AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0017300


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0017300 MtrunA17_Chr1g0169361 97.535 284 5 1 22 303 501 784 0.0 547
Msa0017300 MtrunA17_Chr6g0465161 31.290 310 143 12 23 303 442 710 6.23e-29 116
Msa0017300 MtrunA17_Chr7g0230671 28.636 220 122 6 22 227 461 659 7.49e-18 84.0
Msa0017300 MtrunA17_Chr4g0012061 27.562 283 149 9 22 298 473 705 1.12e-17 83.6
Msa0017300 MtrunA17_Chr3g0136721 30.409 171 106 2 26 196 469 626 3.50e-17 82.0
Msa0017300 MtrunA17_Chr1g0148121 38.235 102 55 2 22 123 453 546 3.10e-15 76.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0017300 AT3G24190.1 75.088 285 68 2 22 303 509 793 6.26e-145 427
Msa0017300 AT1G71810.1 29.642 307 143 10 23 303 433 692 8.29e-26 107
Msa0017300 AT1G79600.1 44.444 90 49 1 22 111 468 556 3.50e-18 85.5
Msa0017300 AT5G24970.3 31.677 161 98 2 28 188 480 628 2.31e-17 82.8
Msa0017300 AT5G24970.1 31.677 161 98 2 28 188 477 625 2.32e-17 82.8
Msa0017300 AT5G24970.2 31.677 161 98 2 28 188 519 667 2.61e-17 82.8
Msa0017300 AT4G31390.2 33.333 111 73 1 22 132 464 573 4.44e-15 75.9
Msa0017300 AT4G31390.1 33.333 111 73 1 22 132 489 598 5.19e-15 75.9
Msa0017300 AT4G31390.3 33.333 111 73 1 22 132 290 399 5.91e-15 75.5
Msa0017300 AT2G39190.2 35.000 80 52 0 26 105 539 618 2.16e-13 70.9

Find 96 sgRNAs with CRISPR-Local

Find 210 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATACTTTGCCCTTATAATT+AGG 0.089687 1_1:+28667050 Msa0017300:CDS
GCTTTACGTTACACTATATA+TGG 0.194317 1_1:+28667799 Msa0017300:CDS
TCAAGAACTCCAGCACTTTC+TGG 0.201641 1_1:-28669013 None:intergenic
CCCCGATAGCCCTAATTATA+AGG 0.235389 1_1:-28667060 None:intergenic
ATACTTTGCCCTTATAATTA+GGG 0.262467 1_1:+28667051 Msa0017300:CDS
GATTAATGAACAAGGGTAAA+TGG 0.271358 1_1:-28669447 None:intergenic
AATTAGGGCTATCGGGGTTT+TGG 0.280919 1_1:+28667066 Msa0017300:CDS
TATATTATATTTATATATAC+TGG 0.288472 1_1:-28669423 None:intergenic
AATAGCCAGCATAATTGATT+TGG 0.293002 1_1:-28669523 None:intergenic
GTAGGTACCATACCGAAAAT+AGG 0.294048 1_1:-28668918 None:intergenic
AATTATACCTGTGCAATATA+TGG 0.302271 1_1:-28667142 None:intergenic
AGAACTTCTGCCAGTGTTGC+CGG 0.306484 1_1:+28669242 Msa0017300:CDS
AACTTTATCCTCTTCGGTTA+TGG 0.312758 1_1:-28668976 None:intergenic
CCCTTATAATTAGGGCTATC+GGG 0.332300 1_1:+28667059 Msa0017300:CDS
TTCTTAGCAGATTATCTTCT+CGG 0.345784 1_1:+28669292 Msa0017300:CDS
CTAATTATAAGGGCAAAGTA+TGG 0.349214 1_1:-28667049 None:intergenic
TGTGGGTGGATTAAGCATTA+AGG 0.366442 1_1:-28669364 None:intergenic
CAGTATAACTTTATCCTCTT+CGG 0.369075 1_1:-28668982 None:intergenic
GCCCTTATAATTAGGGCTAT+CGG 0.378622 1_1:+28667058 Msa0017300:CDS
CCGGTCAGAATATCTCTTGC+CGG 0.382765 1_1:+28667954 Msa0017300:CDS
TACACTATATATGGGAAATC+TGG 0.386187 1_1:+28667808 Msa0017300:CDS
GCAACACTGGCAGAAGTTCT+TGG 0.389343 1_1:-28669239 None:intergenic
TTGGAAGGGATAGCTTTAGT+AGG 0.425825 1_1:+28667085 Msa0017300:CDS
AGCTTGGGCTTATTACTAAC+CGG 0.433633 1_1:+28667935 Msa0017300:CDS
CCCGATAGCCCTAATTATAA+GGG 0.441218 1_1:-28667059 None:intergenic
GATAATCTGCTAAGAACATC+AGG 0.444598 1_1:-28669285 None:intergenic
GCCCGTGTTTCCACTGGCTG+CGG 0.444691 1_1:-28668003 None:intergenic
TCATCAACAATGGCAAAATC+AGG 0.448007 1_1:-28667112 None:intergenic
AGAGGATCTGAAAGGGAGTA+TGG 0.453042 1_1:+28667909 Msa0017300:CDS
