Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0317990 | CAI29267.1 | 98.352 | 182 | 3 | 0 | 1 | 182 | 1 | 182 | 5.06e-127 | 364 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0317990 | sp|Q940S5|COPZ1_ARATH | 75.706 | 177 | 43 | 0 | 6 | 182 | 1 | 177 | 2.34e-96 | 280 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0010490 | Msa0317990 | 0.802178 | 6.346861e-49 | -8.615850e-47 |
| Msa0020390 | Msa0317990 | 0.813523 | 2.451844e-51 | -8.615850e-47 |
| Msa0118540 | Msa0317990 | 0.802843 | 4.628079e-49 | -8.615850e-47 |
| Msa0183850 | Msa0317990 | 0.801979 | 6.972688e-49 | -8.615850e-47 |
| Msa0217290 | Msa0317990 | 0.819678 | 1.023586e-52 | -8.615850e-47 |
| Msa0257490 | Msa0317990 | 0.812823 | 3.492113e-51 | -8.615850e-47 |
| Msa0296790 | Msa0317990 | 0.812815 | 3.505445e-51 | -8.615850e-47 |
| Msa0296820 | Msa0317990 | 0.804626 | 1.973218e-49 | -8.615850e-47 |
| Msa0317970 | Msa0317990 | 0.818176 | 2.247325e-52 | -8.615850e-47 |
| Msa0317990 | Msa0382370 | 0.806635 | 7.473834e-50 | -8.615850e-47 |
| Msa0317990 | Msa0385500 | 0.801429 | 9.043411e-49 | -8.615850e-47 |
| Msa0317990 | Msa0445330 | 0.807882 | 4.068099e-50 | -8.615850e-47 |
| Msa0317990 | Msa0615580 | 0.804357 | 2.245805e-49 | -8.615850e-47 |
| Msa0317990 | Msa0672100 | 0.802972 | 4.353704e-49 | -8.615850e-47 |
| Msa0317990 | Msa0780930 | 0.812790 | 3.550249e-51 | -8.615850e-47 |
| Msa0317990 | Msa0826150 | 0.826818 | 2.201492e-54 | -8.615850e-47 |
| Msa0317990 | Msa0944200 | 0.819614 | 1.058808e-52 | -8.615850e-47 |
| Msa0317990 | Msa0944610 | 0.813279 | 2.773809e-51 | -8.615850e-47 |
| Msa0317990 | Msa1089450 | 0.805849 | 1.094163e-49 | -8.615850e-47 |
| Msa0317990 | Msa1274560 | 0.802377 | 5.774519e-49 | -8.615850e-47 |
| Msa0317990 | Msa1275110 | 0.814310 | 1.644162e-51 | -8.615850e-47 |
| Msa0317990 | Msa1296830 | 0.803362 | 3.614698e-49 | -8.615850e-47 |
| Msa0317990 | Msa1351540 | 0.804097 | 2.543688e-49 | -8.615850e-47 |
| Msa0317990 | Msa1352890 | 0.802315 | 5.946006e-49 | -8.615850e-47 |
| Msa0317990 | Msa1447890 | 0.804755 | 1.855064e-49 | -8.615850e-47 |
| Msa0317990 | Msa1454450 | 0.812324 | 4.490287e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0317990 | MtrunA17_Chr2g0291621 | 98.352 | 182 | 3 | 0 | 1 | 182 | 24 | 205 | 6.07e-131 | 365 |
| Msa0317990 | MtrunA17_Chr8g0342591 | 75.862 | 174 | 42 | 0 | 8 | 181 | 6 | 179 | 3.08e-93 | 269 |
| Msa0317990 | MtrunA17_Chr7g0216831 | 71.795 | 156 | 44 | 0 | 12 | 167 | 2 | 157 | 5.87e-81 | 238 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0317990 | AT1G60970.1 | 75.706 | 177 | 43 | 0 | 6 | 182 | 1 | 177 | 2.38e-97 | 280 |
| Msa0317990 | AT3G09800.1 | 70.166 | 181 | 51 | 1 | 1 | 181 | 1 | 178 | 7.83e-93 | 268 |
| Msa0317990 | AT3G09800.4 | 70.166 | 181 | 51 | 1 | 1 | 181 | 1 | 178 | 7.83e-93 | 268 |
| Msa0317990 | AT3G09800.5 | 70.166 | 181 | 51 | 1 | 1 | 181 | 1 | 178 | 7.83e-93 | 268 |
| Msa0317990 | AT3G09800.6 | 70.166 | 181 | 51 | 1 | 1 | 181 | 81 | 258 | 2.13e-91 | 267 |
| Msa0317990 | AT4G08520.1 | 72.093 | 172 | 48 | 0 | 10 | 181 | 9 | 180 | 3.19e-91 | 264 |
| Msa0317990 | AT3G09800.2 | 71.311 | 122 | 35 | 0 | 60 | 181 | 18 | 139 | 2.38e-61 | 187 |
| Msa0317990 | AT3G09800.3 | 71.311 | 122 | 35 | 0 | 60 | 181 | 18 | 139 | 2.38e-61 | 187 |
Find 47 sgRNAs with CRISPR-Local
Find 223 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATATAAAATTCATGAATTT+TGG | 0.115908 | 2_4:-16223647 | Msa0317990:three_prime_UTR |
| ACTTTCCCAGCTATAGTATT+TGG | 0.152147 | 2_4:+16224177 | None:intergenic |
| TGTGAAGAACATCCTTCTTT+TGG | 0.230451 | 2_4:-16225982 | Msa0317990:CDS |
| GATCTTCACTTCTTTGTTAC+TGG | 0.233863 | 2_4:-16225657 | Msa0317990:CDS |
