AlfalfaGEDB | Msa0046660

M. sativa cultivar zhongmu-4 / Msa0046660

KEGG: -
GO: GO:0000976 GO:0000977 GO:0001012 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0006357 GO:0007275 GO:0008150 GO:0009791 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044444 GO:0044464 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141
PFAM: PF14372.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0046660	RHN48386.1	96.863	1084	32	2	1	1082	1	1084	0.0	2187

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0046660	sp\|Q9M2N5\|DSLE_ARATH	60.656	671	221	6	412	1066	31	674	0.0	873

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0046660	A0A396H522	96.863	1084	32	2	1	1082	1	1084	0.0	2187

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000780	Msa0046660	-0.838918	2.161359e-57	-8.615850e-47
Msa0008850	Msa0046660	-0.809466	1.866458e-50	-8.615850e-47
Msa0013050	Msa0046660	0.834753	2.497789e-56	-8.615850e-47
Msa0020630	Msa0046660	-0.824154	9.411977e-54	-8.615850e-47
Msa0027540	Msa0046660	-0.821880	3.190982e-53	-8.615850e-47
Msa0030000	Msa0046660	-0.801801	7.587189e-49	-8.615850e-47
Msa0030380	Msa0046660	-0.814248	1.696733e-51	-8.615850e-47
Msa0030730	Msa0046660	-0.818634	1.769670e-52	-8.615850e-47
Msa0034560	Msa0046660	0.822934	1.815816e-53	-8.615850e-47
Msa0037820	Msa0046660	-0.821005	5.082175e-53	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0046660	MtrunA17_Chr7g0263231	96.863	1084	32	2	1	1082	1	1084	0.0	2187
Msa0046660	MtrunA17_Chr7g0263261	78.976	1113	115	9	1	1082	1	1025	0.0	1734
Msa0046660	MtrunA17_Chr4g0003151	49.774	663	308	9	421	1070	13	663	0.0	652
Msa0046660	MtrunA17_Chr2g0333261	47.832	692	324	14	411	1082	22	696	0.0	626
Msa0046660	MtrunA17_Chr2g0308821	38.026	547	315	9	534	1067	124	659	1.92e-124	395
Msa0046660	MtrunA17_Chr8g0359341	31.649	673	421	10	418	1067	51	707	4.66e-116	375
Msa0046660	MtrunA17_Chr8g0354631	28.843	683	435	11	416	1067	41	703	6.79e-91	308
Msa0046660	MtrunA17_Chr8g0383081	30.241	539	349	10	538	1066	29	550	1.22e-76	263
Msa0046660	MtrunA17_Chr4g0052681	29.490	529	364	6	544	1066	33	558	1.50e-76	264
Msa0046660	MtrunA17_Chr5g0402891	30.165	547	353	11	539	1067	44	579	9.94e-75	259

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0046660	AT3G42170.1	60.656	671	221	6	412	1066	31	674	0.0	873
Msa0046660	AT3G42170.2	60.507	671	222	6	412	1066	9	652	0.0	870
Msa0046660	AT1G18560.1	20.916	655	454	18	431	1069	46	652	2.29e-32	135

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Find 305 sgRNAs with CRISPR-Local

