AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0550990


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0550990 MtrunA17_Chr4g0035951 95.274 402 15 3 1 400 1 400 0.0 776
Msa0550990 MtrunA17_Chr4g0028361 95.025 402 16 3 1 400 1 400 0.0 775
Msa0550990 MtrunA17_Chr1g0208981 83.146 356 59 1 45 400 37 391 0.0 618
Msa0550990 MtrunA17_Chr4g0035981 96.203 237 9 0 164 400 4 240 3.28e-170 475
Msa0550990 MtrunA17_Chr7g0265821 56.250 352 149 4 53 400 8 358 6.07e-135 390
Msa0550990 MtrunA17_Chr5g0429051 56.534 352 148 4 53 400 8 358 1.95e-134 389
Msa0550990 MtrunA17_Chr5g0447091 56.091 353 151 3 51 400 6 357 4.65e-133 385
Msa0550990 MtrunA17_Chr1g0179211 54.545 352 155 4 53 400 8 358 1.96e-128 374
Msa0550990 MtrunA17_Chr4g0035971 95.000 140 5 1 1 140 1 138 1.47e-87 261
Msa0550990 MtrunA17_Chr5g0429031 60.500 200 78 1 55 253 51 250 9.13e-79 243
Msa0550990 MtrunA17_Chr5g0429021 52.273 132 59 3 272 400 1 131 1.96e-36 129
Msa0550990 MtrunA17_Chr7g0265811 46.809 94 26 1 157 250 21 90 2.36e-20 85.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0550990 AT2G21330.1 82.426 404 62 5 1 400 1 399 0.0 679
Msa0550990 AT4G38970.1 83.042 401 60 4 4 400 2 398 0.0 674
Msa0550990 AT2G21330.3 79.950 404 62 6 1 400 1 389 0.0 652
Msa0550990 AT2G01140.1 74.750 400 88 3 4 400 2 391 0.0 614
Msa0550990 AT2G21330.2 82.051 312 47 5 1 308 1 307 0.0 518
Msa0550990 AT4G38970.2 78.834 326 54 5 4 318 2 323 0.0 512
Msa0550990 AT4G26530.1 57.062 354 147 4 51 400 6 358 7.78e-137 395
Msa0550990 AT4G26530.3 57.062 354 147 4 51 400 6 358 7.78e-137 395
Msa0550990 AT4G26530.2 57.062 354 147 4 51 400 6 358 7.78e-137 395
Msa0550990 AT2G36460.1 56.534 352 148 4 53 400 8 358 2.03e-134 389
Msa0550990 AT3G52930.1 55.398 352 152 4 53 400 8 358 4.10e-132 384
Msa0550990 AT5G03690.2 55.398 352 153 3 53 400 8 359 5.58e-129 375
Msa0550990 AT4G26520.1 55.398 352 152 4 53 400 8 358 5.84e-127 370
Msa0550990 AT4G26520.3 55.556 351 151 4 53 399 8 357 1.47e-126 369
Msa0550990 AT4G26520.2 55.271 351 152 4 54 400 6 355 3.36e-126 368
Msa0550990 AT4G26520.4 55.271 351 152 4 54 400 6 355 3.36e-126 368
Msa0550990 AT5G03690.1 55.301 349 152 3 56 400 45 393 4.97e-126 369
Msa0550990 AT2G36460.3 55.970 268 113 4 137 400 1 267 4.06e-98 293
Msa0550990 AT2G36460.2 55.970 268 113 4 137 400 1 267 4.06e-98 293
Msa0550990 AT5G03690.3 54.307 267 118 3 138 400 1 267 1.58e-91 276
Msa0550990 AT5G03690.4 54.307 267 118 3 138 400 1 267 1.58e-91 276

Find 152 sgRNAs with CRISPR-Local

Find 238 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGTTTATGTTCTATCATTT+TGG 0.179738 4_1:-46580356 None:intergenic
TTTGACAAACAATTCCTTCT+TGG 0.220264 4_1:-46580108 None:intergenic
TTCTGCATTGCTGGTTTAAA+TGG 0.221504 4_1:-46577239 None:intergenic
GTCACCAGGTCGTGGTATTT+TGG 0.250260 4_1:+46578426 Msa0550990:CDS
TAGGGTTTGGTGCCCCTTGC+TGG 0.266781 4_1:+46578874 Msa0550990:intron
TGCTTGGTATTCTGCATTGC+TGG 0.303849 4_1:-46577248 None:intergenic
GGGAAGCGTTTGGCTTCAAT+TGG 0.313845 4_1:+46578475 Msa0550990:CDS
CCAAGCATGGCGTACCCTTC+TGG 0.314758 4_1:+46578522 Msa0550990:CDS
TTGAAGTAGCACAAAAGGTT+TGG 0.329064 4_1:+46579536 Msa0550990:CDS
TTGTCCTTGCACTCAGCTCC+TGG 0.340552 4_1:-46579634 None:intergenic
CGTGCCATGGGTTTGGAGAT+TGG 0.341879 4_1:-46579923 None:intergenic
ACCATGATACCAGGGACAGC+TGG 0.345678 4_1:-46579715 None:intergenic
AAGATCTCTGGTTCCACAAT+TGG 0.357070 4_1:-46579481 None:intergenic
CAGAAGATTGACGGAGGGTT+TGG 0.370944 4_1:-46577520 None:intergenic
ATCGAGCAAAACATTGTTCC+TGG 0.371352 4_1:+46578646 Msa0550990:CDS
TGAGGAGAATGCCCTCAAAT+TGG 0.371449 4_1:-46579594 None:intergenic
CTCTGGTGCCATTCTCTTTG+AGG 0.372847 4_1:+46578573 Msa0550990:CDS
TGAAGTAGCACAAAAGGTTT+GGG 0.375792 4_1:+46579537 Msa0550990:CDS
GTATAGTCAGCGACTGTTGC+AGG 0.376805 4_1:-46579664 None:intergenic
CTGGTGACAGTTCCATCTCT+TGG 0.383065 4_1:+46578541 Msa0550990:CDS
TGGCAAAACGAGCACCTTGC+TGG 0.386451 4_1:-46578960 None:intergenic
AACGACACGTGCCATGGGTT+TGG 0.390092 4_1:-46579930 None:intergenic
TGCTACTTGTGGGAAGCGTT+TGG 0.390936 4_1:+46578465 Msa0550990:CDS
CCCAGCTGTCCCTGGTATCA+TGG 0.393404 4_1:+46579714 Msa0550990:CDS
CAAGGAAGCAGCCTGGGGTC+TGG 0.397653 4_1:+46579160 Msa0550990:CDS
TGGGTTTGGAGATTGGTTCA+TGG 0.399088 4_1:-46579916 None:intergenic