| AAAAGCTTCCTTTGCACTAT+TGG | 0.246999 | 2_4:+16225908 | None:intergenic |
| TAAATGAACCACATGAAGTT+TGG | 0.308342 | 2_4:-16223967 | Msa0317990:exon |
| GGAAGTAATAGTACAGATTC+TGG | 0.313738 | 2_4:-16224153 | Msa0317990:CDS |
| ATTCAGTTGGCCTCCTGCTC+AGG | 0.331455 | 2_4:-16225581 | Msa0317990:intron |
| TGGAGCTCCTTTGTCTGAAC+AGG | 0.379095 | 2_4:-16224133 | Msa0317990:intron |
| TTCATGTGGTTCATTTAAGA+AGG | 0.405897 | 2_4:+16223973 | None:intergenic |
| ACTACTCCAAATACTATAGC+TGG | 0.418010 | 2_4:-16224183 | Msa0317990:CDS |
| AACATTGGTATTCAAGTTTG+AGG | 0.422417 | 2_4:+16223877 | None:intergenic |
| GAAGGAAGCACTGGAGAACT+TGG | 0.432743 | 2_4:-16225425 | Msa0317990:CDS |
| ATCGATGAAATTATTGATGC+AGG | 0.435159 | 2_4:-16225385 | Msa0317990:CDS |
| CTAAGTATTTCACAGATGAT+TGG | 0.437609 | 2_4:-16225935 | Msa0317990:CDS |
| TAACAAAGAAGTGAAGATCT+TGG | 0.449077 | 2_4:+16225661 | None:intergenic |
| CTCCATTGCCAAACTTCATG+TGG | 0.461464 | 2_4:+16223959 | None:intergenic |
| ATCTTCACTTCTTTGTTACT+GGG | 0.467745 | 2_4:-16225656 | Msa0317990:CDS |
| AGATTCTTAAAACCAAATAT+AGG | 0.467950 | 2_4:+16223915 | None:intergenic |
| AGAGAGAGAGATTACGAGCT+TGG | 0.468302 | 2_4:+16226884 | None:intergenic |
| AATACTATAGCTGGGAAAGT+TGG | 0.483190 | 2_4:-16224174 | Msa0317990:CDS |
| TATCTTATCCTCAGTTCTGC+AGG | 0.484498 | 2_4:-16225613 | Msa0317990:CDS |
| GCTTCCTTTGCACTATTGGT+TGG | 0.497397 | 2_4:+16225912 | None:intergenic |
| TATCAGAAAACAACCTGAGC+AGG | 0.503709 | 2_4:+16225568 | None:intergenic |
| GTCAAGCATTGGCCTCAGCT+AGG | 0.506234 | 2_4:-16224013 | Msa0317990:CDS |
| AGAAGGATGTTCTTCACAGA+AGG | 0.510757 | 2_4:+16225987 | None:intergenic |
| AGAGAGATTACGAGCTTGGA+AGG | 0.514127 | 2_4:+16226888 | None:intergenic |
| GCAGACACTAAGTCAAGCAT+TGG | 0.516098 | 2_4:-16224024 | Msa0317990:intron |
| TCAAGCATTGGCCTCAGCTA+GGG | 0.518417 | 2_4:-16224012 | Msa0317990:CDS |
| CTCACCTTCAGTGCGAGCAT+TGG | 0.533277 | 2_4:+16225854 | None:intergenic |
| TCCCATCAGAATCCAAAAGA+AGG | 0.535691 | 2_4:+16225970 | None:intergenic |
| CAGAGGCAATGTGGACAAGA+AGG | 0.539823 | 2_4:-16225443 | Msa0317990:CDS |
| TGTGGACAAGAAGGAAGCAC+TGG | 0.543071 | 2_4:-16225434 | Msa0317990:CDS |
| AAGACCAATGCTCGCACTGA+AGG | 0.548318 | 2_4:-16225858 | Msa0317990:intron |
| TTTCACAGCACAAGTAACAT+TGG | 0.559600 | 2_4:+16223862 | None:intergenic |
| TCATGTGGTTCATTTAAGAA+GGG | 0.563438 | 2_4:+16223974 | None:intergenic |
| CTACTCCAAATACTATAGCT+GGG | 0.575062 | 2_4:-16224182 | Msa0317990:CDS |
| AACCACATGAAGTTTGGCAA+TGG | 0.575566 | 2_4:-16223961 | Msa0317990:three_prime_UTR |
| TCGATGAAATTATTGATGCA+GGG | 0.579583 | 2_4:-16225384 | Msa0317990:intron |
| GAAGGATGTTCTTCACAGAA+GGG | 0.583930 | 2_4:+16225988 | None:intergenic |
| CAGCATACCTGTTCAGACAA+AGG | 0.599690 | 2_4:+16224126 | None:intergenic |
| TGCAAGATGTTCCCTAGCTG+AGG | 0.615227 | 2_4:+16224001 | None:intergenic |
| CAGAAAACAACCTGAGCAGG+AGG | 0.629118 | 2_4:+16225571 | None:intergenic |
| GAGCTTGGAAGGAGACATGA+CGG | 0.643917 | 2_4:+16226899 | None:intergenic |
| TTGGCCAACCAATAGTGCAA+AGG | 0.655463 | 2_4:-16225916 | Msa0317990:CDS |
| AGACATGACGGAGAAAGCGT+CGG | 0.655801 | 2_4:+16226911 | None:intergenic |
| GGATTCTGATGGGAGACGTG+TGG | 0.674441 | 2_4:-16225961 | Msa0317990:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATCTTTTCATTTAATAACTA+TGG | + | chr2_4:16225615-16225634 | None:intergenic | 15.0% |
| !! | ATTAATTAAACTCAGTTATT+TGG | - | chr2_4:16226487-16226506 | Msa0317990:intron | 15.0% |
| !! | TTAATTAAACTCAGTTATTT+GGG | - | chr2_4:16226488-16226507 | Msa0317990:intron | 15.0% |
| !!! | CATATAAAATTCATGAATTT+TGG | - | chr2_4:16226914-16226933 | Msa0317990:exon | 15.0% |
