDS |
| AACTCTTAAGATTGAATAAG+GGG | 0.521254 | 2_1:+26827721 | Msa0203170:three_prime_UTR |
| AAAAGTTTGGTGATAATGAT+GGG | 0.521526 | 2_1:+26827576 | Msa0203170:CDS |
| AGTCAGTATTAAGACTTCCT+AGG | 0.523122 | 2_1:-26827649 | None:intergenic |
| TCAAGAGAAACTGGATCTAT+GGG | 0.525446 | 2_1:-26823292 | None:intergenic |
| TTTGGACAGTGCAACACCAT+TGG | 0.529499 | 2_1:-26826417 | None:intergenic |
| CAAATCATCAAGGACAATAA+CGG | 0.530113 | 2_1:-26826387 | None:intergenic |
| TAAGAGTTGAACTACTTCAC+TGG | 0.531085 | 2_1:-26827706 | None:intergenic |
| TTATTATTCATATCAGTGAC+AGG | 0.532705 | 2_1:-26827838 | None:intergenic |
| GCAGGTGACTTCTGAAAGGA+TGG | 0.538860 | 2_1:+26827427 | Msa0203170:intron |
| AGGTGACTTCTGAAAGGATG+GGG | 0.551032 | 2_1:+26827429 | Msa0203170:intron |
| GGAATCACTACTTCTAAAGA+TGG | 0.552396 | 2_1:+26823622 | Msa0203170:CDS |
| ACTTAGTAGCTTTATTCCCA+AGG | 0.553760 | 2_1:+26827480 | Msa0203170:CDS |
| TTGGTCGATGATACAGAAAG+TGG | 0.567499 | 2_1:-26823319 | None:intergenic |
| TGTTATCAGGTCCAGCTGGA+AGG | 0.568452 | 2_1:-26826675 | None:intergenic |
| ATACAGCTACAAGAGATGGT+TGG | 0.570015 | 2_1:+26823533 | Msa0203170:CDS |
| AGTGTGATTAAACTTGGAGA+AGG | 0.571921 | 2_1:+26823460 | Msa0203170:CDS |
| TTAATGTTATCAGGTCCAGC+TGG | 0.572564 | 2_1:-26826679 | None:intergenic |
| CAGGTGACTTCTGAAAGGAT+GGG | 0.582391 | 2_1:+26827428 | Msa0203170:intron |
| TAGTGTAACTAAATCTGCAA+TGG | 0.584002 | 2_1:+26827520 | Msa0203170:CDS |
| CTATATACAGCTACAAGAGA+TGG | 0.586350 | 2_1:+26823529 | Msa0203170:CDS |
| GTGCTTGAGGCAAGACCACA+TGG | 0.588367 | 2_1:+26826329 | Msa0203170:CDS |
| AATGGCACTAACCTCAAGCT+TGG | 0.590599 | 2_1:+26823222 | Msa0203170:exon |
| TGGCAAAGGCCAAATCATCA+AGG | 0.590889 | 2_1:-26826397 | None:intergenic |
| GATATAATAGAAGCATCAGA+TGG | 0.591142 | 2_1:+26826248 | Msa0203170:CDS |
| TTTGAGGACAATCTTTACCT+AGG | 0.592675 | 2_1:+26827632 | Msa0203170:CDS |
| ATAACGGTTTCATTTGACAT+GGG | 0.603716 | 2_1:-26826371 | None:intergenic |
| AATAACGGTTTCATTTGACA+TGG | 0.605627 | 2_1:-26826372 | None:intergenic |
| GATGTTTGTGTGGATAAAGA+TGG | 0.610609 | 2_1:+26823502 | Msa0203170:CDS |
| CAGTGCAACACCATTGGCAA+AGG | 0.613191 | 2_1:-26826411 | None:intergenic |
| TACCTTAAAAGTTGTCCATG+TGG | 0.628210 | 2_1:-26826344 | None:intergenic |
| TACATGCGATATTAGTTGCG+AGG | 0.630721 | 2_1:+26827861 | Msa0203170:three_prime_UTR |
| TGGCTAAAAGGTATTAACAA+AGG | 0.633072 | 2_1:+26826628 | Msa0203170:CDS |
| ATCACTACTTCTAAAGATGG+TGG | 0.639513 | 2_1:+26823625 | Msa0203170:CDS |
| CAAAGATGAAGATTATATCG+TGG | 0.647875 | 2_1:+26826436 | Msa0203170:CDS |
| TGTAACTAAATCTGCAATGG+TGG | 0.654164 | 2_1:+26827523 | Msa0203170:CDS |
| AGCTGCTAGAACCAAGCTTG+AGG | 0.656502 | 2_1:-26823233 | None:intergenic |
| GTGGTGAAAGTGACATCTGA+AGG | 0.672903 | 2_1:+26827542 | Msa0203170:CDS |
| TTGGTATCTAGATGTGCTTG+AGG | 0.682578 | 2_1:+26826316 | Msa0203170:CDS |
| GCAACCAGAAGATGTTTGTG+TGG | 0.684744 | 2_1:+26823492 | Msa0203170:CDS |
| TGTTGCAGGTGACTTCTGAA+AGG | 0.687287 | 2_1:+26827423 | Msa0203170:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAATTGATTTTTTTTTTGA+AGG | - | chr2_1:26823082-26823101 | None:intergenic | 10.0% |
| !! | ATATATATATATATTAGTAG+AGG | + | chr2_1:26823145-26823164 | Msa0203170:five_prime_UTR | 10.0% |
| !! | TCATAATAAATTATTTGTTT+GGG | - | chr2_1:26823924-26823943 | None:intergenic | 10.0% |
| !! | TTAAAACAAAGTTAAAATAA+AGG | + | chr2_1:26824476-26824495 | Msa0203170:intron | 10.0% |
| !!! | TTTTTAAGTTAAAATTTGTT+TGG | + | chr2_1:26824558-26824577 | Msa0203170:intron | 10.0% |
