AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0835230

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0835230 MtrunA17_Chr5g0401141 99.493 592 3 0 1 592 1 592 0.0 1231
Msa0835230 MtrunA17_Chr8g0351571 56.774 155 67 0 347 501 3 157 3.56e-57 189
Msa0835230 MtrunA17_Chr7g0266721 51.370 146 71 0 347 492 12 157 5.93e-48 165
Msa0835230 MtrunA17_Chr2g0321111 49.007 151 77 0 347 497 464 614 9.47e-43 162
Msa0835230 MtrunA17_Chr2g0288371 46.988 166 86 2 341 504 9 174 2.08e-36 142
Msa0835230 MtrunA17_Chr7g0260441 50.340 147 59 5 358 492 25 169 7.43e-33 134
Msa0835230 MtrunA17_Chr4g0045321 44.737 152 71 4 354 493 18 168 1.20e-32 129
Msa0835230 MtrunA17_Chr8g0374621 40.609 197 82 6 354 516 18 213 1.90e-32 128
Msa0835230 MtrunA17_Chr6g0484281 39.521 167 93 2 347 505 3 169 1.03e-31 130
Msa0835230 MtrunA17_Chr7g0274841 52.206 136 53 4 354 478 18 152 1.37e-31 120
Msa0835230 MtrunA17_Chr1g0213971 47.222 144 71 4 354 493 94 236 6.20e-31 120
Msa0835230 MtrunA17_Chr8g0357591 38.922 167 94 2 347 505 3 169 2.28e-30 125
Msa0835230 MtrunA17_Chr1g0193711 47.586 145 70 5 354 493 99 242 3.78e-30 119
Msa0835230 MtrunA17_Chr7g0270991 45.833 144 73 4 354 493 110 252 1.72e-29 117
Msa0835230 MtrunA17_Chr4g0038431 49.265 136 57 4 354 478 18 152 1.11e-28 112
Msa0835230 MtrunA17_Chr3g0145501 48.529 136 58 4 354 478 26 160 5.66e-28 110
Msa0835230 MtrunA17_Chr3g0104751 47.761 134 58 4 354 476 48 180 8.87e-28 110
Msa0835230 MtrunA17_Chr8g0353571 45.455 143 67 4 354 486 32 173 9.29e-28 110
Msa0835230 MtrunA17_Chr3g0113441 42.604 169 70 6 325 476 52 210 8.42e-27 108
Msa0835230 MtrunA17_Chr4g0037281 41.892 148 74 4 356 492 63 209 4.23e-24 100
Msa0835230 MtrunA17_Chr3g0138061 40.411 146 73 5 359 492 29 172 2.91e-19 92.4
Msa0835230 MtrunA17_Chr1g0199071 34.641 153 92 3 345 496 80 225 9.70e-18 82.8
Msa0835230 MtrunA17_Chr1g0149061 39.850 133 66 5 358 478 25 155 7.74e-17 84.3
Msa0835230 MtrunA17_Chr1g0163031 30.464 151 100 3 345 495 79 224 2.63e-13 69.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0835230 AT5G67530.1 76.421 598 132 5 1 592 1 595 0.0 909
Msa0835230 AT1G01940.1 55.484 155 69 0 347 501 3 157 3.49e-56 187
Msa0835230 AT2G36130.1 50.685 146 72 0 347 492 12 157 2.24e-49 169
Msa0835230 AT3G44600.1 50.331 151 75 0 347 497 478 628 3.63e-42 161
Msa0835230 AT4G33060.1 44.910 167 89 3 341 504 9 175 2.29e-39 151
Msa0835230 AT1G53720.2 40.719 167 91 2 347 505 3 169 6.14e-34 132
Msa0835230 AT5G13120.1 48.951 143 68 4 354 492 107 248 8.28e-34 130
Msa0835230 AT5G13120.2 48.951 143 68 4 354 492 103 244 8.79e-34 129
Msa0835230 AT3G63400.2 49.660 147 60 5 358 492 25 169 7.97e-33 130
Msa0835230 AT1G53720.1 40.719 167 91 2 347 505 3 169 8.99e-33 132
Msa0835230 AT3G56070.1 47.799 159 70 5 354 501 18 174 1.57e-32 123
Msa0835230 AT3G56070.2 47.799 159 70 5 354 501 18 174 1.57e-32 123
Msa0835230 AT3G63400.3 49.660 147 60 5 358 492 25 169 7.03e-32 130
Msa0835230 AT3G63400.4 49.660 147 60 5 358 492 25 169 7.03e-32 130
Msa0835230 AT3G63400.1 49.660 147 60 5 358 492 25 169 7.03e-32 130
Msa0835230 AT2G15790.1 45.033 151 70 4 354 492 18 167 4.27e-31 125
Msa0835230 AT2G16600.1 48.000 150 65 5 354 492 19 166 6.61e-30 116
Msa0835230 AT3G62030.3 46.154 143 72 4 354 492 108 249 1.40e-29 118
Msa0835230 AT3G62030.1 46.154 143 72 4 354 492 109 250 1.44e-29 118
Msa0835230 AT4G34870.1 47.020 151 67 5 354 493 18 166 3.23e-29 114
Msa0835230 AT4G38740.1 46.000 150 68 5 354 492 18 165 3.43e-29 114
Msa0835230 AT3G62030.2 46.154 143 72 4 354 492 162 303 3.89e-29 118
Msa0835230 AT2G21130.1 45.333 150 69 5 354 492 19 166 4.42e-29 114
Msa0835230 AT3G55920.1 49.254 134 56 4 354 476 73 205 1.05e-28 114
Msa0835230 AT2G29960.1 49.254 134 56 4 354 476 46 178 1.97e-27 110
Msa0835230 AT2G29960.3 49.254 134 56 4 354 476 46 178 1.97e-27 110
Msa0835230 AT5G58710.1 42.675 157 66 5 354 487 49 204 5.78e-26 106
Msa0835230 AT2G38730.1 42.000 150 76 4 354 493 46 194 2.11e-25 104
Msa0835230 AT4G34960.1 40.000 150 78 4 354 492 61 209 5.15e-23 98.2
Msa0835230 AT2G16600.2 43.262 141 63 4 354 492 19 144 7.77e-22 92.8
Msa0835230 AT2G29960.2 44.030 134 53 5 354 476 46 168 7.68e-21 91.3
Msa0835230 AT4G34960.2 46.667 105 44 4 354 447 61 164 3.91e-19 85.5
Msa0835230 AT2G47320.1 31.646 158 104 3 339 496 72 225 4.58e-16 78.2
Msa0835230 AT4G32420.1 33.333 147 84 5 358 492 25 169 1.42e-12 71.2
Msa0835230 AT4G32420.5 33.333 147 84 5 358 492 25 169 1.42e-12 71.2
Msa0835230 AT4G32420.3 33.333 147 84 5 358 492 25 169 1.42e-12 71.2
Msa0835230 AT4G32420.6 33.333 147 84 5 358 492 25 169 1.42e-12 71.2
Msa0835230 AT1G53780.2 38.043 92 56 1 415 505 4 95 1.97e-12 70.5
Msa0835230 AT4G32420.4 33.835 133 75 4 358 478 25 156 5.21e-12 69.3

Find 159 sgRNAs with CRISPR-Local

Find 454 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACAAATTGTATTGAAAATT+TGG 0.022268 5_4:-8550866 None:intergenic
TGGGATTGGGTTCCGGTTTC+CGG 0.187538 5_4:-8544620 None:intergenic
TCCCGACATGTTTATGTTAT+AGG 0.188740 5_4:-8548834 None:intergenic
ATCATTTGCATTCTTCTCTT+TGG 0.192528 5_4:-8550521 None:intergenic
CCTTCCAGAGTGGACTAATT+TGG 0.194082 5_4:-8549735 None:intergenic
CTTCCCCATTGCTAGGGTTT+TGG 0.219469 5_4:-8544697 None:intergenic
TGTACATATCCCTTCTTCTT+TGG 0.242086 5_4:-8549413 None:intergenic
AGAGAAATCTTTGATCTATT+CGG 0.268053 5_4:-8544522 None:intergenic
ACTCCATATATTATAAAATA+TGG 0.273786 5_4:+8545469 Msa0835230:CDS
GAGTTAAGTTCATCCTTAAA+AGG 0.274372 5_4:-8549713 None:intergenic
TTCAGTTGCCCATTCTGTTT+TGG 0.282338 5_4:-8544751 None:intergenic
ACGCACGCGCAGCAATAAAA+AGG 0.292893 5_4:-8544822 None:intergenic
TTGTGATCGTGCAGCTAAAA+TGG 0.299588 5_4:-8548966 None:intergenic
GTAGAGGTGGTGAATCAATT+TGG 0.300503 5_4:+8549684 Msa0835230:CDS
TGGCGGAAAATTTAAATATC+TGG 0.302090 5_4:-8551088 None:intergenic
ACAAATTGTATTGAAAATTT+GGG 0.320416 5_4:-8550865 None:intergenic
ACACTACTGGCGCTGCTTCC+CGG 0.320784 5_4:+8549321 Msa0835230:CDS
AAGTTGAAGATAACAATCTA+TGG 0.320908 5_4:-8544640 None:intergenic
TATGGTAAACATCCTGTTAC+TGG 0.327911 5_4:+8545487 Msa0835230:CDS
CAATCTATGGGATTGGGTTC+CGG 0.328802 5_4:-8544627 None:intergenic
GCTTGCTCTTCTTCCTCATC+TGG 0.351194 5_4:-8550493 None:intergenic
TAGAGGTGGTGAATCAATTT+GGG 0.354211 5_4:+8549685 Msa0835230:CDS
TCCTCATCTGGCTCGGTGTA+AGG 0.356961 5_4:-8550481 None:intergenic
AGCCACATGCATAGCTATTC+TGG 0.365801 5_4:-8549116 None:intergenic
ACCTTCTGGTCAAGTGCATT+AGG 0.369714 5_4:-8548611 None:intergenic
AGGAGCTCCATCGGTCGATT+TGG 0.372599 5_4:-8549002 None:intergenic
CGCTGAAAATCGCCGGAAAC+CGG 0.373300 5_4:+8544608 Msa0835230:five_prime_UTR
AACTGACCTGAATTGTTATA+AGG 0.374079 5_4:-8548498 None:intergenic
ATCTTTGATCTATTCGGCTT+CGG 0.379802 5_4:-8544516 None:intergenic
GATGAAGTTCTCGCATGCCC+TGG 0.382051 5_4:-8549489 None:intergenic
