Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0327200 | RZC23240.1 | 71.341 | 164 | 40 | 1 | 10 | 173 | 5 | 161 | 5.87e-65 | 213 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0327200 | sp|P49076|ARF_MAIZE | 81.746 | 126 | 16 | 1 | 48 | 173 | 2 | 120 | 5.09e-63 | 198 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0045790 | Msa0327200 | 0.805319 | 1.413490e-49 | -8.615850e-47 |
| Msa0046160 | Msa0327200 | 0.802443 | 5.597613e-49 | -8.615850e-47 |
| Msa0095560 | Msa0327200 | 0.816414 | 5.600082e-52 | -8.615850e-47 |
| Msa0123300 | Msa0327200 | 0.814931 | 1.198256e-51 | -8.615850e-47 |
| Msa0143560 | Msa0327200 | 0.815598 | 8.515603e-52 | -8.615850e-47 |
| Msa0225220 | Msa0327200 | 0.815853 | 7.472515e-52 | -8.615850e-47 |
| Msa0264780 | Msa0327200 | 0.814694 | 1.352054e-51 | -8.615850e-47 |
| Msa0327200 | Msa0327220 | 0.901633 | 2.198522e-78 | -8.615850e-47 |
| Msa0327200 | Msa0341540 | 0.804640 | 1.960363e-49 | -8.615850e-47 |
| Msa0327200 | Msa0484780 | 0.808243 | 3.408362e-50 | -8.615850e-47 |
| Msa0327200 | Msa0520700 | 0.811153 | 8.073898e-51 | -8.615850e-47 |
| Msa0327200 | Msa0531180 | 0.800995 | 1.109542e-48 | -8.615850e-47 |
| Msa0327200 | Msa0572420 | 0.803205 | 3.895130e-49 | -8.615850e-47 |
| Msa0327200 | Msa0622650 | 0.813703 | 2.238380e-51 | -8.615850e-47 |
| Msa0327200 | Msa0667050 | 0.803596 | 3.232373e-49 | -8.615850e-47 |
| Msa0327200 | Msa0712590 | 0.804859 | 1.764583e-49 | -8.615850e-47 |
| Msa0327200 | Msa0753720 | 0.809073 | 2.265374e-50 | -8.615850e-47 |
| Msa0327200 | Msa0830510 | 0.807787 | 4.262319e-50 | -8.615850e-47 |
| Msa0327200 | Msa0880950 | 0.805273 | 1.445408e-49 | -8.615850e-47 |
| Msa0327200 | Msa0898750 | 0.800196 | 1.613984e-48 | -8.615850e-47 |
| Msa0327200 | Msa0900620 | 0.811625 | 6.376904e-51 | -8.615850e-47 |
| Msa0327200 | Msa1080960 | 0.812550 | 4.006188e-51 | -8.615850e-47 |
| Msa0327200 | Msa1082500 | 0.811302 | 7.492522e-51 | -8.615850e-47 |
| Msa0327200 | Msa1098400 | 0.818656 | 1.748889e-52 | -8.615850e-47 |
| Msa0327200 | Msa1098420 | 0.800863 | 1.180491e-48 | -8.615850e-47 |
| Msa0327200 | Msa1158310 | 0.813734 | 2.202656e-51 | -8.615850e-47 |
| Msa0327200 | Msa1188710 | 0.801347 | 9.398616e-49 | -8.615850e-47 |
| Msa0327200 | Msa1205370 | 0.836541 | 8.811098e-57 | -8.615850e-47 |
| Msa0327200 | Msa1207220 | 0.802451 | 5.576020e-49 | -8.615850e-47 |
| Msa0327200 | Msa1250290 | 0.820916 | 5.327031e-53 | -8.615850e-47 |
| Msa0327200 | Msa1297290 | 0.829369 | 5.351586e-55 | -8.615850e-47 |
| Msa0327200 | Msa1353470 | 0.811707 | 6.119724e-51 | -8.615850e-47 |
| Msa0327200 | Msa1368430 | 0.801340 | 9.427681e-49 | -8.615850e-47 |
| Msa0327200 | Msa1383230 | 0.818813 | 1.611209e-52 | -8.615850e-47 |
| Msa0327200 | Msa1385000 | 0.827119 | 1.865118e-54 | -8.615850e-47 |
| Msa0327200 | Msa1409700 | 0.803289 | 3.742985e-49 | -8.615850e-47 |