GAGGTGGAGAGGATCTGAAA+GGG 0.458984 1_1:+28667902 Msa0017300:intron
TCTGTCAAGCACATCTAGTC+AGG 0.463598 1_1:+28669049 Msa0017300:CDS
ATTGTGTATATTTGACAGAA+TGG 0.465438 1_1:+28669387 Msa0017300:three_prime_UTR
TCTGATCATGATCATGATCA+TGG 0.465952 1_1:+28666346 Msa0017300:CDS
CTTTACGTTACACTATATAT+GGG 0.466517 1_1:+28667800 Msa0017300:CDS
CCTCGTCCAAAAGAAATTCT+CGG 0.466532 1_1:-28668065 None:intergenic
TTTATCCTCTTCGGTTATGG+TGG 0.473199 1_1:-28668973 None:intergenic
AGGGCTGCCCGTGTTTCCAC+TGG 0.474496 1_1:-28668009 None:intergenic
TATTTATATATACTGGTATG+TGG 0.478038 1_1:-28669416 None:intergenic
TTCGGTATGGTACCTACCAT+TGG 0.478269 1_1:+28668924 Msa0017300:CDS
TACCATTTGTTCCCTTGTCA+CGG 0.478757 1_1:-28668859 None:intergenic
TGCCGTGACAAGGGAACAAA+TGG 0.489394 1_1:+28668857 Msa0017300:CDS
TGCATTCTGAACTCCTAGTA+AGG 0.499806 1_1:-28668892 None:intergenic
GTAAGAATTATGTCCTTACT+AGG 0.500477 1_1:+28668879 Msa0017300:CDS
AAAGGGAGTATGGCTGAGCT+TGG 0.501167 1_1:+28667919 Msa0017300:CDS
TAGGTACCATACCGAAAATA+GGG 0.501824 1_1:-28668917 None:intergenic
TCTTAGCAGATTATCTTCTC+GGG 0.503708 1_1:+28669293 Msa0017300:CDS
TAATTATAAGGGCAAAGTAT+GGG 0.504028 1_1:-28667048 None:intergenic
GCAGAGATGCCCGGCAACAC+TGG 0.505198 1_1:-28669252 None:intergenic
CGGTCAGAATATCTCTTGCC+GGG 0.507660 1_1:+28667955 Msa0017300:CDS
GTGCTGGAGTTCTTGACTGC+AGG 0.510421 1_1:+28669020 Msa0017300:CDS
GGAGGTGGAGAGGATCTGAA+AGG 0.512007 1_1:+28667901 Msa0017300:intron
AACCGCAGCCAGTGGAAACA+CGG 0.515912 1_1:+28668001 Msa0017300:CDS
ATAAGCCAAATCAATTATGC+TGG 0.516259 1_1:+28669518 Msa0017300:three_prime_UTR
TGTCAAATATACACAATTGT+GGG 0.517727 1_1:-28669381 None:intergenic
TTACTGATAGAGACTCTTGA+CGG 0.519048 1_1:+28667753 Msa0017300:intron
GAACTTCTGCCAGTGTTGCC+GGG 0.520134 1_1:+28669243 Msa0017300:CDS
CTGTCAAATATACACAATTG+TGG 0.521036 1_1:-28669382 None:intergenic
GATGTTACAGACTGGAATCC+CGG 0.531571 1_1:-28667973 None:intergenic
CGGATGAATCCCCTCGGCTA+AGG 0.532282 1_1:+28667773 Msa0017300:CDS
TTATCCTCTTCGGTTATGGT+GGG 0.540872 1_1:-28668972 None:intergenic
AAGGGAGTATGGCTGAGCTT+GGG 0.543384 1_1:+28667920 Msa0017300:CDS
TGACTCATGCAGATTGTCAA+GGG 0.543901 1_1:+28668828 Msa0017300:intron
AATTATAAGGGCAAAGTATG+GGG 0.557155 1_1:-28667047 None:intergenic
ACCGCAGCCAGTGGAAACAC+GGG 0.564302 1_1:+28668002 Msa0017300:CDS
TTGACTCATGCAGATTGTCA+AGG 0.567338 1_1:+28668827 Msa0017300:intron
CCTTATAATTAGGGCTATCG+GGG 0.576502 1_1:+28667060 Msa0017300:CDS
GAACAATGTCCAGAAAGTGC+TGG 0.577732 1_1:+28669004 Msa0017300:CDS
AGGGCATTGATGCCGTGACA+AGG 0.579388 1_1:+28668847 Msa0017300:CDS
AGCCTATCCATATATTGCAC+AGG 0.579392 1_1:+28667135 Msa0017300:CDS
TGCCAAAAGTGGAGGTGGAG+AGG 0.579882 1_1:+28667891 Msa0017300:intron
GTAAAGCACTCCTTAGCCGA+GGG 0.589316 1_1:-28667783 None:intergenic
GGGCATTGATGCCGTGACAA+GGG 0.591814 1_1:+28668848 Msa0017300:CDS
TCATGGGTGGTACAAGAAGA+AGG 0.592810 1_1:+28666363 Msa0017300:CDS
GGCTTAAAGCGTCCAATGGT+AGG 0.593364 1_1:-28668936 None:intergenic
AGCACTTTAGCAGAGATGCC+CGG 0.594680 1_1:-28669261 None:intergenic
TATCCTAAAAGGATAATCAA+AGG 0.601605 1_1:-28667023 None:intergenic
CCGGCAAGAGATATTCTGAC+CGG 0.601734 1_1:-28667954 None:intergenic
CTGATCATGATCATGATCAT+GGG 0.604023 1_1:+28666347 Msa0017300:CDS
ATCTCAACAACCGCAGCCAG+TGG 0.604477 1_1:+28667993 Msa0017300:CDS
TACCTGTGCAATATATGGAT+AGG 0.609388 1_1:-28667137 None:intergenic
