Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0327220 | KAG5244632.1 | 80.000 | 110 | 15 | 1 | 1 | 110 | 18 | 120 | 1.95e-49 | 168 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0327220 | sp|O48920|ARF_VIGUN | 79.091 | 110 | 16 | 1 | 1 | 110 | 18 | 120 | 2.14e-51 | 166 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0054820 | Msa0327220 | 0.817749 | 2.806660e-52 | -8.615850e-47 |
| Msa0095560 | Msa0327220 | 0.801378 | 9.263132e-49 | -8.615850e-47 |
| Msa0100160 | Msa0327220 | 0.825180 | 5.396184e-54 | -8.615850e-47 |
| Msa0116790 | Msa0327220 | 0.802575 | 5.257635e-49 | -8.615850e-47 |
| Msa0133720 | Msa0327220 | 0.809586 | 1.758467e-50 | -8.615850e-47 |
| Msa0225220 | Msa0327220 | 0.805328 | 1.407421e-49 | -8.615850e-47 |
| Msa0225640 | Msa0327220 | 0.809376 | 1.951481e-50 | -8.615850e-47 |
| Msa0243250 | Msa0327220 | 0.803688 | 3.094157e-49 | -8.615850e-47 |
| Msa0305700 | Msa0327220 | 0.807530 | 4.832037e-50 | -8.615850e-47 |
| Msa0327200 | Msa0327220 | 0.901633 | 2.198522e-78 | -8.615850e-47 |
| Msa0327220 | Msa0341540 | 0.822798 | 1.953487e-53 | -8.615850e-47 |
| Msa0327220 | Msa0342010 | 0.806471 | 8.093386e-50 | -8.615850e-47 |
| Msa0327220 | Msa0389910 | 0.800191 | 1.618439e-48 | -8.615850e-47 |
| Msa0327220 | Msa0397820 | 0.808570 | 2.902956e-50 | -8.615850e-47 |
| Msa0327220 | Msa0576680 | 0.805682 | 1.186548e-49 | -8.615850e-47 |
| Msa0327220 | Msa0773590 | 0.816270 | 6.029875e-52 | -8.615850e-47 |
| Msa0327220 | Msa0830510 | 0.800644 | 1.308371e-48 | -8.615850e-47 |
| Msa0327220 | Msa0900620 | 0.803954 | 2.724031e-49 | -8.615850e-47 |
| Msa0327220 | Msa0939000 | 0.804539 | 2.057526e-49 | -8.615850e-47 |
| Msa0327220 | Msa0975940 | 0.806091 | 9.733548e-50 | -8.615850e-47 |
| Msa0327220 | Msa1080960 | 0.807673 | 4.506637e-50 | -8.615850e-47 |
| Msa0327220 | Msa1188710 | 0.808955 | 2.401664e-50 | -8.615850e-47 |
| Msa0327220 | Msa1205370 | 0.821971 | 3.039138e-53 | -8.615850e-47 |
| Msa0327220 | Msa1250290 | 0.810611 | 1.057695e-50 | -8.615850e-47 |
| Msa0327220 | Msa1297290 | 0.810520 | 1.106644e-50 | -8.615850e-47 |
| Msa0327220 | Msa1320820 | 0.803175 | 3.952219e-49 | -8.615850e-47 |
| Msa0327220 | Msa1383230 | 0.821807 | 3.317946e-53 | -8.615850e-47 |
| Msa0327220 | Msa1385000 | 0.809068 | 2.271870e-50 | -8.615850e-47 |
| Msa0327220 | Msa1463900 | 0.805272 | 1.446202e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0327220 | MtrunA17_Chr1g0194261 | 79.091 | 110 | 16 | 1 | 1 | 110 | 18 | 120 | 1.68e-52 | 166 |
| Msa0327220 | MtrunA17_Chr6g0450081 | 79.091 | 110 | 16 | 1 | 1 | 110 | 18 | 120 | 1.70e-52 | 166 |
| Msa0327220 | MtrunA17_Chr7g0270301 | 79.091 | 110 | 16 | 1 | 1 | 110 | 18 | 120 | 1.73e-52 | 166 |
| Msa0327220 | MtrunA17_Chr5g0413451 | 79.091 | 110 | 16 | 1 | 1 | 110 | 18 | 120 | 1.87e-52 | 166 |
| Msa0327220 | MtrunA17_Chr5g0413441 | 79.091 | 110 | 16 | 1 | 1 | 110 | 18 | 120 | 1.87e-52 | 166 |
| Msa0327220 | MtrunA17_Chr1g0191731 | 91.765 | 85 | 7 | 0 | 103 | 187 | 185 | 269 | 7.54e-52 | 167 |
| Msa0327220 | MtrunA17_Chr5g0401761 | 76.415 | 106 | 18 | 1 | 1 | 106 | 18 | 116 | 3.03e-50 | 160 |
| Msa0327220 | MtrunA17_Chr5g0395631 | 53.636 | 110 | 44 | 2 | 1 | 110 | 18 | 120 | 3.08e-34 | 119 |
| Msa0327220 | MtrunA17_Chr4g0072861 | 55.455 | 110 | 40 | 3 | 2 | 110 | 19 | 120 | 2.44e-33 | 117 |
| Msa0327220 | MtrunA17_Chr4g0039591 | 52.727 | 110 | 45 | 1 | 1 | 110 | 18 | 120 | 1.14e-32 | 115 |
| Msa0327220 | MtrunA17_Chr5g0395641 | 49.091 | 110 | 51 | 2 | 1 | 110 | 18 | 122 | 4.58e-32 | 114 |
| Msa0327220 | MtrunA17_Chr1g0188111 | 48.649 | 111 | 46 | 2 | 2 | 110 | 19 | 120 | 3.03e-27 | 101 |
| Msa0327220 | MtrunA17_Chr5g0395651 | 66.667 | 60 | 20 | 0 | 3 | 62 | 20 | 79 | 1.83e-23 | 88.6 |
| Msa0327220 | MtrunA17_Chr8g0373271 | 42.056 | 107 | 53 | 4 | 1 | 106 | 17 | 115 | 1.21e-17 | 76.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0327220 | AT1G10630.1 | 79.091 | 110 | 16 | 1 | 1 | 110 | 18 | 120 | 2.03e-52 | 166 |
| Msa0327220 | AT1G10630.2 | 79.091 | 110 | 16 | 1 | 1 | 110 | 18 | 120 | 2.03e-52 | 166 |
| Msa0327220 | AT1G23490.1 | 79.091 | 110 | 16 | 1 | 1 | 110 | 18 | 120 | 2.39e-52 | 166 |
| Msa0327220 | AT1G70490.2 | 79.091 | 110 | 16 | 1 | 1 | 110 | 18 | 120 | 2.39e-52 | 166 |
| Msa0327220 | AT1G70490.7 | 79.091 | 110 | 16 | 1 | 1 | 110 | 18 | 120 | 2.39e-52 | 166 |
