AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0318250


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0318250 MtrunA17_Chr2g0291931 81.609 174 10 1 1 174 221 372 3.24e-91 270
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0318250 AT5G45170.1 55.488 164 51 1 2 165 227 368 4.67e-52 170
Msa0318250 AT5G45170.2 32.609 138 62 3 2 136 227 336 6.17e-12 63.2

Find 76 sgRNAs with CRISPR-Local

Find 214 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATCATTTCGTGTTGATATT+TGG 0.223031 2_4:-16780486 Msa0318250:three_prime_UTR
TCAGGAAAGGTGATTGCTTC+TGG 0.261931 2_4:-16781963 Msa0318250:CDS
AATCCTTTGGTTGTTTCTTC+TGG 0.279262 2_4:+16780770 Msa0318240:intron
TACCTGCTCTTGTGGCTTCC+TGG 0.288056 2_4:+16781923 Msa0318240:intron
CAGCAGAAGCTAGACAAAAT+AGG 0.300350 2_4:+16781816 Msa0318240:intron
TGCAACTGTGTCCTTGTTGC+AGG 0.329218 2_4:-16781101 Msa0318250:CDS
AAAATTACCATTCAATCCTT+TGG 0.339779 2_4:+16780757 Msa0318240:intron
GATAGGTAGCCCTGCATATT+CGG 0.364860 2_4:+16781124 Msa0318240:intron
GAGGCTGGGCAAAGTTTATA+TGG 0.382263 2_4:-16781996 Msa0318250:CDS
GGAAGCCAGACTGGAGTAGC+TGG 0.394652 2_4:-16781080 Msa0318250:CDS
AAAGGTGATTGCTTCTGGTT+TGG 0.402048 2_4:-16781958 Msa0318250:CDS
ATTGCCACTGTGGATGGGTT+TGG 0.410611 2_4:-16780832 Msa0318250:CDS
TGGAGTAGCTGGAGCTGAAC+GGG 0.412213 2_4:-16781069 Msa0318250:CDS
CATTAACAAATCCACGATAT+AGG 0.413902 2_4:-16780458 Msa0318250:three_prime_UTR
CTTGTTGCAGGAAGCCAGAC+TGG 0.414254 2_4:-16781089 Msa0318250:CDS
TTAGCAATTGCCACTGTGGA+TGG 0.417463 2_4:-16780838 Msa0318250:CDS
AAATATCAACACGAAATGAT+AGG 0.420491 2_4:+16780488 Msa0318240:intron
TTATATGGCCAACTTGTCTC+AGG 0.445619 2_4:-16781981 Msa0318250:CDS
TCTTCAGAGACAGTGTTTGC+TGG 0.447988 2_4:-16780521 Msa0318250:three_prime_UTR
AAAGCTTTAACTGCAGTCGC+TGG 0.455938 2_4:-16780318 Msa0318250:three_prime_UTR
AACTAACCTTTCGGATAAGC+TGG 0.461066 2_4:+16781733 Msa0318240:intron
CTAGAAATGAAGTTTAAGAT+AGG 0.461407 2_4:-16780546 Msa0318250:three_prime_UTR
CAGCTCCAGCTACTCCAGTC+TGG 0.463683 2_4:+16781075 Msa0318240:intron
ATTGTGGGGATTGAGGAGGC+TGG 0.483023 2_4:-16782011 Msa0318250:CDS
TCTAAACAGAAGTTGCTTCA+CGG 0.483164 2_4:+16780151 Msa0318240:intron
GAAACAACCAAAGGATTGAA+TGG 0.485329 2_4:-16780764 Msa0318250:intron
GGTGATGATTGTGGGGATTG+AGG 0.486082 2_4:-16782018 None:intergenic
GTCAAATACCAAAGCTCCAC+GGG 0.493113 2_4:+16780186 Msa0318240:intron
ATCCACAGTGGCAATTGCTA+AGG 0.496691 2_4:+16780840 Msa0318240:intron
TGCCAGGAAGCCACAAGAGC+AGG 0.498725 2_4:-16781925 Msa0318250:intron
ATTTGAAGCTGGCAAACAAA+AGG 0.504477 2_4:-16780578 Msa0318250:three_prime_UTR
TAGCAATTGCCACTGTGGAT+GGG 0.505041 2_4:-16780837 Msa0318250:CDS
CATGCGGGAGCCGAATATGC+AGG 0.506146 2_4:-16781134 Msa0318250:CDS
GCCACTGTGGATGGGTTTGG+AGG 0.506475 2_4:-16780829 Msa0318250:CDS
GCATGCCATGTGTTGTTCTA+CGG 0.512070 2_4:-16781043 Msa0318250:CDS
ACTTGCTGAGGATTTGAAGC+TGG 0.518502 2_4:-16780589 Msa0318250:three_prime_UTR
GTTTGGATGAAGAACTTGCC+AGG 0.528014 2_4:-16781941 Msa0318250:CDS
GTAGCTGGAGCTGAACGGGC+GGG 0.528045 2_4:-16781065 Msa0318250:CDS
ATAACTCACAACATTAAGAA+TGG 0.528983 2_4:+16780353 Msa0318240:intron