TGGATAGGCTTCATCAACAA+TGG 0.610971 1_1:-28667122 None:intergenic
TGCGGGCTTAAAGCGTCCAA+TGG 0.612041 1_1:-28668940 None:intergenic
TATGGTGGGTATAAGAGCTG+CGG 0.617209 1_1:-28668958 None:intergenic
ATGGTGGGTATAAGAGCTGC+GGG 0.623020 1_1:-28668957 None:intergenic
CAAATATACACAATTGTGGG+TGG 0.628614 1_1:-28669378 None:intergenic
CTGTAATGATTAATGAACAA+GGG 0.631380 1_1:-28669454 None:intergenic
CGTAAAGCACTCCTTAGCCG+AGG 0.633199 1_1:-28667784 None:intergenic
GTTGTTGAGATGTTACAGAC+TGG 0.636049 1_1:-28667981 None:intergenic
AGAAGTTCTTGGATAATCTG+AGG 0.636314 1_1:-28669228 None:intergenic
GCTGTAATGATTAATGAACA+AGG 0.647224 1_1:-28669455 None:intergenic
TATACCCACCATAACCGAAG+AGG 0.649980 1_1:+28668968 Msa0017300:CDS
TCTTGACGGATGAATCCCCT+CGG 0.651670 1_1:+28667767 Msa0017300:CDS
AGCTGTAATAAAATTCTCGA+AGG 0.654599 1_1:-28667869 None:intergenic
ATTATAAGGGCAAAGTATGG+GGG 0.655388 1_1:-28667046 None:intergenic
ATCATGATCATGATCATGGG+TGG 0.712442 1_1:+28666350 Msa0017300:CDS
TAAAGCACTCCTTAGCCGAG+GGG 0.715422 1_1:-28667782 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTCACTTATATATATTAGTT+AGG + chr1_1:28666562-28666581 Msa0017300:intron 15.0%
!! TCACTTATATATATTAGTTA+GGG + chr1_1:28666563-28666582 Msa0017300:intron 15.0%
!!! TTTTATCAATCAAATCTTTT+TGG + chr1_1:28666717-28666736 Msa0017300:intron 15.0%
!!! AAATGGTTACTATTAAATTT+TGG + chr1_1:28667520-28667539 Msa0017300:intron 15.0%
!! AGTATAATAACTAAATTACT+TGG - chr1_1:28668147-28668166 None:intergenic 15.0%
!! TAGTATAAAAATATGATTGT+AGG - chr1_1:28668286-28668305 None:intergenic 15.0%
!!! AAAAATACACATCGATATTT+TGG - chr1_1:28666838-28666857 None:intergenic 20.0%
!!! TGATGTAGATATAACAATTT+TGG + chr1_1:28667481-28667500 Msa0017300:intron 20.0%
!!! TTTTATACTAATTACAACAG+AGG + chr1_1:28668296-28668315 Msa0017300:intron 20.0%
!!! AAAGTCGTATATAATTTTTG+TGG + chr1_1:28668488-28668507 Msa0017300:intron 20.0%
!!! TGATTTATTTTAGCTTAACA+AGG + chr1_1:28669151-28669170 Msa0017300:intron 20.0%
!! TTATTTATCTATTTGTCTGT+GGG + chr1_1:28669184-28669203 Msa0017300:intron 20.0%
!! TATTTATATATACTGGTATG+TGG - chr1_1:28669419-28669438 None:intergenic 20.0%
!! TTCAATTGATTTCATGGTTA+TGG - chr1_1:28666424-28666443 None:intergenic 25.0%
!! TTCTTCTTCAATTGATTTCA+TGG - chr1_1:28666430-28666449 None:intergenic 25.0%
! GAAATCAATTGAAGAAGAAA+AGG + chr1_1:28666431-28666450 Msa0017300:intron 25.0%
! ATATATAAGTGAAAGTGAGA+GGG - chr1_1:28666555-28666574 None:intergenic 25.0%
! TATATATAAGTGAAAGTGAG+AGG - chr1_1:28666556-28666575 None:intergenic 25.0%
! AAAAGACACTTAAAGAAGAA+CGG - chr1_1:28666802-28666821 None:intergenic 25.0%
!! TTACCTTTGATTATCCTTTT+AGG + chr1_1:28667020-28667039 Msa0017300:CDS 25.0%
! TATCCTAAAAGGATAATCAA+AGG - chr1_1:28667026-28667045 None:intergenic 25.0%
! TAATTATAAGGGCAAAGTAT+GGG - chr1_1:28667051-28667070 None:intergenic 25.0%
! ATACTTTGCCCTTATAATTA+GGG + chr1_1:28667051-28667070 Msa0017300:CDS 25.0%
! AATTATACCTGTGCAATATA+TGG - chr1_1:28667145-28667164 None:intergenic 25.0%
!!! TTCATCGATTTCAAAAACAT+TGG - chr1_1:28667294-28667313 None:intergenic 25.0%
! TACAGAAAAAATTAAGCCAA+TGG + chr1_1:28667377-28667396 Msa0017300:intron 25.0%
! ACAGAAAAAATTAAGCCAAT+GGG + chr1_1:28667378-28667397 Msa0017300:intron 25.0%
!! TAGATATAACAATTTTGGAC+AGG + chr1_1:28667486-28667505 Msa0017300:intron 25.0%
!!! TAGTCTTAGACTTAGTTTTA+TGG + chr1_1:28667550-28667569 Msa0017300:intron 25.0%