| Msa0327200 | Msa1435270 | 0.818660 | 1.745454e-52 | -8.615850e-47 |
| Msa0327200 | Msa1436480 | 0.802065 | 6.696137e-49 | -8.615850e-47 |
| Msa0327200 | Msa1463900 | 0.826538 | 2.567800e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0327200 | MtrunA17_Chr6g0450081 | 81.746 | 126 | 16 | 1 | 48 | 173 | 2 | 120 | 2.73e-64 | 198 |
| Msa0327200 | MtrunA17_Chr5g0413451 | 81.746 | 126 | 16 | 1 | 48 | 173 | 2 | 120 | 2.79e-64 | 198 |
| Msa0327200 | MtrunA17_Chr5g0413441 | 81.746 | 126 | 16 | 1 | 48 | 173 | 2 | 120 | 2.79e-64 | 198 |
| Msa0327200 | MtrunA17_Chr1g0194261 | 80.952 | 126 | 17 | 1 | 48 | 173 | 2 | 120 | 8.86e-64 | 197 |
| Msa0327200 | MtrunA17_Chr7g0270301 | 80.952 | 126 | 17 | 1 | 48 | 173 | 2 | 120 | 9.25e-64 | 197 |
| Msa0327200 | MtrunA17_Chr5g0401761 | 72.131 | 122 | 27 | 1 | 48 | 169 | 2 | 116 | 1.55e-55 | 176 |
| Msa0327200 | MtrunA17_Chr1g0191731 | 91.765 | 85 | 7 | 0 | 166 | 250 | 185 | 269 | 5.57e-51 | 167 |
| Msa0327200 | MtrunA17_Chr4g0072861 | 55.906 | 127 | 47 | 3 | 48 | 173 | 2 | 120 | 1.27e-40 | 138 |
| Msa0327200 | MtrunA17_Chr5g0395631 | 52.381 | 126 | 53 | 1 | 48 | 173 | 2 | 120 | 1.71e-38 | 132 |
| Msa0327200 | MtrunA17_Chr5g0395641 | 49.206 | 126 | 59 | 2 | 48 | 173 | 2 | 122 | 4.87e-37 | 129 |
| Msa0327200 | MtrunA17_Chr4g0039591 | 51.587 | 126 | 54 | 1 | 48 | 173 | 2 | 120 | 5.86e-37 | 129 |
| Msa0327200 | MtrunA17_Chr1g0188111 | 46.094 | 128 | 58 | 2 | 48 | 173 | 2 | 120 | 4.17e-30 | 110 |
| Msa0327200 | MtrunA17_Chr5g0395651 | 65.278 | 72 | 25 | 0 | 48 | 119 | 2 | 73 | 2.26e-29 | 105 |
| Msa0327200 | MtrunA17_Chr8g0373271 | 42.056 | 107 | 53 | 4 | 64 | 169 | 17 | 115 | 3.07e-17 | 77.0 |
| Msa0327200 | MtrunA17_Chr5g0401071 | 31.690 | 142 | 79 | 4 | 50 | 187 | 6 | 133 | 6.98e-14 | 68.2 |
| Msa0327200 | MtrunA17_Chr5g0434561 | 34.513 | 113 | 60 | 3 | 58 | 166 | 14 | 116 | 3.15e-13 | 66.2 |
| Msa0327200 | MtrunA17_Chr2g0287721 | 29.688 | 128 | 72 | 3 | 51 | 169 | 5 | 123 | 8.89e-12 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0327200 | AT5G14670.2 | 80.952 | 126 | 17 | 1 | 48 | 173 | 2 | 120 | 1.81e-63 | 196 |
| Msa0327200 | AT5G14670.3 | 80.952 | 126 | 17 | 1 | 48 | 173 | 2 | 120 | 1.81e-63 | 196 |
| Msa0327200 | AT5G14670.1 | 80.952 | 126 | 17 | 1 | 48 | 173 | 2 | 120 | 3.58e-63 | 196 |
| Msa0327200 | AT1G10630.1 | 80.159 | 126 | 18 | 1 | 48 | 173 | 2 | 120 | 5.32e-63 | 195 |
| Msa0327200 | AT1G10630.2 | 80.159 | 126 | 18 | 1 | 48 | 173 | 2 | 120 | 5.32e-63 | 195 |
| Msa0327200 | AT1G23490.1 | 80.159 | 126 | 18 | 1 | 48 | 173 | 2 | 120 | 6.40e-63 | 195 |
| Msa0327200 | AT1G70490.2 | 80.159 | 126 | 18 | 1 | 48 | 173 | 2 | 120 | 6.40e-63 | 195 |
| Msa0327200 | AT1G70490.7 | 80.159 | 126 | 18 | 1 | 48 | 173 | 2 | 120 | 6.40e-63 | 195 |
| Msa0327200 | AT1G70490.4 | 80.159 | 126 | 18 | 1 | 48 | 173 | 2 | 120 | 6.40e-63 | 195 |