ATGTCTTCAAAGCGGTGTTT+TGG 0.400162 4_1:-46579971 None:intergenic
GCTCTGATAGTGAGACTTGA+TGG 0.402824 4_1:-46577578 None:intergenic
TGCAGTCAAGGAAGCAGCCT+GGG 0.414972 4_1:+46579154 Msa0550990:CDS
GCAAGAGCAGAGGGACCATT+GGG 0.415270 4_1:-46579134 None:intergenic
CTTGATGGAGCGGCAGTGGC+AGG 0.422194 4_1:-46577563 None:intergenic
GTAAAGAGGTTCATTGTTTG+AGG 0.425568 4_1:+46577395 Msa0550990:five_prime_UTR
TCCTTCCATCTGTTGTGGAT+TGG 0.437495 4_1:-46578606 None:intergenic
TACAACTTAATAATATCTCT+TGG 0.451646 4_1:+46580292 Msa0550990:three_prime_UTR
AGCACAAAAGGTTTGGGCTG+AGG 0.454604 4_1:+46579543 Msa0550990:CDS
AGTTGGACTTAGCACGGAAA+AGG 0.464478 4_1:-46580037 None:intergenic
TCCAACTCAATTGCTCAACT+TGG 0.471150 4_1:+46580053 Msa0550990:CDS
GAACCAGAGATCTTGCTTGA+TGG 0.472497 4_1:+46579490 Msa0550990:CDS
GTTCATGGCATTCAAGTTGA+GGG 0.472908 4_1:-46579901 None:intergenic
AATCTTCCTTCCATCTGTTG+TGG 0.472992 4_1:-46578611 None:intergenic
TGAGAACAATGTCCAATTTG+AGG 0.474283 4_1:+46579582 Msa0550990:CDS
AATTAATGACGGAAAATGAA+TGG 0.474522 4_1:+46580188 Msa0550990:three_prime_UTR
AGATCTCTGGTTCCACAATT+GGG 0.476937 4_1:-46579480 None:intergenic
TGCAAGAGCAGAGGGACCAT+TGG 0.484583 4_1:-46579135 None:intergenic
CCAGAAGGGTACGCCATGCT+TGG 0.485923 4_1:-46578522 None:intergenic
TGTTCTTGACAAGTCTGATT+GGG 0.486855 4_1:+46577490 Msa0550990:CDS
TCCCTCTGCTCTTGCAGTCA+AGG 0.489422 4_1:+46579142 Msa0550990:CDS
TTGGCACCATGACTCATCAT+TGG 0.492416 4_1:-46578899 None:intergenic
GTGAAGTGATGTCTCATTTG+AGG 0.492762 4_1:-46577321 None:intergenic
TCGCTACGCTGCAATTAGTC+AGG 0.494622 4_1:+46579184 Msa0550990:CDS
TTGCAGTCAAGGAAGCAGCC+TGG 0.495043 4_1:+46579153 Msa0550990:CDS
AGGCCGCATAGAGAACGTTC+AGG 0.498349 4_1:+46579998 Msa0550990:CDS
TCCACATGTCAAGTGATGAT+AGG 0.498626 4_1:+46577284 Msa0550990:five_prime_UTR
TCTCTTGGAGAGTACATCTC+TGG 0.498855 4_1:+46578556 Msa0550990:CDS
GGAAGCGTTTGGCTTCAATT+GGG 0.502252 4_1:+46578476 Msa0550990:CDS
TTGTTCTTGACAAGTCTGAT+TGG 0.503124 4_1:+46577489 Msa0550990:CDS
GCATAAGTTGTGTGGTAAAG+AGG 0.506024 4_1:+46577381 Msa0550990:five_prime_UTR
AAGAAGGAATTGTTTGTCAA+AGG 0.507696 4_1:+46580110 Msa0550990:CDS
GCATTGCTGGTTTAAATGGA+TGG 0.512547 4_1:-46577235 None:intergenic
GAGAACAATGTCCAATTTGA+GGG 0.514083 4_1:+46579583 Msa0550990:CDS
GAGACTTGATGGAGCGGCAG+TGG 0.515132 4_1:-46577567 None:intergenic
CTCATCATTGGAACCAGCAA+GGG 0.517446 4_1:-46578887 None:intergenic
CCATGCTTGGCGGTTAACTT+CGG 0.520579 4_1:-46578509 None:intergenic
TCCTTGACTGCAAGAGCAGA+GGG 0.521193 4_1:-46579143 None:intergenic
ACCTTGTCAACTTTGATACC+AGG 0.524302 4_1:-46578664 None:intergenic
GACAAGTCTGATTGGGTGAA+GGG 0.524417 4_1:+46577497 Msa0550990:CDS
TTCTCCTGTGAAGGAGCTTG+AGG 0.524713 4_1:-46579687 None:intergenic
CTCTACCAATCCACAACAGA+TGG 0.525359 4_1:+46578601 Msa0550990:CDS
GGTTCATGGCATTCAAGTTG+AGG 0.530771 4_1:-46579902 None:intergenic
TATGAGAACGACACGTGCCA+TGG 0.532775 4_1:-46579936 None:intergenic
CAACGGATTGGTCCCAATTG+TGG 0.534112 4_1:+46579468 Msa0550990:CDS
ATACCCTCAAGCTCCTTCAC+AGG 0.534468 4_1:+46579683 Msa0550990:CDS
AAAACACCGCTTTGAAGACA+TGG 0.536857 4_1:+46579973 Msa0550990:CDS
TAAAGAGGTTCATTGTTTGA+GGG 0.536953 4_1:+46577396 Msa0550990:five_prime_UTR
TCTCCATCAAGCAAGATCTC+TGG 0.540606 4_1:-46579493 None:intergenic
TCTCCTGTGAAGGAGCTTGA+GGG 0.542263 4_1:-46579686 None:intergenic
CAGAAAACAATTGCGTCACC+AGG 0.544188 4_1:+46578412 Msa0550990:intron
TGACAAGTCTGATTGGGTGA+AGG 0.544531 4_1:+46577496 Msa0550990:CDS
CCATGATACCAGGGACAGCT+GGG 0.545501 4_1:-46579714 None:intergenic
ACGCTTCCCACAAGTAGCAT+TGG 0.547732 4_1:-46578461 None:intergenic
GAGAGTCTCCTCAAAGAGAA+TGG 0.550591 4_1:-46578581 None:intergenic
AAGCCTAGCATGGTTACTCC+AGG 0.551395 4_1:+46579616 Msa0550990:CDS
TGAATCTGAGGAAGCCAAGA+AGG 0.552492 4_1:+46580094 Msa0550990:CDS
GCTCCTGGAGTAACCATGCT+AGG 0.553694 4_1:-46579619 None:intergenic
CACTGGTGAGGGTGAATCTG+AGG 0.554064 4_1:+46580082 Msa0550990:CDS
GAAGGGTACGCCATGCTTGG+CGG 0.555457 4_1:-46578519 None:intergenic
TCCAAGTTGAGCAATTGAGT+TGG 0.559400 4_1:-46580054 None:intergenic
AGCGTAGCGAGCCAGACCCC+AGG 0.559466 4_1:-46579171 None:intergenic
TCAAGTCTCACTATCAGAGC+TGG 0.559579 4_1:+46577581 Msa0550990:CDS
GGATGATAACAATGCTTGCT+TGG 0.562542 4_1:-46577264 None:intergenic
ATCTTGCTTGATGGAGAACA+TGG 0.567139 4_1:+46579499 Msa0550990:CDS