ACAAGGACACAGTTGCAGAT+AGG 0.535437 2_4:+16781107 Msa0318240:intron
TCCACAGTGGCAATTGCTAA+GGG 0.539116 2_4:+16780841 Msa0318240:intron
TCACCTTTCCTGAGACAAGT+TGG 0.540422 2_4:+16781973 Msa0318240:intron
CTGGCACAGGATAGTAAACA+AGG 0.544597 2_4:+16780662 Msa0318240:intron
AGCTTCAAATCCTCAGCAAG+TGG 0.546975 2_4:+16780591 Msa0318240:intron
ATCTTAAACTTCATTTCTAG+AGG 0.552203 2_4:+16780549 Msa0318240:intron
GGGTAACCGATACAAACCTC+TGG 0.554317 2_4:+16780643 Msa0318240:intron
CATGTGTTGTTCTACGGAGC+AGG 0.563360 2_4:-16781037 Msa0318250:intron
AAGCTTTAACTGCAGTCGCT+GGG 0.565168 2_4:-16780317 Msa0318250:three_prime_UTR
CAAATCCACGATATAGGATG+AGG 0.566067 2_4:-16780452 Msa0318250:three_prime_UTR
CCGATACAAACCTCTGGCAC+AGG 0.571298 2_4:+16780649 Msa0318240:intron
TGTTTACTATCCTGTGCCAG+AGG 0.575070 2_4:-16780659 Msa0318250:three_prime_UTR
ACAAAGAATAGCAAAGGAGG+TGG 0.579729 2_4:-16781789 Msa0318250:CDS
GTTTGCCTCATCCTATATCG+TGG 0.580688 2_4:+16780447 Msa0318240:intron
CCTGTGCCAGAGGTTTGTAT+CGG 0.580964 2_4:-16780649 Msa0318250:three_prime_UTR
CTGGAGTAGCTGGAGCTGAA+CGG 0.588173 2_4:-16781070 Msa0318250:CDS
CAGTCTGGCTTCCTGCAACA+AGG 0.591529 2_4:+16781090 Msa0318240:intron
ATTGTGGCTGCACTACATGC+GGG 0.591845 2_4:-16781149 Msa0318250:CDS
TTGTGGGGATTGAGGAGGCT+GGG 0.598027 2_4:-16782010 Msa0318250:CDS
GATTGTGGCTGCACTACATG+CGG 0.601362 2_4:-16781150 Msa0318250:CDS
CCCCTTAGCAATTGCCACTG+TGG 0.604599 2_4:-16780842 Msa0318250:CDS
TGTCAAATACCAAAGCTCCA+CGG 0.608889 2_4:+16780185 Msa0318240:intron
AGTAGCTGGAGCTGAACGGG+CGG 0.609376 2_4:-16781066 Msa0318250:CDS
AACAAACTATCCACTTGCTG+AGG 0.616071 2_4:-16780601 Msa0318250:three_prime_UTR
TGGCCAACTTGTCTCAGGAA+AGG 0.616864 2_4:-16781976 Msa0318250:CDS
GAAGTACATACCTGCTCTTG+TGG 0.622583 2_4:+16781915 Msa0318240:intron
TCGATACCAGCTTATCCGAA+AGG 0.623457 2_4:-16781739 Msa0318250:intron
TGAGAGACAAAGAATAGCAA+AGG 0.632363 2_4:-16781795 Msa0318250:CDS
CTGCTCCGTAGAACAACACA+TGG 0.637561 2_4:+16781038 Msa0318240:intron
GATGATTGTGGGGATTGAGG+AGG 0.640224 2_4:-16782015 Msa0318250:CDS
GAGACAAAGAATAGCAAAGG+AGG 0.650210 2_4:-16781792 Msa0318250:CDS
ATGCGGGAGCCGAATATGCA+GGG 0.664421 2_4:-16781133 Msa0318250:CDS
ATGCCAGAAGAAACAACCAA+AGG 0.672590 2_4:-16780773 Msa0318250:CDS
CCACAGTGGCAATTGCTAAG+GGG 0.680461 2_4:+16780842 Msa0318240:intron
GTCCAGTCTAGAGAAGATTG+TGG 0.689857 2_4:-16781165 Msa0318250:intron
TGGCACAGGATAGTAAACAA+GGG 0.717951 2_4:+16780663 Msa0318240:intron
ACCTCCAAACCCATCCACAG+TGG 0.757484 2_4:+16780828 Msa0318240:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATCAAAATTCTTTATTAAAT+AGG + chr2_4:16780640-16780659 Msa0318240:intron 10.0%
!! ATCAAAATTCTTTATTAAAT+AGG + chr2_4:16780640-16780659 Msa0318240:intron 10.0%
!! GTTGAATTGTATAATTATAA+AGG + chr2_4:16780616-16780635 Msa0318240:intron 15.0%
!!! TCTGATTTTTTTTTTTTAAG+TGG - chr2_4:16781158-16781177 Msa0318250:CDS 15.0%
!! GTTGAATTGTATAATTATAA+AGG + chr2_4:16780616-16780635 Msa0318240:intron 15.0%
!!! TCTGATTTTTTTTTTTTAAG+TGG - chr2_4:16781158-16781177 Msa0318250:CDS 15.0%
!! CAAAGAAAGATAATTCAATA+TGG + chr2_4:16780711-16780730 Msa0318240:intron 20.0%