| !!! | ATGTTTAAAATATTTTTTGA+AGG | + | chr2_1:26824636-26824655 | Msa0203170:intron | 10.0% |
| !!! | TGTTTAAAATATTTTTTGAA+GGG | + | chr2_1:26824637-26824656 | Msa0203170:intron | 10.0% |
| !!! | AACTTGTTAAATATTTAAAT+AGG | + | chr2_1:26824764-26824783 | Msa0203170:intron | 10.0% |
| !!! | TGTAAATATTTATTTTTGAA+GGG | - | chr2_1:26825130-26825149 | None:intergenic | 10.0% |
| !!! | ATGTAAATATTTATTTTTGA+AGG | - | chr2_1:26825131-26825150 | None:intergenic | 10.0% |
| !! | TTCAAAAATAAATATTTACA+TGG | + | chr2_1:26825130-26825149 | Msa0203170:intron | 10.0% |
| !! | TGAAAAATATATGAAAATAA+TGG | + | chr2_1:26825153-26825172 | Msa0203170:intron | 10.0% |
| !! | GAAAAATATATGAAAATAAT+GGG | + | chr2_1:26825154-26825173 | Msa0203170:intron | 10.0% |
| !! | ATAAATTGATAAAAAAGAAA+AGG | - | chr2_1:26825488-26825507 | None:intergenic | 10.0% |
| !!! | CGTTTTTTTATAATTTTTTT+TGG | + | chr2_1:26825592-26825611 | Msa0203170:intron | 10.0% |
| !!! | ATTATAAATTTCTTTAGTTT+AGG | + | chr2_1:26825686-26825705 | Msa0203170:intron | 10.0% |
| !! | AAATATATTTAGTAAATTTG+TGG | + | chr2_1:26825875-26825894 | Msa0203170:intron | 10.0% |
| !!! | TCATTATAAGATATTTTTTA+AGG | + | chr2_1:26826042-26826061 | Msa0203170:intron | 10.0% |
| !!! | ATTATTTTTTTAATATGGTA+AGG | + | chr2_1:26826180-26826199 | Msa0203170:intron | 10.0% |
| !!! | TTATTTTTTTAATATGGTAA+GGG | + | chr2_1:26826181-26826200 | Msa0203170:intron | 10.0% |
| !! | GATACTAAAAAAAATATTAA+GGG | - | chr2_1:26826773-26826792 | None:intergenic | 10.0% |
| !! | AGATACTAAAAAAAATATTA+AGG | - | chr2_1:26826774-26826793 | None:intergenic | 10.0% |
| !!! | ATTTATATTGAAATTTTGAT+TGG | + | chr2_1:26827342-26827361 | Msa0203170:intron | 10.0% |
| !!! | TATAACCAAAATTATTTTTG+CGG | - | chr2_1:26823123-26823142 | None:intergenic | 15.0% |
| !! | CTCATAATAAATTATTTGTT+TGG | - | chr2_1:26823925-26823944 | None:intergenic | 15.0% |
| !! | TGAGTAAATATAATATTTCT+AGG | - | chr2_1:26824693-26824712 | None:intergenic | 15.0% |
| !! | TAAATAGGAGAAATAATTTA+AGG | + | chr2_1:26824779-26824798 | Msa0203170:intron | 15.0% |
| !! | TTTACATTCAAATATTTACA+TGG | + | chr2_1:26825103-26825122 | Msa0203170:intron | 15.0% |
| !!! | ATAAATGATTATCTATCTTT+TGG | + | chr2_1:26825568-26825587 | Msa0203170:intron | 15.0% |
| !! | AAACACTTACATATATAAAA+TGG | - | chr2_1:26826069-26826088 | None:intergenic | 15.0% |
| !! | TTAAAAAAATAATCCAAGAA+GGG | - | chr2_1:26826173-26826192 | None:intergenic | 15.0% |
| !! | ATTAAAAAAATAATCCAAGA+AGG | - | chr2_1:26826174-26826193 | None:intergenic | 15.0% |
| !!! | CTTGGATTATTTTTTTAATA+TGG | + | chr2_1:26826175-26826194 | Msa0203170:intron | 15.0% |
| !!! | TAATCATTTAGGATTTATCT+TGG | - | chr2_1:26823735-26823754 | None:intergenic | 20.0% |
| !!! | TATGTGTTGTTTAATCATTT+AGG | - | chr2_1:26823746-26823765 | None:intergenic | 20.0% |
| !! | AACACATAATTATATTATGC+AGG | + | chr2_1:26823825-26823844 | Msa0203170:intron | 20.0% |
| !! | ACACATAATTATATTATGCA+GGG | + | chr2_1:26823826-26823845 | Msa0203170:intron | 20.0% |
| !! | TGTATTACTTAATTTAAGCA+TGG | - | chr2_1:26823978-26823997 | None:intergenic | 20.0% |
| !!! | TTTTTAACACATCACATTTT+AGG | + | chr2_1:26824003-26824022 | Msa0203170:intron | 20.0% |
| !! | TATACCCTATTCTTAAAATT+TGG | - | chr2_1:26824030-26824049 | None:intergenic | 20.0% |
| !!! | AAGCTTTGATAGAATATATT+GGG | - | chr2_1:26824103-26824122 | None:intergenic | 20.0% |
| !!! | AAAGCTTTGATAGAATATAT+TGG | - | chr2_1:26824104-26824123 | None:intergenic | 20.0% |
| !!! | AAACTATGATTGTTTTGATA+AGG | - | chr2_1:26824186-26824205 | None:intergenic | 20.0% |
| !!! | GTGTATTATTATGTTTTACT+TGG | - | chr2_1:26824930-26824949 | None:intergenic | 20.0% |
