Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015610 | Msa0287170 | 0.809522 | 1.815195e-50 | -8.615850e-47 |
| Msa0171540 | Msa0287170 | 0.801962 | 7.027868e-49 | -8.615850e-47 |
| Msa0248770 | Msa0287170 | 0.815267 | 1.009026e-51 | -8.615850e-47 |
| Msa0279220 | Msa0287170 | 0.814815 | 1.271031e-51 | -8.615850e-47 |
| Msa0280090 | Msa0287170 | 0.800907 | 1.156081e-48 | -8.615850e-47 |
| Msa0287170 | Msa0330340 | 0.802849 | 4.614974e-49 | -8.615850e-47 |
| Msa0287170 | Msa0383800 | 0.803061 | 4.171286e-49 | -8.615850e-47 |
| Msa0287170 | Msa0481530 | 0.805334 | 1.403273e-49 | -8.615850e-47 |
| Msa0287170 | Msa0529890 | 0.811347 | 7.326685e-51 | -8.615850e-47 |
| Msa0287170 | Msa0585560 | 0.813882 | 2.043464e-51 | -8.615850e-47 |
| Msa0287170 | Msa0590990 | 0.808389 | 3.172093e-50 | -8.615850e-47 |
| Msa0287170 | Msa0625720 | 0.806257 | 8.980161e-50 | -8.615850e-47 |
| Msa0287170 | Msa0663390 | 0.812157 | 4.882333e-51 | -8.615850e-47 |
| Msa0287170 | Msa0692830 | 0.811682 | 6.197428e-51 | -8.615850e-47 |
| Msa0287170 | Msa0692950 | 0.811729 | 6.052484e-51 | -8.615850e-47 |
| Msa0287170 | Msa1109680 | 0.810642 | 1.041256e-50 | -8.615850e-47 |
| Msa0287170 | Msa1124960 | 0.809774 | 1.602301e-50 | -8.615850e-47 |
| Msa0287170 | Msa1167340 | 0.804796 | 1.819108e-49 | -8.615850e-47 |
| Msa0287170 | Msa1181250 | 0.809929 | 1.484221e-50 | -8.615850e-47 |
| Msa0287170 | Msa1228590 | 0.813772 | 2.160744e-51 | -8.615850e-47 |
| Msa0287170 | Msa1348890 | 0.806662 | 7.376548e-50 | -8.615850e-47 |
| Msa0287170 | Msa1353980 | 0.801242 | 9.877444e-49 | -8.615850e-47 |
| Msa0287170 | Msa1392780 | 0.803833 | 2.886644e-49 | -8.615850e-47 |
| Msa0287170 | Msa1423390 | 0.801445 | 8.973808e-49 | -8.615850e-47 |
| Msa0287170 | Msa1439320 | 0.803172 | 3.958184e-49 | -8.615850e-47 |
| Msa0287170 | Msa1440370 | 0.800392 | 1.472761e-48 | -8.615850e-47 |
| Msa0287170 | Msa1440810 | 0.804426 | 2.172853e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 22 sgRNAs with CRISPR-Local
Find 258 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTAGCCGGTGATCGTTTA+TGG | 0.141582 | 2_3:-29163006 | Msa0287170:CDS |
| TAAATTAAGTGTATGTAAAA+TGG | 0.238175 | 2_3:+29158972 | None:intergenic |
| CTCACAAATGAATCCTTCTT+TGG | 0.240303 | 2_3:-29162950 | Msa0287170:CDS |
| CCCCTTTGAAAGGCAAATTT+TGG | 0.247207 | 2_3:+29162849 | None:intergenic |
| AACGATCACCGGCTAGAATA+TGG | 0.300940 | 2_3:+29163011 | None:intergenic |
| ACCAAAATTTGCCTTTCAAA+GGG | 0.392604 | 2_3:-29162850 | Msa0287170:CDS |
| TCTAGCCGGTGATCGTTTAT+GGG | 0.394514 | 2_3:-29163005 | Msa0287170:CDS |
| ATACACTTAATTTACAGTAC+TGG | 0.409899 | 2_3:-29158963 | Msa0287170:CDS |
| TACCAAAATTTGCCTTTCAA+AGG | 0.429080 | 2_3:-29162851 | Msa0287170:CDS |
| TCAAAGGGGAGGCAAAGATA+TGG | 0.453966 | 2_3:-29162835 | Msa0287170:CDS |
| AGGCAAAGATATGGACTTGA+AGG | 0.477449 | 2_3:-29162826 | Msa0287170:CDS |
| TCCATCTTCTTAGAGTGTGA+TGG | 0.481799 | 2_3:-29164214 | Msa0287170:intron |
| ATCTTTGCCTCCCCTTTGAA+AGG | 0.509209 | 2_3:+29162839 | None:intergenic |
| GGTGGAAGACACAGTAATGA+TGG | 0.511459 | 2_3:-29164020 | Msa0287170:CDS |
| AAATTTGCCTTTCAAAGGGG+AGG | 0.540297 | 2_3:-29162846 | Msa0287170:CDS |
| CACATCCCATAAACGATCAC+CGG | 0.557346 | 2_3:+29163000 | None:intergenic |
| AAACTGAATGAAGATGTCTC+TGG | 0.559669 | 2_3:+29164163 | None:intergenic |
| AATGAAGATGTCTCTGGCAG+TGG | 0.588255 | 2_3:+29164169 | None:intergenic |
| GGAGTTCATGCAGGTAATGG+TGG | 0.589830 | 2_3:-29164038 | Msa0287170:intron |
| CCAAAATTTGCCTTTCAAAG+GGG | 0.590711 | 2_3:-29162849 | Msa0287170:CDS |
| AACATTCTCATCTTAAGCTG+AGG | 0.591139 | 2_3:+29158936 | None:intergenic |