ACCTATCATCACTTGACATG+TGG 0.567903 4_1:-46577285 None:intergenic
TACTCCAGGAGCTGAGTGCA+AGG 0.568532 4_1:+46579630 Msa0550990:CDS
GGTTTATTAGGACAACGGAT+TGG 0.572758 4_1:+46579456 Msa0550990:intron
ACAATTGCGTCACCAGGTCG+TGG 0.577031 4_1:+46578418 Msa0550990:CDS
AGGAGCTGAGTGCAAGGACA+AGG 0.577780 4_1:+46579636 Msa0550990:CDS
CAGTGGCCACAGAAGATTGA+CGG 0.579214 4_1:-46577529 None:intergenic
CAATTGAGTTGGACTTAGCA+CGG 0.579344 4_1:-46580043 None:intergenic
TTTGTCTGGTGGACAATCTG+AGG 0.579742 4_1:+46579869 Msa0550990:CDS
GTGTCACATACCATGATACC+AGG 0.579988 4_1:-46579724 None:intergenic
GTCAGCGACTGTTGCAGGAG+AGG 0.582574 4_1:-46579659 None:intergenic
AGTAGCATTGGACTCATCCA+TGG 0.582662 4_1:-46578449 None:intergenic
TTGATGGAGCGGCAGTGGCA+GGG 0.585211 4_1:-46577562 None:intergenic
CGCGGTCTTAACGAGCTCAT+CGG 0.585953 4_1:-46577612 None:intergenic
ACTCATCATTGGAACCAGCA+AGG 0.586276 4_1:-46578888 None:intergenic
ATGAGAACGACACGTGCCAT+GGG 0.588604 4_1:-46579935 None:intergenic
CTGGTTCCAATGATGAGTCA+TGG 0.590508 4_1:+46578893 Msa0550990:CDS
AATGATGAGTCATGGTGCCA+AGG 0.590718 4_1:+46578901 Msa0550990:CDS
CATTCTCCTCAAGCCTAGCA+TGG 0.591042 4_1:+46579606 Msa0550990:CDS
TTCCTTGACTGCAAGAGCAG+AGG 0.592530 4_1:-46579144 None:intergenic
AGGCAAGACCGTCTAGACCT+TGG 0.593561 4_1:-46578918 None:intergenic
GAGATGGAACTGTCACCAGA+AGG 0.597318 4_1:-46578537 None:intergenic
TCATGGTGCCAAGGTCTAGA+CGG 0.600249 4_1:+46578910 Msa0550990:CDS
GAGATGTACTCTCCAAGAGA+TGG 0.600655 4_1:-46578553 None:intergenic
AAAGAAGTGCATAAGTTGTG+TGG 0.601057 4_1:+46577373 Msa0550990:five_prime_UTR
CCGAAGTTAACCGCCAAGCA+TGG 0.601093 4_1:+46578509 Msa0550990:CDS
ATGAGTCCAATGCTACTTGT+GGG 0.603827 4_1:+46578455 Msa0550990:CDS
ATTGGACATTGTTCTCAGCA+AGG 0.604841 4_1:-46579576 None:intergenic
TCCTGGTATCAAAGTTGACA+AGG 0.608575 4_1:+46578663 Msa0550990:CDS
AACCCTCCGTCAATCTTCTG+TGG 0.610302 4_1:+46577523 Msa0550990:CDS
TTAATGGTTTATTAGGACAA+CGG 0.610985 4_1:+46579451 Msa0550990:intron
GAGTAACCATGCTAGGCTTG+AGG 0.616311 4_1:-46579612 None:intergenic
CTTGGAAAGTACACTGGTGA+GGG 0.616339 4_1:+46580071 Msa0550990:CDS
GAAAAGAGATGCTGATGCAG+AGG 0.620632 4_1:-46577456 None:intergenic
AAACACCGCTTTGAAGACAT+GGG 0.624450 4_1:+46579974 Msa0550990:CDS
GCAGCATCAACAATTAATGA+CGG 0.626376 4_1:+46580177 Msa0550990:three_prime_UTR
ACCAATCCACAACAGATGGA+AGG 0.626896 4_1:+46578605 Msa0550990:CDS
ACTTGGAAAGTACACTGGTG+AGG 0.631708 4_1:+46580070 Msa0550990:CDS
GATGAGTCCAATGCTACTTG+TGG 0.631942 4_1:+46578454 Msa0550990:CDS
GGCAGGGTTGCATCGTACAG+TGG 0.635268 4_1:-46577546 None:intergenic
ACCGCTTTGAAGACATGGGG+AGG 0.635657 4_1:+46579978 Msa0550990:CDS
ACTGTTGTGAGCATCCCCAA+TGG 0.641479 4_1:+46579119 Msa0550990:CDS
AGATGGAACTGTCACCAGAA+GGG 0.643682 4_1:-46578536 None:intergenic
GTAGTATGCAGCTGAACGAG+AGG 0.646365 4_1:-46578938 None:intergenic
GCAGTCAAGGAAGCAGCCTG+GGG 0.647968 4_1:+46579155 Msa0550990:CDS
GGCCACAGAAGATTGACGGA+GGG 0.649503 4_1:-46577525 None:intergenic
TGAACCAATCTCCAAACCCA+TGG 0.649676 4_1:+46579919 Msa0550990:CDS
TCTTGTTAGACAGTAAACAA+TGG 0.656611 4_1:+46577433 Msa0550990:exon
GCTCAACTTGGAAAGTACAC+TGG 0.658104 4_1:+46580065 Msa0550990:CDS
GCCTCCCCATGTCTTCAAAG+CGG 0.661856 4_1:-46579979 None:intergenic
CATGATACCAGGGACAGCTG+GGG 0.665632 4_1:-46579713 None:intergenic
TCATCATTGGAACCAGCAAG+GGG 0.668545 4_1:-46578886 None:intergenic
TCAGCTGCATACTACCAGCA+AGG 0.670241 4_1:+46578946 Msa0550990:CDS
ATGATACCAGGGACAGCTGG+GGG 0.672628 4_1:-46579712 None:intergenic
ATGGCCAAAATACCACGACC+TGG 0.675188 4_1:-46578430 None:intergenic
GATAGTGAGACTTGATGGAG+CGG 0.677338 4_1:-46577573 None:intergenic
TGGCCACAGAAGATTGACGG+AGG 0.694744 4_1:-46577526 None:intergenic
CAAGAGCAGAGGGACCATTG+GGG 0.710291 4_1:-46579133 None:intergenic
AACACCGCTTTGAAGACATG+GGG 0.711193 4_1:+46579975 Msa0550990:CDS
CTGCCTGAACGTTCTCTATG+CGG 0.711654 4_1:-46580001 None:intergenic
CGATGAGCTCGTTAAGACCG+CGG 0.717465 4_1:+46577613 Msa0550990:CDS
TGTCACATACCATGATACCA+GGG 0.730745 4_1:-46579723 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAAAAATGAACTATAATT+TGG - chr4_1:46577200-46577219 None:intergenic 10.0%
!!! ATTATAGTTCATTTTTTAAA+CGG + chr4_1:46577201-46577220 Msa0550990:five_prime_UTR 10.0%
!!! TTACATAAATAATTTTATCA+AGG + chr4_1:46579256-46579275 Msa0550990:intron 10.0%