!! CAAAGAAAGATAATTCAATA+TGG + chr2_4:16780711-16780730 Msa0318240:intron 20.0%
! GTGAGAATTGAAATGAATTA+TGG - chr2_4:16780473-16780492 Msa0318250:three_prime_UTR 25.0%
!! GCAAATAAATTGCAGTTTTA+AGG + chr2_4:16780684-16780703 Msa0318240:intron 25.0%
! GCATTTAACAACTTATCAAT+TGG - chr2_4:16780808-16780827 Msa0318250:CDS 25.0%
!!! TCTGTTGATGATAATTGATA+CGG + chr2_4:16781136-16781155 Msa0318240:intron 25.0%
! AAAATTACCATTCAATCCTT+TGG + chr2_4:16781325-16781344 Msa0318240:intron 25.0%
!!! TTCTTTTCTTTGAGTTTCTT+GGG + chr2_4:16781460-16781479 Msa0318240:intron 25.0%
!! ATCTTAAACTTCATTTCTAG+AGG + chr2_4:16781533-16781552 Msa0318240:intron 25.0%
!! CTAGAAATGAAGTTTAAGAT+AGG - chr2_4:16781533-16781552 Msa0318250:intron 25.0%
! AAATATCAACACGAAATGAT+AGG + chr2_4:16781594-16781613 Msa0318240:intron 25.0%
!! TATCATTTCGTGTTGATATT+TGG - chr2_4:16781593-16781612 Msa0318250:intron 25.0%
! ATAACTCACAACATTAAGAA+TGG + chr2_4:16781729-16781748 Msa0318240:intron 25.0%
! GTGAGAATTGAAATGAATTA+TGG - chr2_4:16780473-16780492 Msa0318250:three_prime_UTR 25.0%
!! GCAAATAAATTGCAGTTTTA+AGG + chr2_4:16780684-16780703 Msa0318240:intron 25.0%
! GCATTTAACAACTTATCAAT+TGG - chr2_4:16780808-16780827 Msa0318250:CDS 25.0%
!!! TCTGTTGATGATAATTGATA+CGG + chr2_4:16781136-16781155 Msa0318240:intron 25.0%
! AAAATTACCATTCAATCCTT+TGG + chr2_4:16781325-16781344 Msa0318240:intron 25.0%
!!! TTCTTTTCTTTGAGTTTCTT+GGG + chr2_4:16781460-16781479 Msa0318240:intron 25.0%
!! ATCTTAAACTTCATTTCTAG+AGG + chr2_4:16781533-16781552 Msa0318240:intron 25.0%
!! CTAGAAATGAAGTTTAAGAT+AGG - chr2_4:16781533-16781552 Msa0318250:intron 25.0%
! AAATATCAACACGAAATGAT+AGG + chr2_4:16781594-16781613 Msa0318240:intron 25.0%
!! TATCATTTCGTGTTGATATT+TGG - chr2_4:16781593-16781612 Msa0318250:intron 25.0%
! ATAACTCACAACATTAAGAA+TGG + chr2_4:16781729-16781748 Msa0318240:intron 25.0%
!!! CTTCACTATGTTTTTTCATG+AGG - chr2_4:16780226-16780245 Msa0318250:three_prime_UTR 30.0%
AGAGAATTGAACTAACCTTT+CGG + chr2_4:16780358-16780377 Msa0318240:intron 30.0%
CTGTAAAGAACAATGATCTT+GGG + chr2_4:16780526-16780545 Msa0318240:intron 30.0%
TCTGTAAAGAACAATGATCT+TGG + chr2_4:16780527-16780546 Msa0318240:intron 30.0%
ATAATTGTTGCAGATATCAG+CGG - chr2_4:16781105-16781124 Msa0318250:CDS 30.0%
CAACAAACATGTCAAACAAT+TGG + chr2_4:16781362-16781381 Msa0318240:intron 30.0%
! GTTTGACATGTTTGTTGAAT+AGG - chr2_4:16781365-16781384 Msa0318250:intron 30.0%
!! TCTTTTCTTTGAGTTTCTTG+GGG + chr2_4:16781459-16781478 Msa0318240:intron 30.0%
!! GTTCTTTTCTTTGAGTTTCT+TGG + chr2_4:16781461-16781480 Msa0318240:intron 30.0%
CATTAACAAATCCACGATAT+AGG - chr2_4:16781621-16781640 Msa0318250:intron 30.0%
!!! CTTCACTATGTTTTTTCATG+AGG - chr2_4:16780226-16780245 Msa0318250:three_prime_UTR 30.0%
AGAGAATTGAACTAACCTTT+CGG + chr2_4:16780358-16780377 Msa0318240:intron 30.0%
CTGTAAAGAACAATGATCTT+GGG + chr2_4:16780526-16780545 Msa0318240:intron 30.0%
TCTGTAAAGAACAATGATCT+TGG + chr2_4:16780527-16780546 Msa0318240:intron 30.0%
ATAATTGTTGCAGATATCAG+CGG - chr2_4:16781105-16781124 Msa0318250:CDS 30.0%