| !! | TACAATACATAATATATGCA+AGG | + | chr2_1:26825039-26825058 | Msa0203170:intron | 20.0% |
| !! | AAAGGAGAAATAACAAAAAA+AGG | - | chr2_1:26825470-26825489 | None:intergenic | 20.0% |
| !!! | TTTTTTTTGGTTGAGATTAA+CGG | + | chr2_1:26825605-26825624 | Msa0203170:intron | 20.0% |
| !!! | TACCACGATATTATATTTTT+TGG | - | chr2_1:26825821-26825840 | None:intergenic | 20.0% |
| !!! | ATATATTTAGCTTTCACATT+TGG | - | chr2_1:26825863-26825882 | None:intergenic | 20.0% |
| !!! | TTGTGGATTTTGTTATAAAA+TGG | + | chr2_1:26825892-26825911 | Msa0203170:intron | 20.0% |
| !!! | TGTGGATTTTGTTATAAAAT+GGG | + | chr2_1:26825893-26825912 | Msa0203170:intron | 20.0% |
| !! | AAAAAAGAATGCATATAACA+TGG | - | chr2_1:26825984-26826003 | None:intergenic | 20.0% |
| !! | TAATTTCATCAATAACTTCA+AGG | + | chr2_1:26827081-26827100 | Msa0203170:intron | 20.0% |
| !! | ATTTAGTTACACTATTAATC+AGG | - | chr2_1:26827514-26827533 | None:intergenic | 20.0% |
| !! | TAAGACCGCAAAAATAATTT+TGG | + | chr2_1:26823115-26823134 | Msa0203170:five_prime_UTR | 25.0% |
| ! | TAATAGAGTGTGATTAAACT+TGG | + | chr2_1:26823454-26823473 | Msa0203170:intron | 25.0% |
| ! | ATTAAAAGAATGGTTAGGAA+TGG | + | chr2_1:26823556-26823575 | Msa0203170:CDS | 25.0% |
| !!! | TAGGTCCAAATTTTAAGAAT+AGG | + | chr2_1:26824022-26824041 | Msa0203170:intron | 25.0% |
| !!! | AGGTCCAAATTTTAAGAATA+GGG | + | chr2_1:26824023-26824042 | Msa0203170:intron | 25.0% |
| ! | CTGTCAAAAAAGAAGAATAT+TGG | - | chr2_1:26824076-26824095 | None:intergenic | 25.0% |
| ! | TTACTGTAACTTCAACAATA+TGG | + | chr2_1:26824124-26824143 | Msa0203170:intron | 25.0% |
| !! | AACAATCATAGTTTTCAATC+AGG | + | chr2_1:26824192-26824211 | Msa0203170:intron | 25.0% |
| !! | ACAATCATAGTTTTCAATCA+GGG | + | chr2_1:26824193-26824212 | Msa0203170:intron | 25.0% |
| ! | CGATCTTTAGTTATAAATTG+TGG | - | chr2_1:26824226-26824245 | None:intergenic | 25.0% |
| ! | GTAATTACATTCAATCATGT+AGG | - | chr2_1:26824249-26824268 | None:intergenic | 25.0% |
| ! | CATGATTGAATGTAATTACA+TGG | + | chr2_1:26824250-26824269 | Msa0203170:intron | 25.0% |
| !! | AATTACATGGTGGAATAATT+TGG | + | chr2_1:26824263-26824282 | Msa0203170:intron | 25.0% |
| ! | GACAATATATTGTTATATGC+AGG | + | chr2_1:26824349-26824368 | Msa0203170:intron | 25.0% |
| ! | CTTCATTTATTCACCTTAAA+AGG | + | chr2_1:26824394-26824413 | Msa0203170:intron | 25.0% |
| ! | AGAATGAAGTTAAAGTTGTT+TGG | + | chr2_1:26824505-26824524 | Msa0203170:intron | 25.0% |
| !!! | TTTTTTTTTTTTTTGGTGCC+TGG | - | chr2_1:26825080-26825099 | None:intergenic | 25.0% |
| ! | TATTGAATGACCGTAAAATA+GGG | + | chr2_1:26825203-26825222 | Msa0203170:intron | 25.0% |
| ! | ATTAACGGTATACTAACAAA+AGG | + | chr2_1:26825620-26825639 | Msa0203170:intron | 25.0% |
| ! | TTATATTGGGATGTTTAAGT+AGG | - | chr2_1:26825714-26825733 | None:intergenic | 25.0% |
| ! | GACAATGCATAAAATATGTA+AGG | + | chr2_1:26825770-26825789 | Msa0203170:intron | 25.0% |
| !!! | CACGATATTATATTTTTTGG+TGG | - | chr2_1:26825818-26825837 | None:intergenic | 25.0% |
| ! | CACCAAAAAATATAATATCG+TGG | + | chr2_1:26825816-26825835 | Msa0203170:intron | 25.0% |
| !!! | GTGGATTTTGTTATAAAATG+GGG | + | chr2_1:26825894-26825913 | Msa0203170:intron | 25.0% |
| !!! | TGCATTCTTTTTTTTTGAAG+AGG | + | chr2_1:26825991-26826010 | Msa0203170:intron | 25.0% |
| ! | GAAATAGAATGCATATAACA+TGG | - | chr2_1:26826024-26826043 | None:intergenic | 25.0% |
| ! | TAATAATAAATCTCCCTTCT+TGG | + | chr2_1:26826157-26826176 | Msa0203170:intron | 25.0% |
| ! | TATTATATCATCTGCAAATC+TGG | - | chr2_1:26826237-26826256 | None:intergenic | 25.0% |