!!! TTAAAAAGTTTGTTTAAAAA+TGG - chr4_1:46580402-46580421 None:intergenic 10.0%
!!! GTTTTTTAAGTTATACTAAT+CGG - chr4_1:46577664-46577683 None:intergenic 15.0%
!!! AACATTTTATTTTATTCCAA+TGG - chr4_1:46578107-46578126 None:intergenic 15.0%
!!! ATATTTTTTTCTAGAAAGTA+TGG + chr4_1:46578275-46578294 Msa0550990:intron 15.0%
!!! TATTTTTTTCTAGAAAGTAT+GGG + chr4_1:46578276-46578295 Msa0550990:intron 15.0%
!! GCTAAAATTTATTCATTTAA+TGG + chr4_1:46579435-46579454 Msa0550990:intron 15.0%
!! TATTCATTTAATGGTTTATT+AGG + chr4_1:46579444-46579463 Msa0550990:intron 15.0%
!! TATGAACAAAGATAAAAATT+TGG - chr4_1:46579776-46579795 None:intergenic 15.0%
!!! ATGTTAAAAAGAAATCATTT+TGG - chr4_1:46580379-46580398 None:intergenic 15.0%
!! AATCAATTGTATAATTTGAG+TGG - chr4_1:46579218-46579237 None:intergenic 20.0%
!! TTATAATATTATGTAACTGC+AGG - chr4_1:46579350-46579369 None:intergenic 20.0%
!! AATACAAAGAACAATGTATT+TGG - chr4_1:46579753-46579772 None:intergenic 20.0%
!! CAAAATACAATATACAACTT+TGG - chr4_1:46579837-46579856 None:intergenic 20.0%
!! TACAACTTAATAATATCTCT+TGG + chr4_1:46580292-46580311 Msa0550990:three_prime_UTR 20.0%
! TTCTAGCATATGTGTTTAAT+CGG - chr4_1:46577690-46577709 None:intergenic 25.0%
!!! TAATTCTTTTTTTTGCGTAG+TGG + chr4_1:46577739-46577758 Msa0550990:intron 25.0%
!!! AATTCTTTTTTTTGCGTAGT+GGG + chr4_1:46577740-46577759 Msa0550990:intron 25.0%
! AAAAAGTAGACTTAAGAAAG+TGG + chr4_1:46578024-46578043 Msa0550990:intron 25.0%
! AAAAGTAGACTTAAGAAAGT+GGG + chr4_1:46578025-46578044 Msa0550990:intron 25.0%
! TGAAATTCTTAAAACTGATG+TGG + chr4_1:46578126-46578145 Msa0550990:intron 25.0%
! TTACATTGTTCATGTTTCTT+TGG + chr4_1:46578346-46578365 Msa0550990:intron 25.0%
!! ACTCTATGTAACTACATTTT+TGG + chr4_1:46578699-46578718 Msa0550990:intron 25.0%
!!! ATTTTAATTTTGCTTCCACA+GGG - chr4_1:46579009-46579028 None:intergenic 25.0%
!!! AATTTTAATTTTGCTTCCAC+AGG - chr4_1:46579010-46579029 None:intergenic 25.0%
! GGAAGCAAAATTAAAATTTC+AGG + chr4_1:46579012-46579031 Msa0550990:intron 25.0%
! ATATGTGATTGAAATTCACA+TGG - chr4_1:46579092-46579111 None:intergenic 25.0%
! GTGAATTTCAATCACATATT+AGG + chr4_1:46579093-46579112 Msa0550990:intron 25.0%
! ATGAGATTGATTAAAAACCT+CGG + chr4_1:46579413-46579432 Msa0550990:intron 25.0%
!!! AAATGAATAAATTTTAGCCG+AGG - chr4_1:46579433-46579452 None:intergenic 25.0%
! TTAATGGTTTATTAGGACAA+CGG + chr4_1:46579451-46579470 Msa0550990:intron 25.0%
!! TGTTATGTATAGTTTTTGTC+TGG + chr4_1:46579855-46579874 Msa0550990:intron 25.0%
!! AATTAATGACGGAAAATGAA+TGG + chr4_1:46580188-46580207 Msa0550990:three_prime_UTR 25.0%
!!! GTGTAATGTTTTTATAGTCT+TGG + chr4_1:46580237-46580256 Msa0550990:three_prime_UTR 25.0%
!! TGGTTTATGTTCTATCATTT+TGG - chr4_1:46580359-46580378 None:intergenic 25.0%
TAAAGAGGTTCATTGTTTGA+GGG + chr4_1:46577396-46577415 Msa0550990:five_prime_UTR 30.0%
TCTTGTTAGACAGTAAACAA+TGG + chr4_1:46577433-46577452 Msa0550990:exon 30.0%
TTAAGTTAAGTATCATACCG+CGG - chr4_1:46577633-46577652 None:intergenic 30.0%
!! TAGTTTTCAAACTAGCTTGT+TGG + chr4_1:46577767-46577786 Msa0550990:intron 30.0%
GTTAAACCATGTATACTAAG+TGG + chr4_1:46577789-46577808 Msa0550990:intron 30.0%
! ATGCTCTAAGTAGATAAACA+TGG - chr4_1:46577886-46577905 None:intergenic 30.0%
ATGGAAAGGGACATTAAAAA+TGG + chr4_1:46578150-46578169 Msa0550990:intron 30.0%
!!! TATTTTTTGTTGCTTGTGTG+TGG + chr4_1:46578386-46578405 Msa0550990:intron 30.0%
CAAAGTTGACAAGGTATATT+TGG + chr4_1:46578672-46578691 Msa0550990:intron 30.0%
TAATAGTATCAACTAGCACT+CGG - chr4_1:46578781-46578800 None:intergenic 30.0%
CATAAGTAGACACATAAGTA+TGG - chr4_1:46578830-46578849 None:intergenic 30.0%
TTCTGTGACTATGAACAATA+GGG + chr4_1:46578856-46578875 Msa0550990:intron 30.0%
!!! TTTTAATTTTGCTTCCACAG+GGG - chr4_1:46579008-46579027 None:intergenic 30.0%
CATTAAAAACCTTGATGTTG+CGG - chr4_1:46579312-46579331 None:intergenic 30.0%
! CATCAAGGTTTTTAATGTCT+TGG + chr4_1:46579315-46579334 Msa0550990:intron 30.0%
!!! AACTTTTGAAGTAGCACAAA+AGG + chr4_1:46579531-46579550 Msa0550990:CDS 30.0%
! TATGTATAGTTTTTGTCTGG+TGG + chr4_1:46579858-46579877 Msa0550990:intron 30.0%
TTTGACAAACAATTCCTTCT+TGG - chr4_1:46580111-46580130 None:intergenic 30.0%
AAGAAGGAATTGTTTGTCAA+AGG + chr4_1:46580110-46580129 Msa0550990:CDS 30.0%
!!! TTGGAGACTATTTTTGTTTG+TGG + chr4_1:46580256-46580275 Msa0550990:three_prime_UTR 30.0%