GGATGACCTTATAACAATTC+AGG 0.382294 5_4:+8548492 Msa0835230:CDS
TCACCGACGAGGCATTTACT+AGG 0.383522 5_4:+8548470 Msa0835230:CDS
AAGATAACAATCTATGGGAT+TGG 0.396366 5_4:-8544634 None:intergenic
GAGTTCTTGTGAAAAGTTAG+TGG 0.396927 5_4:-8545538 None:intergenic
GTTGCTTCTTCCCCATTGCT+AGG 0.401850 5_4:-8544704 None:intergenic
TTCAAGGGAGCTCCAGTAAC+AGG 0.404366 5_4:-8545499 None:intergenic
ACTTGACCAGAAGGTTCTTC+TGG 0.406350 5_4:+8548619 Msa0835230:CDS
CAAAATCCAGAAGAACCTTC+TGG 0.412431 5_4:-8548625 None:intergenic
AACAGAATGGGCAACTGAAT+GGG 0.413642 5_4:+8544755 Msa0835230:CDS
GATTCAGATGTTCCAGCTCC+AGG 0.414464 5_4:-8550679 None:intergenic
CTCTTCTTCCTCATCTGGCT+CGG 0.430426 5_4:-8550488 None:intergenic
GGAGCTGGAACATCTGAATC+TGG 0.432526 5_4:+8550682 Msa0835230:CDS
CTGCCATCAGGTGTACAAAC+TGG 0.433550 5_4:-8544944 None:intergenic
ATCGACCGATGGAGCTCCTC+AGG 0.442437 5_4:+8549006 Msa0835230:CDS
CAGGAGGAAATCAAGATAAC+AGG 0.443423 5_4:+8550439 Msa0835230:intron
AATGAGATCTTGTTGCTTCA+AGG 0.444400 5_4:-8545515 None:intergenic
GTGAAAACTTTGTTTAGCAC+TGG 0.453174 5_4:-8548260 None:intergenic
GGCTCATGGTATAGTAATCC+TGG 0.456340 5_4:+8550661 Msa0835230:CDS
AGATAACAATCTATGGGATT+GGG 0.458370 5_4:-8544633 None:intergenic
AAACAAATGCTTAAAGAGCT+TGG 0.459982 5_4:+8548863 Msa0835230:CDS
TGAGAAGAATCCAAAGAAGA+AGG 0.463758 5_4:+8549403 Msa0835230:CDS
GACATGTTTATGTTATAGGC+TGG 0.464280 5_4:-8548830 None:intergenic
CTATGCATGTGGCTGGTGAC+AGG 0.466621 5_4:+8549125 Msa0835230:CDS
ACAGGTGTTGGCGGTGGTGT+TGG 0.468240 5_4:+8550709 Msa0835230:CDS
TTGCTTCTTCCCCATTGCTA+GGG 0.471389 5_4:-8544703 None:intergenic
ATGAGATCTTGTTGCTTCAA+GGG 0.472562 5_4:-8545514 None:intergenic
TTGGCAAATACTTGAAAGCT+AGG 0.473260 5_4:+8550728 Msa0835230:CDS
AAACAGAATGGGCAACTGAA+TGG 0.475308 5_4:+8544754 Msa0835230:CDS
TGGAAATGTCTTCTGCTATG+AGG 0.475926 5_4:+8548316 Msa0835230:CDS
TAAACCAAAACCCTAGCAAT+GGG 0.476283 5_4:+8544693 Msa0835230:exon
AACAGTGGCCCACATACTAA+TGG 0.478597 5_4:+8549776 Msa0835230:CDS
GGTCGGTCACTGTCATCAAC+AGG 0.480063 5_4:-8549908 None:intergenic
CCAAATTAGTCCACTCTGGA+AGG 0.483082 5_4:+8549735 Msa0835230:CDS
GTTAAAAGTCGTTACACTAC+TGG 0.485111 5_4:+8549308 Msa0835230:CDS
ACATCGAAGACGCTGCCATC+AGG 0.486187 5_4:-8544956 None:intergenic
GCCTATAACATAAACATGTC+GGG 0.491731 5_4:+8548833 Msa0835230:CDS
TACACTAGCAACAATGGAAA+AGG 0.495791 5_4:+8549883 Msa0835230:CDS
ACATCTGAATCTGGAGGTAC+AGG 0.497797 5_4:+8550691 Msa0835230:CDS
GTTCTTAACCAAAACAGAAT+GGG 0.498235 5_4:+8544743 Msa0835230:CDS
CTCACCATCTTTGCATTCAC+CGG 0.498409 5_4:-8549151 None:intergenic
GAAAGCTAGGAATGCTCCAC+CGG 0.498700 5_4:+8550741 Msa0835230:CDS
ATTGTGGCAGTCAAAACTAC+TGG 0.503952 5_4:+8548296 Msa0835230:CDS
GGAAAGGAAACTGCATTGCA+TGG 0.504017 5_4:+8548896 Msa0835230:CDS
TGTGAACGTGGATATTATAA+CGG 0.504461 5_4:+8549518 Msa0835230:CDS
GCTGCATCTGCCGCAGTACA+TGG 0.504884 5_4:+8549046 Msa0835230:CDS
TTGGTTTATCACTTCTGTGG+TGG 0.508591 5_4:-8544678 None:intergenic
ATGAAGTTCTCGCATGCCCT+GGG 0.508823 5_4:-8549488 None:intergenic
TGTTCTTAACCAAAACAGAA+TGG 0.518902 5_4:+8544742 Msa0835230:CDS
TCGACAGCAGCAGGTTCAGC+CGG 0.519443 5_4:-8550760 None:intergenic
AACTGGGAACCATTAGTATG+TGG 0.522616 5_4:-8549785 None:intergenic
TTTGCATTTCAGGACAAGGT+TGG 0.522665 5_4:+8550640 Msa0835230:intron
GGAAAATTTAAATATCTGGC+AGG 0.523175 5_4:-8551084 None:intergenic
CAACCCTTGCATGTTCATAG+TGG 0.524406 5_4:-8551120 None:intergenic
CGACACTGGTACAGCCGTTG+TGG 0.526101 5_4:+8550780 Msa0835230:CDS
TTCATCACGCTTTGTGAACG+TGG 0.527470 5_4:+8549506 Msa0835230:CDS
TGATGACAGTGACCGACCTC+TGG 0.527741 5_4:+8549913 Msa0835230:CDS
TGGTATAGTAATCCTGGAGC+TGG 0.532781 5_4:+8550667 Msa0835230:CDS
AAAAGGAAGACGTTTGAAAA+CGG 0.536043 5_4:-8544805 None:intergenic
TCCTAATGCACTTGACCAGA+AGG 0.536364 5_4:+8548610 Msa0835230:CDS
ATGATGTAGAAGTAAAAGAC+CGG 0.536884 5_4:-8549340 None:intergenic
GGAGGTACAGGTGTTGGCGG+TGG 0.538393 5_4:+8550703 Msa0835230:CDS
TGCACTGTGATATAGCGCCC+AGG 0.543902 5_4:+8549471 Msa0835230:CDS
AAAGAGCTTGGAACTGAGCA+AGG 0.545096 5_4:+8548875 Msa0835230:CDS
GTTCATAGTGGTTAATTACA+TGG 0.546602 5_4:-8551108 None:intergenic
GATCCTACTGGTACTGGTAG+AGG 0.546770 5_4:+8549668 Msa0835230:CDS
TGATTTGCACCGCCGTGTGG+AGG 0.547099 5_4:-8544562 None:intergenic
AGCCTATAACATAAACATGT+CGG 0.547101 5_4:+8548832 Msa0835230:CDS
CAAATTAGTCCACTCTGGAA+GGG 0.547791 5_4:+8549736 Msa0835230:CDS
GGCACCGGTGAATGCAAAGA+TGG 0.550158 5_4:+8549147 Msa0835230:CDS
GGTGGCGATCCTACTGGTAC+TGG 0.550338 5_4:+8549662 Msa0835230:CDS
GAAAGGAAACTGCATTGCAT+GGG 0.550522 5_4:+8548897 Msa0835230:CDS
AACTCGCCGCTGAAAATCGC+CGG 0.558027 5_4:+8544601 Msa0835230:five_prime_UTR
GAGAAGAATCCAAAGAAGAA+GGG 0.558567 5_4:+8549404 Msa0835230:CDS
AAATTAGTCCACTCTGGAAG+GGG 0.560803 5_4:+8549737 Msa0835230:CDS
GAACCTGCTGCTGTCGACAC+TGG 0.561503 5_4:+8550766 Msa0835230:CDS
ATACAAGGTGGCGATCCTAC+TGG 0.561736 5_4:+8549656 Msa0835230:CDS
GTACCAGTGTCGACAGCAGC+AGG 0.562548 5_4:-8550769 None:intergenic
GACACTGGTACAGCCGTTGT+GGG 0.562924 5_4:+8550781 Msa0835230:CDS
GAATCTGGAGGTACAGGTGT+TGG 0.565131 5_4:+8550697 Msa0835230:CDS
TCTGGAGGTACAGGTGTTGG+CGG 0.566682 5_4:+8550700 Msa0835230:CDS
GTACAAACTGGAAACTCAAA+CGG 0.568509 5_4:-8544932 None:intergenic
AACTCCAAATTAGTCCACTC+TGG 0.569288 5_4:+8549731 Msa0835230:CDS
GTTTGATTTGCACCGCCGTG+TGG 0.569381 5_4:-8544565 None:intergenic
ACAGCAGCAGGTTCAGCCGG+TGG 0.572103 5_4:-8550757 None:intergenic
TTCAGGACAAGGTTGGCTCA+TGG 0.574231 5_4:+8550647 Msa0835230:intron
AGTTGAAGATAACAATCTAT+GGG 0.578635 5_4:-8544639 None:intergenic
TAAAATGGCAGCGAGTGCAG+CGG 0.579946 5_4:-8548951 None:intergenic
GAGTGCCTGAGGAGCTCCAT+CGG 0.581000 5_4:-8549011 None:intergenic
AAGAGAAAAGCAGCTGTCAG+TGG 0.581591 5_4:+8550808 Msa0835230:CDS
TGTGGCTGGTGACAGGGCAC+CGG 0.581705 5_4:+8549132 Msa0835230:CDS
AATTTGAAAATTGACGATGA+AGG 0.585312 5_4:+8548662 Msa0835230:CDS
TTTCCAGTTTGTACACCTGA+TGG 0.588037 5_4:+8544941 Msa0835230:CDS
TGGAAGGGGTGTAGTTAGCA+TGG 0.588160 5_4:+8549751 Msa0835230:CDS
CACCGACGAGGCATTTACTA+GGG 0.589724 5_4:+8548471 Msa0835230:CDS
ATTGACTACACTAGCAACAA+TGG 0.592417 5_4:+8549877 Msa0835230:CDS
TTAACCACTATGAACATGCA+AGG 0.592620 5_4:+8551116 Msa0835230:three_prime_UTR
ATCCCTAGTAAATGCCTCGT+CGG 0.595336 5_4:-8548473 None:intergenic
TCCTTACACCGAGCCAGATG+AGG 0.597914 5_4:+8550480 Msa0835230:CDS
GCTTGGAACTGAGCAAGGAA+AGG 0.602840 5_4:+8548880 Msa0835230:CDS
AGAATAGCTATGCATGTGGC+TGG 0.603645 5_4:+8549118 Msa0835230:CDS
ATAAACCAAAACCCTAGCAA+TGG 0.604679 5_4:+8544692 Msa0835230:exon
TAACCACTATGAACATGCAA+GGG 0.605007 5_4:+8551117 Msa0835230:three_prime_UTR
CACTGAATTTACCCACATTG+TGG 0.607025 5_4:+8548280 Msa0835230:CDS
GCACTGTGATATAGCGCCCA+GGG 0.612039 5_4:+8549472 Msa0835230:CDS
TAGTAAATGCCTCGTCGGTG+AGG 0.617674 5_4:-8548468 None:intergenic
TATGCATGTGGCTGGTGACA+GGG 0.618344 5_4:+8549126 Msa0835230:CDS