Find 455 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCAGCACAACAATGAG+AGG	0.594608	1_1:-78933856	Msa0046660:CDS
AAACGCGGAACGGCGGTGCC+GGG	0.506242	1_1:+78936903	None:intergenic
AAAGATAGAGTCAGAAGGAA+CGG	0.567707	1_1:+78931282	None:intergenic
AAAGGTCACCATGTTGAACT+GGG	0.524503	1_1:+78932659	None:intergenic
AAATCAGCACAACAATGAGA+GGG	0.653205	1_1:-78933855	Msa0046660:CDS
AAATTTACGCTGATTCCTGA+TGG	0.521810	1_1:+78930893	None:intergenic
AACACTTCACAACAATCAGC+TGG	0.557702	1_1:-78933213	Msa0046660:CDS
AACCAAGTTGGCGATCAACT+TGG	0.512168	1_1:-78934115	Msa0046660:CDS
AACTGACCATTGAAGATAAG+TGG	0.504675	1_1:+78932279	None:intergenic
AAGAATCCACTTATCTTCAA+TGG	0.469596	1_1:-78932285	Msa0046660:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGGTTCAATTAGATCTTATC+GGG	-	chr1_1:78930733-78930752	Msa0046660:three_prime_UTR	30.0%
TGTTTACGATATAGTTGTAC+CGG	-	chr1_1:78931256-78931275	Msa0046660:CDS	30.0%
ATTAGTAATTTGGTATAGGC+TGG	-	chr1_1:78931988-78932007	Msa0046660:CDS	30.0%
TTAGTAATTTGGTATAGGCT+GGG	-	chr1_1:78931989-78932008	Msa0046660:CDS	30.0%
GATATAGTCAGTGAGTAAAT+GGG	-	chr1_1:78932011-78932030	Msa0046660:CDS	30.0%
CAATAGATAATTAACCTGTC+CGG	-	chr1_1:78932125-78932144	Msa0046660:CDS	30.0%
ACTATCAGCAAATACAAACA+CGG	+	chr1_1:78932330-78932349	None:intergenic	30.0%
CTAACAATGATAGTAAGACA+CGG	+	chr1_1:78932391-78932410	None:intergenic	30.0%
CTTTGTAGAACTTGGAAATA+AGG	+	chr1_1:78932556-78932575	None:intergenic	30.0%
CAAGTTCTACAAAGCTAAAA+AGG	-	chr1_1:78932562-78932581	Msa0046660:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_1	gene	78930716	78937063	78930716	ID=Msa0046660;Name=Msa0046660
chr1_1	mRNA	78930716	78937063	78930716	ID=Msa0046660-mRNA-1;Parent=Msa0046660;Name=Msa0046660-mRNA-1;_AED=0.00;_eAED=0.00;_QI=305\|1\|1\|1\|0.5\|0.66\|3\|428\|1082
chr1_1	exon	78930716	78934411	78930716	ID=Msa0046660-mRNA-1:exon:27187;Parent=Msa0046660-mRNA-1
chr1_1	exon	78935196	78935290	78935196	ID=Msa0046660-mRNA-1:exon:27186;Parent=Msa0046660-mRNA-1
chr1_1	exon	78936873	78937063	78936873	ID=Msa0046660-mRNA-1:exon:27185;Parent=Msa0046660-mRNA-1
chr1_1	five_prime_UTR	78936873	78937063	78936873	ID=Msa0046660-mRNA-1:five_prime_utr;Parent=Msa0046660-mRNA-1
chr1_1	five_prime_UTR	78935196	78935290	78935196	ID=Msa0046660-mRNA-1:five_prime_utr;Parent=Msa0046660-mRNA-1
chr1_1	five_prime_UTR	78934393	78934411	78934393	ID=Msa0046660-mRNA-1:five_prime_utr;Parent=Msa0046660-mRNA-1
chr1_1	CDS	78931144	78934392	78931144	ID=Msa0046660-mRNA-1:cds;Parent=Msa0046660-mRNA-1
chr1_1	three_prime_UTR	78930716	78931143	78930716	ID=Msa0046660-mRNA-1:three_prime_utr;Parent=Msa0046660-mRNA-1