| Msa0327220 | AT1G70490.4 | 79.091 | 110 | 16 | 1 | 1 | 110 | 18 | 120 | 2.39e-52 | 166 |
| Msa0327220 | AT1G70490.3 | 79.091 | 110 | 16 | 1 | 1 | 110 | 18 | 120 | 2.39e-52 | 166 |
| Msa0327220 | AT1G70490.1 | 79.091 | 110 | 16 | 1 | 1 | 110 | 18 | 120 | 2.39e-52 | 166 |
| Msa0327220 | AT1G70490.6 | 79.091 | 110 | 16 | 1 | 1 | 110 | 18 | 120 | 2.39e-52 | 166 |
| Msa0327220 | AT1G70490.5 | 79.091 | 110 | 16 | 1 | 1 | 110 | 18 | 120 | 2.39e-52 | 166 |
| Msa0327220 | AT3G62290.3 | 79.091 | 110 | 16 | 1 | 1 | 110 | 18 | 120 | 2.47e-52 | 166 |
| Msa0327220 | AT3G62290.1 | 79.091 | 110 | 16 | 1 | 1 | 110 | 18 | 120 | 2.47e-52 | 166 |
| Msa0327220 | AT3G62290.2 | 79.091 | 110 | 16 | 1 | 1 | 110 | 18 | 120 | 2.47e-52 | 166 |
| Msa0327220 | AT2G47170.2 | 79.091 | 110 | 16 | 1 | 1 | 110 | 18 | 120 | 2.56e-52 | 166 |
| Msa0327220 | AT2G47170.1 | 79.091 | 110 | 16 | 1 | 1 | 110 | 18 | 120 | 2.56e-52 | 166 |
| Msa0327220 | AT2G47170.3 | 79.091 | 110 | 16 | 1 | 1 | 110 | 18 | 120 | 2.56e-52 | 166 |
| Msa0327220 | AT5G14670.2 | 79.091 | 110 | 16 | 1 | 1 | 110 | 18 | 120 | 2.58e-52 | 166 |
| Msa0327220 | AT5G14670.3 | 79.091 | 110 | 16 | 1 | 1 | 110 | 18 | 120 | 2.58e-52 | 166 |
| Msa0327220 | AT5G14670.1 | 79.091 | 110 | 16 | 1 | 1 | 110 | 18 | 120 | 4.59e-52 | 165 |
| Msa0327220 | AT2G15310.1 | 62.264 | 106 | 33 | 1 | 1 | 106 | 18 | 116 | 1.34e-38 | 131 |
| Msa0327220 | AT3G03120.2 | 52.727 | 110 | 45 | 1 | 1 | 110 | 18 | 120 | 1.97e-33 | 116 |
| Msa0327220 | AT5G17060.2 | 53.211 | 109 | 43 | 3 | 1 | 109 | 18 | 118 | 6.64e-33 | 116 |
| Msa0327220 | AT5G17060.1 | 53.211 | 109 | 43 | 3 | 1 | 109 | 18 | 118 | 6.64e-33 | 116 |
| Msa0327220 | AT3G03120.1 | 52.727 | 110 | 45 | 1 | 1 | 110 | 18 | 120 | 1.85e-32 | 115 |
| Msa0327220 | AT2G24765.2 | 52.727 | 110 | 43 | 3 | 2 | 110 | 19 | 120 | 1.15e-31 | 111 |
| Msa0327220 | AT2G24765.1 | 52.727 | 110 | 43 | 3 | 2 | 110 | 19 | 120 | 3.33e-31 | 112 |
| Msa0327220 | AT3G22950.1 | 49.550 | 111 | 45 | 2 | 2 | 110 | 19 | 120 | 1.27e-27 | 102 |
| Msa0327220 | AT3G22950.2 | 49.550 | 111 | 45 | 2 | 2 | 110 | 19 | 120 | 1.27e-27 | 102 |
| Msa0327220 | AT1G02430.2 | 44.660 | 103 | 51 | 3 | 2 | 103 | 19 | 116 | 7.25e-22 | 87.4 |
| Msa0327220 | AT1G02430.1 | 44.660 | 103 | 51 | 3 | 2 | 103 | 19 | 116 | 1.53e-21 | 87.4 |
| Msa0327220 | AT3G05250.3 | 48.864 | 88 | 40 | 1 | 102 | 184 | 122 | 209 | 4.23e-19 | 81.3 |
| Msa0327220 | AT3G05250.2 | 48.864 | 88 | 40 | 1 | 102 | 184 | 122 | 209 | 4.23e-19 | 81.3 |
| Msa0327220 | AT3G05250.1 | 48.864 | 88 | 40 | 1 | 102 | 184 | 191 | 278 | 1.08e-18 | 81.6 |
| Msa0327220 | AT1G02440.1 | 39.806 | 103 | 56 | 2 | 2 | 103 | 19 | 116 | 1.08e-18 | 79.7 |
| Msa0327220 | AT2G18390.1 | 42.056 | 107 | 53 | 4 | 1 | 106 | 17 | 115 | 2.33e-17 | 76.3 |
| Msa0327220 | AT1G02440.2 | 47.273 | 55 | 28 | 1 | 2 | 55 | 19 | 73 | 1.29e-12 | 62.0 |
Find 55 sgRNAs with CRISPR-Local
Find 240 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTCAACTATTCCTTGCTTC+AGG | 0.313766 | 2_4:-38899246 | Msa0327220:CDS |
| TAAATCAGCTAGGCCTTTCC+TGG | 0.324763 | 2_4:-38899298 | Msa0327220:CDS |
| GCGGTTTATATTCAACGATT+AGG | 0.330129 | 2_4:-38899201 | Msa0327220:CDS |
| GTCACCACCATTCCTACTAT+TGG | 0.339573 | 2_4:-38900785 | Msa0327220:intron |
| AGAACATTAGCTTCACTGTT+TGG | 0.346877 | 2_4:-38899974 | Msa0327220:CDS |
| GAACATTAGCTTCACTGTTT+GGG | 0.346980 | 2_4:-38899973 | Msa0327220:CDS |
| AGCTTCACTGTTTGGGATGT+TGG | 0.348779 | 2_4:-38899966 | Msa0327220:CDS |
| CAGTCGGTTATTTGCGAAGA+AGG | 0.396684 | 2_4:-38900885 | Msa0327220:five_prime_UTR |
| TCCACAAGGGAAAGACAAAA+AGG | 0.398388 | 2_4:+38899863 | None:intergenic |
| CGATTAGGATGGAGCTCACC+AGG | 0.401263 | 2_4:-38899186 | Msa0327220:CDS |
| TGATGTTTCTCAAAATGAAT+TGG | 0.413515 | 2_4:-38899154 | Msa0327220:CDS |
| ACTATTCCTTGCTTCAGGAT+TGG | 0.433302 | 2_4:-38899241 | Msa0327220:CDS |
| AATCTCATACACAAATTTGT+CGG | 0.438859 | 2_4:+38899266 | None:intergenic |
| TTCACTGTTTGGGATGTTGG+AGG | 0.449444 | 2_4:-38899963 | Msa0327220:CDS |
| CAAGGAAGTGAAGGAGAAAA+CGG | 0.456890 | 2_4:-38900930 | Msa0327220:five_prime_UTR |
| TTGAATAAAATACCTTGTCC+TGG | 0.462109 | 2_4:+38899940 | None:intergenic |
| TTGAAATTTAGGTTTGATCA+AGG | 0.476869 | 2_4:-38900948 | Msa0327220:intron |
| TCGGTTCTTGCTCCCAGGAA+AGG | 0.483050 | 2_4:+38899285 | None:intergenic |
| AAGGAAGTGAAGGAGAAAAC+GGG | 0.483308 | 2_4:-38900929 | Msa0327220:five_prime_UTR |