| Msa0327200 | AT1G70490.3 | 80.159 | 126 | 18 | 1 | 48 | 173 | 2 | 120 | 6.40e-63 | 195 |
| Msa0327200 | AT1G70490.1 | 80.159 | 126 | 18 | 1 | 48 | 173 | 2 | 120 | 6.40e-63 | 195 |
| Msa0327200 | AT1G70490.6 | 80.159 | 126 | 18 | 1 | 48 | 173 | 2 | 120 | 6.40e-63 | 195 |
| Msa0327200 | AT1G70490.5 | 80.159 | 126 | 18 | 1 | 48 | 173 | 2 | 120 | 6.40e-63 | 195 |
| Msa0327200 | AT2G47170.2 | 80.159 | 126 | 18 | 1 | 48 | 173 | 2 | 120 | 1.20e-62 | 194 |
| Msa0327200 | AT2G47170.1 | 80.159 | 126 | 18 | 1 | 48 | 173 | 2 | 120 | 1.20e-62 | 194 |
| Msa0327200 | AT2G47170.3 | 80.159 | 126 | 18 | 1 | 48 | 173 | 2 | 120 | 1.20e-62 | 194 |
| Msa0327200 | AT3G62290.3 | 79.365 | 126 | 19 | 1 | 48 | 173 | 2 | 120 | 3.99e-62 | 193 |
| Msa0327200 | AT3G62290.1 | 79.365 | 126 | 19 | 1 | 48 | 173 | 2 | 120 | 3.99e-62 | 193 |
| Msa0327200 | AT3G62290.2 | 79.365 | 126 | 19 | 1 | 48 | 173 | 2 | 120 | 3.99e-62 | 193 |
| Msa0327200 | AT2G15310.1 | 57.377 | 122 | 45 | 1 | 48 | 169 | 2 | 116 | 1.81e-41 | 141 |
| Msa0327200 | AT3G03120.2 | 52.381 | 126 | 53 | 1 | 48 | 173 | 2 | 120 | 8.77e-39 | 132 |
| Msa0327200 | AT2G24765.2 | 51.969 | 127 | 52 | 3 | 48 | 173 | 2 | 120 | 2.64e-38 | 130 |
| Msa0327200 | AT2G24765.1 | 51.969 | 127 | 52 | 3 | 48 | 173 | 2 | 120 | 8.83e-38 | 131 |
| Msa0327200 | AT3G03120.1 | 52.381 | 126 | 53 | 1 | 48 | 173 | 2 | 120 | 9.45e-38 | 131 |
| Msa0327200 | AT5G17060.2 | 52.000 | 125 | 52 | 3 | 48 | 172 | 2 | 118 | 1.76e-37 | 130 |
| Msa0327200 | AT5G17060.1 | 52.000 | 125 | 52 | 3 | 48 | 172 | 2 | 118 | 1.76e-37 | 130 |
| Msa0327200 | AT3G22950.1 | 46.094 | 128 | 58 | 2 | 48 | 173 | 2 | 120 | 6.14e-30 | 110 |
| Msa0327200 | AT3G22950.2 | 46.094 | 128 | 58 | 2 | 48 | 173 | 2 | 120 | 6.14e-30 | 110 |
| Msa0327200 | AT1G02430.2 | 42.500 | 120 | 63 | 3 | 48 | 166 | 2 | 116 | 1.53e-24 | 96.3 |
| Msa0327200 | AT1G02430.1 | 42.500 | 120 | 63 | 3 | 48 | 166 | 2 | 116 | 2.67e-24 | 96.3 |
| Msa0327200 | AT1G02440.1 | 39.167 | 120 | 67 | 2 | 48 | 166 | 2 | 116 | 6.78e-22 | 90.1 |
| Msa0327200 | AT3G05250.3 | 48.864 | 88 | 40 | 1 | 165 | 247 | 122 | 209 | 1.75e-18 | 81.3 |
| Msa0327200 | AT3G05250.2 | 48.864 | 88 | 40 | 1 | 165 | 247 | 122 | 209 | 1.75e-18 | 81.3 |
| Msa0327200 | AT3G05250.1 | 48.864 | 88 | 40 | 1 | 165 | 247 | 191 | 278 | 4.99e-18 | 81.6 |
| Msa0327200 | AT2G18390.1 | 41.818 | 110 | 55 | 4 | 64 | 172 | 17 | 118 | 5.54e-17 | 76.6 |
| Msa0327200 | AT1G02440.2 | 44.444 | 72 | 39 | 1 | 48 | 118 | 2 | 73 | 5.97e-16 | 72.4 |
| Msa0327200 | AT5G37680.1 | 33.628 | 113 | 61 | 3 | 58 | 166 | 14 | 116 | 4.09e-13 | 66.2 |
| Msa0327200 | AT3G49870.1 | 31.405 | 121 | 69 | 3 | 50 | 166 | 6 | 116 | 5.31e-13 | 65.9 |
| Msa0327200 | AT1G09180.1 | 34.862 | 109 | 64 | 1 | 59 | 167 | 16 | 117 | 8.30e-12 | 62.8 |
| Msa0327200 | AT5G67560.1 | 31.858 | 113 | 63 | 3 | 58 | 166 | 14 | 116 | 8.42e-12 | 62.8 |
| Msa0327200 | AT5G52210.1 | 29.457 | 129 | 71 | 3 | 51 | 169 | 5 | 123 | 5.15e-11 | 60.8 |