CAACAAACATGTCAAACAAT+TGG + chr2_4:16781362-16781381 Msa0318240:intron 30.0%
! GTTTGACATGTTTGTTGAAT+AGG - chr2_4:16781365-16781384 Msa0318250:intron 30.0%
!! TCTTTTCTTTGAGTTTCTTG+GGG + chr2_4:16781459-16781478 Msa0318240:intron 30.0%
!! GTTCTTTTCTTTGAGTTTCT+TGG + chr2_4:16781461-16781480 Msa0318240:intron 30.0%
CATTAACAAATCCACGATAT+AGG - chr2_4:16781621-16781640 Msa0318250:intron 30.0%
TGAGAGACAAAGAATAGCAA+AGG - chr2_4:16780284-16780303 Msa0318250:three_prime_UTR 35.0%
!! AAGCTTTAAGACAGAGTCAA+TGG + chr2_4:16780559-16780578 Msa0318240:intron 35.0%
TGTTCATACGCTCTTTCTTT+GGG + chr2_4:16780781-16780800 Msa0318240:intron 35.0%
ATGTTCATACGCTCTTTCTT+TGG + chr2_4:16780782-16780801 Msa0318240:intron 35.0%
TGGAAAATGAGTGATTGATC+TGG - chr2_4:16780828-16780847 Msa0318250:CDS 35.0%
AGAAGTTCGATGAACTTGTA+TGG - chr2_4:16781081-16781100 Msa0318250:CDS 35.0%
GAAGTTCGATGAACTTGTAT+GGG - chr2_4:16781082-16781101 Msa0318250:CDS 35.0%
!! AATCCTTTGGTTGTTTCTTC+TGG + chr2_4:16781312-16781331 Msa0318240:intron 35.0%
GAAACAACCAAAGGATTGAA+TGG - chr2_4:16781315-16781334 Msa0318250:intron 35.0%
! ATTTGAAGCTGGCAAACAAA+AGG - chr2_4:16781501-16781520 Msa0318250:intron 35.0%
!!! GTTGTGAGTTATTTTGACTG+CGG - chr2_4:16781737-16781756 Msa0318250:intron 35.0%
TCTAAACAGAAGTTGCTTCA+CGG + chr2_4:16781931-16781950 Msa0318240:intron 35.0%
TGAGAGACAAAGAATAGCAA+AGG - chr2_4:16780284-16780303 Msa0318250:three_prime_UTR 35.0%
!! AAGCTTTAAGACAGAGTCAA+TGG + chr2_4:16780559-16780578 Msa0318240:intron 35.0%
TGTTCATACGCTCTTTCTTT+GGG + chr2_4:16780781-16780800 Msa0318240:intron 35.0%
ATGTTCATACGCTCTTTCTT+TGG + chr2_4:16780782-16780801 Msa0318240:intron 35.0%
TGGAAAATGAGTGATTGATC+TGG - chr2_4:16780828-16780847 Msa0318250:CDS 35.0%
AGAAGTTCGATGAACTTGTA+TGG - chr2_4:16781081-16781100 Msa0318250:CDS 35.0%
GAAGTTCGATGAACTTGTAT+GGG - chr2_4:16781082-16781101 Msa0318250:CDS 35.0%
!! AATCCTTTGGTTGTTTCTTC+TGG + chr2_4:16781312-16781331 Msa0318240:intron 35.0%
GAAACAACCAAAGGATTGAA+TGG - chr2_4:16781315-16781334 Msa0318250:intron 35.0%
! ATTTGAAGCTGGCAAACAAA+AGG - chr2_4:16781501-16781520 Msa0318250:intron 35.0%
!!! GTTGTGAGTTATTTTGACTG+CGG - chr2_4:16781737-16781756 Msa0318250:intron 35.0%
TCTAAACAGAAGTTGCTTCA+CGG + chr2_4:16781931-16781950 Msa0318240:intron 35.0%
TTATATGGCCAACTTGTCTC+AGG - chr2_4:16780098-16780117 Msa0318250:three_prime_UTR 40.0%
! AAAGGTGATTGCTTCTGGTT+TGG - chr2_4:16780121-16780140 Msa0318250:three_prime_UTR 40.0%
CAGCAGAAGCTAGACAAAAT+AGG + chr2_4:16780266-16780285 Msa0318240:intron 40.0%
GAGACAAAGAATAGCAAAGG+AGG - chr2_4:16780287-16780306 Msa0318250:three_prime_UTR 40.0%
ACAAAGAATAGCAAAGGAGG+TGG - chr2_4:16780290-16780309 Msa0318250:three_prime_UTR 40.0%
AACTAACCTTTCGGATAAGC+TGG + chr2_4:16780349-16780368 Msa0318240:intron 40.0%
ATGCCAGAAGAAACAACCAA+AGG - chr2_4:16781306-16781325 Msa0318250:intron 40.0%
TGGCACAGGATAGTAAACAA+GGG + chr2_4:16781419-16781438 Msa0318240:intron 40.0%
! AACAAACTATCCACTTGCTG+AGG - chr2_4:16781478-16781497 Msa0318250:intron 40.0%
CAAATCCACGATATAGGATG+AGG - chr2_4:16781627-16781646 Msa0318250:intron 40.0%