| !! | CAAAAAAAAAATGATAATCG+TGG | + | chr2_4:16223794-16223813 | None:intergenic | 20.0% |
| !!! | TTTTTGTGTGATTTTGATTT+TGG | - | chr2_4:16223899-16223918 | Msa0317990:three_prime_UTR | 20.0% |
| !!! | AATAATGGTTCTAAAAATGT+GGG | + | chr2_4:16224157-16224176 | None:intergenic | 20.0% |
| !!! | TAATAATGGTTCTAAAAATG+TGG | + | chr2_4:16224158-16224177 | None:intergenic | 20.0% |
| !! | CCTTTAAACTGTTATAATAA+TGG | + | chr2_4:16224172-16224191 | None:intergenic | 20.0% |
| !! | CCATTATTATAACAGTTTAA+AGG | - | chr2_4:16224169-16224188 | Msa0317990:CDS | 20.0% |
| !!! | TTTATTTTGTGAGAAGAATT+TGG | - | chr2_4:16224753-16224772 | Msa0317990:intron | 20.0% |
| !!! | GAAGAAGATAACTTTTATTA+TGG | + | chr2_4:16225224-16225243 | None:intergenic | 20.0% |
| !! | ATAAAAACAAAAGACACAAA+AGG | - | chr2_4:16225392-16225411 | Msa0317990:CDS | 20.0% |
| !! | AAATCATTAGAAAGAAAATC+AGG | - | chr2_4:16225432-16225451 | Msa0317990:CDS | 20.0% |
| !! | AATCATTAGAAAGAAAATCA+GGG | - | chr2_4:16225433-16225452 | Msa0317990:CDS | 20.0% |
| !!! | TTAGATCAAAACAATAGTTT+TGG | - | chr2_4:16225640-16225659 | Msa0317990:CDS | 20.0% |
| !! | TACAATTATTGAAATCACAA+TGG | + | chr2_4:16225922-16225941 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTATGCTATCGAA+GGG | + | chr2_4:16226468-16226487 | None:intergenic | 20.0% |
| !!! | ATTTTTTTTTATGCTATCGA+AGG | + | chr2_4:16226469-16226488 | None:intergenic | 20.0% |
| !!! | ACTTTTGTTTTTCCTATATT+TGG | - | chr2_4:16226634-16226653 | Msa0317990:intron | 20.0% |
| !! | AGATTCTTAAAACCAAATAT+AGG | + | chr2_4:16226649-16226668 | None:intergenic | 20.0% |
| !! | TGCAATATCATGAAATTTAA+CGG | + | chr2_4:16226785-16226804 | None:intergenic | 20.0% |
| !! | GAGTATTTATTTCAAATATC+AGG | + | chr2_4:16226838-16226857 | None:intergenic | 20.0% |
| ! | CAACAAGAAACATAAAATGT+TGG | + | chr2_4:16223991-16224010 | None:intergenic | 25.0% |
| !! | CAACATTTTATGTTTCTTGT+TGG | - | chr2_4:16223989-16224008 | Msa0317990:CDS | 25.0% |
| !!! | TTAGTAATAGCTCTAAATTG+TGG | - | chr2_4:16224049-16224068 | Msa0317990:intron | 25.0% |
| ! | ACCTAAAAAAACGCATATTA+CGG | + | chr2_4:16224094-16224113 | None:intergenic | 25.0% |
| ! | ATCTATAAGTATCTCTGTAT+AGG | + | chr2_4:16224258-16224277 | None:intergenic | 25.0% |
| !! | TTGTATTGTGTGTTATTGTT+AGG | - | chr2_4:16224543-16224562 | Msa0317990:intron | 25.0% |
| !! | ATAAAAAATACCTCTAGAGA+AGG | + | chr2_4:16224738-16224757 | None:intergenic | 25.0% |
| ! | TATCTATGTGTGATATTCAA+AGG | - | chr2_4:16225026-16225045 | Msa0317990:intron | 25.0% |
| ! | TCTTCCATTATTTGTTTGTT+AGG | - | chr2_4:16225239-16225258 | Msa0317990:intron | 25.0% |
| ! | AGAACCTAACAAACAAATAA+TGG | + | chr2_4:16225246-16225265 | None:intergenic | 25.0% |
| !!! | CTATTTGAATTTTGGAAGAA+AGG | + | chr2_4:16225290-16225309 | None:intergenic | 25.0% |
| ! | TCTTCCAAAATTCAAATAGT+AGG | - | chr2_4:16225291-16225310 | Msa0317990:intron | 25.0% |
| !! | ATTCAAATCTACACTGATTA+AGG | + | chr2_4:16225462-16225481 | None:intergenic | 25.0% |
| ! | CTTTCAAGAAGAGTTTATAA+AGG | + | chr2_4:16226059-16226078 | None:intergenic | 25.0% |
| ! | ATCAAAGGAAATGAATAAGA+AGG | + | chr2_4:16226161-16226180 | None:intergenic | 25.0% |
| !!! | ATTCATTTCCTTTGATTTGA+TGG | - | chr2_4:16226165-16226184 | Msa0317990:intron | 25.0% |
| ! | ATATGTATCCATCAAATCAA+AGG | + | chr2_4:16226176-16226195 | None:intergenic | 25.0% |
| !! | TTGATTTGATGGATACATAT+AGG | - | chr2_4:16226176-16226195 | Msa0317990:intron | 25.0% |
| !! | TGATTTGATGGATACATATA+GGG | - | chr2_4:16226177-16226196 | Msa0317990:intron | 25.0% |
| !! | TTCTCCTTATTTATTTGTCT+CGG | - | chr2_4:16226296-16226315 | Msa0317990:intron | 25.0% |
| ! | GAATAATACTGCACAAAATA+TGG | + | chr2_4:16226353-16226372 | None:intergenic | 25.0% |