| Msa0327200 | AT5G52210.2 | 29.457 | 129 | 71 | 3 | 51 | 169 | 5 | 123 | 5.15e-11 | 60.8 |
Find 62 sgRNAs with CRISPR-Local
Find 254 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGGGGTATGAGTTGGAAAT+TGG | 0.291980 | 2_4:-38777523 | None:intergenic |
| ATTCAACTATTCCTTGCTTC+AGG | 0.313766 | 2_4:+38779668 | Msa0327200:CDS |
| TAAATCAGCTAGGCCTTTCC+TGG | 0.324763 | 2_4:+38779616 | Msa0327200:CDS |
| GCGGTTTATATTCAACGATT+AGG | 0.330129 | 2_4:+38779713 | Msa0327200:CDS |
| GTCACCACCATTCCTACTAT+TGG | 0.339573 | 2_4:+38778129 | Msa0327200:CDS |
| AGAACATTAGCTTCACTGTT+TGG | 0.346877 | 2_4:+38778940 | Msa0327200:CDS |
| GAACATTAGCTTCACTGTTT+GGG | 0.346980 | 2_4:+38778941 | Msa0327200:CDS |
| AGCTTCACTGTTTGGGATGT+TGG | 0.348779 | 2_4:+38778948 | Msa0327200:CDS |
| CAGTCGGTTATTTGCGAAGA+AGG | 0.396684 | 2_4:+38778029 | Msa0327200:CDS |
| TCCACAAGGGAAAGACAAAA+AGG | 0.398388 | 2_4:-38779051 | None:intergenic |
| CGATTAGGATGGAGCTCACC+AGG | 0.401263 | 2_4:+38779728 | Msa0327200:CDS |
| GCTTTGCAGCAACGTGGAAT+AGG | 0.404418 | 2_4:-38777550 | None:intergenic |
| TGATGTTTCTCAAAATGAAT+TGG | 0.413515 | 2_4:+38779760 | Msa0327200:CDS |
| ACTATTCCTTGCTTCAGGAT+TGG | 0.433302 | 2_4:+38779673 | Msa0327200:CDS |
| AATCTCATACACAAATTTGT+CGG | 0.438859 | 2_4:-38779648 | None:intergenic |
| TTCACTGTTTGGGATGTTGG+AGG | 0.449444 | 2_4:+38778951 | Msa0327200:CDS |
| CAAGGAAGTGAAGGAGAAAA+CGG | 0.456890 | 2_4:+38777984 | Msa0327200:CDS |
| TTGAATAAAATACCTTGTCC+TGG | 0.462109 | 2_4:-38778974 | None:intergenic |
| AGGAATTGTGGGGTATGAGT+TGG | 0.471304 | 2_4:-38777530 | None:intergenic |
| CAACGTGGAATAGGAATTGT+GGG | 0.473121 | 2_4:-38777541 | None:intergenic |
| TTGAAATTTAGGTTTGATCA+AGG | 0.476869 | 2_4:+38777966 | Msa0327200:intron |
| TCGGTTCTTGCTCCCAGGAA+AGG | 0.483050 | 2_4:-38779629 | None:intergenic |
| AAGGAAGTGAAGGAGAAAAC+GGG | 0.483308 | 2_4:+38777985 | Msa0327200:CDS |
| TGTTTGGGATGTTGGAGGCC+AGG | 0.484783 | 2_4:+38778956 | Msa0327200:CDS |
| CATCCTATGTAGCTCATCTC+TGG | 0.489228 | 2_4:-38779123 | None:intergenic |
| TCATCAAATATGTACAGGTA+TGG | 0.500375 | 2_4:-38779803 | None:intergenic |
| ATTCTCTACAAGCTCAAGCT+TGG | 0.503263 | 2_4:+38778099 | Msa0327200:CDS |
| AGGTTTGATCAAGGAAGTGA+AGG | 0.505738 | 2_4:+38777975 | Msa0327200:intron |
| TTTATATTCAACGATTAGGA+TGG | 0.507524 | 2_4:+38779717 | Msa0327200:CDS |
| ATTTGTCGGTTCTTGCTCCC+AGG | 0.509474 | 2_4:-38779634 | None:intergenic |
| CCGAGAAACTTACCAATAGT+AGG | 0.510028 | 2_4:-38778141 | None:intergenic |
| AGTCATCATCAAATATGTAC+AGG | 0.530474 | 2_4:-38779808 | None:intergenic |
| AAGCTTGAGCTTGTAGAGAA+TGG | 0.532263 | 2_4:-38778097 | None:intergenic |
| TTGTCGTTGACAGTAATGAC+AGG | 0.532677 | 2_4:+38779084 | Msa0327200:CDS |
| GCAACGTGGAATAGGAATTG+TGG | 0.540447 | 2_4:-38777542 | None:intergenic |
| AAACTTACCAATAGTAGGAA+TGG | 0.549558 | 2_4:-38778136 | None:intergenic |