| GAAAGTTGCCATATTCTAGC+CGG | 0.592261 | 2_3:-29163019 | Msa0287170:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTCAAAAAAATTCAATAA+AGG | + | chr2_3:29159312-29159331 | None:intergenic | 10.0% |
| !!! | GTTTTTTTTAAAAAATAAGT+TGG | + | chr2_3:29161663-29161682 | None:intergenic | 10.0% |
| !! | TATATGAAAACATTATATCA+AGG | + | chr2_3:29159453-29159472 | None:intergenic | 15.0% |
| !! | ACATATTATTATTAATGAAG+TGG | - | chr2_3:29160866-29160885 | Msa0287170:intron | 15.0% |
| !! | ATTAACTGTTATCAAAATAA+TGG | + | chr2_3:29161564-29161583 | None:intergenic | 15.0% |
| !!! | TTTTAAATAGATATGCTTAA+TGG | + | chr2_3:29163799-29163818 | None:intergenic | 15.0% |
| !! | AACAACTTATTTATACAAAA+CGG | + | chr2_3:29163533-29163552 | None:intergenic | 15.0% |
| !!! | TTTCTTTTCTTTTTTGAAAT+GGG | + | chr2_3:29164129-29164148 | None:intergenic | 15.0% |
| !!! | TTTTCTTTTCTTTTTTGAAA+TGG | + | chr2_3:29164130-29164149 | None:intergenic | 15.0% |
| !! | TAAATTAAGTGTATGTAAAA+TGG | + | chr2_3:29164263-29164282 | None:intergenic | 15.0% |
| !! | GACAAATTATATCAGAAAAA+TGG | + | chr2_3:29159524-29159543 | None:intergenic | 20.0% |
| !!! | TTTAATTTAATGCAAGATGA+GGG | + | chr2_3:29159733-29159752 | None:intergenic | 20.0% |
| !!! | GTTGCAATTTTTTATATTGT+CGG | - | chr2_3:29159833-29159852 | Msa0287170:intron | 20.0% |
| !! | ACATGTTTAACAAACAAATT+TGG | + | chr2_3:29159978-29159997 | None:intergenic | 20.0% |
| !! | GATTAACAAGAAACTTAATA+TGG | + | chr2_3:29160099-29160118 | None:intergenic | 20.0% |
| !!! | AATGATAATGATTTATCAAC+CGG | - | chr2_3:29160314-29160333 | Msa0287170:intron | 20.0% |
| !! | TCATTATAAAAACAACAAAG+AGG | + | chr2_3:29160710-29160729 | None:intergenic | 20.0% |
| !! | AACAACTTATTTATACGAAA+CGG | - | chr2_3:29161804-29161823 | Msa0287170:intron | 20.0% |
| !! | AACAGCTTATTTATACAAAA+CGG | - | chr2_3:29161864-29161883 | Msa0287170:intron | 20.0% |
| !! | TTTATGTAAAACAGCTTATT+AGG | - | chr2_3:29161993-29162012 | Msa0287170:intron | 20.0% |
| !! | AACAGCTTATTTATACAAAA+CGG | - | chr2_3:29161864-29161883 | Msa0287170:intron | 20.0% |
| !! | TTTATGCAAAACAACTTATT+AGG | - | chr2_3:29161705-29161724 | Msa0287170:intron | 20.0% |
| !! | TTTATGTAAAACAGCTTATT+AGG | - | chr2_3:29161993-29162012 | Msa0287170:intron | 20.0% |
| !!! | ATAAATAAGCTGTTTTGAAT+AGG | + | chr2_3:29162526-29162545 | None:intergenic | 20.0% |
| !! | TATATTCGAAACAACTTATT+AGG | + | chr2_3:29162481-29162500 | None:intergenic | 20.0% |
| !! | TTTATGCAAAATAGGTTATT+AGG | + | chr2_3:29162804-29162823 | None:intergenic | 20.0% |
| !! | ACAACTTATTTATGCAAAAT+AGG | + | chr2_3:29162285-29162304 | None:intergenic | 20.0% |
| !! | TTTATGCAAAACATCTTATT+AGG | + | chr2_3:29163464-29163483 | None:intergenic | 20.0% |
| !! | TTTATGTAAAACTGCTTATT+AGG | + | chr2_3:29163643-29163662 | None:intergenic | 20.0% |
| !! | AATAGATATGCTTAATAGTT+TGG | - | chr2_3:29163804-29163823 | Msa0287170:intron | 20.0% |
| !! | AAAAGATAATACTCTTCTTT+AGG | - | chr2_3:29164148-29164167 | Msa0287170:CDS | 20.0% |
| !!! | TTCCAATTTTGAAAAGCAAT+CGG | + | chr2_3:29159162-29159181 | None:intergenic | 25.0% |
| ! | AAATTGGAAAATGAGATTGT+AGG | - | chr2_3:29159173-29159192 | Msa0287170:intron | 25.0% |
| ! | TATATCAGAAAAATGGTCAT+AGG | + | chr2_3:29159517-29159536 | None:intergenic | 25.0% |
| !!! | TTTTCTGATATAATTTGTCC+TGG | - | chr2_3:29159525-29159544 | Msa0287170:intron | 25.0% |
| !! | GTTTAATTTAATGCAAGATG+AGG | + | chr2_3:29159734-29159753 | None:intergenic | 25.0% |
| !! | ATTTGTTTGTTAAACATGTC+AGG | - | chr2_3:29159979-29159998 | Msa0287170:intron | 25.0% |
| !!! | AGATTGGCTCTTTTTAATAT+AGG | - | chr2_3:29160671-29160690 | Msa0287170:intron | 25.0% |