!! TTCTGCATTGCTGGTTTAAA+TGG - chr4_1:46577242-46577261 None:intergenic 35.0%
! AAAGAAGTGCATAAGTTGTG+TGG + chr4_1:46577373-46577392 Msa0550990:five_prime_UTR 35.0%
GTAAAGAGGTTCATTGTTTG+AGG + chr4_1:46577395-46577414 Msa0550990:five_prime_UTR 35.0%
TTGTTCTTGACAAGTCTGAT+TGG + chr4_1:46577489-46577508 Msa0550990:CDS 35.0%
TGTTCTTGACAAGTCTGATT+GGG + chr4_1:46577490-46577509 Msa0550990:CDS 35.0%
GTTAGGAACAGGTTCTTATT+TGG + chr4_1:46577935-46577954 Msa0550990:intron 35.0%
TTTGGTTATACCACTAGAGT+TGG + chr4_1:46577953-46577972 Msa0550990:intron 35.0%
TGAAATTCAACCAACTCTAG+TGG - chr4_1:46577966-46577985 None:intergenic 35.0%
! AGAGTTGGTTGAATTTCATG+TGG + chr4_1:46577968-46577987 Msa0550990:intron 35.0%
AAGGAGTTGAAAGTGAGATA+AGG + chr4_1:46578056-46578075 Msa0550990:intron 35.0%
TGAGATACATGTTACACCAT+TGG + chr4_1:46578088-46578107 Msa0550990:intron 35.0%
TTCTTAAAACTGATGTGGCA+TGG + chr4_1:46578131-46578150 Msa0550990:intron 35.0%
TGGATGGTAGTAGAAATAAG+CGG - chr4_1:46578810-46578829 None:intergenic 35.0%
AGTAGACACATAAGTATGGA+TGG - chr4_1:46578826-46578845 None:intergenic 35.0%
GTTCTGTGACTATGAACAAT+AGG + chr4_1:46578855-46578874 Msa0550990:intron 35.0%
TGACTATGAACAATAGGGTT+TGG + chr4_1:46578861-46578880 Msa0550990:intron 35.0%
TCAAATAGACACCAACCATT+TGG - chr4_1:46578983-46579002 None:intergenic 35.0%
!! TTTAATTTTGCTTCCACAGG+GGG - chr4_1:46579007-46579026 None:intergenic 35.0%
! GTTTTTAATGTCTTGGCAGT+TGG + chr4_1:46579322-46579341 Msa0550990:intron 35.0%
TTGAAGTAGCACAAAAGGTT+TGG + chr4_1:46579536-46579555 Msa0550990:CDS 35.0%
TGAAGTAGCACAAAAGGTTT+GGG + chr4_1:46579537-46579556 Msa0550990:CDS 35.0%
TGAGAACAATGTCCAATTTG+AGG + chr4_1:46579582-46579601 Msa0550990:CDS 35.0%
GAGAACAATGTCCAATTTGA+GGG + chr4_1:46579583-46579602 Msa0550990:CDS 35.0%
GCAGCATCAACAATTAATGA+CGG + chr4_1:46580177-46580196 Msa0550990:three_prime_UTR 35.0%
!! GCATTGCTGGTTTAAATGGA+TGG - chr4_1:46577238-46577257 None:intergenic 40.0%
GGATGATAACAATGCTTGCT+TGG - chr4_1:46577267-46577286 None:intergenic 40.0%
TCCACATGTCAAGTGATGAT+AGG + chr4_1:46577284-46577303 Msa0550990:five_prime_UTR 40.0%
ACCTATCATCACTTGACATG+TGG - chr4_1:46577288-46577307 None:intergenic 40.0%
GTGAAGTGATGTCTCATTTG+AGG - chr4_1:46577324-46577343 None:intergenic 40.0%
GCATAAGTTGTGTGGTAAAG+AGG + chr4_1:46577381-46577400 Msa0550990:five_prime_UTR 40.0%
CTAGTTGAGCTCTTGAAGTT+AGG + chr4_1:46577918-46577937 Msa0550990:intron 40.0%
AGACTTAAGAAAGTGGGTGA+AGG + chr4_1:46578031-46578050 Msa0550990:intron 40.0%
AAGAAAGTGGGTGAAGGAAA+AGG + chr4_1:46578037-46578056 Msa0550990:intron 40.0%
AAAACTGATGTGGCATGGAA+AGG + chr4_1:46578136-46578155 Msa0550990:intron 40.0%
AAACTGATGTGGCATGGAAA+GGG + chr4_1:46578137-46578156 Msa0550990:intron 40.0%
! ATGAGTCCAATGCTACTTGT+GGG + chr4_1:46578455-46578474 Msa0550990:CDS 40.0%
AATCTTCCTTCCATCTGTTG+TGG - chr4_1:46578614-46578633 None:intergenic 40.0%
ATCGAGCAAAACATTGTTCC+TGG + chr4_1:46578646-46578665 Msa0550990:CDS 40.0%
TCCTGGTATCAAAGTTGACA+AGG + chr4_1:46578663-46578682 Msa0550990:CDS 40.0%
ACCTTGTCAACTTTGATACC+AGG - chr4_1:46578667-46578686 None:intergenic 40.0%
TTGATGTTGCGGTTAAAGTC+GGG - chr4_1:46579301-46579320 None:intergenic 40.0%
CTTGATGTTGCGGTTAAAGT+CGG - chr4_1:46579302-46579321 None:intergenic 40.0%
GGTTTATTAGGACAACGGAT+TGG + chr4_1:46579456-46579475 Msa0550990:intron 40.0%
! AGATCTCTGGTTCCACAATT+GGG - chr4_1:46579483-46579502 None:intergenic 40.0%
! AAGATCTCTGGTTCCACAAT+TGG - chr4_1:46579484-46579503 None:intergenic 40.0%
ATCTTGCTTGATGGAGAACA+TGG + chr4_1:46579499-46579518 Msa0550990:CDS 40.0%
ATTGGACATTGTTCTCAGCA+AGG - chr4_1:46579579-46579598 None:intergenic 40.0%
TGTCACATACCATGATACCA+GGG - chr4_1:46579726-46579745 None:intergenic 40.0%
!! GTTCATGGCATTCAAGTTGA+GGG - chr4_1:46579904-46579923 None:intergenic 40.0%
! ATGTCTTCAAAGCGGTGTTT+TGG - chr4_1:46579974-46579993 None:intergenic 40.0%
!! AAAACACCGCTTTGAAGACA+TGG + chr4_1:46579973-46579992 Msa0550990:CDS 40.0%
!! AAACACCGCTTTGAAGACAT+GGG + chr4_1:46579974-46579993 Msa0550990:CDS 40.0%
!! CAATTGAGTTGGACTTAGCA+CGG - chr4_1:46580046-46580065 None:intergenic 40.0%
TCCAACTCAATTGCTCAACT+TGG + chr4_1:46580053-46580072 Msa0550990:CDS 40.0%
! TCCAAGTTGAGCAATTGAGT+TGG - chr4_1:46580057-46580076 None:intergenic 40.0%