! GATACGTGTGACTTTTGCTT+TGG - chr2_4:16781661-16781680 Msa0318250:intron 40.0%
!! CACGGGACATTTTTAACTCA+AGG + chr2_4:16781879-16781898 Msa0318240:intron 40.0%
CTTGAGTTAAAAATGTCCCG+TGG - chr2_4:16781877-16781896 Msa0318250:intron 40.0%
TGTCAAATACCAAAGCTCCA+CGG + chr2_4:16781897-16781916 Msa0318240:intron 40.0%
TTATATGGCCAACTTGTCTC+AGG - chr2_4:16780098-16780117 Msa0318250:three_prime_UTR 40.0%
! AAAGGTGATTGCTTCTGGTT+TGG - chr2_4:16780121-16780140 Msa0318250:three_prime_UTR 40.0%
CAGCAGAAGCTAGACAAAAT+AGG + chr2_4:16780266-16780285 Msa0318240:intron 40.0%
GAGACAAAGAATAGCAAAGG+AGG - chr2_4:16780287-16780306 Msa0318250:three_prime_UTR 40.0%
ACAAAGAATAGCAAAGGAGG+TGG - chr2_4:16780290-16780309 Msa0318250:three_prime_UTR 40.0%
AACTAACCTTTCGGATAAGC+TGG + chr2_4:16780349-16780368 Msa0318240:intron 40.0%
ATGCCAGAAGAAACAACCAA+AGG - chr2_4:16781306-16781325 Msa0318250:intron 40.0%
TGGCACAGGATAGTAAACAA+GGG + chr2_4:16781419-16781438 Msa0318240:intron 40.0%
! AACAAACTATCCACTTGCTG+AGG - chr2_4:16781478-16781497 Msa0318250:intron 40.0%
CAAATCCACGATATAGGATG+AGG - chr2_4:16781627-16781646 Msa0318250:intron 40.0%
! GATACGTGTGACTTTTGCTT+TGG - chr2_4:16781661-16781680 Msa0318250:intron 40.0%
!! CACGGGACATTTTTAACTCA+AGG + chr2_4:16781879-16781898 Msa0318240:intron 40.0%
CTTGAGTTAAAAATGTCCCG+TGG - chr2_4:16781877-16781896 Msa0318250:intron 40.0%
TGTCAAATACCAAAGCTCCA+CGG + chr2_4:16781897-16781916 Msa0318240:intron 40.0%
GAGGCTGGGCAAAGTTTATA+TGG - chr2_4:16780083-16780102 Msa0318250:three_prime_UTR 45.0%
TCACCTTTCCTGAGACAAGT+TGG + chr2_4:16780109-16780128 Msa0318240:intron 45.0%
TCAGGAAAGGTGATTGCTTC+TGG - chr2_4:16780116-16780135 Msa0318250:three_prime_UTR 45.0%
GTTTGGATGAAGAACTTGCC+AGG - chr2_4:16780138-16780157 Msa0318250:three_prime_UTR 45.0%
GAAGTACATACCTGCTCTTG+TGG + chr2_4:16780167-16780186 Msa0318240:intron 45.0%
TCGATACCAGCTTATCCGAA+AGG - chr2_4:16780340-16780359 Msa0318250:three_prime_UTR 45.0%
GTCCAGTCTAGAGAAGATTG+TGG - chr2_4:16780914-16780933 Msa0318250:intron 45.0%
AGCCACAATCTTCTCTAGAC+TGG + chr2_4:16780919-16780938 Msa0318240:intron 45.0%
GATAGGTAGCCCTGCATATT+CGG + chr2_4:16780958-16780977 Msa0318240:intron 45.0%
ACAAGGACACAGTTGCAGAT+AGG + chr2_4:16780975-16780994 Msa0318240:intron 45.0%
! GCATGCCATGTGTTGTTCTA+CGG - chr2_4:16781036-16781055 Msa0318250:intron 45.0%
!! AGCTCTAGATGTCAAACTGC+AGG + chr2_4:16781212-16781231 Msa0318240:intron 45.0%
TCCACAGTGGCAATTGCTAA+GGG + chr2_4:16781241-16781260 Msa0318240:intron 45.0%
ATCCACAGTGGCAATTGCTA+AGG + chr2_4:16781242-16781261 Msa0318240:intron 45.0%
TTAGCAATTGCCACTGTGGA+TGG - chr2_4:16781241-16781260 Msa0318250:intron 45.0%
TAGCAATTGCCACTGTGGAT+GGG - chr2_4:16781242-16781261 Msa0318250:intron 45.0%
CTGGCACAGGATAGTAAACA+AGG + chr2_4:16781420-16781439 Msa0318240:intron 45.0%
TGTTTACTATCCTGTGCCAG+AGG - chr2_4:16781420-16781439 Msa0318250:intron 45.0%
AGCTTCAAATCCTCAGCAAG+TGG + chr2_4:16781491-16781510 Msa0318240:intron 45.0%
! ACTTGCTGAGGATTTGAAGC+TGG - chr2_4:16781490-16781509 Msa0318250:intron 45.0%
TCTTCAGAGACAGTGTTTGC+TGG - chr2_4:16781558-16781577 Msa0318250:intron 45.0%