| ! | GTTCATAAATAAATGCTCAA+CGG | + | chr2_3:29160744-29160763 | None:intergenic | 25.0% |
| ! | ATTTATTTATGAACTGTGAG+TGG | - | chr2_3:29160750-29160769 | Msa0287170:intron | 25.0% |
| ! | TTTATTTATGAACTGTGAGT+GGG | - | chr2_3:29160751-29160770 | Msa0287170:intron | 25.0% |
| !!! | TGTTCATTTGTTATGAAATC+TGG | - | chr2_3:29160910-29160929 | Msa0287170:intron | 25.0% |
| !! | AGCATCTACATTCATTTTAT+AGG | + | chr2_3:29161117-29161136 | None:intergenic | 25.0% |
| !!! | CAGTTAATTTTGATATGGTT+CGG | + | chr2_3:29161514-29161533 | None:intergenic | 25.0% |
| !!! | TGGTTCAGTTAATTTTGATA+TGG | + | chr2_3:29161519-29161538 | None:intergenic | 25.0% |
| ! | CAGTTCATAAATTTGTGAAA+TGG | + | chr2_3:29161539-29161558 | None:intergenic | 25.0% |
| ! | AATAGATATGCTTAATGGTT+CGG | + | chr2_3:29161635-29161654 | None:intergenic | 25.0% |
| ! | TTTATGCAAAACAGCTTATT+AGG | - | chr2_3:29161753-29161772 | Msa0287170:intron | 25.0% |
| ! | TTTATACAAAACGGCTTATT+AGG | - | chr2_3:29161873-29161892 | Msa0287170:intron | 25.0% |
| ! | TTTATGCAAAACAGCTTATT+AGG | - | chr2_3:29161753-29161772 | Msa0287170:intron | 25.0% |
| ! | TTTATGCAAAACAGCTTATT+AGG | - | chr2_3:29161753-29161772 | Msa0287170:intron | 25.0% |
| ! | TTTATGCAAAACAGCTTATT+AGG | - | chr2_3:29161753-29161772 | Msa0287170:intron | 25.0% |
| ! | TTTATGCAAAATAGCTTATC+AGG | + | chr2_3:29162693-29162712 | None:intergenic | 25.0% |
| ! | TTTATGCAAAACAGCTTATT+AGG | + | chr2_3:29161753-29161772 | None:intergenic | 25.0% |
| ! | TTTATGCAAAACAGCTTATT+AGG | + | chr2_3:29161753-29161772 | None:intergenic | 25.0% |
| ! | TTTATGCAAAACAGCTTATT+AGG | + | chr2_3:29161753-29161772 | None:intergenic | 25.0% |
| ! | ATTATGCAAAACAGCTTATT+AGG | + | chr2_3:29163044-29163063 | None:intergenic | 25.0% |
| ! | TTTATGCAAAACAGCTTATT+AGG | + | chr2_3:29161753-29161772 | None:intergenic | 25.0% |
| ! | TTTATGCAAAACAGCTTATT+AGG | + | chr2_3:29161753-29161772 | None:intergenic | 25.0% |
| ! | TTTATGCAAAACAGCTTATT+AGG | + | chr2_3:29161753-29161772 | None:intergenic | 25.0% |
| ! | TTTATGCAAAACAGCTTATT+AGG | + | chr2_3:29161753-29161772 | None:intergenic | 25.0% |
| ! | TTTATGCAAAACAGCTTATT+AGG | + | chr2_3:29161753-29161772 | None:intergenic | 25.0% |
| ! | TTTATGCAAAACAGCTTATT+AGG | + | chr2_3:29161753-29161772 | None:intergenic | 25.0% |
| ! | TTTATACGAAACAGCTTATT+AGG | + | chr2_3:29163583-29163602 | None:intergenic | 25.0% |
| ! | TTTATGCAAAACAGCTTATT+AGG | + | chr2_3:29161753-29161772 | None:intergenic | 25.0% |
| ! | ATATGCTTAATAGTTTGGTT+CGG | - | chr2_3:29163809-29163828 | Msa0287170:intron | 25.0% |
| ! | GGTTACTTCCAAAATTTAAA+CGG | - | chr2_3:29163885-29163904 | Msa0287170:intron | 25.0% |
| ! | ATACACTTAATTTACAGTAC+TGG | - | chr2_3:29164269-29164288 | Msa0287170:intron | 25.0% |
| !!! | TCTTCATTCAGTTTTGATTG+AGG | - | chr2_3:29159078-29159097 | Msa0287170:intron | 30.0% |
| GTTTGTCTGAAAAGAATATG+TGG | - | chr2_3:29159118-29159137 | Msa0287170:intron | 30.0% | |
| !! | TACCGATTGCTTTTCAAAAT+TGG | - | chr2_3:29159157-29159176 | Msa0287170:intron | 30.0% |
| ATGCAGTGACTCTATAAATT+GGG | - | chr2_3:29159409-29159428 | Msa0287170:intron | 30.0% | |
| !!! | GTCTATGACGTTTTTGTTTT+AGG | + | chr2_3:29159696-29159715 | None:intergenic | 30.0% |
| TAAACATGTCAGGATTAATG+TGG | - | chr2_3:29159989-29160008 | Msa0287170:intron | 30.0% | |
| GGGGACATTGAAAAATTTAT+GGG | + | chr2_3:29160020-29160039 | None:intergenic | 30.0% | |
| AGGGGACATTGAAAAATTTA+TGG | + | chr2_3:29160021-29160040 | None:intergenic | 30.0% | |
| TAAAGGAGAGAATAAGATAG+GGG | + | chr2_3:29160039-29160058 | None:intergenic | 30.0% | |
| GTAAAGGAGAGAATAAGATA+GGG | + | chr2_3:29160040-29160059 | None:intergenic | 30.0% | |