| TGTTTGGGATGTTGGAGGCC+AGG | 0.484783 | 2_4:-38899958 | Msa0327220:CDS |
| CATCCTATGTAGCTCATCTC+TGG | 0.489228 | 2_4:+38899791 | None:intergenic |
| TTGTCGTTGACAGCAATGAC+AGG | 0.500098 | 2_4:-38899830 | Msa0327220:CDS |
| TCATCAAATATGTACAGGTA+TGG | 0.500375 | 2_4:+38899111 | None:intergenic |
| ATTCTCTACAAGCTCAAGCT+TGG | 0.503263 | 2_4:-38900815 | Msa0327220:CDS |
| AGGTTTGATCAAGGAAGTGA+AGG | 0.505738 | 2_4:-38900939 | Msa0327220:five_prime_UTR |
| TTTATATTCAACGATTAGGA+TGG | 0.507524 | 2_4:-38899197 | Msa0327220:CDS |
| ATTTGTCGGTTCTTGCTCCC+AGG | 0.509474 | 2_4:+38899280 | None:intergenic |
| CCGAGAAACTTACCAATAGT+AGG | 0.510028 | 2_4:+38900773 | None:intergenic |
| AGTCATCATCAAATATGTAC+AGG | 0.530474 | 2_4:+38899106 | None:intergenic |
| AAGCTTGAGCTTGTAGAGAA+TGG | 0.532263 | 2_4:+38900817 | None:intergenic |
| AAACTTACCAATAGTAGGAA+TGG | 0.549558 | 2_4:+38900778 | None:intergenic |
| AGGCCAGAGATGAGCTACAT+AGG | 0.552666 | 2_4:-38899794 | Msa0327220:CDS |
| GAAGGAAATGCGAATTCTGA+TGG | 0.554686 | 2_4:-38900867 | Msa0327220:exon |
| ATGGTTGGTCTCGATGCAGC+TGG | 0.564897 | 2_4:-38900848 | Msa0327220:CDS |
| CATTCACGAAGCTGTTCAGT+CGG | 0.566942 | 2_4:-38900901 | Msa0327220:five_prime_UTR |
| TCGCAAAGACAGAGAGAGAA+GGG | 0.572355 | 2_4:+38901333 | None:intergenic |
| GAAATGCGAATTCTGATGGT+TGG | 0.586975 | 2_4:-38900863 | Msa0327220:CDS |
| TGACAGGGATAGAGTTGTTG+AGG | 0.602509 | 2_4:-38899814 | Msa0327220:CDS |
| GGATGTTGGAGGCCAGGACA+AGG | 0.602549 | 2_4:-38899952 | Msa0327220:intron |
| CAATATCCAATCCTGAAGCA+AGG | 0.603049 | 2_4:+38899235 | None:intergenic |
| ATCGCAAAGACAGAGAGAGA+AGG | 0.609461 | 2_4:+38901332 | None:intergenic |
| ATATTTGATGATGACTCTGA+TGG | 0.611424 | 2_4:-38899099 | Msa0327220:CDS |
| AAATCAGCTAGGCCTTTCCT+GGG | 0.618873 | 2_4:-38899297 | Msa0327220:CDS |
| CTTACCAATAGTAGGAATGG+TGG | 0.621045 | 2_4:+38900781 | None:intergenic |
| TGTCAGTCTCTAAATCAGCT+AGG | 0.625702 | 2_4:-38899308 | Msa0327220:CDS |
| GGATATTGAAGCTTATGATG+CGG | 0.631103 | 2_4:-38899220 | Msa0327220:CDS |
| TGTCGTTGACAGCAATGACA+GGG | 0.631238 | 2_4:-38899829 | Msa0327220:CDS |
| AGGGTTCAATGTGGAGACTG+TGG | 0.633133 | 2_4:-38900003 | Msa0327220:CDS |
| GCTACATAGGATGTTGAATG+AGG | 0.633182 | 2_4:-38899781 | Msa0327220:intron |
| GATTAGGATGGAGCTCACCA+GGG | 0.636076 | 2_4:-38899185 | Msa0327220:CDS |
| CTTGAGCTTGTAGAGAATGG+TGG | 0.640954 | 2_4:+38900820 | None:intergenic |
| ACAAATATAAGACCTCCACA+AGG | 0.671284 | 2_4:+38899849 | None:intergenic |
| ATTAGGATGGAGCTCACCAG+GGG | 0.691130 | 2_4:-38899184 | Msa0327220:CDS |
| CAAATATAAGACCTCCACAA+GGG | 0.698326 | 2_4:+38899850 | None:intergenic |
| AGGAAGTGAAGGAGAAAACG+GGG | 0.760741 | 2_4:-38900928 | Msa0327220:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTATTTTATATTTTAATTT+AGG | - | chr2_4:38900412-38900431 | Msa0327220:intron | 0.0% |
| !!! | TTATTTTATATTTTAATTTA+GGG | - | chr2_4:38900413-38900432 | Msa0327220:intron | 0.0% |
| !!! | TTTATTTTATATTTTAATTT+AGG | - | chr2_4:38900412-38900431 | Msa0327220:intron | 0.0% |
| !!! | TTATTTTATATTTTAATTTA+GGG | - | chr2_4:38900413-38900432 | Msa0327220:intron | 0.0% |
| !!! | TATGAATAATGTTTATGTTT+TGG | - | chr2_4:38899442-38899461 | Msa0327220:intron | 15.0% |
| !!! | TGAAATTTTGATTGAAATTT+AGG | - | chr2_4:38899476-38899495 | Msa0327220:intron | 15.0% |
| !! | GATTTCATTGTTAAATATAA+AGG | + | chr2_4:38900055-38900074 | None:intergenic | 15.0% |
| !!! | ATGTTTATTTTAAACTTGAT+GGG | - | chr2_4:38900281-38900300 | Msa0327220:intron | 15.0% |
| !!! | TATGAATAATGTTTATGTTT+TGG | - | chr2_4:38899442-38899461 | Msa0327220:intron | 15.0% |
| !!! | TGAAATTTTGATTGAAATTT+AGG | - | chr2_4:38899476-38899495 | Msa0327220:intron | 15.0% |
| !! | GATTTCATTGTTAAATATAA+AGG | + | chr2_4:38900055-38900074 | None:intergenic | 15.0% |
| !!! | ATGTTTATTTTAAACTTGAT+GGG | - | chr2_4:38900281-38900300 | Msa0327220:intron | 15.0% |
| !! | CAATATATGACATAAAGTTT+GGG | + | chr2_4:38900077-38900096 | None:intergenic | 20.0% |
| !! | ACAATATATGACATAAAGTT+TGG | + | chr2_4:38900078-38900097 | None:intergenic | 20.0% |
| !!! | CATCAAGTTTAAAATAAACA+TGG | + | chr2_4:38900282-38900301 | None:intergenic | 20.0% |
| !!! | CATGTTTATTTTAAACTTGA+TGG | - | chr2_4:38900280-38900299 | Msa0327220:intron | 20.0% |
| !!! | TACTTTTCTTATATTCAGTT+TGG | - | chr2_4:38900677-38900696 | Msa0327220:intron | 20.0% |