Gene Sequence

>Msa0046660

ATGGCTACCCTTGAAGAAGGTGAAGTAGCTATGTCCCCTGATGTAAAAGATGAGACGATCAATGTCGACAAGATGGATGTCTTTGAAGAAGACAAATTAGCGGTGACCCATGATGTAAAACAAGAGCTAAATGGTACTGACTCTCAACCTAGCAATGATCTTGTAACCCAGGTTACTGGTGGTGATGCAAATGTGTTGGACAATGCCAAAGAATGTCAGAAAAATGAGCCAGAGATTTCTGAATCACTACCCAAAAACCAAGTTGGCGATCAACTTGGTGATTCAAAAGCTACTCTTGACAAGTCTACCACTGAGGCACCACCCAGCATCCATGTGGTCGATTCTGAGGCATTGCCAAACAAAGGTGTGGTTTGTTCTGAAATGCAGACAAGTAATGATGTGGCTGTATCTGAAACACAGCACAGCAATGAGGATGCGGTACCTGAAGCACAGCACAACAATGAAGGGGTAGCTTTATCTGAAGCACAACACACAAATGAGGAGGTTGCATCGGAAAATCAGCACAACAATGAGAGGGTGCTTGCATCTGAAACACAGCCCACTGATGAGACTATTATCTGTGAAGCACAGCACAACAATGAGGAGGTTGTATCTGAACCACATTGTGATGATGAGGTGGTCATGTCTGAAGCACAGCCCATCAGTGAGGTGGTAATGTCTGACTCACAGCAGAACAATGTGGTCTTATCTGATTCGCAGCCGAGCAGTGAGGTAGTTTTTTCTGACACACAACCCAATATTGAGACTGTCATGTACGAGGCACAAATCAGTAATGAGACCGTATTGCATGAGGCGCAAATTAGCGATGAAGCCGTCATGCACGAGGCAGAAATCTGCAATGATGGGGTTGCATCTGAAGCTCGGCCTGAGAATGAGTTAGCCAATTCTACAATGGATCCCAACAATCAGCTATCCCATCAAGAAATTCTTGATAATCATCAGTTCACAGACAGTCATAACACAGATGACAGACCAATACCCCACAATCACTTGCAAGAGTATGATACGCATCCGAACAGTCATCTGGACAATCATGAGGCACTGGACAACCATCAGTTGCCTAACTCTGAAACACTCTCGCCTGATCAGCTAGCCAATTCCCAAATGATGTCTCATTATGACCTGGCAAATAATGAAACACTTCACAACAATCAGCTGGTAAGTTCTCAAGCACACTATGAGATAGTCAATGCTAACAATTTTCCCAGCTATGAAATAGTAAATGCTGAAACTCAGCCAAACAATGAAGAGCATACCCCAGAGACACAGCCAAGTAAGAGGAGGAAAAAAAAGTCTATAGTCTGGGAACACTTTACCATAGAAACAGTTAGCGCTGGATGTAGAAGGGCATGTTGCAAGGAATGCAAACAAACTTTTGCCTACAGTACTGGTTCAAAAGTTGCTGGTACCAGCCACCTTAAACGGCACATTGCCAAGGGGGCCTGCCCAGCTCTTCTGCGTAGTTTGGATCCAAATCAGCATGCCCCATATACCCCACGTTCAAGGGGAAGTGGTGCTAGTAATGCTAGCAATACACCAAAACGACGATACAGAACCGCCAGCACACCTTACATAATTTTTGATCAAGATCGTTGTCGTCATGAGATTGCTAGGATGATCATTATGCATGATTACCCCCTTCACATGGTTGAGCATCCAGGATTTGTTGCATTTGTCCGAAATCTGCAACCCCAGTTCAACATGGTGACCTTTAATACTATTCAAGGAGACTGTGTCGCAACTTACTTGACGGAAAAGCAAAACCTTTCAAAATATTTTGATGAGTTACCAGGACGTTTTGGTCTGACACTGGATATGTGGACCTCAAGTCAATCTGTAGGCTATGTATTTATCACGGGACATTTTGTTGATAGTGACTGGAAGTTGCAGAAGAGAATTCTCAATGTTGTGATGGAACCATGCCCTGATTCTGACTCTGCTCTCAGTCATGCTGTATCTGCCTGCATTTCTGATTGGAATTTGGAGGGTAGGCTGTTCACAATTACTTGTAATCAGCCACTTACTGAAGTTGCCCTTGAGAACCTTAGACCTCTACTCTCTGTGAAGAATCCACTTATCTTCAATGGTCAGTTGCTAATTGGACATTGCATTGCCCGTACTTTAAGCAATGTTGCATATGATTTGTTGAGCTCAGCACAAGGCATTGTCAATAAAATCCGGGAAAGTGTGAAATATGTGAAGACTTCAGAATCACACGAGGATAAATTCCTGGATCTTAAGGAACACCTTCAGGTTCCCAGTGAAAAGAGCCTTTTTATTGATGACCAAACCAAATGGAATACAACATATCAAATGTTGGTTGCAGCTTCTGAACTGAAGGAAGTGTTTTCCTGTTTAGACACTTCTGATCCTGATTACAAAGGAGCCCCATCTATTCCAGACTGGAAACTTGTTGAGATCCTTTGCACATACTTGAAGCCCCTTTATGATGCAGCAAACATTCTTATGACAACAACTTATCCCACTGCTATTACATTCTTTCATGAAGTTTGGAAATTACATTTGGATCTATCTCGAGCTGTTAAGAATGAAGATCCCTTCATTAGCGACCTTACTAAACCCATGTACGAAAAGATCGATAAGTACTGGAGAGATTGTAGTCTGGCTTTGGTGATTGCTGTAGTTATGGATCCTCGTTTCAAGATGAAGCTTGTTGAATTCAGTTTCACAAAAATCTACGGCGAGGATGCTCATGCGTTTGTCAAGATTGTTGATGACGGAATTCATGAGCTGTTTCATGAGTATGCAACCCTTCCTCTGCCACTAACACCGGCATATGCAGAAGAAGGAAATGCTGGAAGCAATATGAAGATGGAAGGATCCTCTGGAGGAACTTTGTTGTCAGATAATGGTCTTACAGACTTTGATGCCTACATCATGGAAACTTCTACCCATCAGACAAAGTCTGAATTGGATCAGTATCTGGAAGAATCTCTATTGCCACGAGTTCCAGACTTTGATGTATTAGGTTGGTGGAAGCTAAACAAACTTAAGTACCCCACACTTTCCAAGATGGCCCGAGATATATTGGCTATTCCAGTTTCTACCGTTCCTTCTGACTCTATCTTTGATAAAAAGAGCAAAGAGATGGATCAGTATCGAAGTTCCTTGCGTCCAGAGACAGTGGAGGCACTTGTGTGTGCCAAAGACTGGATGCAGTATGGTGCACCCGAATCTTCAACTGCGCTTGTGAAAATGGAATTCTAG