GTTTGCCTCATCCTATATCG+TGG + chr2_4:16781635-16781654 Msa0318240:intron 45.0%
! AAAGCTTTAACTGCAGTCGC+TGG - chr2_4:16781761-16781780 Msa0318250:CDS 45.0%
! AAGCTTTAACTGCAGTCGCT+GGG - chr2_4:16781762-16781781 Msa0318250:CDS 45.0%
AAAAATGTCCCGTGGAGCTT+TGG - chr2_4:16781885-16781904 Msa0318250:intron 45.0%
GTCAAATACCAAAGCTCCAC+GGG + chr2_4:16781896-16781915 Msa0318240:intron 45.0%
GAGGCTGGGCAAAGTTTATA+TGG - chr2_4:16780083-16780102 Msa0318250:three_prime_UTR 45.0%
TCACCTTTCCTGAGACAAGT+TGG + chr2_4:16780109-16780128 Msa0318240:intron 45.0%
TCAGGAAAGGTGATTGCTTC+TGG - chr2_4:16780116-16780135 Msa0318250:three_prime_UTR 45.0%
GTTTGGATGAAGAACTTGCC+AGG - chr2_4:16780138-16780157 Msa0318250:three_prime_UTR 45.0%
GAAGTACATACCTGCTCTTG+TGG + chr2_4:16780167-16780186 Msa0318240:intron 45.0%
TCGATACCAGCTTATCCGAA+AGG - chr2_4:16780340-16780359 Msa0318250:three_prime_UTR 45.0%
GTCCAGTCTAGAGAAGATTG+TGG - chr2_4:16780914-16780933 Msa0318250:intron 45.0%
AGCCACAATCTTCTCTAGAC+TGG + chr2_4:16780919-16780938 Msa0318240:intron 45.0%
GATAGGTAGCCCTGCATATT+CGG + chr2_4:16780958-16780977 Msa0318240:intron 45.0%
ACAAGGACACAGTTGCAGAT+AGG + chr2_4:16780975-16780994 Msa0318240:intron 45.0%
! GCATGCCATGTGTTGTTCTA+CGG - chr2_4:16781036-16781055 Msa0318250:intron 45.0%
!! AGCTCTAGATGTCAAACTGC+AGG + chr2_4:16781212-16781231 Msa0318240:intron 45.0%
TCCACAGTGGCAATTGCTAA+GGG + chr2_4:16781241-16781260 Msa0318240:intron 45.0%
ATCCACAGTGGCAATTGCTA+AGG + chr2_4:16781242-16781261 Msa0318240:intron 45.0%
TTAGCAATTGCCACTGTGGA+TGG - chr2_4:16781241-16781260 Msa0318250:intron 45.0%
TAGCAATTGCCACTGTGGAT+GGG - chr2_4:16781242-16781261 Msa0318250:intron 45.0%
CTGGCACAGGATAGTAAACA+AGG + chr2_4:16781420-16781439 Msa0318240:intron 45.0%
TGTTTACTATCCTGTGCCAG+AGG - chr2_4:16781420-16781439 Msa0318250:intron 45.0%
AGCTTCAAATCCTCAGCAAG+TGG + chr2_4:16781491-16781510 Msa0318240:intron 45.0%
! ACTTGCTGAGGATTTGAAGC+TGG - chr2_4:16781490-16781509 Msa0318250:intron 45.0%
TCTTCAGAGACAGTGTTTGC+TGG - chr2_4:16781558-16781577 Msa0318250:intron 45.0%
GTTTGCCTCATCCTATATCG+TGG + chr2_4:16781635-16781654 Msa0318240:intron 45.0%
! AAAGCTTTAACTGCAGTCGC+TGG - chr2_4:16781761-16781780 Msa0318250:CDS 45.0%
! AAGCTTTAACTGCAGTCGCT+GGG - chr2_4:16781762-16781781 Msa0318250:CDS 45.0%
AAAAATGTCCCGTGGAGCTT+TGG - chr2_4:16781885-16781904 Msa0318250:intron 45.0%
GTCAAATACCAAAGCTCCAC+GGG + chr2_4:16781896-16781915 Msa0318240:intron 45.0%
!! AAAAAAAAAAAAAAAAATCA+TGG - chr2_4:16780396-16780415 Msa0318250:three_prime_UTR 5.0%
!! AAAAAAAAAAAAAAAAATCA+TGG - chr2_4:16780396-16780415 Msa0318250:three_prime_UTR 5.0%
TGGCCAACTTGTCTCAGGAA+AGG - chr2_4:16780103-16780122 Msa0318250:three_prime_UTR 50.0%
GATTGTGGCTGCACTACATG+CGG - chr2_4:16780929-16780948 Msa0318250:intron 50.0%
ATTGTGGCTGCACTACATGC+GGG - chr2_4:16780930-16780949 Msa0318250:intron 50.0%
TGCAACTGTGTCCTTGTTGC+AGG - chr2_4:16780978-16780997 Msa0318250:intron 50.0%
CTGCTCCGTAGAACAACACA+TGG + chr2_4:16781044-16781063 Msa0318240:intron 50.0%
! CATGTGTTGTTCTACGGAGC+AGG - chr2_4:16781042-16781061 Msa0318250:CDS 50.0%