| ! | TAAATGAACAAAAATGTCAC+AGG | + | chr2_4:16226757-16226776 | None:intergenic | 25.0% |
| ! | GCAATATCATGAAATTTAAC+GGG | + | chr2_4:16226784-16226803 | None:intergenic | 25.0% |
| !!! | AATTTTGGTTTATACTAGAG+AGG | - | chr2_4:16226929-16226948 | Msa0317990:five_prime_UTR | 25.0% |
| !!! | ATTTTGGTTTATACTAGAGA+GGG | - | chr2_4:16226930-16226949 | Msa0317990:five_prime_UTR | 25.0% |
| GCAAATGTTGAAGACTAAAT+CGG | + | chr2_4:16223764-16223783 | None:intergenic | 30.0% | |
| AATGTTGGATCAAACGAAAA+AGG | + | chr2_4:16223976-16223995 | None:intergenic | 30.0% | |
| TCTAAAAATGTGGGAAAATG+CGG | + | chr2_4:16224148-16224167 | None:intergenic | 30.0% | |
| ! | TGAAGATAAGAGATTTTGTG+AGG | - | chr2_4:16224497-16224516 | Msa0317990:intron | 30.0% |
| CTAAGTATTTCACAGATGAT+TGG | - | chr2_4:16224626-16224645 | Msa0317990:intron | 30.0% | |
| TTGTATATGACCTACTTTGA+TGG | - | chr2_4:16224811-16224830 | Msa0317990:intron | 30.0% | |
| TGTATATGACCTACTTTGAT+GGG | - | chr2_4:16224812-16224831 | Msa0317990:intron | 30.0% | |
| TAAAAACAACCCATCAAAGT+AGG | + | chr2_4:16224824-16224843 | None:intergenic | 30.0% | |
| TAACAAAGAAGTGAAGATCT+TGG | + | chr2_4:16224903-16224922 | None:intergenic | 30.0% | |
| ATCTTCACTTCTTTGTTACT+GGG | - | chr2_4:16224905-16224924 | Msa0317990:intron | 30.0% | |
| ATCGATGAAATTATTGATGC+AGG | - | chr2_4:16225176-16225195 | Msa0317990:intron | 30.0% | |
| TCGATGAAATTATTGATGCA+GGG | - | chr2_4:16225177-16225196 | Msa0317990:intron | 30.0% | |
| ! | AGCTCCTACTATTTGAATTT+TGG | + | chr2_4:16225298-16225317 | None:intergenic | 30.0% |
| AAAACAAAAGACACAAAAGG+TGG | - | chr2_4:16225395-16225414 | Msa0317990:CDS | 30.0% | |
| GAAAAAATTAGTGAAACCTC+AGG | + | chr2_4:16225497-16225516 | None:intergenic | 30.0% | |
| ! | CTCTTTGGAAGTTTGAATAA+TGG | - | chr2_4:16225688-16225707 | Msa0317990:CDS | 30.0% |
| ATTAACTCCATCCAAGATTT+AGG | + | chr2_4:16225805-16225824 | None:intergenic | 30.0% | |
| TCCTTAATTCTATTTCCTCT+TGG | - | chr2_4:16225836-16225855 | Msa0317990:intron | 30.0% | |
| ACCAAGAGGAAATAGAATTA+AGG | + | chr2_4:16225840-16225859 | None:intergenic | 30.0% | |
| ACAACAAAAAAGAAACCAAG+AGG | + | chr2_4:16225854-16225873 | None:intergenic | 30.0% | |
| !!! | TCTTGGTTTCTTTTTTGTTG+TGG | - | chr2_4:16225853-16225872 | Msa0317990:intron | 30.0% |
| !!! | CTTGGTTTCTTTTTTGTTGT+GGG | - | chr2_4:16225854-16225873 | Msa0317990:intron | 30.0% |
| TGCTGAAATTCAAATACAGT+GGG | + | chr2_4:16225948-16225967 | None:intergenic | 30.0% | |
| TTGCTGAAATTCAAATACAG+TGG | + | chr2_4:16225949-16225968 | None:intergenic | 30.0% | |
| AGAAGAGTTTATAAAGGTGA+AGG | + | chr2_4:16226053-16226072 | None:intergenic | 30.0% | |
| AAGAAGGAAGTTGAGAAAAA+AGG | + | chr2_4:16226145-16226164 | None:intergenic | 30.0% | |
| AATTGTGATAGAGAGGAATT+GGG | + | chr2_4:16226203-16226222 | None:intergenic | 30.0% | |
| TGAAAATGAGGTAAAAACCT+AGG | + | chr2_4:16226249-16226268 | None:intergenic | 30.0% | |
| GAAATATGAAGGTGAAAATG+AGG | + | chr2_4:16226261-16226280 | None:intergenic | 30.0% | |
| CAAAGAAGAGAGAAATATGA+AGG | + | chr2_4:16226272-16226291 | None:intergenic | 30.0% | |
| GATGAATATTTAGTGAGACT+GGG | + | chr2_4:16226327-16226346 | None:intergenic | 30.0% | |
| AGATGAATATTTAGTGAGAC+TGG | + | chr2_4:16226328-16226347 | None:intergenic | 30.0% | |
| TCATGTGGTTCATTTAAGAA+GGG | + | chr2_4:16226590-16226609 | None:intergenic | 30.0% | |
| TTCATGTGGTTCATTTAAGA+AGG | + | chr2_4:16226591-16226610 | None:intergenic | 30.0% | |
| TAAATGAACCACATGAAGTT+TGG | - | chr2_4:16226594-16226613 | Msa0317990:intron | 30.0% | |
| ! | AACATTGGTATTCAAGTTTG+AGG | + | chr2_4:16226687-16226706 | None:intergenic | 30.0% |