| !! | CAATATATGACATAAAGTTT+GGG | + | chr2_4:38900077-38900096 | None:intergenic | 20.0% |
| !! | ACAATATATGACATAAAGTT+TGG | + | chr2_4:38900078-38900097 | None:intergenic | 20.0% |
| !!! | CATCAAGTTTAAAATAAACA+TGG | + | chr2_4:38900282-38900301 | None:intergenic | 20.0% |
| !!! | CATGTTTATTTTAAACTTGA+TGG | - | chr2_4:38900280-38900299 | Msa0327220:intron | 20.0% |
| !!! | TACTTTTCTTATATTCAGTT+TGG | - | chr2_4:38900677-38900696 | Msa0327220:intron | 20.0% |
| !!! | ATGTATTAGCGTTTTGATTT+AGG | - | chr2_4:38899395-38899414 | Msa0327220:intron | 25.0% |
| !! | TTGAAATTTAGGTTTGATCA+AGG | - | chr2_4:38899487-38899506 | Msa0327220:intron | 25.0% |
| !!! | AATGTATGTATTGATTGCTT+TGG | - | chr2_4:38899926-38899945 | Msa0327220:intron | 25.0% |
| ! | ACAACTATAATGACTTAGTT+TGG | - | chr2_4:38900139-38900158 | Msa0327220:intron | 25.0% |
| !! | ATAATGACTTAGTTTGGATT+AGG | - | chr2_4:38900145-38900164 | Msa0327220:intron | 25.0% |
| ! | TCTCAATTGAAATATGCATT+TGG | - | chr2_4:38900186-38900205 | Msa0327220:intron | 25.0% |
| ! | TAAACATGGATGAAATTACA+TGG | + | chr2_4:38900268-38900287 | None:intergenic | 25.0% |
| !!! | TTTTAATTTAGGGTTCAATG+TGG | - | chr2_4:38900423-38900442 | Msa0327220:intron | 25.0% |
| ! | GAATTGAGATAGAAAGATAT+AGG | - | chr2_4:38900756-38900775 | Msa0327220:intron | 25.0% |
| !!! | TAATTAATCCATGTTTTTGC+TGG | - | chr2_4:38900951-38900970 | Msa0327220:intron | 25.0% |
| !! | CTGTATATTAATCTGTCTTT+TGG | - | chr2_4:38900994-38901013 | Msa0327220:intron | 25.0% |
| ! | AATCTCATACACAAATTTGT+CGG | + | chr2_4:38901172-38901191 | None:intergenic | 25.0% |
| ! | TTTATATTCAACGATTAGGA+TGG | - | chr2_4:38901238-38901257 | Msa0327220:intron | 25.0% |
| ! | TGATGTTTCTCAAAATGAAT+TGG | - | chr2_4:38901281-38901300 | Msa0327220:intron | 25.0% |
| !!! | ATGTATTAGCGTTTTGATTT+AGG | - | chr2_4:38899395-38899414 | Msa0327220:intron | 25.0% |
| !! | TTGAAATTTAGGTTTGATCA+AGG | - | chr2_4:38899487-38899506 | Msa0327220:intron | 25.0% |
| !!! | AATGTATGTATTGATTGCTT+TGG | - | chr2_4:38899926-38899945 | Msa0327220:intron | 25.0% |
| ! | ACAACTATAATGACTTAGTT+TGG | - | chr2_4:38900139-38900158 | Msa0327220:intron | 25.0% |
| !! | ATAATGACTTAGTTTGGATT+AGG | - | chr2_4:38900145-38900164 | Msa0327220:intron | 25.0% |
| ! | TCTCAATTGAAATATGCATT+TGG | - | chr2_4:38900186-38900205 | Msa0327220:intron | 25.0% |
| ! | TAAACATGGATGAAATTACA+TGG | + | chr2_4:38900268-38900287 | None:intergenic | 25.0% |
| !!! | TTTTAATTTAGGGTTCAATG+TGG | - | chr2_4:38900423-38900442 | Msa0327220:intron | 25.0% |
| ! | GAATTGAGATAGAAAGATAT+AGG | - | chr2_4:38900756-38900775 | Msa0327220:intron | 25.0% |
| !!! | TAATTAATCCATGTTTTTGC+TGG | - | chr2_4:38900951-38900970 | Msa0327220:intron | 25.0% |
| !! | CTGTATATTAATCTGTCTTT+TGG | - | chr2_4:38900994-38901013 | Msa0327220:intron | 25.0% |
| ! | AATCTCATACACAAATTTGT+CGG | + | chr2_4:38901172-38901191 | None:intergenic | 25.0% |
| ! | TTTATATTCAACGATTAGGA+TGG | - | chr2_4:38901238-38901257 | Msa0327220:intron | 25.0% |
| ! | TGATGTTTCTCAAAATGAAT+TGG | - | chr2_4:38901281-38901300 | Msa0327220:intron | 25.0% |
| ! | TCTGAGATTTGAATTTACCT+TGG | + | chr2_4:38899154-38899173 | None:intergenic | 30.0% |
| ! | TTCGATTTGCATGAAGAAAT+TGG | + | chr2_4:38899178-38899197 | None:intergenic | 30.0% |
| !! | AATCGATTTTCACTGTTGAT+CGG | + | chr2_4:38899297-38899316 | None:intergenic | 30.0% |
| AAACTTACCAATAGTAGGAA+TGG | + | chr2_4:38899660-38899679 | None:intergenic | 30.0% | |
| TTGCAAATCAAAATTCACAC+AGG | + | chr2_4:38899735-38899754 | None:intergenic | 30.0% | |
| ! | TTGCAAGTTTTGCTTATGTA+TGG | - | chr2_4:38899749-38899768 | Msa0327220:intron | 30.0% |
| !!! | ACTATCGATTTTATCCTGAT+TGG | - | chr2_4:38899884-38899903 | Msa0327220:CDS | 30.0% |
| !! | TAGTTTTACAAATGCCAATC+AGG | + | chr2_4:38899901-38899920 | None:intergenic | 30.0% |
| GAATTAACATGCAAAGAAGT+CGG | + | chr2_4:38899967-38899986 | None:intergenic | 30.0% | |
| GTTAAGTTCATTCGTGTTTA+TGG | - | chr2_4:38900228-38900247 | Msa0327220:intron | 30.0% | |
| TTGAATAAAATACCTTGTCC+TGG | + | chr2_4:38900498-38900517 | None:intergenic | 30.0% | |
| ATTCTCAACAAATTTGTGGA+TGG | + | chr2_4:38900740-38900759 | None:intergenic | 30.0% | |
| CTCAATTCTCAACAAATTTG+TGG | + | chr2_4:38900744-38900763 | None:intergenic | 30.0% | |
| TTCTAGATCATAATGTTCAC+TGG | - | chr2_4:38900847-38900866 | Msa0327220:CDS | 30.0% | |