CCACAGTGGCAATTGCTAAG+GGG + chr2_4:16781240-16781259 Msa0318240:intron 50.0%
! ATTGCCACTGTGGATGGGTT+TGG - chr2_4:16781247-16781266 Msa0318250:intron 50.0%
CCTGTGCCAGAGGTTTGTAT+CGG - chr2_4:16781430-16781449 Msa0318250:intron 50.0%
GGGTAACCGATACAAACCTC+TGG + chr2_4:16781439-16781458 Msa0318240:intron 50.0%
TGGCCAACTTGTCTCAGGAA+AGG - chr2_4:16780103-16780122 Msa0318250:three_prime_UTR 50.0%
GATTGTGGCTGCACTACATG+CGG - chr2_4:16780929-16780948 Msa0318250:intron 50.0%
ATTGTGGCTGCACTACATGC+GGG - chr2_4:16780930-16780949 Msa0318250:intron 50.0%
TGCAACTGTGTCCTTGTTGC+AGG - chr2_4:16780978-16780997 Msa0318250:intron 50.0%
CTGCTCCGTAGAACAACACA+TGG + chr2_4:16781044-16781063 Msa0318240:intron 50.0%
! CATGTGTTGTTCTACGGAGC+AGG - chr2_4:16781042-16781061 Msa0318250:CDS 50.0%
CCACAGTGGCAATTGCTAAG+GGG + chr2_4:16781240-16781259 Msa0318240:intron 50.0%
! ATTGCCACTGTGGATGGGTT+TGG - chr2_4:16781247-16781266 Msa0318250:intron 50.0%
CCTGTGCCAGAGGTTTGTAT+CGG - chr2_4:16781430-16781449 Msa0318250:intron 50.0%
GGGTAACCGATACAAACCTC+TGG + chr2_4:16781439-16781458 Msa0318240:intron 50.0%
ATTGTGGGGATTGAGGAGGC+TGG - chr2_4:16780068-16780087 Msa0318250:three_prime_UTR 55.0%
TTGTGGGGATTGAGGAGGCT+GGG - chr2_4:16780069-16780088 Msa0318250:three_prime_UTR 55.0%
TACCTGCTCTTGTGGCTTCC+TGG + chr2_4:16780159-16780178 Msa0318240:intron 55.0%
CGCTCTTTCTTTGGGCGTTC+TGG + chr2_4:16780773-16780792 Msa0318240:intron 55.0%
ATGCGGGAGCCGAATATGCA+GGG - chr2_4:16780946-16780965 Msa0318250:intron 55.0%
! CAGTCTGGCTTCCTGCAACA+AGG + chr2_4:16780992-16781011 Msa0318240:intron 55.0%
CTTGTTGCAGGAAGCCAGAC+TGG - chr2_4:16780990-16781009 Msa0318250:intron 55.0%
CTGGAGTAGCTGGAGCTGAA+CGG - chr2_4:16781009-16781028 Msa0318250:intron 55.0%
TGGAGTAGCTGGAGCTGAAC+GGG - chr2_4:16781010-16781029 Msa0318250:intron 55.0%
CCCCTTAGCAATTGCCACTG+TGG - chr2_4:16781237-16781256 Msa0318250:intron 55.0%
ACCTCCAAACCCATCCACAG+TGG + chr2_4:16781254-16781273 Msa0318240:intron 55.0%
CCGATACAAACCTCTGGCAC+AGG + chr2_4:16781433-16781452 Msa0318240:intron 55.0%
ATTGTGGGGATTGAGGAGGC+TGG - chr2_4:16780068-16780087 Msa0318250:three_prime_UTR 55.0%
TTGTGGGGATTGAGGAGGCT+GGG - chr2_4:16780069-16780088 Msa0318250:three_prime_UTR 55.0%
TACCTGCTCTTGTGGCTTCC+TGG + chr2_4:16780159-16780178 Msa0318240:intron 55.0%
CGCTCTTTCTTTGGGCGTTC+TGG + chr2_4:16780773-16780792 Msa0318240:intron 55.0%
ATGCGGGAGCCGAATATGCA+GGG - chr2_4:16780946-16780965 Msa0318250:intron 55.0%
! CAGTCTGGCTTCCTGCAACA+AGG + chr2_4:16780992-16781011 Msa0318240:intron 55.0%
CTTGTTGCAGGAAGCCAGAC+TGG - chr2_4:16780990-16781009 Msa0318250:intron 55.0%
CTGGAGTAGCTGGAGCTGAA+CGG - chr2_4:16781009-16781028 Msa0318250:intron 55.0%
TGGAGTAGCTGGAGCTGAAC+GGG - chr2_4:16781010-16781029 Msa0318250:intron 55.0%
CCCCTTAGCAATTGCCACTG+TGG - chr2_4:16781237-16781256 Msa0318250:intron 55.0%
ACCTCCAAACCCATCCACAG+TGG + chr2_4:16781254-16781273 Msa0318240:intron 55.0%
CCGATACAAACCTCTGGCAC+AGG + chr2_4:16781433-16781452 Msa0318240:intron 55.0%
TGCCAGGAAGCCACAAGAGC+AGG - chr2_4:16780154-16780173 Msa0318250:three_prime_UTR 60.0%
CATGCGGGAGCCGAATATGC+AGG - chr2_4:16780945-16780964 Msa0318250:intron 60.0%