!! AATTTTCCGATGAAGAATTT+TGG - chr1_1:28667582-28667601 None:intergenic 25.0%
!! ATATTCATGACAGATTTTGA+TGG + chr1_1:28667612-28667631 Msa0017300:intron 25.0%
! CTTTACGTTACACTATATAT+GGG + chr1_1:28667800-28667819 Msa0017300:CDS 25.0%
!!! TTTTTTCCGAGAATTTCTTT+TGG + chr1_1:28668059-28668078 Msa0017300:CDS 25.0%
! GGAATTATTGTACTTTCATA+TGG - chr1_1:28668174-28668193 None:intergenic 25.0%
! CAATAAAGTAAAAGAAGTCA+AGG - chr1_1:28668203-28668222 None:intergenic 25.0%
!! ATTGTCGAAGTTTTCAAATT+TGG + chr1_1:28668260-28668279 Msa0017300:intron 25.0%
! CTCAAATTGAATAAATCAGT+TGG + chr1_1:28668540-28668559 Msa0017300:intron 25.0%
!! GTTGGTAAAATTAACTGAAA+AGG + chr1_1:28668558-28668577 Msa0017300:intron 25.0%
!! TAACTGAAAAGGTTTGTTTA+TGG + chr1_1:28668569-28668588 Msa0017300:intron 25.0%
! CTTATTTATCTATTTGTCTG+TGG + chr1_1:28669183-28669202 Msa0017300:intron 25.0%
! TGTCAAATATACACAATTGT+GGG - chr1_1:28669384-28669403 None:intergenic 25.0%
! ATTGTGTATATTTGACAGAA+TGG + chr1_1:28669387-28669406 Msa0017300:three_prime_UTR 25.0%
! CTGTAATGATTAATGAACAA+GGG - chr1_1:28669457-28669476 None:intergenic 25.0%
!! ACCAACAACGTTTTTGTTTA+TGG + chr1_1:28666389-28666408 Msa0017300:intron 30.0%
ACCATAAACAAAAACGTTGT+TGG - chr1_1:28666393-28666412 None:intergenic 30.0%
TTGAAGAAGAAAAGGAAAGA+TGG + chr1_1:28666439-28666458 Msa0017300:intron 30.0%
AAAAGGAAAGATGGTGTTTA+GGG + chr1_1:28666448-28666467 Msa0017300:intron 30.0%
ATCACAGTACACTTAATTCA+AGG - chr1_1:28666513-28666532 None:intergenic 30.0%
TATATAAGTGAAAGTGAGAG+GGG - chr1_1:28666554-28666573 None:intergenic 30.0%
TTCGCAAACAAATTTACCAT+TGG + chr1_1:28666595-28666614 Msa0017300:intron 30.0%
TCGCAAACAAATTTACCATT+GGG + chr1_1:28666596-28666615 Msa0017300:intron 30.0%
AATTATAAGGGCAAAGTATG+GGG - chr1_1:28667050-28667069 None:intergenic 30.0%
CTAATTATAAGGGCAAAGTA+TGG - chr1_1:28667052-28667071 None:intergenic 30.0%
CATACTTTGCCCTTATAATT+AGG + chr1_1:28667050-28667069 Msa0017300:CDS 30.0%
! GATGTCTAAGTTTTACTTGA+AGG + chr1_1:28667256-28667275 Msa0017300:intron 30.0%
!!! AGACAGAAATTTTTTCCCAT+TGG - chr1_1:28667396-28667415 None:intergenic 30.0%
AAAAATTTCTGTCTAGTGTC+TGG + chr1_1:28667402-28667421 Msa0017300:intron 30.0%
TCTAGTGTCTGGAAATAAAA+GGG + chr1_1:28667413-28667432 Msa0017300:intron 30.0%
AGTACACCAAAATTCTTCAT+CGG + chr1_1:28667573-28667592 Msa0017300:intron 30.0%
GCTTTACGTTACACTATATA+TGG + chr1_1:28667799-28667818 Msa0017300:CDS 30.0%
TACACTATATATGGGAAATC+TGG + chr1_1:28667808-28667827 Msa0017300:CDS 30.0%
AGCTGTAATAAAATTCTCGA+AGG - chr1_1:28667872-28667891 None:intergenic 30.0%
TAAAGTAAAAGAAGTCAAGG+AGG - chr1_1:28668200-28668219 None:intergenic 30.0%
AGTAAAATCTGAACAAGGTA+TGG + chr1_1:28668397-28668416 Msa0017300:intron 30.0%
! TTTTGTGGTAAAATTCCACA+TGG + chr1_1:28668503-28668522 Msa0017300:intron 30.0%
ATGACTCCAAAAACAGTTTA+TGG - chr1_1:28668655-28668674 None:intergenic 30.0%
GTAAGAATTATGTCCTTACT+AGG + chr1_1:28668879-28668898 Msa0017300:CDS 30.0%
CAGTATAACTTTATCCTCTT+CGG - chr1_1:28668985-28669004 None:intergenic 30.0%
TTCTTAGCAGATTATCTTCT+CGG + chr1_1:28669292-28669311 Msa0017300:CDS 30.0%
CTGTCAAATATACACAATTG+TGG - chr1_1:28669385-28669404 None:intergenic 30.0%
GATTAATGAACAAGGGTAAA+TGG - chr1_1:28669450-28669469 None:intergenic 30.0%
GCTGTAATGATTAATGAACA+AGG - chr1_1:28669458-28669477 None:intergenic 30.0%