| AGGCCAGAGATGAGCTACAT+AGG | 0.552666 | 2_4:+38779120 | Msa0327200:CDS |
| GAAGGAAATGCGAATTCTGA+TGG | 0.554686 | 2_4:+38778047 | Msa0327200:CDS |
| ATGGTTGGTCTCGATGCAGC+TGG | 0.564897 | 2_4:+38778066 | Msa0327200:CDS |
| CATTCACGAAGCTGTTCAGT+CGG | 0.566942 | 2_4:+38778013 | Msa0327200:CDS |
| TCGCAAAGACAGAGAGAGAA+GGG | 0.572355 | 2_4:-38777581 | None:intergenic |
| GAAATGCGAATTCTGATGGT+TGG | 0.586975 | 2_4:+38778051 | Msa0327200:CDS |
| TGACAGGGATAGAGTTGTTG+AGG | 0.602509 | 2_4:+38779100 | Msa0327200:CDS |
| GGATGTTGGAGGCCAGGACA+AGG | 0.602549 | 2_4:+38778962 | Msa0327200:CDS |
| CAATATCCAATCCTGAAGCA+AGG | 0.603049 | 2_4:-38779679 | None:intergenic |
| ATCGCAAAGACAGAGAGAGA+AGG | 0.609461 | 2_4:-38777582 | None:intergenic |
| ATATTTGATGATGACTCTGA+TGG | 0.611424 | 2_4:+38779815 | Msa0327200:CDS |
| AAATCAGCTAGGCCTTTCCT+GGG | 0.618873 | 2_4:+38779617 | Msa0327200:CDS |
| CTTACCAATAGTAGGAATGG+TGG | 0.621045 | 2_4:-38778133 | None:intergenic |
| TGTCAGTCTCTAAATCAGCT+AGG | 0.625702 | 2_4:+38779606 | Msa0327200:CDS |
| GGATATTGAAGCTTATGATG+CGG | 0.631103 | 2_4:+38779694 | Msa0327200:CDS |
| AGGGTTCAATGTGGAGACTG+TGG | 0.633133 | 2_4:+38778911 | Msa0327200:intron |
| GCTACATAGGATGTTGAATG+AGG | 0.633182 | 2_4:+38779133 | Msa0327200:CDS |
| GATTAGGATGGAGCTCACCA+GGG | 0.636076 | 2_4:+38779729 | Msa0327200:CDS |
| CTTGAGCTTGTAGAGAATGG+TGG | 0.640954 | 2_4:-38778094 | None:intergenic |
| TGTCGTTGACAGTAATGACA+GGG | 0.667156 | 2_4:+38779085 | Msa0327200:CDS |
| ACAAATATAAGACCTCCACA+AGG | 0.671284 | 2_4:-38779065 | None:intergenic |
| AAGAATGCTTTGCAGCAACG+TGG | 0.677733 | 2_4:-38777556 | None:intergenic |
| ATTAGGATGGAGCTCACCAG+GGG | 0.691130 | 2_4:+38779730 | Msa0327200:CDS |
| CAAATATAAGACCTCCACAA+GGG | 0.698326 | 2_4:-38779064 | None:intergenic |
| AACGTGGAATAGGAATTGTG+GGG | 0.758758 | 2_4:-38777540 | None:intergenic |
| AGGAAGTGAAGGAGAAAACG+GGG | 0.760741 | 2_4:+38777986 | Msa0327200:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTATTTTATATTTTAATTT+AGG | + | chr2_4:38778891-38778910 | Msa0327200:intron | 0.0% |
| !!! | TTATTTTATATTTTAATTTA+GGG | + | chr2_4:38778892-38778911 | Msa0327200:intron | 0.0% |
| !!! | TTTATTTTATATTTTAATTT+AGG | + | chr2_4:38778891-38778910 | Msa0327200:intron | 0.0% |
| !!! | TTATTTTATATTTTAATTTA+GGG | + | chr2_4:38778892-38778911 | Msa0327200:intron | 0.0% |
| !!! | TATGAATAATGTTTATGTTT+TGG | + | chr2_4:38777921-38777940 | Msa0327200:intron | 15.0% |
| !!! | TGAAATTTTGATTGAAATTT+AGG | + | chr2_4:38777955-38777974 | Msa0327200:intron | 15.0% |
| !! | GATTTCATTGTTAAATATAA+AGG | - | chr2_4:38778534-38778553 | None:intergenic | 15.0% |
| !!! | ATGTTTATTTTAAACTTGAT+GGG | + | chr2_4:38778760-38778779 | Msa0327200:intron | 15.0% |
| !!! | TATGAATAATGTTTATGTTT+TGG | + | chr2_4:38777921-38777940 | Msa0327200:intron | 15.0% |
| !!! | TGAAATTTTGATTGAAATTT+AGG | + | chr2_4:38777955-38777974 | Msa0327200:intron | 15.0% |