| AGTAAAGGAGAGAATAAGAT+AGG | + | chr2_3:29160041-29160060 | None:intergenic | 30.0% | |
| TAAGTAAACACACTAAGCTA+GGG | + | chr2_3:29160065-29160084 | None:intergenic | 30.0% | |
| TTAAGTAAACACACTAAGCT+AGG | + | chr2_3:29160066-29160085 | None:intergenic | 30.0% | |
| !! | AACTTTCCTTTACTGACTTT+GGG | + | chr2_3:29160200-29160219 | None:intergenic | 30.0% |
| TACCAAAATTTGCCTTTCAA+AGG | - | chr2_3:29160381-29160400 | Msa0287170:intron | 30.0% | |
| ACCAAAATTTGCCTTTCAAA+GGG | - | chr2_3:29160382-29160401 | Msa0287170:intron | 30.0% | |
| CTTGAAGAAAAAATGCAGTA+TGG | + | chr2_3:29160465-29160484 | None:intergenic | 30.0% | |
| !!! | GCATTTTTTCTTCAAGTATC+AGG | - | chr2_3:29160469-29160488 | Msa0287170:intron | 30.0% |
| TTAAAAAGAGCCAATCTAAC+CGG | + | chr2_3:29160668-29160687 | None:intergenic | 30.0% | |
| !! | TAGTTATGCTGAGTCATTTT+TGG | - | chr2_3:29160826-29160845 | Msa0287170:intron | 30.0% |
| !! | TCATTTGTTATGAAATCTGG+AGG | - | chr2_3:29160913-29160932 | Msa0287170:intron | 30.0% |
| TAGAAATAAGAGATGTTCTG+AGG | - | chr2_3:29160938-29160957 | Msa0287170:intron | 30.0% | |
| AGAAATAAGAGATGTTCTGA+GGG | - | chr2_3:29160939-29160958 | Msa0287170:intron | 30.0% | |
| !! | CTATAAAAGTGCTATCAAAG+CGG | - | chr2_3:29160989-29161008 | Msa0287170:intron | 30.0% |
| TTTCCAAGTAAACTGATACA+AGG | + | chr2_3:29161366-29161385 | None:intergenic | 30.0% | |
| TTACTTTCACTCATGTTAGA+AGG | - | chr2_3:29161431-29161450 | Msa0287170:intron | 30.0% | |
| TACTTTCACTCATGTTAGAA+GGG | - | chr2_3:29161432-29161451 | Msa0287170:intron | 30.0% | |
| !!! | AATTTTGATATGGTTCGGTT+CGG | + | chr2_3:29161509-29161528 | None:intergenic | 30.0% |
| AACTGTGGTTATTAATGGTT+CGG | + | chr2_3:29161595-29161614 | None:intergenic | 30.0% | |
| TGGATAACTGTGGTTATTAA+TGG | + | chr2_3:29161600-29161619 | None:intergenic | 30.0% | |
| ! | TTTGTGCAAAACAGCTTTTT+AGG | + | chr2_3:29162571-29162590 | None:intergenic | 30.0% |
| !! | AGCTGTTTTGCATAAATAAG+CGG | - | chr2_3:29162637-29162656 | Msa0287170:intron | 30.0% |
| CTTCCAAAATTTAAACGGTT+CGG | - | chr2_3:29163890-29163909 | Msa0287170:intron | 30.0% | |
| !! | AAAATTTAAACGGTTCGGTT+CGG | - | chr2_3:29163895-29163914 | Msa0287170:intron | 30.0% |
| !! | GAATTGCAAGAAAGAGTATT+TGG | + | chr2_3:29164019-29164038 | None:intergenic | 30.0% |
| TTCTTGCAATTCAGAATGTT+TGG | - | chr2_3:29164027-29164046 | Msa0287170:CDS | 30.0% | |
| TCTTGCAATTCAGAATGTTT+GGG | - | chr2_3:29164028-29164047 | Msa0287170:CDS | 30.0% | |
| !!! | GGTTGTATCTTTTGACTTAT+TGG | - | chr2_3:29164079-29164098 | Msa0287170:intron | 30.0% |
| !!! | TTTTGACTTATTGGCGAATT+CGG | - | chr2_3:29164088-29164107 | Msa0287170:intron | 30.0% |
| AAACTGAATGAAGATGTCTC+TGG | + | chr2_3:29159072-29159091 | None:intergenic | 35.0% | |
| GAATATGTGGAAAAGACAAC+TGG | - | chr2_3:29159131-29159150 | Msa0287170:intron | 35.0% | |
| ! | TGAGATTGTTTTCAGTGTCA+AGG | - | chr2_3:29159274-29159293 | Msa0287170:intron | 35.0% |
| ! | ATTCAATAAAGGCATACCCA+CGG | + | chr2_3:29159301-29159320 | None:intergenic | 35.0% |
| GATGCAGTGACTCTATAAAT+TGG | - | chr2_3:29159408-29159427 | Msa0287170:intron | 35.0% | |
| ATTTGCAGAGTTGAAGCATA+TGG | + | chr2_3:29159791-29159810 | None:intergenic | 35.0% | |
| ATCTTTGTTGAAGTGTAACC+TGG | - | chr2_3:29160116-29160135 | Msa0287170:intron | 35.0% | |
| ! | AGATACTTGACTTGAAACCA+TGG | - | chr2_3:29160162-29160181 | Msa0287170:intron | 35.0% |
| !! | CAACTTTCCTTTACTGACTT+TGG | + | chr2_3:29160201-29160220 | None:intergenic | 35.0% |
| CTCACAAATGAATCCTTCTT+TGG | - | chr2_3:29160282-29160301 | Msa0287170:intron | 35.0% | |
| ! | CATTTTACTAACGCCAAAGA+AGG | + | chr2_3:29160298-29160317 | None:intergenic | 35.0% |