TCTGATCATGATCATGATCA+TGG + chr1_1:28666346-28666365 Msa0017300:CDS 35.0%
CTGATCATGATCATGATCAT+GGG + chr1_1:28666347-28666366 Msa0017300:CDS 35.0%
GAAAAGGAAAGATGGTGTTT+AGG + chr1_1:28666447-28666466 Msa0017300:intron 35.0%
! AGATGGTGTTTAGGGTTTAA+AGG + chr1_1:28666456-28666475 Msa0017300:intron 35.0%
AGAAAAGCTATGCGTGTTTA+GGG + chr1_1:28666484-28666503 Msa0017300:intron 35.0%
TATGAAGGAAGTTTCCTAGA+GGG - chr1_1:28666622-28666641 None:intergenic 35.0%
TTATGAAGGAAGTTTCCTAG+AGG - chr1_1:28666623-28666642 None:intergenic 35.0%
CTAGGAAACTTCCTTCATAA+CGG + chr1_1:28666623-28666642 Msa0017300:intron 35.0%
GGCAAAAAACATCAACTTTC+AGG + chr1_1:28666973-28666992 Msa0017300:intron 35.0%
ATTATAAGGGCAAAGTATGG+GGG - chr1_1:28667049-28667068 None:intergenic 35.0%
TCATCAACAATGGCAAAATC+AGG - chr1_1:28667115-28667134 None:intergenic 35.0%
TACCTGTGCAATATATGGAT+AGG - chr1_1:28667140-28667159 None:intergenic 35.0%
!! ACTGGCTTATAGCTTTAACT+TGG + chr1_1:28667218-28667237 Msa0017300:intron 35.0%
GTCTAGTGTCTGGAAATAAA+AGG + chr1_1:28667412-28667431 Msa0017300:intron 35.0%
CTAGTGTCTGGAAATAAAAG+GGG + chr1_1:28667414-28667433 Msa0017300:intron 35.0%
TAGTGTCTGGAAATAAAAGG+GGG + chr1_1:28667415-28667434 Msa0017300:intron 35.0%
AGCACAAAAAAATTGCAGTG+TGG - chr1_1:28667683-28667702 None:intergenic 35.0%
TTACTGATAGAGACTCTTGA+CGG + chr1_1:28667753-28667772 Msa0017300:intron 35.0%
TTTATTACAGCTGCCAAAAG+TGG + chr1_1:28667880-28667899 Msa0017300:intron 35.0%
ATCAGACAGCAAAAATGCTA+GGG - chr1_1:28668031-28668050 None:intergenic 35.0%
TATCAGACAGCAAAAATGCT+AGG - chr1_1:28668032-28668051 None:intergenic 35.0%
!! AGCATTTTTGCTGTCTGATA+AGG + chr1_1:28668032-28668051 Msa0017300:CDS 35.0%
!! GCATTTTTGCTGTCTGATAA+GGG + chr1_1:28668033-28668052 Msa0017300:CDS 35.0%
!! CATTTTTGCTGTCTGATAAG+GGG + chr1_1:28668034-28668053 Msa0017300:CDS 35.0%
AGCGTAGTAAAATCTGAACA+AGG + chr1_1:28668392-28668411 Msa0017300:intron 35.0%
! CAAGGTACAATGTTACTTCT+GGG + chr1_1:28668459-28668478 Msa0017300:intron 35.0%
AAACAAAACTTAAGCGCCAT+AGG - chr1_1:28668609-28668628 None:intergenic 35.0%
! TAGCCACCATAAACTGTTTT+TGG + chr1_1:28668646-28668665 Msa0017300:intron 35.0%
ACTCCAAAAACAGTTTATGG+TGG - chr1_1:28668652-28668671 None:intergenic 35.0%
! TCTGTGCAAGTGTTGTTATA+TGG + chr1_1:28668790-28668809 Msa0017300:intron 35.0%
TAGGTACCATACCGAAAATA+GGG - chr1_1:28668920-28668939 None:intergenic 35.0%
AACTTTATCCTCTTCGGTTA+TGG - chr1_1:28668979-28668998 None:intergenic 35.0%
TTTATCTATTTGTCTGTGGG+TGG + chr1_1:28669187-28669206 Msa0017300:intron 35.0%
AGAAGTTCTTGGATAATCTG+AGG - chr1_1:28669231-28669250 None:intergenic 35.0%
GATAATCTGCTAAGAACATC+AGG - chr1_1:28669288-28669307 None:intergenic 35.0%
TCTTAGCAGATTATCTTCTC+GGG + chr1_1:28669293-28669312 Msa0017300:CDS 35.0%
CAAATATACACAATTGTGGG+TGG - chr1_1:28669381-28669400 None:intergenic 35.0%
ATCATGATCATGATCATGGG+TGG + chr1_1:28666350-28666369 Msa0017300:CDS 40.0%
GAGAAAAGCTATGCGTGTTT+AGG + chr1_1:28666483-28666502 Msa0017300:intron 40.0%
CACTTAACTAGCCGTTATGA+AGG - chr1_1:28666637-28666656 None:intergenic 40.0%
AAACATCAACTTTCAGGAGC+TGG + chr1_1:28666979-28666998 Msa0017300:intron 40.0%
!! AAGTATGGGGGTATCCTAAA+AGG - chr1_1:28667037-28667056 None:intergenic 40.0%
GCCCTTATAATTAGGGCTAT+CGG + chr1_1:28667058-28667077 Msa0017300:CDS 40.0%
CCCGATAGCCCTAATTATAA+GGG - chr1_1:28667062-28667081 None:intergenic 40.0%