GGAAGCCAGACTGGAGTAGC+TGG - chr2_4:16780999-16781018 Msa0318250:intron 60.0%
CAGCTCCAGCTACTCCAGTC+TGG + chr2_4:16781007-16781026 Msa0318240:intron 60.0%
AGTAGCTGGAGCTGAACGGG+CGG - chr2_4:16781013-16781032 Msa0318250:intron 60.0%
! GCCACTGTGGATGGGTTTGG+AGG - chr2_4:16781250-16781269 Msa0318250:intron 60.0%
TGCCAGGAAGCCACAAGAGC+AGG - chr2_4:16780154-16780173 Msa0318250:three_prime_UTR 60.0%
CATGCGGGAGCCGAATATGC+AGG - chr2_4:16780945-16780964 Msa0318250:intron 60.0%
GGAAGCCAGACTGGAGTAGC+TGG - chr2_4:16780999-16781018 Msa0318250:intron 60.0%
CAGCTCCAGCTACTCCAGTC+TGG + chr2_4:16781007-16781026 Msa0318240:intron 60.0%
AGTAGCTGGAGCTGAACGGG+CGG - chr2_4:16781013-16781032 Msa0318250:intron 60.0%
! GCCACTGTGGATGGGTTTGG+AGG - chr2_4:16781250-16781269 Msa0318250:intron 60.0%
GTAGCTGGAGCTGAACGGGC+GGG - chr2_4:16781014-16781033 Msa0318250:intron 65.0%
GTAGCTGGAGCTGAACGGGC+GGG - chr2_4:16781014-16781033 Msa0318250:intron 65.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 16780065 16782036 16780065 ID=Msa0318250;Name=Msa0318250
chr2_4 mRNA 16780065 16782036 16780065 ID=Msa0318250-mRNA-1;Parent=Msa0318250;Name=Msa0318250-mRNA-1;_AED=0.36;_eAED=0.36;_QI=0|0.75|0.6|1|0.75|0.6|5|627|174
chr2_4 exon 16780065 16780688 16780065 ID=Msa0318250-mRNA-1:exon:6290;Parent=Msa0318250-mRNA-1
chr2_4 exon 16780765 16780885 16780765 ID=Msa0318250-mRNA-1:exon:6289;Parent=Msa0318250-mRNA-1
chr2_4 exon 16781038 16781181 16781038 ID=Msa0318250-mRNA-1:exon:6288;Parent=Msa0318250-mRNA-1
chr2_4 exon 16781740 16781891 16781740 ID=Msa0318250-mRNA-1:exon:6287;Parent=Msa0318250-mRNA-1
chr2_4 exon 16781926 16782036 16781926 ID=Msa0318250-mRNA-1:exon:6286;Parent=Msa0318250-mRNA-1
chr2_4 CDS 16781926 16782036 16781926 ID=Msa0318250-mRNA-1:cds;Parent=Msa0318250-mRNA-1
chr2_4 CDS 16781740 16781891 16781740 ID=Msa0318250-mRNA-1:cds;Parent=Msa0318250-mRNA-1
chr2_4 CDS 16781038 16781181 16781038 ID=Msa0318250-mRNA-1:cds;Parent=Msa0318250-mRNA-1
chr2_4 CDS 16780768 16780885 16780768 ID=Msa0318250-mRNA-1:cds;Parent=Msa0318250-mRNA-1
chr2_4 three_prime_UTR 16780765 16780767 16780765 ID=Msa0318250-mRNA-1:three_prime_utr;Parent=Msa0318250-mRNA-1
chr2_4 three_prime_UTR 16780065 16780688 16780065 ID=Msa0318250-mRNA-1:three_prime_utr;Parent=Msa0318250-mRNA-1
Gene Sequence

>Msa0318250

ATGATTGTGGGGATTGAGGAGGCTGGGCAAAGTTTATATGGCCAACTTGTCTCAGGAAAGGTGATTGCTTCTGGTTTGGATGAAGAACTTGCCAGGAAGCCACAAGAGCAGCTCATGCATGCATATACTTCACTATGTTTTTTCATGAGGTGCTTTGTATTTCTCCTATTTTGTCTAGCTTCTGCTGAGAGACAAAGAATAGCAAAGGAGGTGGCATCTGTGCTTAAGTTGAGTGTTGAGATCGATACCAGCTTATCCGAAAGTCTAGAGAAGATTGTGGCTGCACTACATGCGGGAGCCGAATATGCAGGGCTACCTATCTGCAACTGTGTCCTTGTTGCAGGAAGCCAGACTGGAGTAGCTGGAGCTGAACGGGCGGGCATGCCATGTGTTGTTCTACGGAGCAGTTTGACATCTAGAGCTGAGTTCCCCTTAGCAATTGCCACTGTGGATGGGTTTGGAGGTGCAGATCTGACTATTTCAAAATTACGCAGTCTATGCCAGAAGAAACAACCAAAGGATTGA

Protein sequence

>Msa0318250

MIVGIEEAGQSLYGQLVSGKVIASGLDEELARKPQEQLMHAYTSLCFFMRCFVFLLFCLASAERQRIAKEVASVLKLSVEIDTSLSESLEKIVAALHAGAEYAGLPICNCVLVAGSQTGVAGAERAGMPCVVLRSSLTSRAEFPLAIATVDGFGGADLTISKLRSLCQKKQPKD*