ACTGGGAACCATTAGTATGT+GGG 0.619509 5_4:-8549784 None:intergenic
ACAGAATGGGCAACTGAATG+GGG 0.621742 5_4:+8544756 Msa0835230:CDS
GTTGCACTCATGTTCCGTTG+TGG 0.623797 5_4:+8551035 Msa0835230:three_prime_UTR
AAAGGAAACTGCATTGCATG+GGG 0.624761 5_4:+8548898 Msa0835230:CDS
GAAGATTCCAAATCGACCGA+TGG 0.632221 5_4:+8548995 Msa0835230:CDS
AGAGGTGGTGAATCAATTTG+GGG 0.636786 5_4:+8549686 Msa0835230:CDS
TGATGTAGAAGTAAAAGACC+GGG 0.648897 5_4:-8549339 None:intergenic
GTAGTTAGCATGGCAAACAG+TGG 0.660220 5_4:+8549761 Msa0835230:CDS
TCTACAATACTGAGTGCCTG+AGG 0.667099 5_4:-8549022 None:intergenic
CCACCTCTACCAGTACCAGT+AGG 0.670311 5_4:-8549671 None:intergenic
CCTACTGGTACTGGTAGAGG+TGG 0.680494 5_4:+8549671 Msa0835230:CDS
GAATGGGCAACTGAATGGGG+AGG 0.681661 5_4:+8544759 Msa0835230:CDS
ATTTACGACTCACCAGAGGT+CGG 0.685790 5_4:-8549925 None:intergenic
TGCCAGAATAGCTATGCATG+TGG 0.688708 5_4:+8549114 Msa0835230:CDS
GAAGGAGCTCCTCACCGACG+AGG 0.690654 5_4:+8548459 Msa0835230:CDS
GCTGGAACATCTGAATCTGG+AGG 0.694916 5_4:+8550685 Msa0835230:CDS
GTACAACTGCATACAACACA+CGG 0.699245 5_4:+8549431 Msa0835230:CDS
CATAGTGGTTAATTACATGG+CGG 0.706231 5_4:-8551105 None:intergenic
AAGGAAACTGCATTGCATGG+GGG 0.711732 5_4:+8548899 Msa0835230:CDS
TGCACTTCTTCCATGTACTG+CGG 0.716775 5_4:-8549056 None:intergenic
TAACTACACCCCTTCCAGAG+TGG 0.717283 5_4:-8549745 None:intergenic
AAACCAAAACCCTAGCAATG+GGG 0.725097 5_4:+8544694 Msa0835230:exon
AAATAACAAGAAGACCACAA+CGG 0.757584 5_4:-8551049 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATCTTTTCTTATATAAA+TGG - chr5_4:8545043-8545062 None:intergenic 10.0%
!!! TTACCATATTTTATAATATA+TGG - chr5_4:8545475-8545494 None:intergenic 10.0%
!! AATAAATAAATATGACAAAA+CGG + chr5_4:8546404-8546423 Msa0835230:intron 10.0%
!! ACTCCATATATTATAAAATA+TGG + chr5_4:8545469-8545488 Msa0835230:CDS 15.0%
!!! GATTGTATTTTCATATTTAA+GGG - chr5_4:8545840-8545859 None:intergenic 15.0%
!!! TGATTGTATTTTCATATTTA+AGG - chr5_4:8545841-8545860 None:intergenic 15.0%
!!! TTTTTTTTTGAAATATTGGT+AGG + chr5_4:8545906-8545925 Msa0835230:intron 15.0%
!!! TTTTTTTTGAAATATTGGTA+GGG + chr5_4:8545907-8545926 Msa0835230:intron 15.0%
!! AATTTAATCAATCGTAATAA+TGG + chr5_4:8546130-8546149 Msa0835230:intron 15.0%
!!! TGAATCTTATTTATTACAAT+AGG - chr5_4:8546323-8546342 None:intergenic 15.0%
!!! ATATGTGTTTACATTTTTAA+TGG + chr5_4:8547158-8547177 Msa0835230:intron 15.0%
!!! TATGTGTTTACATTTTTAAT+GGG + chr5_4:8547159-8547178 Msa0835230:intron 15.0%
!! CTATTGAAAATAGTTTAATT+TGG - chr5_4:8547941-8547960 None:intergenic 15.0%
!!! TTTTTATATATGTATGTTTG+TGG + chr5_4:8548394-8548413 Msa0835230:intron 15.0%
!!! TTTTATATATGTATGTTTGT+GGG + chr5_4:8548395-8548414 Msa0835230:intron 15.0%
!!! CATTCATACAATTTTTAAAA+AGG - chr5_4:8549243-8549262 None:intergenic 15.0%
!!! CTTTTTAAAAATTGTATGAA+TGG + chr5_4:8549241-8549260 Msa0835230:intron 15.0%
!!! ACTCATTAAATTTTCATTAT+GGG + chr5_4:8550158-8550177 Msa0835230:intron 15.0%
!! ATAAGTAATCTCAAAAATTA+TGG - chr5_4:8550563-8550582 None:intergenic 15.0%
!!! ATTTTTTTCTCACTTTTATA+AGG + chr5_4:8550589-8550608 Msa0835230:intron 15.0%
!! ACAAATTGTATTGAAAATTT+GGG - chr5_4:8550868-8550887 None:intergenic 15.0%
!! TACAAATTGTATTGAAAATT+TGG - chr5_4:8550869-8550888 None:intergenic 15.0%
!!! TGAAAAATTGATTCAATGAA+AGG - chr5_4:8544867-8544886 None:intergenic 20.0%
!!! CTATTGATAATAATAACTTG+TGG + chr5_4:8545421-8545440 Msa0835230:intron 20.0%
!! AAATATGAAAATACAATCAC+AGG + chr5_4:8545842-8545861 Msa0835230:intron 20.0%
!!! TTTTTTTGAAATATTGGTAG+GGG + chr5_4:8545908-8545927 Msa0835230:intron 20.0%
!! TTGATCATAATAGGATATTA+TGG + chr5_4:8547019-8547038 Msa0835230:intron 20.0%
!! TACTTTCTTCCTTATTATTT+GGG - chr5_4:8547299-8547318 None:intergenic 20.0%
!! TACATTGTACTATTATAGTA+TGG + chr5_4:8547477-8547496 Msa0835230:intron 20.0%
!!! AAAACTTTCAATTTTTAGTC+CGG - chr5_4:8547661-8547680 None:intergenic 20.0%
!!! AGTTTTTTCTGTTAGTTATT+TGG - chr5_4:8547855-8547874 None:intergenic 20.0%
!! GTTTAAACTAAAATTTCTCA+TGG + chr5_4:8548085-8548104 Msa0835230:intron 20.0%
!!! CGATTTTTTTATGTTATTTG+AGG + chr5_4:8548114-8548133 Msa0835230:intron 20.0%
!!! TTTTATGTTATTTGAGGATA+AGG + chr5_4:8548120-8548139 Msa0835230:intron 20.0%
!! ATACATAGAATAATGATTAC+TGG - chr5_4:8549267-8549286 None:intergenic 20.0%
!!! TCATAATCATTTTTTGTAAC+TGG - chr5_4:8549371-8549390 None:intergenic 20.0%
!! TTTGTACAATATGAAAAACT+GGG - chr5_4:8549804-8549823 None:intergenic 20.0%
!! ATTTGTACAATATGAAAAAC+TGG - chr5_4:8549805-8549824 None:intergenic 20.0%
!!! CACTCATTAAATTTTCATTA+TGG + chr5_4:8550157-8550176 Msa0835230:intron 20.0%
!! TTACATGCTTATTTATTCTT+TGG + chr5_4:8550412-8550431 Msa0835230:intron 20.0%
!! AAATGCAAACCAAATAATAA+GGG - chr5_4:8550629-8550648 None:intergenic 20.0%
!!! AATTTAAAGATTTTTCTGGA+TGG + chr5_4:8550833-8550852 Msa0835230:CDS 20.0%
! AGAGAAATCTTTGATCTATT+CGG - chr5_4:8544525-8544544 None:intergenic 25.0%
! AGTTGAAGATAACAATCTAT+GGG - chr5_4:8544642-8544661 None:intergenic 25.0%
! AAGTTGAAGATAACAATCTA+TGG - chr5_4:8544643-8544662 None:intergenic 25.0%
! TATACTTTCATAAGCTATCT+TGG + chr5_4:8545096-8545115 Msa0835230:intron 25.0%
! TTGGAGAGTTTATGAAAATA+AGG + chr5_4:8545115-8545134 Msa0835230:intron 25.0%
! TATTTGCTTCATTGTATGTT+TGG + chr5_4:8545280-8545299 Msa0835230:intron 25.0%
! TTATCAATAGAGTGCATATT+TGG - chr5_4:8545411-8545430 None:intergenic 25.0%
!!! ATCATTTTTGTGCATTCTTT+TGG + chr5_4:8545582-8545601 Msa0835230:intron 25.0%
!! TACTATAGTCTAAACCATTT+TGG - chr5_4:8545740-8545759 None:intergenic 25.0%
!! TATCTCTCCTATTATGTTTT+GGG + chr5_4:8545761-8545780 Msa0835230:intron 25.0%
!! ACAAACACAACAACTTTTTA+TGG - chr5_4:8545806-8545825 None:intergenic 25.0%
! AATTAGTTAGTTAATTCCCT+TGG + chr5_4:8545938-8545957 Msa0835230:intron 25.0%
!! AGAAATTAAAAGTATGCCAA+GGG - chr5_4:8545957-8545976 None:intergenic 25.0%
! AAAAAAATGTCCATTACGTT+TGG - chr5_4:8546024-8546043 None:intergenic 25.0%
! TGTGTGTTAATTCTTTATCA+AGG + chr5_4:8546057-8546076 Msa0835230:intron 25.0%
!!! TAGTTGTTTTAACATTGATC+AGG + chr5_4:8546099-8546118 Msa0835230:intron 25.0%
! TTAATCAATCGTAATAATGG+TGG + chr5_4:8546133-8546152 Msa0835230:intron 25.0%
!!! GTATTCTGTTTTTTTACTCT+CGG - chr5_4:8546449-8546468 None:intergenic 25.0%
! AGAGTAAAAAAACAGAATAC+AGG + chr5_4:8546449-8546468 Msa0835230:intron 25.0%
! AAAAGAGGTAAATGAAGAAA+AGG + chr5_4:8546490-8546509 Msa0835230:intron 25.0%
! TTAAACTCAATGCTGTAATA+AGG - chr5_4:8546959-8546978 None:intergenic 25.0%
! AACACATATTTGCATGATAA+GGG - chr5_4:8547147-8547166 None:intergenic 25.0%
! AAACACATATTTGCATGATA+AGG - chr5_4:8547148-8547167 None:intergenic 25.0%
! CTACTTTCTTCCTTATTATT+TGG - chr5_4:8547300-8547319 None:intergenic 25.0%
! AATCAAAGTAACTAGAAAAG+TGG - chr5_4:8547326-8547345 None:intergenic 25.0%
!! AGTTACTTTGATTGTAATGA+AGG + chr5_4:8547333-8547352 Msa0835230:intron 25.0%