CCCTTATAATTAGGGCTATC+GGG + chr1_1:28667059-28667078 Msa0017300:CDS 40.0%
CCTTATAATTAGGGCTATCG+GGG + chr1_1:28667060-28667079 Msa0017300:CDS 40.0%
!! TTGGAAGGGATAGCTTTAGT+AGG + chr1_1:28667085-28667104 Msa0017300:CDS 40.0%
TGGATAGGCTTCATCAACAA+TGG - chr1_1:28667125-28667144 None:intergenic 40.0%
AGCCTATCCATATATTGCAC+AGG + chr1_1:28667135-28667154 Msa0017300:CDS 40.0%
TGCACAGGTATAATTGTCTC+TGG + chr1_1:28667150-28667169 Msa0017300:intron 40.0%
CAGTTCTTGACAATGACAGA+GGG - chr1_1:28667202-28667221 None:intergenic 40.0%
CTTTCAAGCACTTCTTGTTC+AGG - chr1_1:28667317-28667336 None:intergenic 40.0%
GATGTAATTGGATGCCTTCA+AGG + chr1_1:28667443-28667462 Msa0017300:intron 40.0%
! ACAATTTTGGACAGGATGCA+CGG + chr1_1:28667494-28667513 Msa0017300:intron 40.0%
AGCTTGGGCTTATTACTAAC+CGG + chr1_1:28667935-28667954 Msa0017300:CDS 40.0%
GTTGTTGAGATGTTACAGAC+TGG - chr1_1:28667984-28668003 None:intergenic 40.0%
CCTCGTCCAAAAGAAATTCT+CGG - chr1_1:28668068-28668087 None:intergenic 40.0%
TAAAAGAAGTCAAGGAGGAG+AGG - chr1_1:28668195-28668214 None:intergenic 40.0%
GATCCAAGAAAAATTCGCCA+AGG + chr1_1:28668441-28668460 Msa0017300:intron 40.0%
! GTACCTTGGCGAATTTTTCT+TGG - chr1_1:28668447-28668466 None:intergenic 40.0%
CCAGAAGTAACATTGTACCT+TGG - chr1_1:28668461-28668480 None:intergenic 40.0%
! CCAAGGTACAATGTTACTTC+TGG + chr1_1:28668458-28668477 Msa0017300:intron 40.0%
TGTGGTAAAATTCCACATGG+TGG + chr1_1:28668506-28668525 Msa0017300:intron 40.0%
TTGACTCATGCAGATTGTCA+AGG + chr1_1:28668827-28668846 Msa0017300:intron 40.0%
TGACTCATGCAGATTGTCAA+GGG + chr1_1:28668828-28668847 Msa0017300:intron 40.0%
TACCATTTGTTCCCTTGTCA+CGG - chr1_1:28668862-28668881 None:intergenic 40.0%
TGCATTCTGAACTCCTAGTA+AGG - chr1_1:28668895-28668914 None:intergenic 40.0%
! CAGAATGCAAGCCCTATTTT+CGG + chr1_1:28668906-28668925 Msa0017300:CDS 40.0%
GTAGGTACCATACCGAAAAT+AGG - chr1_1:28668921-28668940 None:intergenic 40.0%
TTATCCTCTTCGGTTATGGT+GGG - chr1_1:28668975-28668994 None:intergenic 40.0%
TTTATCCTCTTCGGTTATGG+TGG - chr1_1:28668976-28668995 None:intergenic 40.0%
!! TGTGGGTGGATTAAGCATTA+AGG - chr1_1:28669367-28669386 None:intergenic 40.0%
TCATGGGTGGTACAAGAAGA+AGG + chr1_1:28666363-28666382 Msa0017300:CDS 45.0%
AATTTACCATTGGGCCCTCT+AGG + chr1_1:28666605-28666624 Msa0017300:intron 45.0%
CCCCGATAGCCCTAATTATA+AGG - chr1_1:28667063-28667082 None:intergenic 45.0%
! AATTAGGGCTATCGGGGTTT+TGG + chr1_1:28667066-28667085 Msa0017300:CDS 45.0%
CCAGTTCTTGACAATGACAG+AGG - chr1_1:28667203-28667222 None:intergenic 45.0%
CCTCTGTCATTGTCAAGAAC+TGG + chr1_1:28667200-28667219 Msa0017300:intron 45.0%
AAGGGGGACATCGATGTAAT+TGG + chr1_1:28667431-28667450 Msa0017300:intron 45.0%
TGGATGCCTTCAAGGTTTAG+AGG + chr1_1:28667451-28667470 Msa0017300:intron 45.0%
ATGCCTTCAAGGTTTAGAGG+AGG + chr1_1:28667454-28667473 Msa0017300:intron 45.0%
TGCCTTCAAGGTTTAGAGGA+GGG + chr1_1:28667455-28667474 Msa0017300:intron 45.0%
ATCCCTCCTCTAAACCTTGA+AGG - chr1_1:28667460-28667479 None:intergenic 45.0%
! CAATTTTGGACAGGATGCAC+GGG + chr1_1:28667495-28667514 Msa0017300:intron 45.0%
ATTACAGCTGCCAAAAGTGG+AGG + chr1_1:28667883-28667902 Msa0017300:intron 45.0%
AGAGGATCTGAAAGGGAGTA+TGG + chr1_1:28667909-28667928 Msa0017300:CDS 45.0%
GATGTTACAGACTGGAATCC+CGG - chr1_1:28667976-28667995 None:intergenic 45.0%