| !! | GATTTCATTGTTAAATATAA+AGG | - | chr2_4:38778534-38778553 | None:intergenic | 15.0% |
| !!! | ATGTTTATTTTAAACTTGAT+GGG | + | chr2_4:38778760-38778779 | Msa0327200:intron | 15.0% |
| !!! | ATGTATTAGTGTTTTGATTT+AGG | + | chr2_4:38777874-38777893 | Msa0327200:intron | 20.0% |
| !! | CAATATATGACATAAAGTTT+GGG | - | chr2_4:38778556-38778575 | None:intergenic | 20.0% |
| !! | ACAATATATGACATAAAGTT+TGG | - | chr2_4:38778557-38778576 | None:intergenic | 20.0% |
| !!! | CATCAAGTTTAAAATAAACA+TGG | - | chr2_4:38778761-38778780 | None:intergenic | 20.0% |
| !!! | CATGTTTATTTTAAACTTGA+TGG | + | chr2_4:38778759-38778778 | Msa0327200:intron | 20.0% |
| !!! | TACTTTTCTTATATTCAGTT+TGG | + | chr2_4:38779156-38779175 | Msa0327200:intron | 20.0% |
| !!! | ATGTATTAGTGTTTTGATTT+AGG | + | chr2_4:38777874-38777893 | Msa0327200:intron | 20.0% |
| !! | CAATATATGACATAAAGTTT+GGG | - | chr2_4:38778556-38778575 | None:intergenic | 20.0% |
| !! | ACAATATATGACATAAAGTT+TGG | - | chr2_4:38778557-38778576 | None:intergenic | 20.0% |
| !!! | CATCAAGTTTAAAATAAACA+TGG | - | chr2_4:38778761-38778780 | None:intergenic | 20.0% |
| !!! | CATGTTTATTTTAAACTTGA+TGG | + | chr2_4:38778759-38778778 | Msa0327200:intron | 20.0% |
| !!! | TACTTTTCTTATATTCAGTT+TGG | + | chr2_4:38779156-38779175 | Msa0327200:intron | 20.0% |
| !! | TTGAAATTTAGGTTTGATCA+AGG | + | chr2_4:38777966-38777985 | Msa0327200:intron | 25.0% |
| !!! | AATGTATGTATTGATTGCTT+TGG | + | chr2_4:38778405-38778424 | Msa0327200:intron | 25.0% |
| ! | ACAACTATAATGACTTAGTT+TGG | + | chr2_4:38778618-38778637 | Msa0327200:intron | 25.0% |
| !! | ATAATGACTTAGTTTGGATT+AGG | + | chr2_4:38778624-38778643 | Msa0327200:intron | 25.0% |
| ! | TCTCAATTGAAATATGCATT+TGG | + | chr2_4:38778665-38778684 | Msa0327200:intron | 25.0% |
| ! | TAAACATGGATGAAATTACA+TGG | - | chr2_4:38778747-38778766 | None:intergenic | 25.0% |
| !!! | TTTTAATTTAGGGTTCAATG+TGG | + | chr2_4:38778902-38778921 | Msa0327200:intron | 25.0% |
| ! | GAATTGAGATAGAAAGATAT+AGG | + | chr2_4:38779235-38779254 | Msa0327200:intron | 25.0% |
| !!! | TAATTAATCCATGTTTTTGC+TGG | + | chr2_4:38779430-38779449 | Msa0327200:intron | 25.0% |
| !! | CTGTATATTAATCTGTCTTT+TGG | + | chr2_4:38779473-38779492 | Msa0327200:intron | 25.0% |
| ! | AATCTCATACACAAATTTGT+CGG | - | chr2_4:38779651-38779670 | None:intergenic | 25.0% |
| ! | TTTATATTCAACGATTAGGA+TGG | + | chr2_4:38779717-38779736 | Msa0327200:CDS | 25.0% |
| ! | TGATGTTTCTCAAAATGAAT+TGG | + | chr2_4:38779760-38779779 | Msa0327200:CDS | 25.0% |
| !! | TTGAAATTTAGGTTTGATCA+AGG | + | chr2_4:38777966-38777985 | Msa0327200:intron | 25.0% |
| !!! | AATGTATGTATTGATTGCTT+TGG | + | chr2_4:38778405-38778424 | Msa0327200:intron | 25.0% |
| ! | ACAACTATAATGACTTAGTT+TGG | + | chr2_4:38778618-38778637 | Msa0327200:intron | 25.0% |
| !! | ATAATGACTTAGTTTGGATT+AGG | + | chr2_4:38778624-38778643 | Msa0327200:intron | 25.0% |