! TAAAGCTTGAAAAACAGAAA+AGG - chr5_4:8547377-8547396 None:intergenic 25.0%
! ATTGTACTATTATAGTATGG+AGG + chr5_4:8547480-8547499 Msa0835230:intron 25.0%
! TAACCATCAACTAATATAAG+CGG + chr5_4:8547595-8547614 Msa0835230:intron 25.0%
! TTAGTTATTTGGTATAGAGT+CGG - chr5_4:8547844-8547863 None:intergenic 25.0%
!!! TTTTGTTCTTTGAGATTTCA+TGG + chr5_4:8548035-8548054 Msa0835230:intron 25.0%
!!! TTTGTTCTTTGAGATTTCAT+GGG + chr5_4:8548036-8548055 Msa0835230:intron 25.0%
!!! CATATATTCATTTAGTTTGC+TGG + chr5_4:8548184-8548203 Msa0835230:intron 25.0%
! TAAACATCAAGACAAAAAAC+TGG + chr5_4:8548437-8548456 Msa0835230:CDS 25.0%
! AATTTGAAAATTGACGATGA+AGG + chr5_4:8548662-8548681 Msa0835230:CDS 25.0%
!!! TAGGTCAAAAAGAAGTATTT+AGG - chr5_4:8549180-8549199 None:intergenic 25.0%
! TTAATGAAGTTCTCAATTTC+AGG + chr5_4:8549286-8549305 Msa0835230:intron 25.0%
! CATAAAATTCCTGCATAAAA+TGG - chr5_4:8549636-8549655 None:intergenic 25.0%
!! AACTTCAAACATACAGTTTT+TGG + chr5_4:8549839-8549858 Msa0835230:CDS 25.0%
!!! TCTACTTTTTTTTCTAAACC+AGG - chr5_4:8550051-8550070 None:intergenic 25.0%
! AAAGATAACAGTATGTACAA+TGG - chr5_4:8550082-8550101 None:intergenic 25.0%
! TGCAAAATATTGTAATCCTA+AGG - chr5_4:8550213-8550232 None:intergenic 25.0%
! ATCCATTAACAATTATCAAC+TGG + chr5_4:8550363-8550382 Msa0835230:intron 25.0%
! TCCATTAACAATTATCAACT+GGG + chr5_4:8550364-8550383 Msa0835230:intron 25.0%
! TAAATAAGCATGTAATCCAT+TGG - chr5_4:8550407-8550426 None:intergenic 25.0%
! GAAATGCAAACCAAATAATA+AGG - chr5_4:8550630-8550649 None:intergenic 25.0%
!!! TATTATTTGGTTTGCATTTC+AGG + chr5_4:8550630-8550649 Msa0835230:intron 25.0%
!! GGTGAATTTAAAGATTTTTC+TGG + chr5_4:8550829-8550848 Msa0835230:CDS 25.0%
AGATAACAATCTATGGGATT+GGG - chr5_4:8544636-8544655 None:intergenic 30.0%
AAGATAACAATCTATGGGAT+TGG - chr5_4:8544637-8544656 None:intergenic 30.0%
!!! CTGTTTTGGTTAAGAACATT+CGG - chr5_4:8544740-8544759 None:intergenic 30.0%
TGTTCTTAACCAAAACAGAA+TGG + chr5_4:8544742-8544761 Msa0835230:CDS 30.0%
GTTCTTAACCAAAACAGAAT+GGG + chr5_4:8544743-8544762 Msa0835230:CDS 30.0%
AAAAGGAAGACGTTTGAAAA+CGG - chr5_4:8544808-8544827 None:intergenic 30.0%
TTGATTCAATGAAAGGATGA+AGG - chr5_4:8544860-8544879 None:intergenic 30.0%
! TCATTGTATGTTTGGAATCA+CGG + chr5_4:8545288-8545307 Msa0835230:intron 30.0%
!! ATAACTTGTGGTTTTCAACT+TGG + chr5_4:8545433-8545452 Msa0835230:intron 30.0%
!! TAACTTGTGGTTTTCAACTT+GGG + chr5_4:8545434-8545453 Msa0835230:intron 30.0%
! GTATCTCTCCTATTATGTTT+TGG + chr5_4:8545760-8545779 Msa0835230:intron 30.0%
AAGTTGTTGTGTTTGTCAAA+TGG + chr5_4:8545810-8545829 Msa0835230:intron 30.0%
! CAGAAATTAAAAGTATGCCA+AGG - chr5_4:8545958-8545977 None:intergenic 30.0%
!!! CTTGGCATACTTTTAATTTC+TGG + chr5_4:8545956-8545975 Msa0835230:intron 30.0%
GGGTGGCTATAATAAAAATA+TGG + chr5_4:8546238-8546257 Msa0835230:intron 30.0%
GCTGCTAATAAAGATACTTA+TGG - chr5_4:8546346-8546365 None:intergenic 30.0%
TAAATATGACAAAACGGAGA+AGG + chr5_4:8546410-8546429 Msa0835230:intron 30.0%
AAAAAAACAGAATACAGGAC+AGG + chr5_4:8546454-8546473 Msa0835230:intron 30.0%
AAAAAACAGAATACAGGACA+GGG + chr5_4:8546455-8546474 Msa0835230:intron 30.0%
! TCTTCATTTACCTCTTTTCT+GGG - chr5_4:8546488-8546507 None:intergenic 30.0%
! TTCTTCATTTACCTCTTTTC+TGG - chr5_4:8546489-8546508 None:intergenic 30.0%
AAAGGAAATGACTAAGATAC+TGG + chr5_4:8546508-8546527 Msa0835230:intron 30.0%
AAGGAAATGACTAAGATACT+GGG + chr5_4:8546509-8546528 Msa0835230:intron 30.0%
ATTCTATCATCTCATTTGCA+TGG - chr5_4:8546588-8546607 None:intergenic 30.0%
CAAATGAGATGATAGAATGT+GGG + chr5_4:8546590-8546609 Msa0835230:intron 30.0%
!!! AAAGATATGCGGTTTTTTGT+TGG + chr5_4:8546696-8546715 Msa0835230:intron 30.0%
!!! GTTTTTTGTTGGCATTTCAT+AGG + chr5_4:8546707-8546726 Msa0835230:intron 30.0%
ATGAAATTAGACGTTACCTT+TGG + chr5_4:8546852-8546871 Msa0835230:intron 30.0%
TTTGACAAAATACCATGTGA+TGG - chr5_4:8546906-8546925 None:intergenic 30.0%
! ACAGCATTGAGTTTAATACA+TGG + chr5_4:8546963-8546982 Msa0835230:intron 30.0%
AAGAATTTCGTTAGAAAGTG+AGG - chr5_4:8547068-8547087 None:intergenic 30.0%
ACACATATTTGCATGATAAG+GGG - chr5_4:8547146-8547165 None:intergenic 30.0%
!! GGTAACACATTTGTTTTCTT+TGG + chr5_4:8547220-8547239 Msa0835230:intron 30.0%
!!! TTTGTTTTCTTTGGCTTTGA+TGG + chr5_4:8547229-8547248 Msa0835230:intron 30.0%
!! TTTGATGGATTAGAATGTGA+GGG + chr5_4:8547244-8547263 Msa0835230:intron 30.0%
! TACAATGCTGATTAAAGGAT+TGG + chr5_4:8547436-8547455 Msa0835230:intron 30.0%
TAGAACAGTATTAGAATCCT+AGG - chr5_4:8547638-8547657 None:intergenic 30.0%
TTCTCTTTCAGCTTAACTAT+TGG + chr5_4:8547770-8547789 Msa0835230:intron 30.0%
TGAGCAACAGTTACATATAT+TGG - chr5_4:8547913-8547932 None:intergenic 30.0%
AATTAGCAGTGTTAACACTA+AGG - chr5_4:8548358-8548377 None:intergenic 30.0%
!! CTGCTAATTTGATTTGTAGA+TGG + chr5_4:8548369-8548388 Msa0835230:intron 30.0%
TATGTATGTTTGTGGGAAAT+AGG + chr5_4:8548402-8548421 Msa0835230:intron 30.0%
AGAAAATATGGATGAATTGC+AGG - chr5_4:8548698-8548717 None:intergenic 30.0%
AGCCTATAACATAAACATGT+CGG + chr5_4:8548832-8548851 Msa0835230:CDS 30.0%
AAACAAATGCTTAAAGAGCT+TGG + chr5_4:8548863-8548882 Msa0835230:CDS 30.0%
ATGATGTAGAAGTAAAAGAC+CGG - chr5_4:8549343-8549362 None:intergenic 30.0%
TGTGAACGTGGATATTATAA+CGG + chr5_4:8549518-8549537 Msa0835230:CDS 30.0%
!!! TTGCTTTTCATAGAAGCATT+AGG + chr5_4:8549543-8549562 Msa0835230:CDS 30.0%
! TCTTATAGTCCATTTTATGC+AGG + chr5_4:8549624-8549643 Msa0835230:intron 30.0%
! TGCAGGAATTTTATGATACA+AGG + chr5_4:8549641-8549660 Msa0835230:intron 30.0%
! AGGAATTTTATGATACAAGG+TGG + chr5_4:8549644-8549663 Msa0835230:intron 30.0%
GAGTTAAGTTCATCCTTAAA+AGG - chr5_4:8549716-8549735 None:intergenic 30.0%
!! TTCAAACATACAGTTTTTGG+AGG + chr5_4:8549842-8549861 Msa0835230:CDS 30.0%
ATGATCCAAAAATTTAGACC+TGG + chr5_4:8550030-8550049 Msa0835230:intron 30.0%
! CTAAACCAGGTCTAAATTTT+TGG - chr5_4:8550038-8550057 None:intergenic 30.0%
! ACATACTGTTATCTTTTGCA+CGG + chr5_4:8550086-8550105 Msa0835230:intron 30.0%
AATTTAATGAGTGAAACCCA+AGG - chr5_4:8550150-8550169 None:intergenic 30.0%
! ATTTGTGAACATTGAGGTTT+TGG + chr5_4:8550238-8550257 Msa0835230:intron 30.0%
AAATATCAACTCCTCTCTTA+AGG - chr5_4:8550303-8550322 None:intergenic 30.0%
TATTTAACAACAATGCTTGC+TGG + chr5_4:8550318-8550337 Msa0835230:intron 30.0%
ATTTAACAACAATGCTTGCT+GGG + chr5_4:8550319-8550338 Msa0835230:intron 30.0%
!! TTATTTATTCTTTGGCTTGC+AGG + chr5_4:8550420-8550439 Msa0835230:intron 30.0%
ATCATTTGCATTCTTCTCTT+TGG - chr5_4:8550524-8550543 None:intergenic 30.0%
GTGAACTAACCCTTATTATT+TGG + chr5_4:8550617-8550636 Msa0835230:intron 30.0%
! AATAGAATCATTTTGTCTCG+AGG + chr5_4:8551013-8551032 Msa0835230:three_prime_UTR 30.0%
AAATAACAAGAAGACCACAA+CGG - chr5_4:8551052-8551071 None:intergenic 30.0%
GGAAAATTTAAATATCTGGC+AGG - chr5_4:8551087-8551106 None:intergenic 30.0%