| AATGATTTATCAACCGGACT+AGG | - | chr2_3:29160320-29160339 | Msa0287170:intron | 35.0% | |
| CCAAAATTTGCCTTTCAAAG+GGG | - | chr2_3:29160383-29160402 | Msa0287170:intron | 35.0% | |
| !! | TGTATCACTTTCTGAAGCAT+AGG | - | chr2_3:29160516-29160535 | Msa0287170:intron | 35.0% |
| TATCCTACATGATCGAATTC+CGG | - | chr2_3:29160646-29160665 | Msa0287170:intron | 35.0% | |
| !!! | ATGCTGAGTCATTTTTGGAT+TGG | - | chr2_3:29160831-29160850 | Msa0287170:intron | 35.0% |
| !!! | TGAGTCATTTTTGGATTGGT+TGG | - | chr2_3:29160835-29160854 | Msa0287170:intron | 35.0% |
| ! | CTGATATTTGAAGCTGGTAT+TGG | + | chr2_3:29161071-29161090 | None:intergenic | 35.0% |
| TACCAGCTTCAAATATCAGA+TGG | - | chr2_3:29161072-29161091 | Msa0287170:intron | 35.0% | |
| AAAATGAATGTAGATGCTGC+AGG | - | chr2_3:29161119-29161138 | Msa0287170:intron | 35.0% | |
| !! | TGGTTATTAATGGTTCGGTT+CGG | + | chr2_3:29161590-29161609 | None:intergenic | 35.0% |
| !! | ATATGCTTAATGGTTCGGTT+CGG | + | chr2_3:29161630-29161649 | None:intergenic | 35.0% |
| !! | CTTAATAGTTTGGTTCGGTT+CGG | - | chr2_3:29163814-29163833 | Msa0287170:intron | 35.0% |
| ! | GAACCGAACCGTTTAAATTT+TGG | + | chr2_3:29163896-29163915 | None:intergenic | 35.0% |
| TCCGAATCATTTCACCAATT+CGG | - | chr2_3:29163922-29163941 | Msa0287170:intron | 35.0% | |
| ACCGAATTGGTGAAATGATT+CGG | + | chr2_3:29163926-29163945 | None:intergenic | 35.0% | |
| ATCATTTCACCAATTCGGTT+CGG | - | chr2_3:29163927-29163946 | Msa0287170:intron | 35.0% | |
| ! | CTCTTCTTTAGGAATGTCTA+CGG | - | chr2_3:29164159-29164178 | Msa0287170:CDS | 35.0% |
| AGAACCCATGAAAAACTGAA+GGG | + | chr2_3:29164237-29164256 | None:intergenic | 35.0% | |
| TAGAACCCATGAAAAACTGA+AGG | + | chr2_3:29164238-29164257 | None:intergenic | 35.0% | |
| AACATTCTCATCTTAAGCTG+AGG | + | chr2_3:29164299-29164318 | None:intergenic | 35.0% | |
| !!! | GTAGCAAATGGTTTTGGATC+AGG | + | chr2_3:29158946-29158965 | None:intergenic | 40.0% |
| TCCATCTTCTTAGAGTGTGA+TGG | - | chr2_3:29159018-29159037 | Msa0287170:intron | 40.0% | |
| !!! | TTCAGTTTTGATTGAGGCGA+TGG | - | chr2_3:29159084-29159103 | Msa0287170:intron | 40.0% |
| CTGAATTCAGCACAAAAACC+AGG | + | chr2_3:29159546-29159565 | None:intergenic | 40.0% | |
| ACACACGCAGACATTTGTAT+GGG | + | chr2_3:29159597-29159616 | None:intergenic | 40.0% | |
| CACTCTGTCAGAACAATGTT+TGG | - | chr2_3:29159662-29159681 | Msa0287170:intron | 40.0% | |
| CAAGATGAGGGTCTCTATAT+GGG | + | chr2_3:29159721-29159740 | None:intergenic | 40.0% | |
| ATTAAACATGTTCTGCCCCT+TGG | - | chr2_3:29159747-29159766 | Msa0287170:intron | 40.0% | |
| ! | ATATAGCGTTTGAGACCAAG+GGG | + | chr2_3:29159765-29159784 | None:intergenic | 40.0% |
| ! | GATATAGCGTTTGAGACCAA+GGG | + | chr2_3:29159766-29159785 | None:intergenic | 40.0% |
| ! | AGATATAGCGTTTGAGACCA+AGG | + | chr2_3:29159767-29159786 | None:intergenic | 40.0% |
| TTCAACTCTGCAAATTGCAG+AGG | - | chr2_3:29159796-29159815 | Msa0287170:intron | 40.0% | |
| CAAGTCAAGTATCTATCTCC+TGG | + | chr2_3:29160156-29160175 | None:intergenic | 40.0% | |
| !! | TTGGGTAGTGGAATTATCCA+TGG | + | chr2_3:29160182-29160201 | None:intergenic | 40.0% |
| GAAAGTTGCCATATTCTAGC+CGG | - | chr2_3:29160213-29160232 | Msa0287170:intron | 40.0% | |
| ATCAACTACATTGCCTAGTC+CGG | + | chr2_3:29160336-29160355 | None:intergenic | 40.0% | |
| !! | CCCCTTTGAAAGGCAAATTT+TGG | + | chr2_3:29160386-29160405 | None:intergenic | 40.0% |
| AAATTTGCCTTTCAAAGGGG+AGG | - | chr2_3:29160386-29160405 | Msa0287170:intron | 40.0% | |
| AGGCAAAGATATGGACTTGA+AGG | - | chr2_3:29160406-29160425 | Msa0287170:intron | 40.0% | |
| TAACCGGAATTCGATCATGT+AGG | + | chr2_3:29160652-29160671 | None:intergenic | 40.0% | |