| ! | TCTCAATTGAAATATGCATT+TGG | + | chr2_4:38778665-38778684 | Msa0327200:intron | 25.0% |
| ! | TAAACATGGATGAAATTACA+TGG | - | chr2_4:38778747-38778766 | None:intergenic | 25.0% |
| !!! | TTTTAATTTAGGGTTCAATG+TGG | + | chr2_4:38778902-38778921 | Msa0327200:intron | 25.0% |
| ! | GAATTGAGATAGAAAGATAT+AGG | + | chr2_4:38779235-38779254 | Msa0327200:intron | 25.0% |
| !!! | TAATTAATCCATGTTTTTGC+TGG | + | chr2_4:38779430-38779449 | Msa0327200:intron | 25.0% |
| !! | CTGTATATTAATCTGTCTTT+TGG | + | chr2_4:38779473-38779492 | Msa0327200:intron | 25.0% |
| ! | AATCTCATACACAAATTTGT+CGG | - | chr2_4:38779651-38779670 | None:intergenic | 25.0% |
| ! | TTTATATTCAACGATTAGGA+TGG | + | chr2_4:38779717-38779736 | Msa0327200:CDS | 25.0% |
| ! | TGATGTTTCTCAAAATGAAT+TGG | + | chr2_4:38779760-38779779 | Msa0327200:CDS | 25.0% |
| ! | TCTGAGATTTGAATTTACCT+TGG | - | chr2_4:38777633-38777652 | None:intergenic | 30.0% |
| ! | TTCGATTTGCATGAAGAAAT+TGG | - | chr2_4:38777657-38777676 | None:intergenic | 30.0% |
| !! | AATCGATTTTCACTGTTGAT+CGG | - | chr2_4:38777776-38777795 | None:intergenic | 30.0% |
| AAACTTACCAATAGTAGGAA+TGG | - | chr2_4:38778139-38778158 | None:intergenic | 30.0% | |
| TTGCAAATCAAAATTCACAC+AGG | - | chr2_4:38778214-38778233 | None:intergenic | 30.0% | |
| ! | TTGCAAGTTTTGCTTATGTA+TGG | + | chr2_4:38778228-38778247 | Msa0327200:intron | 30.0% |
| !!! | ACTATCGATTTTATCCTGAT+TGG | + | chr2_4:38778363-38778382 | Msa0327200:intron | 30.0% |
| !! | TAGTTTTACAAATGCCAATC+AGG | - | chr2_4:38778380-38778399 | None:intergenic | 30.0% |
| GAATTAACATGCAAAGAAGT+CGG | - | chr2_4:38778446-38778465 | None:intergenic | 30.0% | |
| GTTAAGTTCATTCGTGTTTA+TGG | + | chr2_4:38778707-38778726 | Msa0327200:intron | 30.0% | |
| TTGAATAAAATACCTTGTCC+TGG | - | chr2_4:38778977-38778996 | None:intergenic | 30.0% | |
| ATTCTCAACAAATTTGTGGA+TGG | - | chr2_4:38779219-38779238 | None:intergenic | 30.0% | |
| CTCAATTCTCAACAAATTTG+TGG | - | chr2_4:38779223-38779242 | None:intergenic | 30.0% | |
| TTCTAGATCATAATGTTCAC+TGG | + | chr2_4:38779326-38779345 | Msa0327200:intron | 30.0% | |
| TTAACAGCAACAATGATGAA+GGG | - | chr2_4:38779413-38779432 | None:intergenic | 30.0% | |
| ATTAACAGCAACAATGATGA+AGG | - | chr2_4:38779414-38779433 | None:intergenic | 30.0% | |
| AATATGATCCAGCAAAAACA+TGG | - | chr2_4:38779441-38779460 | None:intergenic | 30.0% | |
| AATTCTCTAATCTCTGAATC+AGG | + | chr2_4:38779571-38779590 | Msa0327200:intron | 30.0% | |
| TCATCAAATATGTACAGGTA+TGG | - | chr2_4:38779806-38779825 | None:intergenic | 30.0% | |
| AGTCATCATCAAATATGTAC+AGG | - | chr2_4:38779811-38779830 | None:intergenic | 30.0% | |
| !! | ATATTTGATGATGACTCTGA+TGG | + | chr2_4:38779815-38779834 | Msa0327200:CDS | 30.0% |
| ! | TCTGAGATTTGAATTTACCT+TGG | - | chr2_4:38777633-38777652 | None:intergenic | 30.0% |