| !! | GTTTTTCATGAATCAGATTT+AGG | + | chr2_1:26826593-26826612 | Msa0203170:intron | 25.0% |
| ! | AAAATATTAAGGGAGTTCAA+GGG | - | chr2_1:26826763-26826782 | None:intergenic | 25.0% |
| ! | AAAAATATTAAGGGAGTTCA+AGG | - | chr2_1:26826764-26826783 | None:intergenic | 25.0% |
| !! | TAGTAGTGTTAAATCTTTTG+AGG | + | chr2_1:26826960-26826979 | Msa0203170:intron | 25.0% |
| !! | AGTAGTGTTAAATCTTTTGA+GGG | + | chr2_1:26826961-26826980 | Msa0203170:intron | 25.0% |
| ! | GTAAATTAGAGACGATTAAA+AGG | + | chr2_1:26827110-26827129 | Msa0203170:intron | 25.0% |
| !!! | TTTCAATCTGAAGTTTTGAT+TGG | + | chr2_1:26827306-26827325 | Msa0203170:intron | 25.0% |
| ! | ATTGGTTATGTTATGCAATA+AGG | + | chr2_1:26827360-26827379 | Msa0203170:intron | 25.0% |
| ! | TATATGTTAATTGATGTTGC+AGG | + | chr2_1:26827409-26827428 | Msa0203170:intron | 25.0% |
| ! | GGCAATATTATCAAAAAGTT+TGG | + | chr2_1:26827563-26827582 | Msa0203170:CDS | 25.0% |
| !! | AAAAAGTTTGGTGATAATGA+TGG | + | chr2_1:26827575-26827594 | Msa0203170:CDS | 25.0% |
| !! | AAAAGTTTGGTGATAATGAT+GGG | + | chr2_1:26827576-26827595 | Msa0203170:CDS | 25.0% |
| ! | TCAACTCTTAAGATTGAATA+AGG | + | chr2_1:26827719-26827738 | Msa0203170:three_prime_UTR | 25.0% |
| ! | CAACTCTTAAGATTGAATAA+GGG | + | chr2_1:26827720-26827739 | Msa0203170:three_prime_UTR | 25.0% |
| ! | AACTCTTAAGATTGAATAAG+GGG | + | chr2_1:26827721-26827740 | Msa0203170:three_prime_UTR | 25.0% |
| !! | AATACATTCCTAGATGTTTT+TGG | - | chr2_1:26827803-26827822 | None:intergenic | 25.0% |
| ! | TTATTATTCATATCAGTGAC+AGG | - | chr2_1:26827841-26827860 | None:intergenic | 25.0% |
| ! | CTTAAGTTTTCACCTGTAAT+TGG | - | chr2_1:26823351-26823370 | None:intergenic | 30.0% |
| CAATTACAGGTGAAAACTTA+AGG | + | chr2_1:26823349-26823368 | Msa0203170:intron | 30.0% | |
| AGATGGTTGGATTAAAAGAA+TGG | + | chr2_1:26823546-26823565 | Msa0203170:CDS | 30.0% | |
| GTTGGATTAAAAGAATGGTT+AGG | + | chr2_1:26823551-26823570 | Msa0203170:CDS | 30.0% | |
| AATGGTTAGGAATGGAAATT+GGG | + | chr2_1:26823564-26823583 | Msa0203170:CDS | 30.0% | |
| CAAGCATGAATTATTTACCA+AGG | - | chr2_1:26823671-26823690 | None:intergenic | 30.0% | |
| CTTGGTAAATAATTCATGCT+TGG | + | chr2_1:26823669-26823688 | Msa0203170:intron | 30.0% | |
| TATTATGCAGGGTTTACTAA+AGG | + | chr2_1:26823837-26823856 | Msa0203170:intron | 30.0% | |
| GTTATCCTTTCACAAGTAAA+TGG | + | chr2_1:26823880-26823899 | Msa0203170:CDS | 30.0% | |
| ATGGATGAACTGAACAAAAT+AGG | - | chr2_1:26823959-26823978 | None:intergenic | 30.0% | |
| TTGGACAGAACATATTATTG+AGG | - | chr2_1:26824057-26824076 | None:intergenic | 30.0% | |
| CTTTGATAGAATATATTGGG+TGG | - | chr2_1:26824100-26824119 | None:intergenic | 30.0% | |
| GATTGAATGTAATTACATGG+TGG | + | chr2_1:26824253-26824272 | Msa0203170:intron | 30.0% | |
| TAGTTCTTGTAAGCATAGTT+CGG | + | chr2_1:26824316-26824335 | Msa0203170:intron | 30.0% | |
| AAGGTGAATAAATGAAGTGT+CGG | - | chr2_1:26824391-26824410 | None:intergenic | 30.0% | |
| CAAACTCAAACATTTCTACT+TGG | + | chr2_1:26824890-26824909 | Msa0203170:intron | 30.0% | |
| !! | ATTATGCCACTTTGTTATAG+TGG | + | chr2_1:26824951-26824970 | Msa0203170:intron | 30.0% |
| TAGAAACCACTATAACAAAG+TGG | - | chr2_1:26824960-26824979 | None:intergenic | 30.0% | |
| TACATAATATATGCAAGGTC+TGG | + | chr2_1:26825044-26825063 | Msa0203170:intron | 30.0% | |
| ACATAATATATGCAAGGTCT+GGG | + | chr2_1:26825045-26825064 | Msa0203170:intron | 30.0% | |
| CTATTGAATGACCGTAAAAT+AGG | + | chr2_1:26825202-26825221 | Msa0203170:intron | 30.0% | |
| AACATCCCAATATAATATCG+TGG | + | chr2_1:26825719-26825738 | Msa0203170:intron | 30.0% | |