TGGCGGAAAATTTAAATATC+TGG - chr5_4:8551091-8551110 None:intergenic 30.0%
GTTCATAGTGGTTAATTACA+TGG - chr5_4:8551111-8551130 None:intergenic 30.0%
ATCTTTGATCTATTCGGCTT+CGG - chr5_4:8544519-8544538 None:intergenic 35.0%
!!! GTTTTGGTTTATCACTTCTG+TGG - chr5_4:8544684-8544703 None:intergenic 35.0%
ATAAACCAAAACCCTAGCAA+TGG + chr5_4:8544692-8544711 Msa0835230:exon 35.0%
TAAACCAAAACCCTAGCAAT+GGG + chr5_4:8544693-8544712 Msa0835230:exon 35.0%
GTACAAACTGGAAACTCAAA+CGG - chr5_4:8544935-8544954 None:intergenic 35.0%
! GACATACAACTTGTTCAGAT+TGG - chr5_4:8545242-8545261 None:intergenic 35.0%
TATGGTAAACATCCTGTTAC+TGG + chr5_4:8545487-8545506 Msa0835230:CDS 35.0%
! ATGAGATCTTGTTGCTTCAA+GGG - chr5_4:8545517-8545536 None:intergenic 35.0%
! AATGAGATCTTGTTGCTTCA+AGG - chr5_4:8545518-8545537 None:intergenic 35.0%
GAGTTCTTGTGAAAAGTTAG+TGG - chr5_4:8545541-8545560 None:intergenic 35.0%
! ACTTTTCACAAGAACTCAGA+AGG + chr5_4:8545544-8545563 Msa0835230:CDS 35.0%
CATGATTGAGTTCATTGCTT+AGG + chr5_4:8545625-8545644 Msa0835230:intron 35.0%
TGTATATGCGTATTGCCTAT+TGG + chr5_4:8545714-8545733 Msa0835230:intron 35.0%
!! TCTAAACCATTTTGGCCAAT+AGG - chr5_4:8545732-8545751 None:intergenic 35.0%
CCATCATCCCAAAACATAAT+AGG - chr5_4:8545771-8545790 None:intergenic 35.0%
!!! CCTATTATGTTTTGGGATGA+TGG + chr5_4:8545768-8545787 Msa0835230:intron 35.0%
!! ATCGTAATAATGGTGGATGA+TGG + chr5_4:8546140-8546159 Msa0835230:intron 35.0%
!! TCGTAATAATGGTGGATGAT+GGG + chr5_4:8546141-8546160 Msa0835230:intron 35.0%
AAGATACTGGGTAGATAATC+AGG + chr5_4:8546521-8546540 Msa0835230:intron 35.0%
AGATACTGGGTAGATAATCA+GGG + chr5_4:8546522-8546541 Msa0835230:intron 35.0%
GCAAATGAGATGATAGAATG+TGG + chr5_4:8546589-8546608 Msa0835230:intron 35.0%
GTAACGTCTAATTTCATAGC+AGG - chr5_4:8546849-8546868 None:intergenic 35.0%
AAAATACCATGTGATGGCTA+TGG - chr5_4:8546900-8546919 None:intergenic 35.0%
AACTCAATGCTGTAATAAGG+TGG - chr5_4:8546956-8546975 None:intergenic 35.0%
!! GTGTAGTCAATTTTAGCACA+TGG + chr5_4:8546990-8547009 Msa0835230:intron 35.0%
TGGAAGACGTTGATCATAAT+AGG + chr5_4:8547010-8547029 Msa0835230:intron 35.0%
!! ATGGTGTTGTTTGTTCTATG+TGG + chr5_4:8547038-8547057 Msa0835230:intron 35.0%
ACCGCATAATCTTTGTCAAA+TGG + chr5_4:8547197-8547216 Msa0835230:intron 35.0%
CCCATTTGACAAAGATTATG+CGG - chr5_4:8547201-8547220 None:intergenic 35.0%
CCGCATAATCTTTGTCAAAT+GGG + chr5_4:8547198-8547217 Msa0835230:intron 35.0%
CGCATAATCTTTGTCAAATG+GGG + chr5_4:8547199-8547218 Msa0835230:intron 35.0%
!! CTTTGATGGATTAGAATGTG+AGG + chr5_4:8547243-8547262 Msa0835230:intron 35.0%
ATTAGAATGTGAGGGTCTTT+AGG + chr5_4:8547252-8547271 Msa0835230:intron 35.0%
TGTCACACACCCAAATAATA+AGG + chr5_4:8547287-8547306 Msa0835230:intron 35.0%
! TGGTGTACAATGCTGATTAA+AGG + chr5_4:8547431-8547450 Msa0835230:intron 35.0%
AAGATTCTGTACCACTGTAA+TGG + chr5_4:8547513-8547532 Msa0835230:intron 35.0%
! ATGCCGCTTATATTAGTTGA+TGG - chr5_4:8547601-8547620 None:intergenic 35.0%
ACTAATATAAGCGGCATGTT+TGG + chr5_4:8547604-8547623 Msa0835230:intron 35.0%
CTAATATAAGCGGCATGTTT+GGG + chr5_4:8547605-8547624 Msa0835230:intron 35.0%
GGATTCTAATACTGTTCTAC+CGG + chr5_4:8547639-8547658 Msa0835230:intron 35.0%
CTAACGCGAAAGAAACAAAA+TGG + chr5_4:8547742-8547761 Msa0835230:intron 35.0%
TATGCTTAGTTGACCAGTTT+CGG - chr5_4:8548005-8548024 None:intergenic 35.0%
! TGTTATTTGAGGATAAGGTG+TGG + chr5_4:8548125-8548144 Msa0835230:intron 35.0%
! GGGATGCATTTATGATTTTC+TGG + chr5_4:8548150-8548169 Msa0835230:intron 35.0%
! GTGAAAACTTTGTTTAGCAC+TGG - chr5_4:8548263-8548282 None:intergenic 35.0%
CATCAAGACAAAAAACTGGA+AGG + chr5_4:8548441-8548460 Msa0835230:CDS 35.0%
GGATGACCTTATAACAATTC+AGG + chr5_4:8548492-8548511 Msa0835230:CDS 35.0%
CACATAGACAAACATCAACA+TGG - chr5_4:8548578-8548597 None:intergenic 35.0%
GATCAGTAGCTCAGAAAATA+TGG - chr5_4:8548710-8548729 None:intergenic 35.0%
GACATGTTTATGTTATAGGC+TGG - chr5_4:8548833-8548852 None:intergenic 35.0%
GCCTATAACATAAACATGTC+GGG + chr5_4:8548833-8548852 Msa0835230:CDS 35.0%
TCCCGACATGTTTATGTTAT+AGG - chr5_4:8548837-8548856 None:intergenic 35.0%
! TGGAAAGGCACAAAAAGAAA+GGG + chr5_4:8548928-8548947 Msa0835230:CDS 35.0%
!! AGCAGTTTTATCACTTGATG+AGG - chr5_4:8549095-8549114 None:intergenic 35.0%
TATGCATGAGATGTATCACT+AGG - chr5_4:8549203-8549222 None:intergenic 35.0%
GTTAAAAGTCGTTACACTAC+TGG + chr5_4:8549308-8549327 Msa0835230:CDS 35.0%
TGATGTAGAAGTAAAAGACC+GGG - chr5_4:8549342-8549361 None:intergenic 35.0%
TGAGAAGAATCCAAAGAAGA+AGG + chr5_4:8549403-8549422 Msa0835230:CDS 35.0%
GAGAAGAATCCAAAGAAGAA+GGG + chr5_4:8549404-8549423 Msa0835230:CDS 35.0%
TGTACATATCCCTTCTTCTT+TGG - chr5_4:8549416-8549435 None:intergenic 35.0%
GTCACTCTTGATTTACTACA+AGG - chr5_4:8549594-8549613 None:intergenic 35.0%
TAGAGGTGGTGAATCAATTT+GGG + chr5_4:8549685-8549704 Msa0835230:CDS 35.0%
! AATTTGGGGAAAGCCTTTTA+AGG + chr5_4:8549700-8549719 Msa0835230:CDS 35.0%
ATTGACTACACTAGCAACAA+TGG + chr5_4:8549877-8549896 Msa0835230:CDS 35.0%
TACACTAGCAACAATGGAAA+AGG + chr5_4:8549883-8549902 Msa0835230:CDS 35.0%
ATTAATTTACGACTCACCAG+AGG - chr5_4:8549932-8549951 None:intergenic 35.0%
AAACCAGAAAAAGAGAGAGT+GGG - chr5_4:8549981-8550000 None:intergenic 35.0%
AAAACCAGAAAAAGAGAGAG+TGG - chr5_4:8549982-8550001 None:intergenic 35.0%
AATATTGTAATCCTAAGGCC+TGG - chr5_4:8550208-8550227 None:intergenic 35.0%
! ACTGTCATTTGTGAACATTG+AGG + chr5_4:8550232-8550251 Msa0835230:intron 35.0%
!! GCCCAGTTGATAATTGTTAA+TGG - chr5_4:8550368-8550387 None:intergenic 35.0%
TTGGCAAATACTTGAAAGCT+AGG + chr5_4:8550728-8550747 Msa0835230:CDS 35.0%
! TTTTCTCTTCTTTCCCACAA+CGG - chr5_4:8550797-8550816 None:intergenic 35.0%
CATAGTGGTTAATTACATGG+CGG - chr5_4:8551108-8551127 None:intergenic 35.0%
TTGGTTTATCACTTCTGTGG+TGG - chr5_4:8544681-8544700 None:intergenic 40.0%
AAACCAAAACCCTAGCAATG+GGG + chr5_4:8544694-8544713 Msa0835230:exon 40.0%
! TTCAGTTGCCCATTCTGTTT+TGG - chr5_4:8544754-8544773 None:intergenic 40.0%
AAACAGAATGGGCAACTGAA+TGG + chr5_4:8544754-8544773 Msa0835230:CDS 40.0%
AACAGAATGGGCAACTGAAT+GGG + chr5_4:8544755-8544774 Msa0835230:CDS 40.0%
! GAAAACGGTGCGATTTTCTT+TGG - chr5_4:8544793-8544812 None:intergenic 40.0%
TTTCCAGTTTGTACACCTGA+TGG + chr5_4:8544941-8544960 Msa0835230:CDS 40.0%
TTGGAATCACGGTGAGTATA+AGG + chr5_4:8545299-8545318 Msa0835230:intron 40.0%
GTATTGCCTATTGGCCAAAA+TGG + chr5_4:8545723-8545742 Msa0835230:intron 40.0%
TCATTGAATGCAAAAGCTCG+AGG + chr5_4:8545987-8546006 Msa0835230:intron 40.0%
CCATTACGTTTGGCAGAATA+AGG - chr5_4:8546014-8546033 None:intergenic 40.0%
CCTTATTCTGCCAAACGTAA+TGG + chr5_4:8546011-8546030 Msa0835230:intron 40.0%
TATGTTGCTACGGCAGATTT+AGG - chr5_4:8546179-8546198 None:intergenic 40.0%
TCATTTGCATGGATCGTAAC+TGG - chr5_4:8546577-8546596 None:intergenic 40.0%
GAACCTTTGATCTATACGAC+CGG + chr5_4:8546626-8546645 Msa0835230:intron 40.0%