| TGATCGAATTCCGGTTAGAT+TGG | - | chr2_3:29160655-29160674 | Msa0287170:intron | 40.0% | |
| ! | CACCATCTGATATTTGAAGC+TGG | + | chr2_3:29161077-29161096 | None:intergenic | 40.0% |
| !! | TCCATCCGATGATGGAAAAT+GGG | - | chr2_3:29161142-29161161 | Msa0287170:intron | 40.0% |
| ! | AAGACCCCATTTTCCATCAT+CGG | + | chr2_3:29161150-29161169 | None:intergenic | 40.0% |
| GTGGTAATAAGAGACGTTCA+AGG | - | chr2_3:29161173-29161192 | Msa0287170:intron | 40.0% | |
| AGAAGCAATGGCAATGTTGA+AGG | - | chr2_3:29161253-29161272 | Msa0287170:intron | 40.0% | |
| GAAGCAATGGCAATGTTGAA+GGG | - | chr2_3:29161254-29161273 | Msa0287170:intron | 40.0% | |
| GCACCTTGTATCAGTTTACT+TGG | - | chr2_3:29161360-29161379 | Msa0287170:intron | 40.0% | |
| TTTCACTCATGTTAGAAGGG+TGG | - | chr2_3:29161435-29161454 | Msa0287170:intron | 40.0% | |
| ATAGGGCTGGGCAAAATTAA+CGG | - | chr2_3:29161461-29161480 | Msa0287170:intron | 40.0% | |
| !! | TTTGGTTCGGTTCGGTTAAT+AGG | - | chr2_3:29163822-29163841 | Msa0287170:intron | 40.0% |
| TCGGTTAATAGGCAAGCAAA+CGG | - | chr2_3:29163833-29163852 | Msa0287170:intron | 40.0% | |
| GGTTAACCGAACCATAACTT+TGG | - | chr2_3:29163854-29163873 | Msa0287170:intron | 40.0% | |
| ACCGAACCATAACTTTGGTT+CGG | - | chr2_3:29163859-29163878 | Msa0287170:intron | 40.0% | |
| ACCGAACCAAAGTTATGGTT+CGG | + | chr2_3:29163863-29163882 | None:intergenic | 40.0% | |
| !! | ACCATAACTTTGGTTCGGTT+CGG | - | chr2_3:29163864-29163883 | Msa0287170:intron | 40.0% |
| GAATCAAGCTGCTCATTACT+TGG | - | chr2_3:29163993-29164012 | Msa0287170:CDS | 40.0% | |
| ! | GACTCCATCTTGTATTTCTG+CGG | - | chr2_3:29164058-29164077 | Msa0287170:intron | 40.0% |
| ACAACCGCAGAAATACAAGA+TGG | + | chr2_3:29164065-29164084 | None:intergenic | 40.0% | |
| ! | TTCTGCCCTTCAGTTTTTCA+TGG | - | chr2_3:29164229-29164248 | Msa0287170:intron | 40.0% |
| ! | TCTGCCCTTCAGTTTTTCAT+GGG | - | chr2_3:29164230-29164249 | Msa0287170:intron | 40.0% |
| ! | CTGCAGGTAGCAAATGGTTT+TGG | + | chr2_3:29158952-29158971 | None:intergenic | 45.0% |
| CATGAACTGCAGGTAGCAAA+TGG | + | chr2_3:29158958-29158977 | None:intergenic | 45.0% | |
| TCTGACATCTCATGAACTGC+AGG | + | chr2_3:29158968-29158987 | None:intergenic | 45.0% | |
| ! | GCCATCACACTCTAAGAAGA+TGG | + | chr2_3:29159022-29159041 | None:intergenic | 45.0% |
| AATGAAGATGTCTCTGGCAG+TGG | + | chr2_3:29159066-29159085 | None:intergenic | 45.0% | |
| GAGATTGTAGGAGTTCATGC+AGG | - | chr2_3:29159185-29159204 | Msa0287170:intron | 45.0% | |
| GTAGGAGTTCATGCAGGTAA+TGG | - | chr2_3:29159191-29159210 | Msa0287170:intron | 45.0% | |
| GGTGGAAGACACAGTAATGA+TGG | - | chr2_3:29159212-29159231 | Msa0287170:intron | 45.0% | |
| ! | TTTTCAGTGTCAAGGTCCGT+GGG | - | chr2_3:29159282-29159301 | Msa0287170:intron | 45.0% |
| CACACGCAGACATTTGTATG+GGG | + | chr2_3:29159596-29159615 | None:intergenic | 45.0% | |
| CACACACGCAGACATTTGTA+TGG | + | chr2_3:29159598-29159617 | None:intergenic | 45.0% | |
| GCAAGATGAGGGTCTCTATA+TGG | + | chr2_3:29159722-29159741 | None:intergenic | 45.0% | |
| ACACTAAGCTAGGGCAGTAA+AGG | + | chr2_3:29160056-29160075 | None:intergenic | 45.0% | |
| AAGTATCTATCTCCTGGTGG+TGG | + | chr2_3:29160150-29160169 | None:intergenic | 45.0% | |
| GTCAAGTATCTATCTCCTGG+TGG | + | chr2_3:29160153-29160172 | None:intergenic | 45.0% | |
| !! | CCTTTACTGACTTTGGGTAG+TGG | + | chr2_3:29160194-29160213 | None:intergenic | 45.0% |
| CCACTACCCAAAGTCAGTAA+AGG | - | chr2_3:29160191-29160210 | Msa0287170:intron | 45.0% | |
| ! | AACGATCACCGGCTAGAATA+TGG | + | chr2_3:29160224-29160243 | None:intergenic | 45.0% |
| TTCTAGCCGGTGATCGTTTA+TGG | - | chr2_3:29160226-29160245 | Msa0287170:intron | 45.0% | |