| TTAACAGCAACAATGATGAA+GGG | + | chr2_4:38900934-38900953 | None:intergenic | 30.0% | |
| ATTAACAGCAACAATGATGA+AGG | + | chr2_4:38900935-38900954 | None:intergenic | 30.0% | |
| AATATGATCCAGCAAAAACA+TGG | + | chr2_4:38900962-38900981 | None:intergenic | 30.0% | |
| AATTCTCTAATCTCTGAATC+AGG | - | chr2_4:38901092-38901111 | Msa0327220:intron | 30.0% | |
| TCATCAAATATGTACAGGTA+TGG | + | chr2_4:38901327-38901346 | None:intergenic | 30.0% | |
| AGTCATCATCAAATATGTAC+AGG | + | chr2_4:38901332-38901351 | None:intergenic | 30.0% | |
| !! | ATATTTGATGATGACTCTGA+TGG | - | chr2_4:38901336-38901355 | Msa0327220:five_prime_UTR | 30.0% |
| ! | TCTGAGATTTGAATTTACCT+TGG | + | chr2_4:38899154-38899173 | None:intergenic | 30.0% |
| ! | TTCGATTTGCATGAAGAAAT+TGG | + | chr2_4:38899178-38899197 | None:intergenic | 30.0% |
| !! | AATCGATTTTCACTGTTGAT+CGG | + | chr2_4:38899297-38899316 | None:intergenic | 30.0% |
| AAACTTACCAATAGTAGGAA+TGG | + | chr2_4:38899660-38899679 | None:intergenic | 30.0% | |
| TTGCAAATCAAAATTCACAC+AGG | + | chr2_4:38899735-38899754 | None:intergenic | 30.0% | |
| ! | TTGCAAGTTTTGCTTATGTA+TGG | - | chr2_4:38899749-38899768 | Msa0327220:intron | 30.0% |
| !!! | ACTATCGATTTTATCCTGAT+TGG | - | chr2_4:38899884-38899903 | Msa0327220:CDS | 30.0% |
| !! | TAGTTTTACAAATGCCAATC+AGG | + | chr2_4:38899901-38899920 | None:intergenic | 30.0% |
| GAATTAACATGCAAAGAAGT+CGG | + | chr2_4:38899967-38899986 | None:intergenic | 30.0% | |
| GTTAAGTTCATTCGTGTTTA+TGG | - | chr2_4:38900228-38900247 | Msa0327220:intron | 30.0% | |
| TTGAATAAAATACCTTGTCC+TGG | + | chr2_4:38900498-38900517 | None:intergenic | 30.0% | |
| ATTCTCAACAAATTTGTGGA+TGG | + | chr2_4:38900740-38900759 | None:intergenic | 30.0% | |
| CTCAATTCTCAACAAATTTG+TGG | + | chr2_4:38900744-38900763 | None:intergenic | 30.0% | |
| TTCTAGATCATAATGTTCAC+TGG | - | chr2_4:38900847-38900866 | Msa0327220:CDS | 30.0% | |
| TTAACAGCAACAATGATGAA+GGG | + | chr2_4:38900934-38900953 | None:intergenic | 30.0% | |
| ATTAACAGCAACAATGATGA+AGG | + | chr2_4:38900935-38900954 | None:intergenic | 30.0% | |
| AATATGATCCAGCAAAAACA+TGG | + | chr2_4:38900962-38900981 | None:intergenic | 30.0% | |
| AATTCTCTAATCTCTGAATC+AGG | - | chr2_4:38901092-38901111 | Msa0327220:intron | 30.0% | |
| TCATCAAATATGTACAGGTA+TGG | + | chr2_4:38901327-38901346 | None:intergenic | 30.0% | |
| AGTCATCATCAAATATGTAC+AGG | + | chr2_4:38901332-38901351 | None:intergenic | 30.0% | |
| !! | ATATTTGATGATGACTCTGA+TGG | - | chr2_4:38901336-38901355 | Msa0327220:five_prime_UTR | 30.0% |
| ! | CATCAACTTTTCTTCTTCCA+AGG | - | chr2_4:38899134-38899153 | Msa0327220:CDS | 35.0% |
| ATCTAAACAGATCGAACGAA+TGG | + | chr2_4:38899206-38899225 | None:intergenic | 35.0% | |
| ACTGAACGATGAAAAACAGA+AGG | + | chr2_4:38899229-38899248 | None:intergenic | 35.0% | |
| CCTACTATTGGTAAGTTTCT+CGG | - | chr2_4:38899662-38899681 | Msa0327220:intron | 35.0% | |
| TAACATTGAACGTGATCAAG+TGG | - | chr2_4:38899997-38900016 | Msa0327220:CDS | 35.0% | |
| AAGTTCATTCGTGTTTATGG+AGG | - | chr2_4:38900231-38900250 | Msa0327220:intron | 35.0% | |
| ! | AGAACATTAGCTTCACTGTT+TGG | - | chr2_4:38900461-38900480 | Msa0327220:intron | 35.0% |
| ! | GAACATTAGCTTCACTGTTT+GGG | - | chr2_4:38900462-38900481 | Msa0327220:intron | 35.0% |
| CAAATATAAGACCTCCACAA+GGG | + | chr2_4:38900588-38900607 | None:intergenic | 35.0% | |
| ACAAATATAAGACCTCCACA+AGG | + | chr2_4:38900589-38900608 | None:intergenic | 35.0% | |
| TTGCTTGTACAACTCTGATT+TGG | - | chr2_4:38900804-38900823 | Msa0327220:CDS | 35.0% | |
| TGCTTGTACAACTCTGATTT+GGG | - | chr2_4:38900805-38900824 | Msa0327220:CDS | 35.0% | |
| !! | TCTGTCTTTTGGTAGTTGAA+TGG | - | chr2_4:38901005-38901024 | Msa0327220:intron | 35.0% |
| ATTCAACTATTCCTTGCTTC+AGG | - | chr2_4:38901189-38901208 | Msa0327220:intron | 35.0% | |
| GGATATTGAAGCTTATGATG+CGG | - | chr2_4:38901215-38901234 | Msa0327220:intron | 35.0% | |
| GCGGTTTATATTCAACGATT+AGG | - | chr2_4:38901234-38901253 | Msa0327220:intron | 35.0% | |
| ! | CATCAACTTTTCTTCTTCCA+AGG | - | chr2_4:38899134-38899153 | Msa0327220:CDS | 35.0% |
| ATCTAAACAGATCGAACGAA+TGG | + | chr2_4:38899206-38899225 | None:intergenic | 35.0% | |
| ACTGAACGATGAAAAACAGA+AGG | + | chr2_4:38899229-38899248 | None:intergenic | 35.0% | |
| CCTACTATTGGTAAGTTTCT+CGG | - | chr2_4:38899662-38899681 | Msa0327220:intron | 35.0% | |
| TAACATTGAACGTGATCAAG+TGG | - | chr2_4:38899997-38900016 | Msa0327220:CDS | 35.0% | |