AGAGTGGGAACAAAGATATG+CGG + chr5_4:8546685-8546704 Msa0835230:intron 40.0%
ATTTAGCGACTCTTTCCACT+AGG + chr5_4:8546806-8546825 Msa0835230:intron 40.0%
TAACAATTCAGCAAGCCTAG+TGG - chr5_4:8546824-8546843 None:intergenic 40.0%
!! TTGTACACCATGCTGATTCT+CGG - chr5_4:8547421-8547440 None:intergenic 40.0%
AAATCCCAGACTTAGGCTAT+AGG - chr5_4:8547544-8547563 None:intergenic 40.0%
CTGAAACAAATCCCAGACTT+AGG - chr5_4:8547551-8547570 None:intergenic 40.0%
! CTAAGTCTGGGATTTGTTTC+AGG + chr5_4:8547549-8547568 Msa0835230:intron 40.0%
!! GCGTTAGCTTGTAAGAATTC+AGG - chr5_4:8547729-8547748 None:intergenic 40.0%
TAGTTCACATACCTAGCGTT+GGG + chr5_4:8547797-8547816 Msa0835230:intron 40.0%
ATTTGAGGATAAGGTGTGGA+TGG + chr5_4:8548129-8548148 Msa0835230:intron 40.0%
TTTGAGGATAAGGTGTGGAT+GGG + chr5_4:8548130-8548149 Msa0835230:intron 40.0%
! GCTGGCTACTTTGTATTGAA+TGG + chr5_4:8548202-8548221 Msa0835230:intron 40.0%
CACTGAATTTACCCACATTG+TGG + chr5_4:8548280-8548299 Msa0835230:CDS 40.0%
!!! AGTTTTGACTGCCACAATGT+GGG - chr5_4:8548294-8548313 None:intergenic 40.0%
!!! TAGTTTTGACTGCCACAATG+TGG - chr5_4:8548295-8548314 None:intergenic 40.0%
ATTGTGGCAGTCAAAACTAC+TGG + chr5_4:8548296-8548315 Msa0835230:CDS 40.0%
TGGAAATGTCTTCTGCTATG+AGG + chr5_4:8548316-8548335 Msa0835230:CDS 40.0%
!! GCTATGAGGTTTGTTTTTCC+AGG + chr5_4:8548330-8548349 Msa0835230:intron 40.0%
AGTGTTAACACTAAGGATCC+TGG - chr5_4:8548351-8548370 None:intergenic 40.0%
CAAAATCCAGAAGAACCTTC+TGG - chr5_4:8548628-8548647 None:intergenic 40.0%
GAAAGGAAACTGCATTGCAT+GGG + chr5_4:8548897-8548916 Msa0835230:CDS 40.0%
AAAGGAAACTGCATTGCATG+GGG + chr5_4:8548898-8548917 Msa0835230:CDS 40.0%
! GTGGAAAGGCACAAAAAGAA+AGG + chr5_4:8548927-8548946 Msa0835230:CDS 40.0%
TTGTGATCGTGCAGCTAAAA+TGG - chr5_4:8548969-8548988 None:intergenic 40.0%
CATGAGATGTATCACTAGGT+AGG - chr5_4:8549199-8549218 None:intergenic 40.0%
GTACAACTGCATACAACACA+CGG + chr5_4:8549431-8549450 Msa0835230:CDS 40.0%
CTACAAGGACAAAGACACAA+AGG - chr5_4:8549579-8549598 None:intergenic 40.0%
GTAGAGGTGGTGAATCAATT+TGG + chr5_4:8549684-8549703 Msa0835230:CDS 40.0%
AGAGGTGGTGAATCAATTTG+GGG + chr5_4:8549686-8549705 Msa0835230:CDS 40.0%
AACTCCAAATTAGTCCACTC+TGG + chr5_4:8549731-8549750 Msa0835230:CDS 40.0%
! CAAATTAGTCCACTCTGGAA+GGG + chr5_4:8549736-8549755 Msa0835230:CDS 40.0%
! AAATTAGTCCACTCTGGAAG+GGG + chr5_4:8549737-8549756 Msa0835230:CDS 40.0%
ACTGGGAACCATTAGTATGT+GGG - chr5_4:8549787-8549806 None:intergenic 40.0%
AACTGGGAACCATTAGTATG+TGG - chr5_4:8549788-8549807 None:intergenic 40.0%
AACCAGAAAAAGAGAGAGTG+GGG - chr5_4:8549980-8549999 None:intergenic 40.0%
TTGGACTATCTTGAGTACAG+TGG + chr5_4:8550257-8550276 Msa0835230:intron 40.0%
GTCTCATCATTCCTTAAGAG+AGG + chr5_4:8550289-8550308 Msa0835230:intron 40.0%
!! TTTATTCTTTGGCTTGCAGG+AGG + chr5_4:8550423-8550442 Msa0835230:intron 40.0%
CAGGAGGAAATCAAGATAAC+AGG + chr5_4:8550439-8550458 Msa0835230:intron 40.0%
!! TTGGTTTGCATTTCAGGACA+AGG + chr5_4:8550636-8550655 Msa0835230:intron 40.0%
TTTGCATTTCAGGACAAGGT+TGG + chr5_4:8550640-8550659 Msa0835230:intron 40.0%
! GATTTTCAGCGGCGAGTTAT+TGG - chr5_4:8544599-8544618 None:intergenic 45.0%
CAATCTATGGGATTGGGTTC+CGG - chr5_4:8544630-8544649 None:intergenic 45.0%
TTGCTTCTTCCCCATTGCTA+GGG - chr5_4:8544706-8544725 None:intergenic 45.0%
ACAGAATGGGCAACTGAATG+GGG + chr5_4:8544756-8544775 Msa0835230:CDS 45.0%
! GTGGTTTTCAACTTGGGTTC+AGG + chr5_4:8545440-8545459 Msa0835230:intron 45.0%
! TGCAGTTGTGAGTTGAGCTT+CGG + chr5_4:8545648-8545667 Msa0835230:intron 45.0%
TTGAGCTTCGGATTGACGTA+GGG + chr5_4:8545660-8545679 Msa0835230:intron 45.0%
GCCATGTCAGTATGTTGCTA+CGG - chr5_4:8546189-8546208 None:intergenic 45.0%
GCATGTTATGCTGTAGCCTA+TGG + chr5_4:8546207-8546226 Msa0835230:intron 45.0%
TGTAGCCTATGGTGAAAGCA+GGG + chr5_4:8546218-8546237 Msa0835230:intron 45.0%
! TCTGAAATGACGTGTGAGAG+TGG + chr5_4:8546669-8546688 Msa0835230:intron 45.0%
CTGAAATGACGTGTGAGAGT+GGG + chr5_4:8546670-8546689 Msa0835230:intron 45.0%
TGCAGCACATCATACTACCT+TGG + chr5_4:8546928-8546947 Msa0835230:intron 45.0%
GCTGTAATAAGGTGGTACCA+AGG - chr5_4:8546948-8546967 None:intergenic 45.0%
TATAGGCAGCACCATTACAG+TGG - chr5_4:8547527-8547546 None:intergenic 45.0%
CATGTTTGGGAGAACTTCCT+AGG + chr5_4:8547618-8547637 Msa0835230:intron 45.0%
CTAGTTCACATACCTAGCGT+TGG + chr5_4:8547796-8547815 Msa0835230:intron 45.0%
GCTGAGATATTCTCCGAAAC+TGG + chr5_4:8547989-8548008 Msa0835230:intron 45.0%
! GCTTTTCTTTGTTCCTCTGC+AGG + chr5_4:8548224-8548243 Msa0835230:intron 45.0%
ACAGTGATATTCTCCTGCAG+AGG - chr5_4:8548240-8548259 None:intergenic 45.0%
ATCCCTAGTAAATGCCTCGT+CGG - chr5_4:8548476-8548495 None:intergenic 45.0%
TCCTAATGCACTTGACCAGA+AGG + chr5_4:8548610-8548629 Msa0835230:CDS 45.0%
ACCTTCTGGTCAAGTGCATT+AGG - chr5_4:8548614-8548633 None:intergenic 45.0%
ACTTGACCAGAAGGTTCTTC+TGG + chr5_4:8548619-8548638 Msa0835230:CDS 45.0%
AAAGAGCTTGGAACTGAGCA+AGG + chr5_4:8548875-8548894 Msa0835230:CDS 45.0%
GGAAAGGAAACTGCATTGCA+TGG + chr5_4:8548896-8548915 Msa0835230:CDS 45.0%
AAGGAAACTGCATTGCATGG+GGG + chr5_4:8548899-8548918 Msa0835230:CDS 45.0%
GAAGATTCCAAATCGACCGA+TGG + chr5_4:8548995-8549014 Msa0835230:CDS 45.0%
TCTACAATACTGAGTGCCTG+AGG - chr5_4:8549025-8549044 None:intergenic 45.0%
TGCACTTCTTCCATGTACTG+CGG - chr5_4:8549059-8549078 None:intergenic 45.0%
TGCCAGAATAGCTATGCATG+TGG + chr5_4:8549114-8549133 Msa0835230:CDS 45.0%
AGCCACATGCATAGCTATTC+TGG - chr5_4:8549119-8549138 None:intergenic 45.0%
AGAATAGCTATGCATGTGGC+TGG + chr5_4:8549118-8549137 Msa0835230:CDS 45.0%
CTCACCATCTTTGCATTCAC+CGG - chr5_4:8549154-8549173 None:intergenic 45.0%
TTCATCACGCTTTGTGAACG+TGG + chr5_4:8549506-8549525 Msa0835230:CDS 45.0%
CAAGGACAAAGACACAAAGG+TGG - chr5_4:8549576-8549595 None:intergenic 45.0%
!! CCTTCCAGAGTGGACTAATT+TGG - chr5_4:8549738-8549757 None:intergenic 45.0%
CCAAATTAGTCCACTCTGGA+AGG + chr5_4:8549735-8549754 Msa0835230:CDS 45.0%
GTAGTTAGCATGGCAAACAG+TGG + chr5_4:8549761-8549780 Msa0835230:CDS 45.0%
AACAGTGGCCCACATACTAA+TGG + chr5_4:8549776-8549795 Msa0835230:CDS 45.0%
!! ACAGTTTTTGGAGGCGTAGT+TGG + chr5_4:8549851-8549870 Msa0835230:CDS 45.0%
ATTTACGACTCACCAGAGGT+CGG - chr5_4:8549928-8549947 None:intergenic 45.0%
ACCAGAAAAAGAGAGAGTGG+GGG - chr5_4:8549979-8549998 None:intergenic 45.0%
TACCTTTGCATCTGTCTAGC+TGG + chr5_4:8550118-8550137 Msa0835230:intron 45.0%
AACCAGCTAGACAGATGCAA+AGG - chr5_4:8550123-8550142 None:intergenic 45.0%
TTGCATCTGTCTAGCTGGTT+TGG + chr5_4:8550123-8550142 Msa0835230:intron 45.0%
TAATCCTAAGGCCTGGAACA+GGG - chr5_4:8550201-8550220 None:intergenic 45.0%
! CATTGGTTGTGTTGACAGCA+TGG - chr5_4:8550390-8550409 None:intergenic 45.0%
CATGCTGTCAACACAACCAA+TGG + chr5_4:8550388-8550407 Msa0835230:intron 45.0%
GGCTCATGGTATAGTAATCC+TGG + chr5_4:8550661-8550680 Msa0835230:CDS 45.0%