TGCTTGGTATTCTGCATTGC+TGG - chr4_1:46577251-46577270 None:intergenic 45.0%
GAAAAGAGATGCTGATGCAG+AGG - chr4_1:46577459-46577478 None:intergenic 45.0%
TGACAAGTCTGATTGGGTGA+AGG + chr4_1:46577496-46577515 Msa0550990:CDS 45.0%
GACAAGTCTGATTGGGTGAA+GGG + chr4_1:46577497-46577516 Msa0550990:CDS 45.0%
GATAGTGAGACTTGATGGAG+CGG - chr4_1:46577576-46577595 None:intergenic 45.0%
! GCTCTGATAGTGAGACTTGA+TGG - chr4_1:46577581-46577600 None:intergenic 45.0%
TCAAGTCTCACTATCAGAGC+TGG + chr4_1:46577581-46577600 Msa0550990:CDS 45.0%
TAAGTGGCCGACCACTTAAT+GGG + chr4_1:46577805-46577824 Msa0550990:intron 45.0%
GCCTTATCCCATTAAGTGGT+CGG - chr4_1:46577815-46577834 None:intergenic 45.0%
! CCAAGCCTTATCCCATTAAG+TGG - chr4_1:46577819-46577838 None:intergenic 45.0%
CCACTTAATGGGATAAGGCT+TGG + chr4_1:46577816-46577835 Msa0550990:intron 45.0%
GAGCTCTTGAAGTTAGGAAC+AGG + chr4_1:46577924-46577943 Msa0550990:intron 45.0%
CTGCATCAACAATGCGAAAG+TGG - chr4_1:46578239-46578258 None:intergenic 45.0%
CAGAAAACAATTGCGTCACC+AGG + chr4_1:46578412-46578431 Msa0550990:intron 45.0%
! AGTAGCATTGGACTCATCCA+TGG - chr4_1:46578452-46578471 None:intergenic 45.0%
! GATGAGTCCAATGCTACTTG+TGG + chr4_1:46578454-46578473 Msa0550990:CDS 45.0%
!! GGAAGCGTTTGGCTTCAATT+GGG + chr4_1:46578476-46578495 Msa0550990:CDS 45.0%
AGATGGAACTGTCACCAGAA+GGG - chr4_1:46578539-46578558 None:intergenic 45.0%
GAGATGTACTCTCCAAGAGA+TGG - chr4_1:46578556-46578575 None:intergenic 45.0%
! TCTCTTGGAGAGTACATCTC+TGG + chr4_1:46578556-46578575 Msa0550990:CDS 45.0%
GAGAGTCTCCTCAAAGAGAA+TGG - chr4_1:46578584-46578603 None:intergenic 45.0%
CTCTACCAATCCACAACAGA+TGG + chr4_1:46578601-46578620 Msa0550990:CDS 45.0%
ACCAATCCACAACAGATGGA+AGG + chr4_1:46578605-46578624 Msa0550990:CDS 45.0%
TCCTTCCATCTGTTGTGGAT+TGG - chr4_1:46578609-46578628 None:intergenic 45.0%
TCATCATTGGAACCAGCAAG+GGG - chr4_1:46578889-46578908 None:intergenic 45.0%
CTCATCATTGGAACCAGCAA+GGG - chr4_1:46578890-46578909 None:intergenic 45.0%
ACTCATCATTGGAACCAGCA+AGG - chr4_1:46578891-46578910 None:intergenic 45.0%
CTGGTTCCAATGATGAGTCA+TGG + chr4_1:46578893-46578912 Msa0550990:CDS 45.0%
TTGGCACCATGACTCATCAT+TGG - chr4_1:46578902-46578921 None:intergenic 45.0%
! AATGATGAGTCATGGTGCCA+AGG + chr4_1:46578901-46578920 Msa0550990:CDS 45.0%
!! AAGGTGCTCGTTTTGCCAAA+TGG + chr4_1:46578965-46578984 Msa0550990:CDS 45.0%
! TGCTCGTTTTGCCAAATGGT+TGG + chr4_1:46578969-46578988 Msa0550990:intron 45.0%
CGACTTTAACCGCAACATCA+AGG + chr4_1:46579300-46579319 Msa0550990:intron 45.0%
GAACCAGAGATCTTGCTTGA+TGG + chr4_1:46579490-46579509 Msa0550990:CDS 45.0%
TCTCCATCAAGCAAGATCTC+TGG - chr4_1:46579496-46579515 None:intergenic 45.0%
TGAGGAGAATGCCCTCAAAT+TGG - chr4_1:46579597-46579616 None:intergenic 45.0%
GTGTCACATACCATGATACC+AGG - chr4_1:46579727-46579746 None:intergenic 45.0%
! TTTGTCTGGTGGACAATCTG+AGG + chr4_1:46579869-46579888 Msa0550990:CDS 45.0%
!! GGTTCATGGCATTCAAGTTG+AGG - chr4_1:46579905-46579924 None:intergenic 45.0%
! TGGGTTTGGAGATTGGTTCA+TGG - chr4_1:46579919-46579938 None:intergenic 45.0%
TGAACCAATCTCCAAACCCA+TGG + chr4_1:46579919-46579938 Msa0550990:CDS 45.0%
!! AACACCGCTTTGAAGACATG+GGG + chr4_1:46579975-46579994 Msa0550990:CDS 45.0%
AGTTGGACTTAGCACGGAAA+AGG - chr4_1:46580040-46580059 None:intergenic 45.0%
! GCTCAACTTGGAAAGTACAC+TGG + chr4_1:46580065-46580084 Msa0550990:CDS 45.0%
! ACTTGGAAAGTACACTGGTG+AGG + chr4_1:46580070-46580089 Msa0550990:CDS 45.0%
! CTTGGAAAGTACACTGGTGA+GGG + chr4_1:46580071-46580090 Msa0550990:CDS 45.0%
TGAATCTGAGGAAGCCAAGA+AGG + chr4_1:46580094-46580113 Msa0550990:CDS 45.0%
CAGAAGATTGACGGAGGGTT+TGG - chr4_1:46577523-46577542 None:intergenic 50.0%
AACCCTCCGTCAATCTTCTG+TGG + chr4_1:46577523-46577542 Msa0550990:CDS 50.0%
CAGTGGCCACAGAAGATTGA+CGG - chr4_1:46577532-46577551 None:intergenic 50.0%
GGTCGGCCACTTAGTATACA+TGG - chr4_1:46577798-46577817 None:intergenic 50.0%
CTAAGTGGCCGACCACTTAA+TGG + chr4_1:46577804-46577823 Msa0550990:intron 50.0%
GCCGACCACTTAATGGGATA+AGG + chr4_1:46577811-46577830 Msa0550990:intron 50.0%
! GTCACCAGGTCGTGGTATTT+TGG + chr4_1:46578426-46578445 Msa0550990:CDS 50.0%
ATGGCCAAAATACCACGACC+TGG - chr4_1:46578433-46578452 None:intergenic 50.0%
!!! AGGTCGTGGTATTTTGGCCA+TGG + chr4_1:46578432-46578451 Msa0550990:CDS 50.0%