| AAGTTCATTCGTGTTTATGG+AGG | - | chr2_4:38900231-38900250 | Msa0327220:intron | 35.0% | |
| ! | AGAACATTAGCTTCACTGTT+TGG | - | chr2_4:38900461-38900480 | Msa0327220:intron | 35.0% |
| ! | GAACATTAGCTTCACTGTTT+GGG | - | chr2_4:38900462-38900481 | Msa0327220:intron | 35.0% |
| CAAATATAAGACCTCCACAA+GGG | + | chr2_4:38900588-38900607 | None:intergenic | 35.0% | |
| ACAAATATAAGACCTCCACA+AGG | + | chr2_4:38900589-38900608 | None:intergenic | 35.0% | |
| TTGCTTGTACAACTCTGATT+TGG | - | chr2_4:38900804-38900823 | Msa0327220:CDS | 35.0% | |
| TGCTTGTACAACTCTGATTT+GGG | - | chr2_4:38900805-38900824 | Msa0327220:CDS | 35.0% | |
| !! | TCTGTCTTTTGGTAGTTGAA+TGG | - | chr2_4:38901005-38901024 | Msa0327220:intron | 35.0% |
| ATTCAACTATTCCTTGCTTC+AGG | - | chr2_4:38901189-38901208 | Msa0327220:intron | 35.0% | |
| GGATATTGAAGCTTATGATG+CGG | - | chr2_4:38901215-38901234 | Msa0327220:intron | 35.0% | |
| GCGGTTTATATTCAACGATT+AGG | - | chr2_4:38901234-38901253 | Msa0327220:intron | 35.0% | |
| AGGTTTGATCAAGGAAGTGA+AGG | - | chr2_4:38899496-38899515 | Msa0327220:intron | 40.0% | |
| CAAGGAAGTGAAGGAGAAAA+CGG | - | chr2_4:38899505-38899524 | Msa0327220:intron | 40.0% | |
| AAGGAAGTGAAGGAGAAAAC+GGG | - | chr2_4:38899506-38899525 | Msa0327220:intron | 40.0% | |
| GAAGGAAATGCGAATTCTGA+TGG | - | chr2_4:38899568-38899587 | Msa0327220:intron | 40.0% | |
| GAAATGCGAATTCTGATGGT+TGG | - | chr2_4:38899572-38899591 | Msa0327220:intron | 40.0% | |
| AAGCTTGAGCTTGTAGAGAA+TGG | + | chr2_4:38899621-38899640 | None:intergenic | 40.0% | |
| ATTCTCTACAAGCTCAAGCT+TGG | - | chr2_4:38899620-38899639 | Msa0327220:intron | 40.0% | |
| CTTACCAATAGTAGGAATGG+TGG | + | chr2_4:38899657-38899676 | None:intergenic | 40.0% | |
| CCGAGAAACTTACCAATAGT+AGG | + | chr2_4:38899665-38899684 | None:intergenic | 40.0% | |
| CACCTGTTGTGTTTAGACAT+CGG | - | chr2_4:38899824-38899843 | Msa0327220:CDS | 40.0% | |
| AAAGACAAAAAGGAGGAGAG+GGG | + | chr2_4:38900565-38900584 | None:intergenic | 40.0% | |
| GAAAGACAAAAAGGAGGAGA+GGG | + | chr2_4:38900566-38900585 | None:intergenic | 40.0% | |
| ACAAGGGAAAGACAAAAAGG+AGG | + | chr2_4:38900572-38900591 | None:intergenic | 40.0% | |
| ! | TCCTTTTTGTCTTTCCCTTG+TGG | - | chr2_4:38900571-38900590 | Msa0327220:intron | 40.0% |
| TCCACAAGGGAAAGACAAAA+AGG | + | chr2_4:38900575-38900594 | None:intergenic | 40.0% | |
| ! | TTTTTGTCTTTCCCTTGTGG+AGG | - | chr2_4:38900574-38900593 | Msa0327220:intron | 40.0% |
| GCTACATAGGATGTTGAATG+AGG | - | chr2_4:38900654-38900673 | Msa0327220:intron | 40.0% | |
| AATTTCTGTCGAGCTTCTCA+TGG | - | chr2_4:38900899-38900918 | Msa0327220:five_prime_UTR | 40.0% | |
| ATTTCTGTCGAGCTTCTCAT+GGG | - | chr2_4:38900900-38900919 | Msa0327220:five_prime_UTR | 40.0% | |
| TCTCTAATCTCTGAATCAGG+AGG | - | chr2_4:38901095-38901114 | Msa0327220:intron | 40.0% | |
| TGTCAGTCTCTAAATCAGCT+AGG | - | chr2_4:38901127-38901146 | Msa0327220:intron | 40.0% | |
| ACTATTCCTTGCTTCAGGAT+TGG | - | chr2_4:38901194-38901213 | Msa0327220:intron | 40.0% | |
| CAATATCCAATCCTGAAGCA+AGG | + | chr2_4:38901203-38901222 | None:intergenic | 40.0% | |
| AGGTTTGATCAAGGAAGTGA+AGG | - | chr2_4:38899496-38899515 | Msa0327220:intron | 40.0% | |
| CAAGGAAGTGAAGGAGAAAA+CGG | - | chr2_4:38899505-38899524 | Msa0327220:intron | 40.0% | |
| AAGGAAGTGAAGGAGAAAAC+GGG | - | chr2_4:38899506-38899525 | Msa0327220:intron | 40.0% | |
| GAAGGAAATGCGAATTCTGA+TGG | - | chr2_4:38899568-38899587 | Msa0327220:intron | 40.0% | |
| GAAATGCGAATTCTGATGGT+TGG | - | chr2_4:38899572-38899591 | Msa0327220:intron | 40.0% | |
| AAGCTTGAGCTTGTAGAGAA+TGG | + | chr2_4:38899621-38899640 | None:intergenic | 40.0% | |
| ATTCTCTACAAGCTCAAGCT+TGG | - | chr2_4:38899620-38899639 | Msa0327220:intron | 40.0% | |
| CTTACCAATAGTAGGAATGG+TGG | + | chr2_4:38899657-38899676 | None:intergenic | 40.0% | |
| CCGAGAAACTTACCAATAGT+AGG | + | chr2_4:38899665-38899684 | None:intergenic | 40.0% | |
| CACCTGTTGTGTTTAGACAT+CGG | - | chr2_4:38899824-38899843 | Msa0327220:CDS | 40.0% | |
| AAAGACAAAAAGGAGGAGAG+GGG | + | chr2_4:38900565-38900584 | None:intergenic | 40.0% | |
| GAAAGACAAAAAGGAGGAGA+GGG | + | chr2_4:38900566-38900585 | None:intergenic | 40.0% | |
| ACAAGGGAAAGACAAAAAGG+AGG | + | chr2_4:38900572-38900591 | None:intergenic | 40.0% | |
| ! | TCCTTTTTGTCTTTCCCTTG+TGG | - | chr2_4:38900571-38900590 | Msa0327220:intron | 40.0% |