| TCTAGCCGGTGATCGTTTAT+GGG | - | chr2_3:29160227-29160246 | Msa0287170:intron | 45.0% | |
| CACATCCCATAAACGATCAC+CGG | + | chr2_3:29160235-29160254 | None:intergenic | 45.0% | |
| ATCTTTGCCTCCCCTTTGAA+AGG | + | chr2_3:29160396-29160415 | None:intergenic | 45.0% | |
| TCAAAGGGGAGGCAAAGATA+TGG | - | chr2_3:29160397-29160416 | Msa0287170:intron | 45.0% | |
| TTGGCTGTGTTGCAGCATAA+TGG | + | chr2_3:29160567-29160586 | None:intergenic | 45.0% | |
| !! | GGTCTAAGCTCTGGAAATTG+CGG | - | chr2_3:29160591-29160610 | Msa0287170:intron | 45.0% |
| CACATCAGATGCACATGCTT+TGG | + | chr2_3:29160623-29160642 | None:intergenic | 45.0% | |
| CAAAGCATGTGCATCTGATG+TGG | - | chr2_3:29160621-29160640 | Msa0287170:intron | 45.0% | |
| ! | GTGTGGCTTGCATCTCATTT+AGG | - | chr2_3:29160782-29160801 | Msa0287170:intron | 45.0% |
| ! | AAGCTGGTATTGGAACTGAC+TGG | + | chr2_3:29161061-29161080 | None:intergenic | 45.0% |
| ! | ATTTTATAGGAGCCCGCAGA+CGG | + | chr2_3:29161104-29161123 | None:intergenic | 45.0% |
| !! | GTCCATCCGATGATGGAAAA+TGG | - | chr2_3:29161141-29161160 | Msa0287170:intron | 45.0% |
| !! | CCATCCGATGATGGAAAATG+GGG | - | chr2_3:29161143-29161162 | Msa0287170:intron | 45.0% |
| !! | CAAGGTTTTGTGTCAGCAAC+AGG | - | chr2_3:29161191-29161210 | Msa0287170:intron | 45.0% |
| TTGTGTCAGCAACAGGTTGT+TGG | - | chr2_3:29161198-29161217 | Msa0287170:intron | 45.0% | |
| ACGTCTGAATTGGGTAGGAT+TGG | + | chr2_3:29161230-29161249 | None:intergenic | 45.0% | |
| GAAGGGTCGCAAATTTGCAA+AGG | - | chr2_3:29161271-29161290 | Msa0287170:intron | 45.0% | |
| ATGTTAGAAGGGTGGCGAAT+AGG | - | chr2_3:29161443-29161462 | Msa0287170:intron | 45.0% | |
| TGTTAGAAGGGTGGCGAATA+GGG | - | chr2_3:29161444-29161463 | Msa0287170:intron | 45.0% | |
| !! | TATGGTTCGGTTCGGTTAAC+CGG | + | chr2_3:29161501-29161520 | None:intergenic | 45.0% |
| !! | CTTAATGGTTCGGTTCGGTT+CGG | + | chr2_3:29161625-29161644 | None:intergenic | 45.0% |
| ACCGAACCGAACCAAAGTTA+TGG | + | chr2_3:29163868-29163887 | None:intergenic | 45.0% | |
| !! | TTCACCAATTCGGTTCGGTT+CGG | - | chr2_3:29163932-29163951 | Msa0287170:intron | 45.0% |
| TTAACCGAACCGAACCGAAT+TGG | + | chr2_3:29163939-29163958 | None:intergenic | 45.0% | |
| !! | TCGGTTCGGTTCGGTTAATA+TGG | - | chr2_3:29163941-29163960 | Msa0287170:intron | 45.0% |
| !!! | TTATTTTTTAAAAAATAAGT+TGG | - | chr2_3:29163776-29163795 | Msa0287170:intron | 5.0% |
| ! | GGAGTTCATGCAGGTAATGG+TGG | - | chr2_3:29159194-29159213 | Msa0287170:intron | 50.0% |
| ! | GTTTTCAGTGTCAAGGTCCG+TGG | - | chr2_3:29159281-29159300 | Msa0287170:intron | 50.0% |
| CGCAGACATTTGTATGGGGT+TGG | + | chr2_3:29159592-29159611 | None:intergenic | 50.0% | |
| TCCAGAGCTTAGACCAGACT+TGG | + | chr2_3:29160586-29160605 | None:intergenic | 50.0% | |
| AGTGGCTGATGTGAGTCAAG+TGG | - | chr2_3:29160884-29160903 | Msa0287170:intron | 50.0% | |
| ! | TTTTATAGGAGCCCGCAGAC+GGG | + | chr2_3:29161103-29161122 | None:intergenic | 50.0% |
| ! | CCCCATTTTCCATCATCGGA+TGG | + | chr2_3:29161146-29161165 | None:intergenic | 50.0% |
| TGGAAAATGGGGTCTTGCTG+TGG | - | chr2_3:29161154-29161173 | Msa0287170:intron | 50.0% | |
| GCTTCTGCGACGTCTGAATT+GGG | + | chr2_3:29161239-29161258 | None:intergenic | 50.0% | |
| TGCTTCTGCGACGTCTGAAT+TGG | + | chr2_3:29161240-29161259 | None:intergenic | 50.0% | |
| TTCAGACGTCGCAGAAGCAA+TGG | - | chr2_3:29161241-29161260 | Msa0287170:intron | 50.0% | |
| AACGGTTAACCGAACCGAAC+CGG | - | chr2_3:29161479-29161498 | Msa0287170:intron | 50.0% | |
| !! | TTCGGTTAACCGGTTCGGTT+CGG | + | chr2_3:29161491-29161510 | None:intergenic | 50.0% |
| !! | TTCGGTTCGGTTAACCGGTT+CGG | + | chr2_3:29161496-29161515 | None:intergenic | 50.0% |