TGGTATAGTAATCCTGGAGC+TGG + chr5_4:8550667-8550686 Msa0835230:CDS 45.0%
! ACATCTGAATCTGGAGGTAC+AGG + chr5_4:8550691-8550710 Msa0835230:CDS 45.0%
AAGAGAAAAGCAGCTGTCAG+TGG + chr5_4:8550808-8550827 Msa0835230:CDS 45.0%
!!! TTTTTTTTTTTTTGAAATAT+TGG + chr5_4:8545902-8545921 Msa0835230:intron 5.0%
CCACCCAAAAAACCTCCACA+CGG + chr5_4:8544550-8544569 Msa0835230:five_prime_UTR 50.0%
! CTTCCCCATTGCTAGGGTTT+TGG - chr5_4:8544700-8544719 None:intergenic 50.0%
GTTGCTTCTTCCCCATTGCT+AGG - chr5_4:8544707-8544726 None:intergenic 50.0%
ACGCACGCGCAGCAATAAAA+AGG - chr5_4:8544825-8544844 None:intergenic 50.0%
CTGCCATCAGGTGTACAAAC+TGG - chr5_4:8544947-8544966 None:intergenic 50.0%
TTCAAGGGAGCTCCAGTAAC+AGG - chr5_4:8545502-8545521 None:intergenic 50.0%
GTTGAGCTTCGGATTGACGT+AGG + chr5_4:8545659-8545678 Msa0835230:intron 50.0%
TGAGCTTCGGATTGACGTAG+GGG + chr5_4:8545661-8545680 Msa0835230:intron 50.0%
TCGAGTGTAGCGTACTTGGT+AGG + chr5_4:8545865-8545884 Msa0835230:intron 50.0%
GCCGTAGCAACATACTGACA+TGG + chr5_4:8546185-8546204 Msa0835230:intron 50.0%
CTGTAGCCTATGGTGAAAGC+AGG + chr5_4:8546217-8546236 Msa0835230:intron 50.0%
GCCCTTGAACCACTGAACAA+CGG + chr5_4:8546364-8546383 Msa0835230:intron 50.0%
CCCGTTGTTCAGTGGTTCAA+GGG - chr5_4:8546368-8546387 None:intergenic 50.0%
CCCTTGAACCACTGAACAAC+GGG + chr5_4:8546365-8546384 Msa0835230:intron 50.0%
ACCCGTTGTTCAGTGGTTCA+AGG - chr5_4:8546369-8546388 None:intergenic 50.0%
GAACCACTGAACAACGGGTA+CGG + chr5_4:8546370-8546389 Msa0835230:intron 50.0%
AACCACTGAACAACGGGTAC+GGG + chr5_4:8546371-8546390 Msa0835230:intron 50.0%
GGGATTGAGACCCAGAAAAG+AGG + chr5_4:8546475-8546494 Msa0835230:intron 50.0%
GCTCCGGTCGTATAGATCAA+AGG - chr5_4:8546632-8546651 None:intergenic 50.0%
GATCTATACGACCGGAGCAT+TGG + chr5_4:8546634-8546653 Msa0835230:intron 50.0%
!! TACGACCGGAGCATTGGAAA+TGG + chr5_4:8546640-8546659 Msa0835230:intron 50.0%
!! ACGACCGGAGCATTGGAAAT+GGG + chr5_4:8546641-8546660 Msa0835230:intron 50.0%
CACTCCCATTTCCAATGCTC+CGG - chr5_4:8546648-8546667 None:intergenic 50.0%
ATGGCCTGACAGCTTTCACA+CGG - chr5_4:8546881-8546900 None:intergenic 50.0%
TGTCTCTCCGAGAATCAGCA+TGG + chr5_4:8547411-8547430 Msa0835230:intron 50.0%
TGCTGCCTATAGCCTAAGTC+TGG + chr5_4:8547536-8547555 Msa0835230:intron 50.0%
GCTGCCTATAGCCTAAGTCT+GGG + chr5_4:8547537-8547556 Msa0835230:intron 50.0%
! TTCACATACCTAGCGTTGGG+AGG + chr5_4:8547800-8547819 Msa0835230:intron 50.0%
! TCACATACCTAGCGTTGGGA+GGG + chr5_4:8547801-8547820 Msa0835230:intron 50.0%
ATACAAACCCTCCCAACGCT+AGG - chr5_4:8547811-8547830 None:intergenic 50.0%
GCGTTGGGAGGGTTTGTATA+TGG + chr5_4:8547812-8547831 Msa0835230:intron 50.0%
TAGTAAATGCCTCGTCGGTG+AGG - chr5_4:8548471-8548490 None:intergenic 50.0%
! TCACCGACGAGGCATTTACT+AGG + chr5_4:8548470-8548489 Msa0835230:CDS 50.0%
! CACCGACGAGGCATTTACTA+GGG + chr5_4:8548471-8548490 Msa0835230:CDS 50.0%
GCTTGGAACTGAGCAAGGAA+AGG + chr5_4:8548880-8548899 Msa0835230:CDS 50.0%
TAAAATGGCAGCGAGTGCAG+CGG - chr5_4:8548954-8548973 None:intergenic 50.0%
TATGCATGTGGCTGGTGACA+GGG + chr5_4:8549126-8549145 Msa0835230:CDS 50.0%
ATGAAGTTCTCGCATGCCCT+GGG - chr5_4:8549491-8549510 None:intergenic 50.0%
ATACAAGGTGGCGATCCTAC+TGG + chr5_4:8549656-8549675 Msa0835230:CDS 50.0%
!! GATCCTACTGGTACTGGTAG+AGG + chr5_4:8549668-8549687 Msa0835230:CDS 50.0%
TAACTACACCCCTTCCAGAG+TGG - chr5_4:8549748-8549767 None:intergenic 50.0%
! TGGAAGGGGTGTAGTTAGCA+TGG + chr5_4:8549751-8549770 Msa0835230:CDS 50.0%
!! GTTTTTGGAGGCGTAGTTGG+TGG + chr5_4:8549854-8549873 Msa0835230:CDS 50.0%
! ACCCCCACTCTCTCTTTTTC+TGG + chr5_4:8549975-8549994 Msa0835230:intron 50.0%
!! TGTCTAGCTGGTTTGGACCT+TGG + chr5_4:8550130-8550149 Msa0835230:intron 50.0%
!! GTCTAGCTGGTTTGGACCTT+GGG + chr5_4:8550131-8550150 Msa0835230:intron 50.0%
AGTCTGCATATCCCTGTTCC+AGG + chr5_4:8550187-8550206 Msa0835230:intron 50.0%
ATATCCCTGTTCCAGGCCTT+AGG + chr5_4:8550194-8550213 Msa0835230:intron 50.0%
GTAATCCTAAGGCCTGGAAC+AGG - chr5_4:8550202-8550221 None:intergenic 50.0%
CTCTTCTTCCTCATCTGGCT+CGG - chr5_4:8550491-8550510 None:intergenic 50.0%
GCTTGCTCTTCTTCCTCATC+TGG - chr5_4:8550496-8550515 None:intergenic 50.0%
! TTCAGGACAAGGTTGGCTCA+TGG + chr5_4:8550647-8550666 Msa0835230:intron 50.0%
GATTCAGATGTTCCAGCTCC+AGG - chr5_4:8550682-8550701 None:intergenic 50.0%
GGAGCTGGAACATCTGAATC+TGG + chr5_4:8550682-8550701 Msa0835230:CDS 50.0%
GCTGGAACATCTGAATCTGG+AGG + chr5_4:8550685-8550704 Msa0835230:CDS 50.0%
! GAATCTGGAGGTACAGGTGT+TGG + chr5_4:8550697-8550716 Msa0835230:CDS 50.0%
GAAAGCTAGGAATGCTCCAC+CGG + chr5_4:8550741-8550760 Msa0835230:CDS 50.0%
GTTGCACTCATGTTCCGTTG+TGG + chr5_4:8551035-8551054 Msa0835230:three_prime_UTR 50.0%
!!! CCGTGTGGAGGTTTTTTGGG+TGG - chr5_4:8544553-8544572 None:intergenic 55.0%
!!! CCGCCGTGTGGAGGTTTTTT+GGG - chr5_4:8544556-8544575 None:intergenic 55.0%
CCCAAAAAACCTCCACACGG+CGG + chr5_4:8544553-8544572 Msa0835230:five_prime_UTR 55.0%
!!! ACCGCCGTGTGGAGGTTTTT+TGG - chr5_4:8544557-8544576 None:intergenic 55.0%
!! GTTTGATTTGCACCGCCGTG+TGG - chr5_4:8544568-8544587 None:intergenic 55.0%
AACTCGCCGCTGAAAATCGC+CGG + chr5_4:8544601-8544620 Msa0835230:five_prime_UTR 55.0%
! CGGTTTCCGGCGATTTTCAG+CGG - chr5_4:8544610-8544629 None:intergenic 55.0%
CGCTGAAAATCGCCGGAAAC+CGG + chr5_4:8544608-8544627 Msa0835230:five_prime_UTR 55.0%
TGGGATTGGGTTCCGGTTTC+CGG - chr5_4:8544623-8544642 None:intergenic 55.0%
GAATGGGCAACTGAATGGGG+AGG + chr5_4:8544759-8544778 Msa0835230:CDS 55.0%
ACATCGAAGACGCTGCCATC+AGG - chr5_4:8544959-8544978 None:intergenic 55.0%
CAGGTCGAGTGTAGCGTACT+TGG + chr5_4:8545861-8545880 Msa0835230:intron 55.0%
AGCCTATGGTGAAAGCAGGG+TGG + chr5_4:8546221-8546240 Msa0835230:intron 55.0%
AGCCACCCTGCTTTCACCAT+AGG - chr5_4:8546226-8546245 None:intergenic 55.0%
ATCCCGTACCCGTTGTTCAG+TGG - chr5_4:8546376-8546395 None:intergenic 55.0%
!! CGGAGCATTGGAAATGGGAG+TGG + chr5_4:8546646-8546665 Msa0835230:intron 55.0%
AGCTTTCACACGGAGGCCAA+AGG - chr5_4:8546871-8546890 None:intergenic 55.0%
GTCAGGCCATAGCCATCACA+TGG + chr5_4:8546891-8546910 Msa0835230:intron 55.0%
GAAACTGCATTGCATGGGGG+AGG + chr5_4:8548902-8548921 Msa0835230:CDS 55.0%
AGGAGCTCCATCGGTCGATT+TGG - chr5_4:8549005-8549024 None:intergenic 55.0%
CTATGCATGTGGCTGGTGAC+AGG + chr5_4:8549125-8549144 Msa0835230:CDS 55.0%
!! GGCACCGGTGAATGCAAAGA+TGG + chr5_4:8549147-8549166 Msa0835230:CDS 55.0%
TGCACTGTGATATAGCGCCC+AGG + chr5_4:8549471-8549490 Msa0835230:CDS 55.0%
GCACTGTGATATAGCGCCCA+GGG + chr5_4:8549472-8549491 Msa0835230:CDS 55.0%
GATGAAGTTCTCGCATGCCC+TGG - chr5_4:8549492-8549511 None:intergenic 55.0%
CCACCTCTACCAGTACCAGT+AGG - chr5_4:8549674-8549693 None:intergenic 55.0%
!! CCTACTGGTACTGGTAGAGG+TGG + chr5_4:8549671-8549690 Msa0835230:CDS 55.0%
GGTCGGTCACTGTCATCAAC+AGG - chr5_4:8549911-8549930 None:intergenic 55.0%