| TCCACAAGGGAAAGACAAAA+AGG | + | chr2_4:38900575-38900594 | None:intergenic | 40.0% | |
| ! | TTTTTGTCTTTCCCTTGTGG+AGG | - | chr2_4:38900574-38900593 | Msa0327220:intron | 40.0% |
| GCTACATAGGATGTTGAATG+AGG | - | chr2_4:38900654-38900673 | Msa0327220:intron | 40.0% | |
| AATTTCTGTCGAGCTTCTCA+TGG | - | chr2_4:38900899-38900918 | Msa0327220:five_prime_UTR | 40.0% | |
| ATTTCTGTCGAGCTTCTCAT+GGG | - | chr2_4:38900900-38900919 | Msa0327220:five_prime_UTR | 40.0% | |
| TCTCTAATCTCTGAATCAGG+AGG | - | chr2_4:38901095-38901114 | Msa0327220:intron | 40.0% | |
| TGTCAGTCTCTAAATCAGCT+AGG | - | chr2_4:38901127-38901146 | Msa0327220:intron | 40.0% | |
| ACTATTCCTTGCTTCAGGAT+TGG | - | chr2_4:38901194-38901213 | Msa0327220:intron | 40.0% | |
| CAATATCCAATCCTGAAGCA+AGG | + | chr2_4:38901203-38901222 | None:intergenic | 40.0% | |
| TCGCAAAGACAGAGAGAGAA+GGG | + | chr2_4:38899105-38899124 | None:intergenic | 45.0% | |
| ATCGCAAAGACAGAGAGAGA+AGG | + | chr2_4:38899106-38899125 | None:intergenic | 45.0% | |
| AGGAAGTGAAGGAGAAAACG+GGG | - | chr2_4:38899507-38899526 | Msa0327220:intron | 45.0% | |
| CATTCACGAAGCTGTTCAGT+CGG | - | chr2_4:38899534-38899553 | Msa0327220:intron | 45.0% | |
| CAGTCGGTTATTTGCGAAGA+AGG | - | chr2_4:38899550-38899569 | Msa0327220:intron | 45.0% | |
| CTTGAGCTTGTAGAGAATGG+TGG | + | chr2_4:38899618-38899637 | None:intergenic | 45.0% | |
| GTCACCACCATTCCTACTAT+TGG | - | chr2_4:38899650-38899669 | Msa0327220:intron | 45.0% | |
| GTCCGATGTCTAAACACAAC+AGG | + | chr2_4:38899829-38899848 | None:intergenic | 45.0% | |
| TTAGACATCGGACACACGTT+TGG | - | chr2_4:38899836-38899855 | Msa0327220:CDS | 45.0% | |
| CACACGTTTGGTCTAAGTGT+CGG | - | chr2_4:38899848-38899867 | Msa0327220:CDS | 45.0% | |
| ! | AGCTTCACTGTTTGGGATGT+TGG | - | chr2_4:38900469-38900488 | Msa0327220:intron | 45.0% |
| ! | TTCACTGTTTGGGATGTTGG+AGG | - | chr2_4:38900472-38900491 | Msa0327220:intron | 45.0% |
| AAGACAAAAAGGAGGAGAGG+GGG | + | chr2_4:38900564-38900583 | None:intergenic | 45.0% | |
| GGAAAGACAAAAAGGAGGAG+AGG | + | chr2_4:38900567-38900586 | None:intergenic | 45.0% | |
| TTGTCGTTGACAGCAATGAC+AGG | - | chr2_4:38900605-38900624 | Msa0327220:intron | 45.0% | |
| TGTCGTTGACAGCAATGACA+GGG | - | chr2_4:38900606-38900625 | Msa0327220:intron | 45.0% | |
| TGACAGGGATAGAGTTGTTG+AGG | - | chr2_4:38900621-38900640 | Msa0327220:intron | 45.0% | |
| CATCCTATGTAGCTCATCTC+TGG | + | chr2_4:38900647-38900666 | None:intergenic | 45.0% | |
| TAAATCAGCTAGGCCTTTCC+TGG | - | chr2_4:38901137-38901156 | Msa0327220:intron | 45.0% | |
| AAATCAGCTAGGCCTTTCCT+GGG | - | chr2_4:38901138-38901157 | Msa0327220:intron | 45.0% | |
| ! | GAAACATCAGTGTTTTCCCC+TGG | + | chr2_4:38901270-38901289 | None:intergenic | 45.0% |
| TCGCAAAGACAGAGAGAGAA+GGG | + | chr2_4:38899105-38899124 | None:intergenic | 45.0% | |
| ATCGCAAAGACAGAGAGAGA+AGG | + | chr2_4:38899106-38899125 | None:intergenic | 45.0% | |
| AGGAAGTGAAGGAGAAAACG+GGG | - | chr2_4:38899507-38899526 | Msa0327220:intron | 45.0% | |
| CATTCACGAAGCTGTTCAGT+CGG | - | chr2_4:38899534-38899553 | Msa0327220:intron | 45.0% | |
| CAGTCGGTTATTTGCGAAGA+AGG | - | chr2_4:38899550-38899569 | Msa0327220:intron | 45.0% | |
| CTTGAGCTTGTAGAGAATGG+TGG | + | chr2_4:38899618-38899637 | None:intergenic | 45.0% | |
| GTCACCACCATTCCTACTAT+TGG | - | chr2_4:38899650-38899669 | Msa0327220:intron | 45.0% | |
| GTCCGATGTCTAAACACAAC+AGG | + | chr2_4:38899829-38899848 | None:intergenic | 45.0% | |
| TTAGACATCGGACACACGTT+TGG | - | chr2_4:38899836-38899855 | Msa0327220:CDS | 45.0% | |
| CACACGTTTGGTCTAAGTGT+CGG | - | chr2_4:38899848-38899867 | Msa0327220:CDS | 45.0% | |
| ! | AGCTTCACTGTTTGGGATGT+TGG | - | chr2_4:38900469-38900488 | Msa0327220:intron | 45.0% |
| ! | TTCACTGTTTGGGATGTTGG+AGG | - | chr2_4:38900472-38900491 | Msa0327220:intron | 45.0% |
| AAGACAAAAAGGAGGAGAGG+GGG | + | chr2_4:38900564-38900583 | None:intergenic | 45.0% | |
| GGAAAGACAAAAAGGAGGAG+AGG | + | chr2_4:38900567-38900586 | None:intergenic | 45.0% | |
| TTGTCGTTGACAGCAATGAC+AGG | - | chr2_4:38900605-38900624 | Msa0327220:intron | 45.0% | |
| TGTCGTTGACAGCAATGACA+GGG | - | chr2_4:38900606-38900625 | Msa0327220:intron | 45.0% | |
| TGACAGGGATAGAGTTGTTG+AGG | - | chr2_4:38900621-38900640 | Msa0327220:intron | 45.0% | |
| CATCCTATGTAGCTCATCTC+TGG | + | chr2_4:38900647-38900666 | None:intergenic | 45.0% | |