| TGCATAAAATATGTAAGGTC+TGG | + | chr2_1:26825775-26825794 | Msa0203170:intron | 30.0% | |
| GCATAAAATATGTAAGGTCT+GGG | + | chr2_1:26825776-26825795 | Msa0203170:intron | 30.0% | |
| CATAAAATATGTAAGGTCTG+GGG | + | chr2_1:26825777-26825796 | Msa0203170:intron | 30.0% | |
| AATATCGTGGTATTCTGATA+TGG | + | chr2_1:26825829-26825848 | Msa0203170:intron | 30.0% | |
| !! | ATTTAGCTTTCACATTTGGA+TGG | - | chr2_1:26825859-26825878 | None:intergenic | 30.0% |
| ACTGAATTTGAACTTGAACA+CGG | - | chr2_1:26826116-26826135 | None:intergenic | 30.0% | |
| AAGTTCAAATTCAGTGGAAA+TGG | + | chr2_1:26826121-26826140 | Msa0203170:intron | 30.0% | |
| !! | GATATAATAGAAGCATCAGA+TGG | + | chr2_1:26826248-26826267 | Msa0203170:CDS | 30.0% |
| TGTAAACCAAATTTGGTACT+TGG | - | chr2_1:26826293-26826312 | None:intergenic | 30.0% | |
| CCAATTGTGTAAACCAAATT+TGG | - | chr2_1:26826300-26826319 | None:intergenic | 30.0% | |
| ! | CCAAATTTGGTTTACACAAT+TGG | + | chr2_1:26826297-26826316 | Msa0203170:CDS | 30.0% |
| ATAACGGTTTCATTTGACAT+GGG | - | chr2_1:26826374-26826393 | None:intergenic | 30.0% | |
| AATAACGGTTTCATTTGACA+TGG | - | chr2_1:26826375-26826394 | None:intergenic | 30.0% | |
| CAAATCATCAAGGACAATAA+CGG | - | chr2_1:26826390-26826409 | None:intergenic | 30.0% | |
| CACGATATAATCTTCATCTT+TGG | - | chr2_1:26826438-26826457 | None:intergenic | 30.0% | |
| CAAAGATGAAGATTATATCG+TGG | + | chr2_1:26826436-26826455 | Msa0203170:CDS | 30.0% | |
| !! | TGGCTAAAAGGTATTAACAA+AGG | + | chr2_1:26826628-26826647 | Msa0203170:CDS | 30.0% |
| !! | ATTAATACCTTGAGTTGAGT+GGG | - | chr2_1:26827010-26827029 | None:intergenic | 30.0% |
| !! | AATTAATACCTTGAGTTGAG+TGG | - | chr2_1:26827011-26827030 | None:intergenic | 30.0% |
| TAAGTGTTTGGATACTTTAG+AGG | - | chr2_1:26827465-26827484 | None:intergenic | 30.0% | |
| GAATAAAGCTACTAAGTGTT+TGG | - | chr2_1:26827477-26827496 | None:intergenic | 30.0% | |
| TAGTGTAACTAAATCTGCAA+TGG | + | chr2_1:26827520-26827539 | Msa0203170:CDS | 30.0% | |
| !! | AGTCTTAATACTGACTTTGT+TGG | + | chr2_1:26827656-26827675 | Msa0203170:CDS | 30.0% |
| !! | GTCTTAATACTGACTTTGTT+GGG | + | chr2_1:26827657-26827676 | Msa0203170:CDS | 30.0% |
| GATTTAGACCAAAAACATCT+AGG | + | chr2_1:26827792-26827811 | Msa0203170:three_prime_UTR | 30.0% | |
| TCAAGAGAAACTGGATCTAT+GGG | - | chr2_1:26823295-26823314 | None:intergenic | 35.0% | |
| TTCAAGAGAAACTGGATCTA+TGG | - | chr2_1:26823296-26823315 | None:intergenic | 35.0% | |
| AGTGGTATTTCAAGAGAAAC+TGG | - | chr2_1:26823304-26823323 | None:intergenic | 35.0% | |
| GACCAAAAACAACCAATTAC+AGG | + | chr2_1:26823336-26823355 | Msa0203170:CDS | 35.0% | |
| !! | CACCTGTAATTGGTTGTTTT+TGG | - | chr2_1:26823341-26823360 | None:intergenic | 35.0% |
| AGTGTGATTAAACTTGGAGA+AGG | + | chr2_1:26823460-26823479 | Msa0203170:CDS | 35.0% | |
| TTATCCACACAAACATCTTC+TGG | - | chr2_1:26823499-26823518 | None:intergenic | 35.0% | |
| GATGTTTGTGTGGATAAAGA+TGG | + | chr2_1:26823502-26823521 | Msa0203170:CDS | 35.0% | |
| CATCTCTTGTAGCTGTATAT+AGG | - | chr2_1:26823531-26823550 | None:intergenic | 35.0% | |
| CTATATACAGCTACAAGAGA+TGG | + | chr2_1:26823529-26823548 | Msa0203170:CDS | 35.0% | |
| GAATGGTTAGGAATGGAAAT+TGG | + | chr2_1:26823563-26823582 | Msa0203170:CDS | 35.0% | |
| ATAGATAGCTCTTCTTTGCT+TGG | + | chr2_1:26823601-26823620 | Msa0203170:CDS | 35.0% | |
| ! | GGAATCACTACTTCTAAAGA+TGG | + | chr2_1:26823622-26823641 | Msa0203170:CDS | 35.0% |
| ! | ATCACTACTTCTAAAGATGG+TGG | + | chr2_1:26823625-26823644 | Msa0203170:CDS | 35.0% |