! CCGAGAATTTCTTTTGGACG+AGG + chr1_1:28668065-28668084 Msa0017300:CDS 45.0%
GCAAAAGTAATGCCACCATG+TGG - chr1_1:28668521-28668540 None:intergenic 45.0%
GTTTACTACGAACGAGCGTA+TGG + chr1_1:28668695-28668714 Msa0017300:intron 45.0%
! TGCAAGCCCTATTTTCGGTA+TGG + chr1_1:28668911-28668930 Msa0017300:CDS 45.0%
TTCGGTATGGTACCTACCAT+TGG + chr1_1:28668924-28668943 Msa0017300:CDS 45.0%
!! TATGGTGGGTATAAGAGCTG+CGG - chr1_1:28668961-28668980 None:intergenic 45.0%
TATACCCACCATAACCGAAG+AGG + chr1_1:28668968-28668987 Msa0017300:CDS 45.0%
! GAACAATGTCCAGAAAGTGC+TGG + chr1_1:28669004-28669023 Msa0017300:CDS 45.0%
TCAAGAACTCCAGCACTTTC+TGG - chr1_1:28669016-28669035 None:intergenic 45.0%
TCTGTCAAGCACATCTAGTC+AGG + chr1_1:28669049-28669068 Msa0017300:CDS 45.0%
TGAGGAACATTGAGAGCCTA+AGG - chr1_1:28669213-28669232 None:intergenic 45.0%
!! TATATTATATTTATATATAC+TGG - chr1_1:28669426-28669445 None:intergenic 5.0%
AAGTTTCCTAGAGGGCCCAA+TGG - chr1_1:28666614-28666633 None:intergenic 50.0%
! TCTTGACGGATGAATCCCCT+CGG + chr1_1:28667767-28667786 Msa0017300:CDS 50.0%
! TAAAGCACTCCTTAGCCGAG+GGG - chr1_1:28667785-28667804 None:intergenic 50.0%
! GTAAAGCACTCCTTAGCCGA+GGG - chr1_1:28667786-28667805 None:intergenic 50.0%
! ATCCTCTCCACCTCCACTTT+TGG - chr1_1:28667896-28667915 None:intergenic 50.0%
GAGGTGGAGAGGATCTGAAA+GGG + chr1_1:28667902-28667921 Msa0017300:intron 50.0%
! AAAGGGAGTATGGCTGAGCT+TGG + chr1_1:28667919-28667938 Msa0017300:CDS 50.0%
! AAGGGAGTATGGCTGAGCTT+GGG + chr1_1:28667920-28667939 Msa0017300:CDS 50.0%
CCGGCAAGAGATATTCTGAC+CGG - chr1_1:28667957-28667976 None:intergenic 50.0%
CCGGTCAGAATATCTCTTGC+CGG + chr1_1:28667954-28667973 Msa0017300:CDS 50.0%
CGGTCAGAATATCTCTTGCC+GGG + chr1_1:28667955-28667974 Msa0017300:CDS 50.0%
TGCCGTGACAAGGGAACAAA+TGG + chr1_1:28668857-28668876 Msa0017300:CDS 50.0%
! GGCTTAAAGCGTCCAATGGT+AGG - chr1_1:28668939-28668958 None:intergenic 50.0%
!! ATGGTGGGTATAAGAGCTGC+GGG - chr1_1:28668960-28668979 None:intergenic 50.0%
ATTTGTCTGTGGGTGGCCTT+AGG + chr1_1:28669194-28669213 Msa0017300:intron 50.0%
GCAACACTGGCAGAAGTTCT+TGG - chr1_1:28669242-28669261 None:intergenic 50.0%
AGAACTTCTGCCAGTGTTGC+CGG + chr1_1:28669242-28669261 Msa0017300:CDS 50.0%
AGCACTTTAGCAGAGATGCC+CGG - chr1_1:28669264-28669283 None:intergenic 50.0%
!!! AGGGCTATCGGGGTTTTGGA+AGG + chr1_1:28667070-28667089 Msa0017300:CDS 55.0%
!!! GGGCTATCGGGGTTTTGGAA+GGG + chr1_1:28667071-28667090 Msa0017300:CDS 55.0%
GACAGGATGCACGGGAGAAA+TGG + chr1_1:28667503-28667522 Msa0017300:intron 55.0%
! CGTAAAGCACTCCTTAGCCG+AGG - chr1_1:28667787-28667806 None:intergenic 55.0%
ACAGCTGCCAAAAGTGGAGG+TGG + chr1_1:28667886-28667905 Msa0017300:intron 55.0%
TGCCAAAAGTGGAGGTGGAG+AGG + chr1_1:28667891-28667910 Msa0017300:intron 55.0%
GGAGGTGGAGAGGATCTGAA+AGG + chr1_1:28667901-28667920 Msa0017300:intron 55.0%
ATCTCAACAACCGCAGCCAG+TGG + chr1_1:28667993-28668012 Msa0017300:CDS 55.0%
AACCGCAGCCAGTGGAAACA+CGG + chr1_1:28668001-28668020 Msa0017300:CDS 55.0%
CTTAAGCGCCATAGGCAGCA+TGG - chr1_1:28668601-28668620 None:intergenic 55.0%
!! AGGGCATTGATGCCGTGACA+AGG + chr1_1:28668847-28668866 Msa0017300:CDS 55.0%
!! GGGCATTGATGCCGTGACAA+GGG + chr1_1:28668848-28668867 Msa0017300:CDS 55.0%
! TGCGGGCTTAAAGCGTCCAA+TGG - chr1_1:28668943-28668962 None:intergenic 55.0%
GTGCTGGAGTTCTTGACTGC+AGG + chr1_1:28669020-28669039 Msa0017300:CDS 55.0%