| TAAATCAGCTAGGCCTTTCC+TGG | - | chr2_4:38901137-38901156 | Msa0327220:intron | 45.0% | |
| AAATCAGCTAGGCCTTTCCT+GGG | - | chr2_4:38901138-38901157 | Msa0327220:intron | 45.0% | |
| ! | GAAACATCAGTGTTTTCCCC+TGG | + | chr2_4:38901270-38901289 | None:intergenic | 45.0% |
| !! | TGCAAGAGTGCTGCGTAGAA+AGG | - | chr2_4:38900357-38900376 | Msa0327220:intron | 50.0% |
| AGGGTTCAATGTGGAGACTG+TGG | - | chr2_4:38900432-38900451 | Msa0327220:intron | 50.0% | |
| AGACAAAAAGGAGGAGAGGG+GGG | + | chr2_4:38900563-38900582 | None:intergenic | 50.0% | |
| AGGCCAGAGATGAGCTACAT+AGG | - | chr2_4:38900641-38900660 | Msa0327220:intron | 50.0% | |
| TGGTTCAATGCGTGTCTCTG+TGG | - | chr2_4:38900867-38900886 | Msa0327220:exon | 50.0% | |
| !! | ATTTGTCGGTTCTTGCTCCC+AGG | + | chr2_4:38901158-38901177 | None:intergenic | 50.0% |
| GATTAGGATGGAGCTCACCA+GGG | - | chr2_4:38901250-38901269 | Msa0327220:intron | 50.0% | |
| ATTAGGATGGAGCTCACCAG+GGG | - | chr2_4:38901251-38901270 | Msa0327220:intron | 50.0% | |
| !! | TGCAAGAGTGCTGCGTAGAA+AGG | - | chr2_4:38900357-38900376 | Msa0327220:intron | 50.0% |
| AGGGTTCAATGTGGAGACTG+TGG | - | chr2_4:38900432-38900451 | Msa0327220:intron | 50.0% | |
| AGACAAAAAGGAGGAGAGGG+GGG | + | chr2_4:38900563-38900582 | None:intergenic | 50.0% | |
| AGGCCAGAGATGAGCTACAT+AGG | - | chr2_4:38900641-38900660 | Msa0327220:intron | 50.0% | |
| TGGTTCAATGCGTGTCTCTG+TGG | - | chr2_4:38900867-38900886 | Msa0327220:exon | 50.0% | |
| !! | ATTTGTCGGTTCTTGCTCCC+AGG | + | chr2_4:38901158-38901177 | None:intergenic | 50.0% |
| GATTAGGATGGAGCTCACCA+GGG | - | chr2_4:38901250-38901269 | Msa0327220:intron | 50.0% | |
| ATTAGGATGGAGCTCACCAG+GGG | - | chr2_4:38901251-38901270 | Msa0327220:intron | 50.0% | |
| !! | ATGGTTGGTCTCGATGCAGC+TGG | - | chr2_4:38899587-38899606 | Msa0327220:intron | 55.0% |
| ! | TGTTTGGGATGTTGGAGGCC+AGG | - | chr2_4:38900477-38900496 | Msa0327220:intron | 55.0% |
| GACAAAAAGGAGGAGAGGGG+GGG | + | chr2_4:38900562-38900581 | None:intergenic | 55.0% | |
| TCGGTTCTTGCTCCCAGGAA+AGG | + | chr2_4:38901153-38901172 | None:intergenic | 55.0% | |
| CGATTAGGATGGAGCTCACC+AGG | - | chr2_4:38901249-38901268 | Msa0327220:intron | 55.0% | |
| !! | ATGGTTGGTCTCGATGCAGC+TGG | - | chr2_4:38899587-38899606 | Msa0327220:intron | 55.0% |
| ! | TGTTTGGGATGTTGGAGGCC+AGG | - | chr2_4:38900477-38900496 | Msa0327220:intron | 55.0% |
| GACAAAAAGGAGGAGAGGGG+GGG | + | chr2_4:38900562-38900581 | None:intergenic | 55.0% | |
| TCGGTTCTTGCTCCCAGGAA+AGG | + | chr2_4:38901153-38901172 | None:intergenic | 55.0% | |
| CGATTAGGATGGAGCTCACC+AGG | - | chr2_4:38901249-38901268 | Msa0327220:intron | 55.0% | |
| GGATGTTGGAGGCCAGGACA+AGG | - | chr2_4:38900483-38900502 | Msa0327220:intron | 60.0% | |
| GGATGTTGGAGGCCAGGACA+AGG | - | chr2_4:38900483-38900502 | Msa0327220:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 38899092 | 38901365 | 38899092 | ID=Msa0327220;Name=Msa0327220 |
| chr2_4 | mRNA | 38899092 | 38901365 | 38899092 | ID=Msa0327220-mRNA-1;Parent=Msa0327220;Name=Msa0327220-mRNA-1;_AED=0.24;_eAED=0.26;_QI=141|0.5|0.4|0.8|0.5|0.6|5|0|187 |
| chr2_4 | exon | 38899092 | 38899343 | 38899092 | ID=Msa0327220-mRNA-1:exon:11656;Parent=Msa0327220-mRNA-1 |
| chr2_4 | exon | 38899782 | 38899922 | 38899782 | ID=Msa0327220-mRNA-1:exon:11655;Parent=Msa0327220-mRNA-1 |
| chr2_4 | exon | 38899953 | 38900023 | 38899953 | ID=Msa0327220-mRNA-1:exon:11654;Parent=Msa0327220-mRNA-1 |
| chr2_4 | exon | 38900786 | 38900959 | 38900786 | ID=Msa0327220-mRNA-1:exon:11653;Parent=Msa0327220-mRNA-1 |
| chr2_4 | exon | 38901302 | 38901365 | 38901302 | ID=Msa0327220-mRNA-1:exon:11652;Parent=Msa0327220-mRNA-1 |
| chr2_4 | five_prime_UTR | 38901302 | 38901365 | 38901302 | ID=Msa0327220-mRNA-1:five_prime_utr;Parent=Msa0327220-mRNA-1 |
| chr2_4 | five_prime_UTR | 38900883 | 38900959 | 38900883 | ID=Msa0327220-mRNA-1:five_prime_utr;Parent=Msa0327220-mRNA-1 |
| chr2_4 | CDS | 38900786 | 38900882 | 38900786 | ID=Msa0327220-mRNA-1:cds;Parent=Msa0327220-mRNA-1 |
| chr2_4 | CDS | 38899953 | 38900023 | 38899953 | ID=Msa0327220-mRNA-1:cds;Parent=Msa0327220-mRNA-1 |
| chr2_4 | CDS | 38899782 | 38899922 | 38899782 | ID=Msa0327220-mRNA-1:cds;Parent=Msa0327220-mRNA-1 |
| chr2_4 | CDS | 38899092 | 38899343 | 38899092 | ID=Msa0327220-mRNA-1:cds;Parent=Msa0327220-mRNA-1 |
| Gene Sequence |
| Protein sequence |