ACGCTTCCCACAAGTAGCAT+TGG - chr4_1:46578464-46578483 None:intergenic 50.0%
!! TGCTACTTGTGGGAAGCGTT+TGG + chr4_1:46578465-46578484 Msa0550990:CDS 50.0%
!! GGGAAGCGTTTGGCTTCAAT+TGG + chr4_1:46578475-46578494 Msa0550990:CDS 50.0%
CCATGCTTGGCGGTTAACTT+CGG - chr4_1:46578512-46578531 None:intergenic 50.0%
GAGATGGAACTGTCACCAGA+AGG - chr4_1:46578540-46578559 None:intergenic 50.0%
CTGGTGACAGTTCCATCTCT+TGG + chr4_1:46578541-46578560 Msa0550990:CDS 50.0%
!! CTCTGGTGCCATTCTCTTTG+AGG + chr4_1:46578573-46578592 Msa0550990:CDS 50.0%
! TCATGGTGCCAAGGTCTAGA+CGG + chr4_1:46578910-46578929 Msa0550990:CDS 50.0%
GTAGTATGCAGCTGAACGAG+AGG - chr4_1:46578941-46578960 None:intergenic 50.0%
TCAGCTGCATACTACCAGCA+AGG + chr4_1:46578946-46578965 Msa0550990:CDS 50.0%
GTGTCTATTTGATCCCCCTG+TGG + chr4_1:46578991-46579010 Msa0550990:intron 50.0%
ACTGTTGTGAGCATCCCCAA+TGG + chr4_1:46579119-46579138 Msa0550990:CDS 50.0%
TCCTTGACTGCAAGAGCAGA+GGG - chr4_1:46579146-46579165 None:intergenic 50.0%
TTCCTTGACTGCAAGAGCAG+AGG - chr4_1:46579147-46579166 None:intergenic 50.0%
TCGCTACGCTGCAATTAGTC+AGG + chr4_1:46579184-46579203 Msa0550990:CDS 50.0%
!! CAACGGATTGGTCCCAATTG+TGG + chr4_1:46579468-46579487 Msa0550990:CDS 50.0%
AGCACAAAAGGTTTGGGCTG+AGG + chr4_1:46579543-46579562 Msa0550990:CDS 50.0%
CATTCTCCTCAAGCCTAGCA+TGG + chr4_1:46579606-46579625 Msa0550990:CDS 50.0%
GAGTAACCATGCTAGGCTTG+AGG - chr4_1:46579615-46579634 None:intergenic 50.0%
AAGCCTAGCATGGTTACTCC+AGG + chr4_1:46579616-46579635 Msa0550990:CDS 50.0%
GTATAGTCAGCGACTGTTGC+AGG - chr4_1:46579667-46579686 None:intergenic 50.0%
ATACCCTCAAGCTCCTTCAC+AGG + chr4_1:46579683-46579702 Msa0550990:CDS 50.0%
TCTCCTGTGAAGGAGCTTGA+GGG - chr4_1:46579689-46579708 None:intergenic 50.0%
TTCTCCTGTGAAGGAGCTTG+AGG - chr4_1:46579690-46579709 None:intergenic 50.0%
ATGAGAACGACACGTGCCAT+GGG - chr4_1:46579938-46579957 None:intergenic 50.0%
TATGAGAACGACACGTGCCA+TGG - chr4_1:46579939-46579958 None:intergenic 50.0%
CTGCCTGAACGTTCTCTATG+CGG - chr4_1:46580004-46580023 None:intergenic 50.0%
GGCCACAGAAGATTGACGGA+GGG - chr4_1:46577528-46577547 None:intergenic 55.0%
TGGCCACAGAAGATTGACGG+AGG - chr4_1:46577529-46577548 None:intergenic 55.0%
CGCGGTCTTAACGAGCTCAT+CGG - chr4_1:46577615-46577634 None:intergenic 55.0%
CGATGAGCTCGTTAAGACCG+CGG + chr4_1:46577613-46577632 Msa0550990:CDS 55.0%
ACAATTGCGTCACCAGGTCG+TGG + chr4_1:46578418-46578437 Msa0550990:CDS 55.0%
CCGAAGTTAACCGCCAAGCA+TGG + chr4_1:46578509-46578528 Msa0550990:CDS 55.0%
AGGCAAGACCGTCTAGACCT+TGG - chr4_1:46578921-46578940 None:intergenic 55.0%
TGGCAAAACGAGCACCTTGC+TGG - chr4_1:46578963-46578982 None:intergenic 55.0%
CAAGAGCAGAGGGACCATTG+GGG - chr4_1:46579136-46579155 None:intergenic 55.0%
GCAAGAGCAGAGGGACCATT+GGG - chr4_1:46579137-46579156 None:intergenic 55.0%
TGCAAGAGCAGAGGGACCAT+TGG - chr4_1:46579138-46579157 None:intergenic 55.0%
TCCCTCTGCTCTTGCAGTCA+AGG + chr4_1:46579142-46579161 Msa0550990:CDS 55.0%
TTGCAGTCAAGGAAGCAGCC+TGG + chr4_1:46579153-46579172 Msa0550990:CDS 55.0%
TGCAGTCAAGGAAGCAGCCT+GGG + chr4_1:46579154-46579173 Msa0550990:CDS 55.0%
GCTCCTGGAGTAACCATGCT+AGG - chr4_1:46579622-46579641 None:intergenic 55.0%
TACTCCAGGAGCTGAGTGCA+AGG + chr4_1:46579630-46579649 Msa0550990:CDS 55.0%
TTGTCCTTGCACTCAGCTCC+TGG - chr4_1:46579637-46579656 None:intergenic 55.0%
AGGAGCTGAGTGCAAGGACA+AGG + chr4_1:46579636-46579655 Msa0550990:CDS 55.0%
CTGGGGGAATTCTCCTGTGA+AGG - chr4_1:46579699-46579718 None:intergenic 55.0%
ATGATACCAGGGACAGCTGG+GGG - chr4_1:46579715-46579734 None:intergenic 55.0%
CATGATACCAGGGACAGCTG+GGG - chr4_1:46579716-46579735 None:intergenic 55.0%
CCATGATACCAGGGACAGCT+GGG - chr4_1:46579717-46579736 None:intergenic 55.0%
ACCATGATACCAGGGACAGC+TGG - chr4_1:46579718-46579737 None:intergenic 55.0%
CGTGCCATGGGTTTGGAGAT+TGG - chr4_1:46579926-46579945 None:intergenic 55.0%
AACGACACGTGCCATGGGTT+TGG - chr4_1:46579933-46579952 None:intergenic 55.0%
!! ACCGCTTTGAAGACATGGGG+AGG + chr4_1:46579978-46579997 Msa0550990:CDS 55.0%
GCCTCCCCATGTCTTCAAAG+CGG - chr4_1:46579982-46580001 None:intergenic 55.0%
AGGCCGCATAGAGAACGTTC+AGG + chr4_1:46579998-46580017 Msa0550990:CDS 55.0%
CACTGGTGAGGGTGAATCTG+AGG + chr4_1:46580082-46580101 Msa0550990:CDS 55.0%
GGCAGGGTTGCATCGTACAG+TGG - chr4_1:46577549-46577568 None:intergenic 60.0%