GAACTTCTGCCAGTGTTGCC+GGG + chr1_1:28669243-28669262 Msa0017300:CDS 55.0%
CGGATGAATCCCCTCGGCTA+AGG + chr1_1:28667773-28667792 Msa0017300:CDS 60.0%
ACCGCAGCCAGTGGAAACAC+GGG + chr1_1:28668002-28668021 Msa0017300:CDS 60.0%
GGCTACTGCCATGCTGCCTA+TGG + chr1_1:28668590-28668609 Msa0017300:intron 60.0%
! GCCCGTGTTTCCACTGGCTG+CGG - chr1_1:28668006-28668025 None:intergenic 65.0%
AGGGCTGCCCGTGTTTCCAC+TGG - chr1_1:28668012-28668031 None:intergenic 65.0%
GCAGAGATGCCCGGCAACAC+TGG - chr1_1:28669255-28669274 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 28666319 28669540 28666319 ID=Msa0017300;Name=Msa0017300
chr1_1 mRNA 28666319 28669540 28666319 ID=Msa0017300-mRNA-1;Parent=Msa0017300;Name=Msa0017300-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0.6|0.33|0.83|0.6|0.5|6|190|303
chr1_1 exon 28666319 28666384 28666319 ID=Msa0017300-mRNA-1:exon:9544;Parent=Msa0017300-mRNA-1
chr1_1 exon 28666995 28667156 28666995 ID=Msa0017300-mRNA-1:exon:9545;Parent=Msa0017300-mRNA-1
chr1_1 exon 28667763 28667898 28667763 ID=Msa0017300-mRNA-1:exon:9546;Parent=Msa0017300-mRNA-1
chr1_1 exon 28667905 28668086 28667905 ID=Msa0017300-mRNA-1:exon:9547;Parent=Msa0017300-mRNA-1
chr1_1 exon 28668840 28669070 28668840 ID=Msa0017300-mRNA-1:exon:9548;Parent=Msa0017300-mRNA-1
chr1_1 exon 28669216 28669540 28669216 ID=Msa0017300-mRNA-1:exon:9549;Parent=Msa0017300-mRNA-1
chr1_1 CDS 28666319 28666384 28666319 ID=Msa0017300-mRNA-1:cds;Parent=Msa0017300-mRNA-1
chr1_1 CDS 28666995 28667156 28666995 ID=Msa0017300-mRNA-1:cds;Parent=Msa0017300-mRNA-1
chr1_1 CDS 28667763 28667898 28667763 ID=Msa0017300-mRNA-1:cds;Parent=Msa0017300-mRNA-1
chr1_1 CDS 28667905 28668086 28667905 ID=Msa0017300-mRNA-1:cds;Parent=Msa0017300-mRNA-1
chr1_1 CDS 28668840 28669070 28668840 ID=Msa0017300-mRNA-1:cds;Parent=Msa0017300-mRNA-1
chr1_1 CDS 28669216 28669350 28669216 ID=Msa0017300-mRNA-1:cds;Parent=Msa0017300-mRNA-1
chr1_1 three_prime_UTR 28669351 28669540 28669351 ID=Msa0017300-mRNA-1:three_prime_utr;Parent=Msa0017300-mRNA-1
Gene Sequence

>Msa0017300

AATCATCACGTTTTCTTTTCTTGTTTCTCTGATCATGATCATGATCATGGGTGGTACAAGAAGAAGGAGCTGGCATCAGATTTAGCACAAATTACCTTTGATTATCCTTTTAGGATACCCCCATACTTTGCCCTTATAATTAGGGCTATCGGGGTTTTGGAAGGGATAGCTTTAGTAGGAAATCCTGATTTTGCCATTGTTGATGAAGCCTATCCATATATTGCACAGAGACTCTTGACGGATGAATCCCCTCGGCTAAGGAGTGCTTTACGTTACACTATATATGGGAAATCTGGAGTTTTCGATGCTGAAAGATTTATTGATGTCATGCAAGCCTTCGAGAATTTTATTACAGCTGCCAAAAGTGGAGAGGATCTGAAAGGGAGTATGGCTGAGCTTGGGCTTATTACTAACCGGTCAGAATATCTCTTGCCGGGATTCCAGTCTGTAACATCTCAACAACCGCAGCCAGTGGAAACACGGGCAGCCCTAGCATTTTTGCTGTCTGATAAGGGGAATTTTTTCCGAGAATTTCTTTTGGACGAGATTGTCAAGGGCATTGATGCCGTGACAAGGGAACAAATGGTAAGAATTATGTCCTTACTAGGAGTTCAGAATGCAAGCCCTATTTTCGGTATGGTACCTACCATTGGACGCTTTAAGCCCGCAGCTCTTATACCCACCATAACCGAAGAGGATAAAGTTATACTGAACAATGTCCAGAAAGTGCTGGAGTTCTTGACTGCAGGAAGCACTCTGTCAAGCACATCTAGTCAGGCTCTCAATGTTCCTCAGATTATCCAAGAACTTCTGCCAGTGTTGCCGGGCATCTCTGCTAAAGTGCTTCCTGATGTTCTTAGCAGATTATCTTCTCGGGTATTAGCGCGATTAATTCGTGATGCATTTTTGTAA

Protein sequence

>Msa0017300

NHHVFFSCFSDHDHDHGWYKKKELASDLAQITFDYPFRIPPYFALIIRAIGVLEGIALVGNPDFAIVDEAYPYIAQRLLTDESPRLRSALRYTIYGKSGVFDAERFIDVMQAFENFITAAKSGEDLKGSMAELGLITNRSEYLLPGFQSVTSQQPQPVETRAALAFLLSDKGNFFREFLLDEIVKGIDAVTREQMVRIMSLLGVQNASPIFGMVPTIGRFKPAALIPTITEEDKVILNNVQKVLEFLTAGSTLSSTSSQALNVPQIIQELLPVLPGISAKVLPDVLSRLSSRVLARLIRDAFL*