| !!! | TTTTGGTTTATACTAGAGAG+GGG | - | chr2_4:16226931-16226950 | Msa0317990:five_prime_UTR | 30.0% |
| ! | ATGCAGCAGTATTTAGCTTA+GGG | - | chr2_4:16223936-16223955 | Msa0317990:three_prime_UTR | 35.0% |
| !!! | GCCGTAATATGCGTTTTTTT+AGG | - | chr2_4:16224090-16224109 | Msa0317990:intron | 35.0% |
| !! | GTTTTCGAACCATTAGTTTG+TGG | - | chr2_4:16224383-16224402 | Msa0317990:intron | 35.0% |
| !! | AACCATTAGTTTGTGGAAGT+TGG | - | chr2_4:16224390-16224409 | Msa0317990:intron | 35.0% |
| !! | ACCATTAGTTTGTGGAAGTT+GGG | - | chr2_4:16224391-16224410 | Msa0317990:intron | 35.0% |
| ! | TCTTTTTGTTGAACCTTGCT+TGG | - | chr2_4:16224423-16224442 | Msa0317990:intron | 35.0% |
| ! | TTTTAGCACAAAACCAAGCA+AGG | + | chr2_4:16224439-16224458 | None:intergenic | 35.0% |
| !! | GATTTTGTGAGGTGTTTTTG+AGG | - | chr2_4:16224508-16224527 | Msa0317990:intron | 35.0% |
| ! | TGTGAAGAACATCCTTCTTT+TGG | - | chr2_4:16224579-16224598 | Msa0317990:intron | 35.0% |
| ! | ATCCTTCTTTTGGATTCTGA+TGG | - | chr2_4:16224589-16224608 | Msa0317990:intron | 35.0% |
| ! | TCCTTCTTTTGGATTCTGAT+GGG | - | chr2_4:16224590-16224609 | Msa0317990:intron | 35.0% |
| AAAAGCTTCCTTTGCACTAT+TGG | + | chr2_4:16224656-16224675 | None:intergenic | 35.0% | |
| !!! | TGATGGGTTGTTTTTATGTG+TGG | - | chr2_4:16224828-16224847 | Msa0317990:intron | 35.0% |
| GATCTTCACTTCTTTGTTAC+TGG | - | chr2_4:16224904-16224923 | Msa0317990:intron | 35.0% | |
| !!! | CAGGCATTTTTTGATTCAGT+TGG | - | chr2_4:16224967-16224986 | Msa0317990:intron | 35.0% |
| GAAGTCCTTGACAATATTAC+TGG | - | chr2_4:16225076-16225095 | Msa0317990:intron | 35.0% | |
| AGAAGCCAGTAATATTGTCA+AGG | + | chr2_4:16225084-16225103 | None:intergenic | 35.0% | |
| ATTGCGATCATCTAATTGCA+TGG | + | chr2_4:16225349-16225368 | None:intergenic | 35.0% | |
| TCCAAACTCTAAACCAATCA+GGG | + | chr2_4:16225573-16225592 | None:intergenic | 35.0% | |
| ATGGCAAATAATGAGATCAC+TGG | + | chr2_4:16225596-16225615 | None:intergenic | 35.0% | |
| !!! | ATAGTTTTGGATGAAGCACA+AGG | - | chr2_4:16225653-16225672 | Msa0317990:CDS | 35.0% |
| TAACTTAACCTTAGAAGGCA+TGG | + | chr2_4:16225723-16225742 | None:intergenic | 35.0% | |
| !! | TGCCTTCTAAGGTTAAGTTA+TGG | - | chr2_4:16225723-16225742 | Msa0317990:intron | 35.0% |
| GACCATAACTTAACCTTAGA+AGG | + | chr2_4:16225728-16225747 | None:intergenic | 35.0% | |
| ACCATGACTTAACCTTAGAA+GGG | - | chr2_4:16225775-16225794 | Msa0317990:intron | 35.0% | |
| ! | TTTTCTGGACAAATGCTGTT+TGG | + | chr2_4:16225979-16225998 | None:intergenic | 35.0% |
| ! | AGGTGAAGGTCTTTTAACAA+GGG | + | chr2_4:16226039-16226058 | None:intergenic | 35.0% |
| ! | AAGGTGAAGGTCTTTTAACA+AGG | + | chr2_4:16226040-16226059 | None:intergenic | 35.0% |
| TGTTTGAACGTTTATCTCTG+AGG | + | chr2_4:16226094-16226113 | None:intergenic | 35.0% | |
| CAATTGTGATAGAGAGGAAT+TGG | + | chr2_4:16226204-16226223 | None:intergenic | 35.0% | |
| CAGTAACAATTGTGATAGAG+AGG | + | chr2_4:16226210-16226229 | None:intergenic | 35.0% | |
| AACCTAGGAAATGAAAGTCT+CGG | + | chr2_4:16226234-16226253 | None:intergenic | 35.0% | |
| ATATTTAGTGAGACTGGGAA+GGG | + | chr2_4:16226322-16226341 | None:intergenic | 35.0% | |
| AATATTTAGTGAGACTGGGA+AGG | + | chr2_4:16226323-16226342 | None:intergenic | 35.0% | |
| ACTACTCCAAATACTATAGC+TGG | - | chr2_4:16226378-16226397 | Msa0317990:intron | 35.0% | |
| CTACTCCAAATACTATAGCT+GGG | - | chr2_4:16226379-16226398 | Msa0317990:intron | 35.0% | |
| ACTTTCCCAGCTATAGTATT+TGG | + | chr2_4:16226387-16226406 | None:intergenic | 35.0% | |
| AATACTATAGCTGGGAAAGT+TGG | - | chr2_4:16226387-16226406 | Msa0317990:intron | 35.0% | |
| GGAAGTAATAGTACAGATTC+TGG | - | chr2_4:16226408-16226427 | Msa0317990:intron | 35.0% | |