Protein sequence

>Msa0046660

MATLEEGEVAMSPDVKDETINVDKMDVFEEDKLAVTHDVKQELNGTDSQPSNDLVTQVTGGDANVLDNAKECQKNEPEISESLPKNQVGDQLGDSKATLDKSTTEAPPSIHVVDSEALPNKGVVCSEMQTSNDVAVSETQHSNEDAVPEAQHNNEGVALSEAQHTNEEVASENQHNNERVLASETQPTDETIICEAQHNNEEVVSEPHCDDEVVMSEAQPISEVVMSDSQQNNVVLSDSQPSSEVVFSDTQPNIETVMYEAQISNETVLHEAQISDEAVMHEAEICNDGVASEARPENELANSTMDPNNQLSHQEILDNHQFTDSHNTDDRPIPHNHLQEYDTHPNSHLDNHEALDNHQLPNSETLSPDQLANSQMMSHYDLANNETLHNNQLVSSQAHYEIVNANNFPSYEIVNAETQPNNEEHTPETQPSKRRKKKSIVWEHFTIETVSAGCRRACCKECKQTFAYSTGSKVAGTSHLKRHIAKGACPALLRSLDPNQHAPYTPRSRGSGASNASNTPKRRYRTASTPYIIFDQDRCRHEIARMIIMHDYPLHMVEHPGFVAFVRNLQPQFNMVTFNTIQGDCVATYLTEKQNLSKYFDELPGRFGLTLDMWTSSQSVGYVFITGHFVDSDWKLQKRILNVVMEPCPDSDSALSHAVSACISDWNLEGRLFTITCNQPLTEVALENLRPLLSVKNPLIFNGQLLIGHCIARTLSNVAYDLLSSAQGIVNKIRESVKYVKTSESHEDKFLDLKEHLQVPSEKSLFIDDQTKWNTTYQMLVAASELKEVFSCLDTSDPDYKGAPSIPDWKLVEILCTYLKPLYDAANILMTTTYPTAITFFHEVWKLHLDLSRAVKNEDPFISDLTKPMYEKIDKYWRDCSLALVIAVVMDPRFKMKLVEFSFTKIYGEDAHAFVKIVDDGIHELFHEYATLPLPLTPAYAEEGNAGSNMKMEGSSGGTLLSDNGLTDFDAYIMETSTHQTKSELDQYLEESLLPRVPDFDVLGWWKLNKLKYPTLSKMARDILAIPVSTVPSDSIFDKKSKEMDQYRSSLRPETVEALVCAKDWMQYGAPESSTALVKMEF*