TTGATGGAGCGGCAGTGGCA+GGG - chr4_1:46577565-46577584 None:intergenic 60.0%
GAGACTTGATGGAGCGGCAG+TGG - chr4_1:46577570-46577589 None:intergenic 60.0%
! GAAGGGTACGCCATGCTTGG+CGG - chr4_1:46578522-46578541 None:intergenic 60.0%
! CCAGAAGGGTACGCCATGCT+TGG - chr4_1:46578525-46578544 None:intergenic 60.0%
CCAAGCATGGCGTACCCTTC+TGG + chr4_1:46578522-46578541 Msa0550990:CDS 60.0%
!! TAGGGTTTGGTGCCCCTTGC+TGG + chr4_1:46578874-46578893 Msa0550990:intron 60.0%
GCAGTCAAGGAAGCAGCCTG+GGG + chr4_1:46579155-46579174 Msa0550990:CDS 60.0%
GTCAGCGACTGTTGCAGGAG+AGG - chr4_1:46579662-46579681 None:intergenic 60.0%
AGAATTCCCCCAGCTGTCCC+TGG + chr4_1:46579706-46579725 Msa0550990:CDS 60.0%
CCCAGCTGTCCCTGGTATCA+TGG + chr4_1:46579714-46579733 Msa0550990:CDS 60.0%
CTTGATGGAGCGGCAGTGGC+AGG - chr4_1:46577566-46577585 None:intergenic 65.0%
CAAGGAAGCAGCCTGGGGTC+TGG + chr4_1:46579160-46579179 Msa0550990:CDS 65.0%
AGCGTAGCGAGCCAGACCCC+AGG - chr4_1:46579174-46579193 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 46577176 46580432 46577176 ID=Msa0550990;Name=Msa0550990
chr4_1 mRNA 46577176 46580432 46577176 ID=Msa0550990-mRNA-1;Parent=Msa0550990;Name=Msa0550990-mRNA-1;_AED=0.28;_eAED=0.28;_QI=276|1|1|1|1|1|6|287|400
chr4_1 exon 46577176 46577634 46577176 ID=Msa0550990-mRNA-1:exon:12570;Parent=Msa0550990-mRNA-1
chr4_1 exon 46578415 46578684 46578415 ID=Msa0550990-mRNA-1:exon:12571;Parent=Msa0550990-mRNA-1
chr4_1 exon 46578877 46578986 46578877 ID=Msa0550990-mRNA-1:exon:12572;Parent=Msa0550990-mRNA-1
chr4_1 exon 46579115 46579205 46579115 ID=Msa0550990-mRNA-1:exon:12573;Parent=Msa0550990-mRNA-1
chr4_1 exon 46579466 46579735 46579466 ID=Msa0550990-mRNA-1:exon:12574;Parent=Msa0550990-mRNA-1
chr4_1 exon 46579867 46580432 46579867 ID=Msa0550990-mRNA-1:exon:12575;Parent=Msa0550990-mRNA-1
chr4_1 five_prime_UTR 46577176 46577451 46577176 ID=Msa0550990-mRNA-1:five_prime_utr;Parent=Msa0550990-mRNA-1
chr4_1 CDS 46577452 46577634 46577452 ID=Msa0550990-mRNA-1:cds;Parent=Msa0550990-mRNA-1
chr4_1 CDS 46578415 46578684 46578415 ID=Msa0550990-mRNA-1:cds;Parent=Msa0550990-mRNA-1
chr4_1 CDS 46578877 46578986 46578877 ID=Msa0550990-mRNA-1:cds;Parent=Msa0550990-mRNA-1
chr4_1 CDS 46579115 46579205 46579115 ID=Msa0550990-mRNA-1:cds;Parent=Msa0550990-mRNA-1
chr4_1 CDS 46579466 46579735 46579466 ID=Msa0550990-mRNA-1:cds;Parent=Msa0550990-mRNA-1
chr4_1 CDS 46579867 46580145 46579867 ID=Msa0550990-mRNA-1:cds;Parent=Msa0550990-mRNA-1
chr4_1 three_prime_UTR 46580146 46580432 46580146 ID=Msa0550990-mRNA-1:three_prime_utr;Parent=Msa0550990-mRNA-1
Gene Sequence

>Msa0550990

ATGGCCTCTGCATCAGCATCTCTTTTCAAGTCGTCGATTGTTCTTGACAAGTCTGATTGGGTGAAGGGCCAAACCCTCCGTCAATCTTCTGTGGCCACTGTACGATGCAACCCTGCCACTGCCGCTCCATCAAGTCTCACTATCAGAGCTGGTTCTTATGCCGATGAGCTCGTTAAGACCGCGAAAACAATTGCGTCACCAGGTCGTGGTATTTTGGCCATGGATGAGTCCAATGCTACTTGTGGGAAGCGTTTGGCTTCAATTGGGCTAGAGAACACCGAAGTTAACCGCCAAGCATGGCGTACCCTTCTGGTGACAGTTCCATCTCTTGGAGAGTACATCTCTGGTGCCATTCTCTTTGAGGAGACTCTCTACCAATCCACAACAGATGGAAGGAAGATTGTCGATGTACTTATCGAGCAAAACATTGTTCCTGGTATCAAAGTTGACAAGGGTTTGGTGCCCCTTGCTGGTTCCAATGATGAGTCATGGTGCCAAGGTCTAGACGGTCTTGCCTCTCGTTCAGCTGCATACTACCAGCAAGGTGCTCGTTTTGCCAAATGGCGTACTGTTGTGAGCATCCCCAATGGTCCCTCTGCTCTTGCAGTCAAGGAAGCAGCCTGGGGTCTGGCTCGCTACGCTGCAATTAGTCAGGACAACGGATTGGTCCCAATTGTGGAACCAGAGATCTTGCTTGATGGAGAACATGGTATTGACAGAACTTTTGAAGTAGCACAAAAGGTTTGGGCTGAGGTTTTCTTCTACCTTGCTGAGAACAATGTCCAATTTGAGGGCATTCTCCTCAAGCCTAGCATGGTTACTCCAGGAGCTGAGTGCAAGGACAAGGCCTCTCCTGCAACAGTCGCTGACTATACCCTCAAGCTCCTTCACAGGAGAATTCCCCCAGCTGTCCCTGGTATCATGTTTTTGTCTGGTGGACAATCTGAGGTTGAAGCAACCCTCAACTTGAATGCCATGAACCAATCTCCAAACCCATGGCACGTGTCGTTCTCATATGCAAGAGCTCTCCAAAACACCGCTTTGAAGACATGGGGAGGCCGCATAGAGAACGTTCAGGCAGCACAAGAAGCACTCCTTTTCCGTGCTAAGTCCAACTCAATTGCTCAACTTGGAAAGTACACTGGTGAGGGTGAATCTGAGGAAGCCAAGAAGGAATTGTTTGTCAAAGGATACTCTTATTAA

Protein sequence

>Msa0550990

MASASASLFKSSIVLDKSDWVKGQTLRQSSVATVRCNPATAAPSSLTIRAGSYADELVKTAKTIASPGRGILAMDESNATCGKRLASIGLENTEVNRQAWRTLLVTVPSLGEYISGAILFEETLYQSTTDGRKIVDVLIEQNIVPGIKVDKGLVPLAGSNDESWCQGLDGLASRSAAYYQQGARFAKWRTVVSIPNGPSALAVKEAAWGLARYAAISQDNGLVPIVEPEILLDGEHGIDRTFEVAQKVWAEVFFYLAENNVQFEGILLKPSMVTPGAECKDKASPATVADYTLKLLHRRIPPAVPGIMFLSGGQSEVEATLNLNAMNQSPNPWHVSFSYARALQNTALKTWGGRIENVQAAQEALLFRAKSNSIAQLGKYTGEGESEEAKKELFVKGYSY*