| ! | TTTTTATGCTATCGAAGGGA+AGG | + | chr2_4:16226464-16226483 | None:intergenic | 35.0% |
| TTTCACAGCACAAGTAACAT+TGG | + | chr2_4:16226702-16226721 | None:intergenic | 35.0% | |
| ! | CATGCAGCAGTATTTAGCTT+AGG | - | chr2_4:16223935-16223954 | Msa0317990:three_prime_UTR | 40.0% |
| GTTGGATCAAACGAAAAAGG+AGG | + | chr2_4:16223973-16223992 | None:intergenic | 40.0% | |
| AGAAAGTTTAGCCGAGTTCA+AGG | - | chr2_4:16224223-16224242 | Msa0317990:intron | 40.0% | |
| TGAGTCAACTCCTTACCAAT+TGG | - | chr2_4:16224337-16224356 | Msa0317990:intron | 40.0% | |
| !! | CCATTAGTTTGTGGAAGTTG+GGG | - | chr2_4:16224392-16224411 | Msa0317990:intron | 40.0% |
| GAAGGATGTTCTTCACAGAA+GGG | + | chr2_4:16224576-16224595 | None:intergenic | 40.0% | |
| AGAAGGATGTTCTTCACAGA+AGG | + | chr2_4:16224577-16224596 | None:intergenic | 40.0% | |
| TCCCATCAGAATCCAAAAGA+AGG | + | chr2_4:16224594-16224613 | None:intergenic | 40.0% | |
| !!! | GTTGTTTTTATGTGTGGCAG+CGG | - | chr2_4:16224834-16224853 | Msa0317990:intron | 40.0% |
| TATCTTATCCTCAGTTCTGC+AGG | - | chr2_4:16224948-16224967 | Msa0317990:intron | 40.0% | |
| AAAAAATGCCTGCAGAACTG+AGG | + | chr2_4:16224959-16224978 | None:intergenic | 40.0% | |
| TATCAGAAAACAACCTGAGC+AGG | + | chr2_4:16224996-16225015 | None:intergenic | 40.0% | |
| GTGTTATCAATCTGTCACCA+TGG | - | chr2_4:16225048-16225067 | Msa0317990:intron | 40.0% | |
| TCAATCTGTCACCATGGAAT+TGG | - | chr2_4:16225054-16225073 | Msa0317990:intron | 40.0% | |
| ! | TTGCCTCTGGAGGAAAAAAT+GGG | + | chr2_4:16225107-16225126 | None:intergenic | 40.0% |
| ! | ATTGCCTCTGGAGGAAAAAA+TGG | + | chr2_4:16225108-16225127 | None:intergenic | 40.0% |
| GAATACATGATACGTACCTG+AGG | - | chr2_4:16225478-16225497 | Msa0317990:intron | 40.0% | |
| CCAAACTCTAAACCAATCAG+GGG | + | chr2_4:16225572-16225591 | None:intergenic | 40.0% | |
| GTCCAAACTCTAAACCAATC+AGG | + | chr2_4:16225574-16225593 | None:intergenic | 40.0% | |
| GATGAAGCACAAGGTTACAT+GGG | - | chr2_4:16225662-16225681 | Msa0317990:CDS | 40.0% | |
| GACCATGACTTAACCTTAGA+AGG | - | chr2_4:16225774-16225793 | Msa0317990:intron | 40.0% | |
| CCATGACTTAACCTTAGAAG+GGG | - | chr2_4:16225776-16225795 | Msa0317990:intron | 40.0% | |
| ! | TCAGAGGGAAATGTCTTTTC+TGG | + | chr2_4:16225994-16226013 | None:intergenic | 40.0% |
| !! | ACAAGGGTTTTTAAGCGTGA+AGG | + | chr2_4:16226023-16226042 | None:intergenic | 40.0% |
| ACCTAGGAAATGAAAGTCTC+GGG | + | chr2_4:16226233-16226252 | None:intergenic | 40.0% | |
| AGGGCCGAGACAAATAAATA+AGG | + | chr2_4:16226303-16226322 | None:intergenic | 40.0% | |
| AACCACATGAAGTTTGGCAA+TGG | - | chr2_4:16226600-16226619 | Msa0317990:intron | 40.0% | |
| TGATCCCTCCTGTCAATTAT+GGG | - | chr2_4:16226859-16226878 | Msa0317990:intron | 40.0% | |
| TGTATGCACCCATAATTGAC+AGG | + | chr2_4:16226870-16226889 | None:intergenic | 40.0% | |
| GTCAATTATGGGTGCATACA+TGG | - | chr2_4:16226870-16226889 | Msa0317990:intron | 40.0% | |
| AGAGAGATTACGAGCTTGGA+AGG | + | chr2_4:16223676-16223695 | None:intergenic | 45.0% | |
| AGAGAGAGAGATTACGAGCT+TGG | + | chr2_4:16223680-16223699 | None:intergenic | 45.0% | |
| GTGGTCCTCAATTGCAATTG+TGG | - | chr2_4:16224068-16224087 | Msa0317990:intron | 45.0% | |
| TACGGCCACAATTGCAATTG+AGG | + | chr2_4:16224076-16224095 | None:intergenic | 45.0% | |
| GGCTCTATAAGCCTTGAACT+CGG | + | chr2_4:16224237-16224256 | None:intergenic | 45.0% | |
| CACATTAGGACTTCGTTGGT+GGG | + | chr2_4:16224283-16224302 | None:intergenic | 45.0% | |
| CACCAACGAAGTCCTAATGT+GGG | - | chr2_4:16224282-16224301 | Msa0317990:intron | 45.0% | |
| GTCAGTCAGTCCAATTGGTA+AGG | + | chr2_4:16224350-16224369 | None:intergenic | 45.0% | |
| CTGAAGTCAGTCAGTCCAAT+TGG | + | chr2_4:16224355-16224374 | None:intergenic | 45.0% | |