| CATTGTTTGTGATACTACCT+TGG | + | chr2_1:26823651-26823670 | Msa0203170:CDS | 35.0% | |
| TTACTAAAGGTTACGGAAGA+TGG | + | chr2_1:26823850-26823869 | Msa0203170:CDS | 35.0% | |
| GAGAACCATTTACTTGTGAA+AGG | - | chr2_1:26823888-26823907 | None:intergenic | 35.0% | |
| AATTGAGCTGAAAGCTTCTT+GGG | - | chr2_1:26824158-26824177 | None:intergenic | 35.0% | |
| ! | TACATGGTGGAATAATTTGG+AGG | + | chr2_1:26824266-26824285 | Msa0203170:intron | 35.0% |
| ! | TGGCTAGAATTCACCTTTTA+AGG | - | chr2_1:26824410-26824429 | None:intergenic | 35.0% |
| AGGTGAATTCTAGCCATATT+AGG | + | chr2_1:26824414-26824433 | Msa0203170:intron | 35.0% | |
| ! | TAGCCATATTAGGTACTGTT+TGG | + | chr2_1:26824424-26824443 | Msa0203170:intron | 35.0% |
| ! | AGCCATATTAGGTACTGTTT+GGG | + | chr2_1:26824425-26824444 | Msa0203170:intron | 35.0% |
| !!! | TGTTTGGGCAGACTTTTTTA+TGG | + | chr2_1:26824440-26824459 | Msa0203170:intron | 35.0% |
| CATAATATATGCAAGGTCTG+GGG | + | chr2_1:26825046-26825065 | Msa0203170:intron | 35.0% | |
| ! | TGCATGTCTTCCCTATTTTA+CGG | - | chr2_1:26825216-26825235 | None:intergenic | 35.0% |
| !! | ACTTGTTGTACAAGTAAACG+TGG | + | chr2_1:26825236-26825255 | Msa0203170:intron | 35.0% |
| ! | CTTGTTGTACAAGTAAACGT+GGG | + | chr2_1:26825237-26825256 | Msa0203170:intron | 35.0% |
| AGGAGAGATTATGCAAAGAA+GGG | - | chr2_1:26825450-26825469 | None:intergenic | 35.0% | |
| AAGGAGAGATTATGCAAAGA+AGG | - | chr2_1:26825451-26825470 | None:intergenic | 35.0% | |
| GAGGACCACGATATTATATT+GGG | - | chr2_1:26825727-26825746 | None:intergenic | 35.0% | |
| ATAACATGGACCTCGAAATA+TGG | - | chr2_1:26825970-26825989 | None:intergenic | 35.0% | |
| ! | GTGTTCAAGTTCAAATTCAG+TGG | + | chr2_1:26826115-26826134 | Msa0203170:intron | 35.0% |
| AGTGTACCAAGTACCAAATT+TGG | + | chr2_1:26826284-26826303 | Msa0203170:CDS | 35.0% | |
| TACCTTAAAAGTTGTCCATG+TGG | - | chr2_1:26826347-26826366 | None:intergenic | 35.0% | |
| ! | CGTTATTGTCCTTGATGATT+TGG | + | chr2_1:26826388-26826407 | Msa0203170:CDS | 35.0% |
| ! | ATATCGTGGTTTGTGAAACT+TGG | + | chr2_1:26826450-26826469 | Msa0203170:CDS | 35.0% |
| ! | GATTTAGGTGTCTGAAACAT+TGG | + | chr2_1:26826608-26826627 | Msa0203170:intron | 35.0% |
| ! | TGTCTGAAACATTGGCTAAA+AGG | + | chr2_1:26826616-26826635 | Msa0203170:CDS | 35.0% |
| TTTATTGAAAACCTTCCAGC+TGG | + | chr2_1:26826664-26826683 | Msa0203170:CDS | 35.0% | |
| GGAGCAAGATTAATGTTATC+AGG | - | chr2_1:26826691-26826710 | None:intergenic | 35.0% | |
| AACATTAATCTTGCTCCTGA+TGG | + | chr2_1:26826694-26826713 | Msa0203170:CDS | 35.0% | |
| ! | ATGAGTGTTGTCAACACTTT+GGG | + | chr2_1:26826933-26826952 | Msa0203170:intron | 35.0% |
| TTTGACGTTCGTATCTGTAT+CGG | - | chr2_1:26827191-26827210 | None:intergenic | 35.0% | |
| GAAAATAACCACATGTGTGT+CGG | + | chr2_1:26827264-26827283 | Msa0203170:intron | 35.0% | |
| !!! | CAATCTGAAGTTTTGATTGG+CGG | + | chr2_1:26827309-26827328 | Msa0203170:intron | 35.0% |
| !! | ACTTAGTAGCTTTATTCCCA+AGG | + | chr2_1:26827480-26827499 | Msa0203170:CDS | 35.0% |
| !! | TAATCAGGTTAACTAGCCTT+GGG | - | chr2_1:26827499-26827518 | None:intergenic | 35.0% |
| ! | TTAATCAGGTTAACTAGCCT+TGG | - | chr2_1:26827500-26827519 | None:intergenic | 35.0% |
| TGTAACTAAATCTGCAATGG+TGG | + | chr2_1:26827523-26827542 | Msa0203170:CDS | 35.0% | |
| TTTGAGGACAATCTTTACCT+AGG | + | chr2_1:26827632-26827651 | Msa0203170:CDS | 35.0% | |
| AGTCAGTATTAAGACTTCCT+AGG | - | chr2_1:26827652-26827671 | None:intergenic | 35.0% | |
| TAAGAGTTGAACTACTTCAC+TGG | - | chr2_1:26827709-26827728 | None:intergenic | 35.0% | |
| TTGGTCGATGATACAGAAAG+TGG | - | chr2_1:26823322-26823341 | None:intergenic | 40.0% | |