| !! | CGGTTCGGTTTGGATAACTG+TGG | + | chr2_3:29161610-29161629 | None:intergenic | 50.0% |
| ! | AGCAGCTTGATTCGCCACTA+GGG | + | chr2_3:29163986-29164005 | None:intergenic | 50.0% |
| !! | CTGGTGGTGGACAAGAAACC+AGG | + | chr2_3:29160137-29160156 | None:intergenic | 55.0% |
| CTGGTTTCTTGTCCACCACC+AGG | - | chr2_3:29160135-29160154 | Msa0287170:intron | 55.0% | |
| TGCTGCAACACAGCCAAGTC+TGG | - | chr2_3:29160570-29160589 | Msa0287170:intron | 55.0% | |
| GCCAAGTCTGGTCTAAGCTC+TGG | - | chr2_3:29160582-29160601 | Msa0287170:intron | 55.0% | |
| GTGAGTGGGTGAGATCTGTG+TGG | - | chr2_3:29160765-29160784 | Msa0287170:intron | 55.0% | |
| CTGCGACGTCTGAATTGGGT+AGG | + | chr2_3:29161235-29161254 | None:intergenic | 55.0% | |
| !! | TGGTTCGGTTCGGTTCGGTT+TGG | + | chr2_3:29161620-29161639 | None:intergenic | 55.0% |
| ! | CTTGATTCGCCACTAGGGCT+GGG | + | chr2_3:29163981-29164000 | None:intergenic | 55.0% |
| ! | GAGCAGCTTGATTCGCCACT+AGG | + | chr2_3:29163987-29164006 | None:intergenic | 55.0% |
| CAGATGGTGTCTCCCGTCTG+CGG | - | chr2_3:29161088-29161107 | Msa0287170:intron | 60.0% | |
| AGATGGTGTCTCCCGTCTGC+GGG | - | chr2_3:29161089-29161108 | Msa0287170:intron | 60.0% | |
| GCTGCAGGTCCATCCGATGA+TGG | - | chr2_3:29161134-29161153 | Msa0287170:intron | 60.0% | |
| AGAAGGGTGGCGAATAGGGC+TGG | - | chr2_3:29161448-29161467 | Msa0287170:intron | 60.0% | |
| GAAGGGTGGCGAATAGGGCT+GGG | - | chr2_3:29161449-29161468 | Msa0287170:intron | 60.0% | |
| CACTAGGGCTGGGCATGGTT+CGG | + | chr2_3:29163971-29163990 | None:intergenic | 60.0% | |
| ! | GCTTGATTCGCCACTAGGGC+TGG | + | chr2_3:29163982-29164001 | None:intergenic | 60.0% |
| CGAACCATGCCCAGCCCTAG+TGG | - | chr2_3:29163969-29163988 | Msa0287170:intron | 65.0% | |
| TTCGCCACTAGGGCTGGGCA+TGG | + | chr2_3:29163976-29163995 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 29158923 | 29164331 | 29158923 | ID=Msa0287170;Name=Msa0287170 |
| chr2_3 | mRNA | 29158923 | 29164331 | 29158923 | ID=Msa0287170-mRNA-1;Parent=Msa0287170;Name=Msa0287170-mRNA-1;_AED=0.43;_eAED=0.69;_QI=0|0|0|1|0.33|0.28|7|0|158 |
| chr2_3 | exon | 29164326 | 29164331 | 29164326 | ID=Msa0287170-mRNA-1:exon:10286;Parent=Msa0287170-mRNA-1 |
| chr2_3 | exon | 29164137 | 29164223 | 29164137 | ID=Msa0287170-mRNA-1:exon:10285;Parent=Msa0287170-mRNA-1 |
| chr2_3 | exon | 29163988 | 29164047 | 29163988 | ID=Msa0287170-mRNA-1:exon:10284;Parent=Msa0287170-mRNA-1 |
| chr2_3 | exon | 29163959 | 29163965 | 29163959 | ID=Msa0287170-mRNA-1:exon:10283;Parent=Msa0287170-mRNA-1 |
| chr2_3 | exon | 29162949 | 29163046 | 29162949 | ID=Msa0287170-mRNA-1:exon:10282;Parent=Msa0287170-mRNA-1 |
| chr2_3 | exon | 29162771 | 29162878 | 29162771 | ID=Msa0287170-mRNA-1:exon:10281;Parent=Msa0287170-mRNA-1 |
| chr2_3 | exon | 29158923 | 29159033 | 29158923 | ID=Msa0287170-mRNA-1:exon:10280;Parent=Msa0287170-mRNA-1 |
| chr2_3 | CDS | 29164326 | 29164331 | 29164326 | ID=Msa0287170-mRNA-1:cds;Parent=Msa0287170-mRNA-1 |
| chr2_3 | CDS | 29164137 | 29164223 | 29164137 | ID=Msa0287170-mRNA-1:cds;Parent=Msa0287170-mRNA-1 |
| chr2_3 | CDS | 29163988 | 29164047 | 29163988 | ID=Msa0287170-mRNA-1:cds;Parent=Msa0287170-mRNA-1 |
| chr2_3 | CDS | 29163959 | 29163965 | 29163959 | ID=Msa0287170-mRNA-1:cds;Parent=Msa0287170-mRNA-1 |
| chr2_3 | CDS | 29162949 | 29163046 | 29162949 | ID=Msa0287170-mRNA-1:cds;Parent=Msa0287170-mRNA-1 |
| chr2_3 | CDS | 29162771 | 29162878 | 29162771 | ID=Msa0287170-mRNA-1:cds;Parent=Msa0287170-mRNA-1 |
| chr2_3 | CDS | 29158923 | 29159033 | 29158923 | ID=Msa0287170-mRNA-1:cds;Parent=Msa0287170-mRNA-1 |
| Gene Sequence |
| Protein sequence |