| CCCCAACTTCCACAAACTAA+TGG | + | chr2_4:16224395-16224414 | None:intergenic | 45.0% | |
| TTGGCCAACCAATAGTGCAA+AGG | - | chr2_4:16224645-16224664 | Msa0317990:intron | 45.0% | |
| GCTTCCTTTGCACTATTGGT+TGG | + | chr2_4:16224652-16224671 | None:intergenic | 45.0% | |
| GTCAAGGACTTCCAATTCCA+TGG | + | chr2_4:16225068-16225087 | None:intergenic | 45.0% | |
| !!! | TCTCCCATTTTTTCCTCCAG+AGG | - | chr2_4:16225101-16225120 | Msa0317990:intron | 45.0% |
| ! | TTTTTCCTCCAGAGGCAATG+TGG | - | chr2_4:16225109-16225128 | Msa0317990:intron | 45.0% |
| GCAGGGTATGTCATTCTCAT+AGG | - | chr2_4:16225194-16225213 | Msa0317990:intron | 45.0% | |
| !! | CCCCTGATTGGTTTAGAGTT+TGG | - | chr2_4:16225569-16225588 | Msa0317990:intron | 45.0% |
| GGATGAAGCACAAGGTTACA+TGG | - | chr2_4:16225661-16225680 | Msa0317990:CDS | 45.0% | |
| AGGTTACATGGGTGTCTCTT+TGG | - | chr2_4:16225673-16225692 | Msa0317990:CDS | 45.0% | |
| !! | CCCCTTCTAAGGTTAAGTCA+TGG | + | chr2_4:16225779-16225798 | None:intergenic | 45.0% |
| GATTTAGGTCACCCCTTCTA+AGG | + | chr2_4:16225790-16225809 | None:intergenic | 45.0% | |
| AGAAGGGGTGACCTAAATCT+TGG | - | chr2_4:16225791-16225810 | Msa0317990:intron | 45.0% | |
| GTGCTAGAACTATGGATGTG+CGG | + | chr2_4:16225890-16225909 | None:intergenic | 45.0% | |
| GAAATCACAATGGAGCAGCA+AGG | + | chr2_4:16225912-16225931 | None:intergenic | 45.0% | |
| GCGTGAAGGATAAGATCAGA+GGG | + | chr2_4:16226009-16226028 | None:intergenic | 45.0% | |
| AGCGTGAAGGATAAGATCAG+AGG | + | chr2_4:16226010-16226029 | None:intergenic | 45.0% | |
| CAGCATACCTGTTCAGACAA+AGG | + | chr2_4:16226438-16226457 | None:intergenic | 45.0% | |
| GCAGACACTAAGTCAAGCAT+TGG | - | chr2_4:16226537-16226556 | Msa0317990:intron | 45.0% | |
| CTCCATTGCCAAACTTCATG+TGG | + | chr2_4:16226605-16226624 | None:intergenic | 45.0% | |
| GTGATCCCTCCTGTCAATTA+TGG | - | chr2_4:16226858-16226877 | Msa0317990:intron | 45.0% | |
| TGCACCCATAATTGACAGGA+GGG | + | chr2_4:16226866-16226885 | None:intergenic | 45.0% | |
| ATGCACCCATAATTGACAGG+AGG | + | chr2_4:16226867-16226886 | None:intergenic | 45.0% | |
| ! | AGACATGACGGAGAAAGCGT+CGG | + | chr2_4:16223653-16223672 | None:intergenic | 50.0% |
| GAGCTTGGAAGGAGACATGA+CGG | + | chr2_4:16223665-16223684 | None:intergenic | 50.0% | |
| CGACATTGCAACCGCAATTG+TGG | - | chr2_4:16224122-16224141 | Msa0317990:intron | 50.0% | |
| GGAAAATGCGGCCACAATTG+CGG | + | chr2_4:16224136-16224155 | None:intergenic | 50.0% | |
| CCACATTAGGACTTCGTTGG+TGG | + | chr2_4:16224284-16224303 | None:intergenic | 50.0% | |
| CCACCAACGAAGTCCTAATG+TGG | - | chr2_4:16224281-16224300 | Msa0317990:intron | 50.0% | |
| TGCCCACATTAGGACTTCGT+TGG | + | chr2_4:16224287-16224306 | None:intergenic | 50.0% | |
| ! | GAGTTGACTCATACCCTGCA+AGG | + | chr2_4:16224328-16224347 | None:intergenic | 50.0% |
| AAGACCAATGCTCGCACTGA+AGG | - | chr2_4:16224703-16224722 | Msa0317990:intron | 50.0% | |
| GTGAGTGCTTCCTTCTCTAG+AGG | - | chr2_4:16224725-16224744 | Msa0317990:intron | 50.0% | |
| CAGAAAACAACCTGAGCAGG+AGG | + | chr2_4:16224993-16225012 | None:intergenic | 50.0% | |
| CTTCTTGTCCACATTGCCTC+TGG | + | chr2_4:16225120-16225139 | None:intergenic | 50.0% | |
| CAGAGGCAATGTGGACAAGA+AGG | - | chr2_4:16225118-16225137 | Msa0317990:intron | 50.0% | |
| ! | TGTGGACAAGAAGGAAGCAC+TGG | - | chr2_4:16225127-16225146 | Msa0317990:intron | 50.0% |
| !! | GAAGGAAGCACTGGAGAACT+TGG | - | chr2_4:16225136-16225155 | Msa0317990:intron | 50.0% |
| !! | ACCAATCAGGGGCATCTAAC+TGG | + | chr2_4:16225561-16225580 | None:intergenic | 50.0% |
| ! | GCTCTAAGCCATGCCTTCTA+AGG | - | chr2_4:16225712-16225731 | Msa0317990:intron | 50.0% |