| ATACAGCTACAAGAGATGGT+TGG | + | chr2_1:26823533-26823552 | Msa0203170:CDS | 40.0% | |
| GGAATGGAAATTGGGAGAAT+TGG | + | chr2_1:26823572-26823591 | Msa0203170:CDS | 40.0% | |
| GCAGGGTTTACTAAAGGTTA+CGG | + | chr2_1:26823843-26823862 | Msa0203170:intron | 40.0% | |
| CAATTGAGCTGAAAGCTTCT+TGG | - | chr2_1:26824159-26824178 | None:intergenic | 40.0% | |
| ! | AGCATAGTTCGGTTTGAATC+TGG | + | chr2_1:26824327-26824346 | Msa0203170:intron | 40.0% |
| TGCCCAAACAGTACCTAATA+TGG | - | chr2_1:26824430-26824449 | None:intergenic | 40.0% | |
| GTGAGCTTAGCTAAGTTAGT+AGG | + | chr2_1:26825016-26825035 | Msa0203170:intron | 40.0% | |
| CGAGGACCACGATATTATAT+TGG | - | chr2_1:26825728-26825747 | None:intergenic | 40.0% | |
| CACTGTTAGACCATATTTCG+AGG | + | chr2_1:26825957-26825976 | Msa0203170:intron | 40.0% | |
| AGTGGAAATGGTAGTCACTT+TGG | + | chr2_1:26826133-26826152 | Msa0203170:intron | 40.0% | |
| TTGGTATCTAGATGTGCTTG+AGG | + | chr2_1:26826316-26826335 | Msa0203170:CDS | 40.0% | |
| ! | GACCACATGGACAACTTTTA+AGG | + | chr2_1:26826342-26826361 | Msa0203170:CDS | 40.0% |
| TTAATGTTATCAGGTCCAGC+TGG | - | chr2_1:26826682-26826701 | None:intergenic | 40.0% | |
| ATTCTGGATCGCTTTGATTC+AGG | + | chr2_1:26826720-26826739 | Msa0203170:CDS | 40.0% | |
| ! | CATGAGTGTTGTCAACACTT+TGG | + | chr2_1:26826932-26826951 | Msa0203170:intron | 40.0% |
| ACCTCACAGTCATTGTGAAT+CGG | - | chr2_1:26827058-26827077 | None:intergenic | 40.0% | |
| AACTTCAGCTGTTGAGTTTG+AGG | + | chr2_1:26827616-26827635 | Msa0203170:CDS | 40.0% | |
| ! | TGGTTCTATGCACTTTGCAA+TGG | - | chr2_1:26827689-26827708 | None:intergenic | 40.0% |
| TACATGCGATATTAGTTGCG+AGG | + | chr2_1:26827861-26827880 | Msa0203170:three_prime_UTR | 40.0% | |
| !! | CCATTTTGGTGCACAAAGGA+AGG | - | chr2_1:26823207-26823226 | None:intergenic | 45.0% |
| CCTTCCTTTGTGCACCAAAA+TGG | + | chr2_1:26823204-26823223 | Msa0203170:exon | 45.0% | |
| !!! | AGTGCCATTTTGGTGCACAA+AGG | - | chr2_1:26823211-26823230 | None:intergenic | 45.0% |
| !!! | GCTTGAGGTTAGTGCCATTT+TGG | - | chr2_1:26823221-26823240 | None:intergenic | 45.0% |
| AATGGCACTAACCTCAAGCT+TGG | + | chr2_1:26823222-26823241 | Msa0203170:exon | 45.0% | |
| GCAACCAGAAGATGTTTGTG+TGG | + | chr2_1:26823492-26823511 | Msa0203170:CDS | 45.0% | |
| CTAACTTAGCTAAGCTCACG+AGG | - | chr2_1:26825015-26825034 | None:intergenic | 45.0% | |
| TGAGCTTAGCTCAGTTGCTA+TGG | + | chr2_1:26825748-26825767 | Msa0203170:intron | 45.0% | |
| ! | AAGGTCTGGGGTTCAAATCA+CGG | + | chr2_1:26825789-26825808 | Msa0203170:intron | 45.0% |
| TGGCAAAGGCCAAATCATCA+AGG | - | chr2_1:26826400-26826419 | None:intergenic | 45.0% | |
| ! | GATGATTTGGCCTTTGCCAA+TGG | + | chr2_1:26826401-26826420 | Msa0203170:CDS | 45.0% |
| TTTGGACAGTGCAACACCAT+TGG | - | chr2_1:26826420-26826439 | None:intergenic | 45.0% | |
| CCTCACAGTCATTGTGAATC+GGG | - | chr2_1:26827057-26827076 | None:intergenic | 45.0% | |
| ACGAACGTCAAATACGAAGC+TGG | + | chr2_1:26827199-26827218 | Msa0203170:intron | 45.0% | |
| TGTTGCAGGTGACTTCTGAA+AGG | + | chr2_1:26827423-26827442 | Msa0203170:intron | 45.0% | |
| ! | CAGGTGACTTCTGAAAGGAT+GGG | + | chr2_1:26827428-26827447 | Msa0203170:intron | 45.0% |
| ! | AGGTGACTTCTGAAAGGATG+GGG | + | chr2_1:26827429-26827448 | Msa0203170:intron | 45.0% |
| GTGGTGAAAGTGACATCTGA+AGG | + | chr2_1:26827542-26827561 | Msa0203170:CDS | 45.0% | |
| !! | TAAATAATATTAAAATAGTT+TGG | + | chr2_1:26824819-26824838 | Msa0203170:intron | 5.0% |
| !!! | TAAATGTTTTTTTTTTTTTT+TGG | - | chr2_1:26825087-26825106 | None:intergenic | 5.0% |