TGATGACAGTGACCGACCTC+TGG + chr5_4:8549913-8549932 Msa0835230:CDS 55.0%
TCCTTACACCGAGCCAGATG+AGG + chr5_4:8550480-8550499 Msa0835230:CDS 55.0%
!! TCCTCATCTGGCTCGGTGTA+AGG - chr5_4:8550484-8550503 None:intergenic 55.0%
!! TCTGGAGGTACAGGTGTTGG+CGG + chr5_4:8550700-8550719 Msa0835230:CDS 55.0%
GACACTGGTACAGCCGTTGT+GGG + chr5_4:8550781-8550800 Msa0835230:CDS 55.0%
! TGATTTGCACCGCCGTGTGG+AGG - chr5_4:8544565-8544584 None:intergenic 60.0%
GCCTCCGTGTGAAAGCTGTC+AGG + chr5_4:8546874-8546893 Msa0835230:intron 60.0%
GCCTGACAGCTTTCACACGG+AGG - chr5_4:8546878-8546897 None:intergenic 60.0%
ACTGCATTGCATGGGGGAGG+TGG + chr5_4:8548905-8548924 Msa0835230:CDS 60.0%
ATCGACCGATGGAGCTCCTC+AGG + chr5_4:8549006-8549025 Msa0835230:CDS 60.0%
GAGTGCCTGAGGAGCTCCAT+CGG - chr5_4:8549014-8549033 None:intergenic 60.0%
GCTGCATCTGCCGCAGTACA+TGG + chr5_4:8549046-8549065 Msa0835230:CDS 60.0%
ACACTACTGGCGCTGCTTCC+CGG + chr5_4:8549321-8549340 Msa0835230:CDS 60.0%
GGTGGCGATCCTACTGGTAC+TGG + chr5_4:8549662-8549681 Msa0835230:CDS 60.0%
!! ACAGGTGTTGGCGGTGGTGT+TGG + chr5_4:8550709-8550728 Msa0835230:CDS 60.0%
TCGACAGCAGCAGGTTCAGC+CGG - chr5_4:8550763-8550782 None:intergenic 60.0%
GAACCTGCTGCTGTCGACAC+TGG + chr5_4:8550766-8550785 Msa0835230:CDS 60.0%
!! GTACCAGTGTCGACAGCAGC+AGG - chr5_4:8550772-8550791 None:intergenic 60.0%
CGACACTGGTACAGCCGTTG+TGG + chr5_4:8550780-8550799 Msa0835230:CDS 60.0%
GAAGGAGCTCCTCACCGACG+AGG + chr5_4:8548459-8548478 Msa0835230:CDS 65.0%
GCATTGCATGGGGGAGGTGG+TGG + chr5_4:8548908-8548927 Msa0835230:CDS 65.0%
!! GCATGGGGGAGGTGGTGGAA+AGG + chr5_4:8548913-8548932 Msa0835230:CDS 65.0%
TGTGGCTGGTGACAGGGCAC+CGG + chr5_4:8549132-8549151 Msa0835230:CDS 65.0%
!! GGAGGTACAGGTGTTGGCGG+TGG + chr5_4:8550703-8550722 Msa0835230:CDS 65.0%
ACAGCAGCAGGTTCAGCCGG+TGG - chr5_4:8550760-8550779 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 8544516 8551137 8544516 ID=Msa0835230;Name=Msa0835230
chr5_4 mRNA 8544516 8551137 8544516 ID=Msa0835230-mRNA-1;Parent=Msa0835230;Name=Msa0835230-mRNA-1;_AED=0.12;_eAED=0.12;_QI=195|1|1|1|1|1|11|279|592
chr5_4 exon 8544516 8544838 8544516 ID=Msa0835230-mRNA-1:exon:3766;Parent=Msa0835230-mRNA-1
chr5_4 exon 8544919 8544981 8544919 ID=Msa0835230-mRNA-1:exon:3767;Parent=Msa0835230-mRNA-1
chr5_4 exon 8545462 8545565 8545462 ID=Msa0835230-mRNA-1:exon:3768;Parent=Msa0835230-mRNA-1
chr5_4 exon 8548246 8548337 8548246 ID=Msa0835230-mRNA-1:exon:3769;Parent=Msa0835230-mRNA-1
chr5_4 exon 8548424 8548513 8548424 ID=Msa0835230-mRNA-1:exon:3770;Parent=Msa0835230-mRNA-1
chr5_4 exon 8548608 8548683 8548608 ID=Msa0835230-mRNA-1:exon:3771;Parent=Msa0835230-mRNA-1
chr5_4 exon 8548807 8549168 8548807 ID=Msa0835230-mRNA-1:exon:3772;Parent=Msa0835230-mRNA-1
chr5_4 exon 8549308 8549564 8549308 ID=Msa0835230-mRNA-1:exon:3773;Parent=Msa0835230-mRNA-1
chr5_4 exon 8549646 8549934 8549646 ID=Msa0835230-mRNA-1:exon:3774;Parent=Msa0835230-mRNA-1
chr5_4 exon 8550442 8550552 8550442 ID=Msa0835230-mRNA-1:exon:3775;Parent=Msa0835230-mRNA-1
chr5_4 exon 8550652 8551137 8550652 ID=Msa0835230-mRNA-1:exon:3776;Parent=Msa0835230-mRNA-1
chr5_4 five_prime_UTR 8544516 8544710 8544516 ID=Msa0835230-mRNA-1:five_prime_utr;Parent=Msa0835230-mRNA-1
chr5_4 CDS 8544711 8544838 8544711 ID=Msa0835230-mRNA-1:cds;Parent=Msa0835230-mRNA-1
chr5_4 CDS 8544919 8544981 8544919 ID=Msa0835230-mRNA-1:cds;Parent=Msa0835230-mRNA-1
chr5_4 CDS 8545462 8545565 8545462 ID=Msa0835230-mRNA-1:cds;Parent=Msa0835230-mRNA-1
chr5_4 CDS 8548246 8548337 8548246 ID=Msa0835230-mRNA-1:cds;Parent=Msa0835230-mRNA-1
chr5_4 CDS 8548424 8548513 8548424 ID=Msa0835230-mRNA-1:cds;Parent=Msa0835230-mRNA-1
chr5_4 CDS 8548608 8548683 8548608 ID=Msa0835230-mRNA-1:cds;Parent=Msa0835230-mRNA-1
chr5_4 CDS 8548807 8549168 8548807 ID=Msa0835230-mRNA-1:cds;Parent=Msa0835230-mRNA-1
chr5_4 CDS 8549308 8549564 8549308 ID=Msa0835230-mRNA-1:cds;Parent=Msa0835230-mRNA-1
chr5_4 CDS 8549646 8549934 8549646 ID=Msa0835230-mRNA-1:cds;Parent=Msa0835230-mRNA-1
chr5_4 CDS 8550442 8550552 8550442 ID=Msa0835230-mRNA-1:cds;Parent=Msa0835230-mRNA-1
chr5_4 CDS 8550652 8550858 8550652 ID=Msa0835230-mRNA-1:cds;Parent=Msa0835230-mRNA-1
chr5_4 three_prime_UTR 8550859 8551137 8550859 ID=Msa0835230-mRNA-1:three_prime_utr;Parent=Msa0835230-mRNA-1
Gene Sequence

>Msa0835230

ATGGGGAAGAAGCAACACAGCAAAGACCGAATGTTCTTAACCAAAACAGAATGGGCAACTGAATGGGGAGGTTACAAATCCAAAGAAAATCGCACCGTTTTCAAACGTCTTCCTTTTTATTGCTGCGCACTTACTTTTACTCCGTTTGAGTTTCCAGTTTGTACACCTGATGGCAGCGTCTTCGATGTTATGAACATAACTCCATATATTATAAAATATGGTAAACATCCTGTTACTGGAGCTCCCTTGAAGCAACAAGATCTCATTCCACTAACTTTTCACAAGAACTCAGAAGGAGAATATCACTGTCCAGTGCTAAACAAAGTTTTCACTGAATTTACCCACATTGTGGCAGTCAAAACTACTGGAAATGTCTTCTGCTATGAGGCTGTTAAAGAGTTAAACATCAAGACAAAAAACTGGAAGGAGCTCCTCACCGACGAGGCATTTACTAGGGATGACCTTATAACAATTCAGAATCCTAATGCACTTGACCAGAAGGTTCTTCTGGATTTTGATCATGTTAAACAGAATTTGAAAATTGACGATGAAGAACTACAGAAAATGAGTTCAGATCCAGCCTATAACATAAACATGTCGGGAGATATCAAACAAATGCTTAAAGAGCTTGGAACTGAGCAAGGAAAGGAAACTGCATTGCATGGGGGAGGTGGTGGAAAGGCACAAAAAGAAAGGGCCGCTGCACTCGCTGCCATTTTAGCTGCACGATCACAAGTTAAAGAAGATTCCAAATCGACCGATGGAGCTCCTCAGGCACTCAGTATTGTAGATGCTGCATCTGCCGCAGTACATGGAAGAAGTGCAGCTGCTGCTAAAGCCTCATCAAGTGATAAAACTGCTGCCAGAATAGCTATGCATGTGGCTGGTGACAGGGCACCGGTGAATGCAAAGATGGTTAAAAGTCGTTACACTACTGGCGCTGCTTCCCGGTCTTTTACTTCTACATCATATGATCCAGTTACAAAAAATGATTATGAATATGTGAAAGTTGAGAAGAATCCAAAGAAGAAGGGATATGTACAACTGCATACAACACACGGTGATTTGAACATTGAGCTGCACTGTGATATAGCGCCCAGGGCATGCGAGAACTTCATCACGCTTTGTGAACGTGGATATTATAACGGAGTTGCTTTTCATAGAAGCATTAGGAATTTTATGATACAAGGTGGCGATCCTACTGGTACTGGTAGAGGTGGTGAATCAATTTGGGGAAAGCCTTTTAAGGATGAACTTAACTCCAAATTAGTCCACTCTGGAAGGGGTGTAGTTAGCATGGCAAACAGTGGCCCACATACTAATGGTTCCCAGTTTTTCATATTGTACAAATCTGCAAATCATTTAAACTTCAAACATACAGTTTTTGGAGGCGTAGTTGGTGGATTGACTACACTAGCAACAATGGAAAAGGTTCCTGTTGATGACAGTGACCGACCTCTGGAGGAAATCAAGATAACAGGTGTCACAACTTTTGTCAATCCTTACACCGAGCCAGATGAGGAAGAAGAGCAAGCTAATGCCAAAGAGAAGAATGCAAATGATGAAGAAAATGACAAGGTTGGCTCATGGTATAGTAATCCTGGAGCTGGAACATCTGAATCTGGAGGTACAGGTGTTGGCGGTGGTGTTGGCAAATACTTGAAAGCTAGGAATGCTCCACCGGCTGAACCTGCTGCTGTCGACACTGGTACAGCCGTTGTGGGAAAGAAGAGAAAAGCAGCTGTCAGTGGTGAATTTAAAGATTTTTCTGGATGGTAG
Protein sequence

>Msa0835230

MGKKQHSKDRMFLTKTEWATEWGGYKSKENRTVFKRLPFYCCALTFTPFEFPVCTPDGSVFDVMNITPYIIKYGKHPVTGAPLKQQDLIPLTFHKNSEGEYHCPVLNKVFTEFTHIVAVKTTGNVFCYEAVKELNIKTKNWKELLTDEAFTRDDLITIQNPNALDQKVLLDFDHVKQNLKIDDEELQKMSSDPAYNINMSGDIKQMLKELGTEQGKETALHGGGGGKAQKERAAALAAILAARSQVKEDSKSTDGAPQALSIVDAASAAVHGRSAAAAKASSSDKTAARIAMHVAGDRAPVNAKMVKSRYTTGAASRSFTSTSYDPVTKNDYEYVKVEKNPKKKGYVQLHTTHGDLNIELHCDIAPRACENFITLCERGYYNGVAFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDELNSKLVHSGRGVVSMANSGPHTNGSQFFILYKSANHLNFKHTVFGGVVGGLTTLATMEKVPVDDSDRPLEEIKITGVTTFVNPYTEPDEEEEQANAKEKNANDEENDKVGSWYSNPGAGTSESGGTGVGGGVGKYLKARNAPPAEPAAVDTGTAVVGKKRKAAVSGEFKDFSGW*