| GGGGTGACCTAAATCTTGGA+TGG | - | chr2_4:16225795-16225814 | Msa0317990:intron | 50.0% | |
| ! | GCAGCAAGGTGCTAGAACTA+TGG | + | chr2_4:16225898-16225917 | None:intergenic | 50.0% |
| GCCCGAGACTTTCATTTCCT+AGG | - | chr2_4:16226229-16226248 | Msa0317990:intron | 50.0% | |
| TGGAGCTCCTTTGTCTGAAC+AGG | - | chr2_4:16226428-16226447 | Msa0317990:intron | 50.0% | |
| !! | TCAAGCATTGGCCTCAGCTA+GGG | - | chr2_4:16226549-16226568 | Msa0317990:intron | 50.0% |
| TGCAAGATGTTCCCTAGCTG+AGG | + | chr2_4:16226563-16226582 | None:intergenic | 50.0% | |
| CGAAGTCCTAATGTGGGCAG+CGG | - | chr2_4:16224288-16224307 | Msa0317990:intron | 55.0% | |
| GAAGTCCTAATGTGGGCAGC+GGG | - | chr2_4:16224289-16224308 | Msa0317990:intron | 55.0% | |
| AGCTGAACCTACGCCTTGCA+GGG | - | chr2_4:16224312-16224331 | Msa0317990:intron | 55.0% | |
| ACTCATACCCTGCAAGGCGT+AGG | + | chr2_4:16224322-16224341 | None:intergenic | 55.0% | |
| GGATTCTGATGGGAGACGTG+TGG | - | chr2_4:16224600-16224619 | Msa0317990:intron | 55.0% | |
| CTCACCTTCAGTGCGAGCAT+TGG | + | chr2_4:16224710-16224729 | None:intergenic | 55.0% | |
| ! | ATTCAGTTGGCCTCCTGCTC+AGG | - | chr2_4:16224980-16224999 | Msa0317990:intron | 55.0% |
| CTTGTCCACATTGCCTCTGG+AGG | + | chr2_4:16225117-16225136 | None:intergenic | 55.0% | |
| GCCAGTTAGATGCCCCTGAT+TGG | - | chr2_4:16225557-16225576 | Msa0317990:intron | 55.0% | |
| !! | GTCAAGCATTGGCCTCAGCT+AGG | - | chr2_4:16226548-16226567 | Msa0317990:intron | 55.0% |
| GAGCTGAACCTACGCCTTGC+AGG | - | chr2_4:16224311-16224330 | Msa0317990:intron | 60.0% | |
| CAGCTCCCGCTGCCCACATT+AGG | + | chr2_4:16224297-16224316 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 16223608 | 16226975 | 16223608 | ID=Msa0317990;Name=Msa0317990 |
| chr2_4 | mRNA | 16223608 | 16226975 | 16223608 | ID=Msa0317990-mRNA-1;Parent=Msa0317990;Name=Msa0317990-mRNA-1;_AED=0.13;_eAED=0.13;_QI=59|1|1|1|0.83|0.71|7|232|182 |
| chr2_4 | exon | 16223608 | 16223694 | 16223608 | ID=Msa0317990-mRNA-1:exon:6086;Parent=Msa0317990-mRNA-1 |
| chr2_4 | exon | 16223838 | 16224042 | 16223838 | ID=Msa0317990-mRNA-1:exon:6085;Parent=Msa0317990-mRNA-1 |
| chr2_4 | exon | 16224134 | 16224218 | 16224134 | ID=Msa0317990-mRNA-1:exon:6084;Parent=Msa0317990-mRNA-1 |
| chr2_4 | exon | 16225385 | 16225462 | 16225385 | ID=Msa0317990-mRNA-1:exon:6083;Parent=Msa0317990-mRNA-1 |
| chr2_4 | exon | 16225582 | 16225729 | 16225582 | ID=Msa0317990-mRNA-1:exon:6082;Parent=Msa0317990-mRNA-1 |
| chr2_4 | exon | 16225859 | 16226018 | 16225859 | ID=Msa0317990-mRNA-1:exon:6081;Parent=Msa0317990-mRNA-1 |
| chr2_4 | exon | 16226899 | 16226975 | 16226899 | ID=Msa0317990-mRNA-1:exon:6080;Parent=Msa0317990-mRNA-1 |
| chr2_4 | five_prime_UTR | 16226917 | 16226975 | 16226917 | ID=Msa0317990-mRNA-1:five_prime_utr;Parent=Msa0317990-mRNA-1 |
| chr2_4 | CDS | 16226899 | 16226916 | 16226899 | ID=Msa0317990-mRNA-1:cds;Parent=Msa0317990-mRNA-1 |
| chr2_4 | CDS | 16225859 | 16226018 | 16225859 | ID=Msa0317990-mRNA-1:cds;Parent=Msa0317990-mRNA-1 |
| chr2_4 | CDS | 16225582 | 16225729 | 16225582 | ID=Msa0317990-mRNA-1:cds;Parent=Msa0317990-mRNA-1 |
| chr2_4 | CDS | 16225385 | 16225462 | 16225385 | ID=Msa0317990-mRNA-1:cds;Parent=Msa0317990-mRNA-1 |
| chr2_4 | CDS | 16224134 | 16224218 | 16224134 | ID=Msa0317990-mRNA-1:cds;Parent=Msa0317990-mRNA-1 |
| chr2_4 | CDS | 16223983 | 16224042 | 16223983 | ID=Msa0317990-mRNA-1:cds;Parent=Msa0317990-mRNA-1 |
| chr2_4 | three_prime_UTR | 16223838 | 16223982 | 16223838 | ID=Msa0317990-mRNA-1:three_prime_utr;Parent=Msa0317990-mRNA-1 |
| chr2_4 | three_prime_UTR | 16223608 | 16223694 | 16223608 | ID=Msa0317990-mRNA-1:three_prime_utr;Parent=Msa0317990-mRNA-1 |
| Gene Sequence |
| Protein sequence |