| !!! | ATAATATTTTTTCTTAAAAA+TGG | + | chr2_1:26825926-26825945 | Msa0203170:intron | 5.0% |
| AGCTGCTAGAACCAAGCTTG+AGG | - | chr2_1:26823236-26823255 | None:intergenic | 50.0% | |
| CAGTGCAACACCATTGGCAA+AGG | - | chr2_1:26826414-26826433 | None:intergenic | 50.0% | |
| TGTTATCAGGTCCAGCTGGA+AGG | - | chr2_1:26826678-26826697 | None:intergenic | 50.0% | |
| TTGCTCCTGATGGCTCATTC+TGG | + | chr2_1:26826704-26826723 | Msa0203170:CDS | 50.0% | |
| ! | GTGAGTACTGCCACATGTTG+TGG | + | chr2_1:26826983-26827002 | Msa0203170:intron | 50.0% |
| TTGAGTGGGACCACAACATG+TGG | - | chr2_1:26826996-26827015 | None:intergenic | 50.0% | |
| TTGTGGTCCCACTCAACTCA+AGG | + | chr2_1:26827000-26827019 | Msa0203170:intron | 50.0% | |
| CCCGATTCACAATGACTGTG+AGG | + | chr2_1:26827054-26827073 | Msa0203170:intron | 50.0% | |
| ! | AACCACATGTGTGTCGGTGT+TGG | + | chr2_1:26827270-26827289 | Msa0203170:intron | 50.0% |
| ! | GCAGGTGACTTCTGAAAGGA+TGG | + | chr2_1:26827427-26827446 | Msa0203170:intron | 50.0% |
| GGTCACGTGGAAGCTAACTC+TGG | + | chr2_1:26825273-26825292 | Msa0203170:intron | 55.0% | |
| GCAACTGAGCTAAGCTCACG+AGG | - | chr2_1:26825746-26825765 | None:intergenic | 55.0% | |
| GTGCTTGAGGCAAGACCACA+TGG | + | chr2_1:26826329-26826348 | Msa0203170:CDS | 55.0% | |
| GCGATCCAGAATGAGCCATC+AGG | - | chr2_1:26826712-26826731 | None:intergenic | 55.0% | |
| GTCCAACACCGACACACATG+TGG | - | chr2_1:26827275-26827294 | None:intergenic | 55.0% | |
| ! | AGGTCTGGGGTTCGAACTCC+AGG | + | chr2_1:26825059-26825078 | Msa0203170:intron | 60.0% |
| AACGTGGGACGAGCACACTC+AGG | + | chr2_1:26825252-26825271 | Msa0203170:intron | 60.0% | |
| ACGAGCACACTCAGGTCACG+TGG | + | chr2_1:26825260-26825279 | Msa0203170:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 26823062 | 26827890 | 26823062 | ID=Msa0203170;Name=Msa0203170 |
| chr2_1 | mRNA | 26823062 | 26827890 | 26823062 | ID=Msa0203170-mRNA-1;Parent=Msa0203170;Name=Msa0203170-mRNA-1;_AED=0.28;_eAED=0.28;_QI=161|1|1|1|1|1|6|187|352 |
| chr2_1 | exon | 26823062 | 26823357 | 26823062 | ID=Msa0203170-mRNA-1:exon:9945;Parent=Msa0203170-mRNA-1 |
| chr2_1 | exon | 26823460 | 26823672 | 26823460 | ID=Msa0203170-mRNA-1:exon:9946;Parent=Msa0203170-mRNA-1 |
| chr2_1 | exon | 26823847 | 26823914 | 26823847 | ID=Msa0203170-mRNA-1:exon:9947;Parent=Msa0203170-mRNA-1 |
| chr2_1 | exon | 26826238 | 26826474 | 26826238 | ID=Msa0203170-mRNA-1:exon:9948;Parent=Msa0203170-mRNA-1 |
| chr2_1 | exon | 26826609 | 26826741 | 26826609 | ID=Msa0203170-mRNA-1:exon:9949;Parent=Msa0203170-mRNA-1 |
| chr2_1 | exon | 26827431 | 26827890 | 26827431 | ID=Msa0203170-mRNA-1:exon:9950;Parent=Msa0203170-mRNA-1 |
| chr2_1 | five_prime_UTR | 26823062 | 26823222 | 26823062 | ID=Msa0203170-mRNA-1:five_prime_utr;Parent=Msa0203170-mRNA-1 |
| chr2_1 | CDS | 26823223 | 26823357 | 26823223 | ID=Msa0203170-mRNA-1:cds;Parent=Msa0203170-mRNA-1 |
| chr2_1 | CDS | 26823460 | 26823672 | 26823460 | ID=Msa0203170-mRNA-1:cds;Parent=Msa0203170-mRNA-1 |
| chr2_1 | CDS | 26823847 | 26823914 | 26823847 | ID=Msa0203170-mRNA-1:cds;Parent=Msa0203170-mRNA-1 |
| chr2_1 | CDS | 26826238 | 26826474 | 26826238 | ID=Msa0203170-mRNA-1:cds;Parent=Msa0203170-mRNA-1 |
| chr2_1 | CDS | 26826609 | 26826741 | 26826609 | ID=Msa0203170-mRNA-1:cds;Parent=Msa0203170-mRNA-1 |
| chr2_1 | CDS | 26827431 | 26827703 | 26827431 | ID=Msa0203170-mRNA-1:cds;Parent=Msa0203170-mRNA-1 |
| chr2_1 | three_prime_UTR | 26827704 | 26827890 | 26827704 | ID=Msa0203170-mRNA-1:three_prime_utr;Parent=Msa0203170-mRNA-1 |
| Gene Sequence |
| Protein sequence |