| ! | TTCGATTTGCATGAAGAAAT+TGG | - | chr2_4:38777657-38777676 | None:intergenic | 30.0% |
| !! | AATCGATTTTCACTGTTGAT+CGG | - | chr2_4:38777776-38777795 | None:intergenic | 30.0% |
| AAACTTACCAATAGTAGGAA+TGG | - | chr2_4:38778139-38778158 | None:intergenic | 30.0% | |
| TTGCAAATCAAAATTCACAC+AGG | - | chr2_4:38778214-38778233 | None:intergenic | 30.0% | |
| ! | TTGCAAGTTTTGCTTATGTA+TGG | + | chr2_4:38778228-38778247 | Msa0327200:intron | 30.0% |
| !!! | ACTATCGATTTTATCCTGAT+TGG | + | chr2_4:38778363-38778382 | Msa0327200:intron | 30.0% |
| !! | TAGTTTTACAAATGCCAATC+AGG | - | chr2_4:38778380-38778399 | None:intergenic | 30.0% |
| GAATTAACATGCAAAGAAGT+CGG | - | chr2_4:38778446-38778465 | None:intergenic | 30.0% | |
| GTTAAGTTCATTCGTGTTTA+TGG | + | chr2_4:38778707-38778726 | Msa0327200:intron | 30.0% | |
| TTGAATAAAATACCTTGTCC+TGG | - | chr2_4:38778977-38778996 | None:intergenic | 30.0% | |
| ATTCTCAACAAATTTGTGGA+TGG | - | chr2_4:38779219-38779238 | None:intergenic | 30.0% | |
| CTCAATTCTCAACAAATTTG+TGG | - | chr2_4:38779223-38779242 | None:intergenic | 30.0% | |
| TTCTAGATCATAATGTTCAC+TGG | + | chr2_4:38779326-38779345 | Msa0327200:intron | 30.0% | |
| TTAACAGCAACAATGATGAA+GGG | - | chr2_4:38779413-38779432 | None:intergenic | 30.0% | |
| ATTAACAGCAACAATGATGA+AGG | - | chr2_4:38779414-38779433 | None:intergenic | 30.0% | |
| AATATGATCCAGCAAAAACA+TGG | - | chr2_4:38779441-38779460 | None:intergenic | 30.0% | |
| AATTCTCTAATCTCTGAATC+AGG | + | chr2_4:38779571-38779590 | Msa0327200:intron | 30.0% | |
| TCATCAAATATGTACAGGTA+TGG | - | chr2_4:38779806-38779825 | None:intergenic | 30.0% | |
| AGTCATCATCAAATATGTAC+AGG | - | chr2_4:38779811-38779830 | None:intergenic | 30.0% | |
| !! | ATATTTGATGATGACTCTGA+TGG | + | chr2_4:38779815-38779834 | Msa0327200:CDS | 30.0% |
| ! | CATCAACTTTTCTTCTTCCA+AGG | + | chr2_4:38777613-38777632 | Msa0327200:CDS | 35.0% |
| ATCTAAACAGATCGAACGAA+TGG | - | chr2_4:38777685-38777704 | None:intergenic | 35.0% | |
| ACTGAACGATGAAAAACAGA+AGG | - | chr2_4:38777708-38777727 | None:intergenic | 35.0% | |
| CCTACTATTGGTAAGTTTCT+CGG | + | chr2_4:38778141-38778160 | Msa0327200:intron | 35.0% | |
| TAACATTGAACGTGATCAAG+TGG | + | chr2_4:38778476-38778495 | Msa0327200:intron | 35.0% | |
| AAGTTCATTCGTGTTTATGG+AGG | + | chr2_4:38778710-38778729 | Msa0327200:intron | 35.0% | |
| ! | AGAACATTAGCTTCACTGTT+TGG | + | chr2_4:38778940-38778959 | Msa0327200:CDS | 35.0% |
| ! | GAACATTAGCTTCACTGTTT+GGG | + | chr2_4:38778941-38778960 | Msa0327200:CDS | 35.0% |
| CAAATATAAGACCTCCACAA+GGG | - | chr2_4:38779067-38779086 | None:intergenic | 35.0% | |
| ACAAATATAAGACCTCCACA+AGG | - | chr2_4:38779068-38779087 | None:intergenic | 35.0% | |
| TTGCTTGTACAACTCTGATT+TGG | + | chr2_4:38779283-38779302 | Msa0327200:intron | 35.0% | |
| TGCTTGTACAACTCTGATTT+GGG | + | chr2_4:38779284-38779303 | Msa0327200:intron | 35.0% | |
| !! | TCTGTCTTTTGGTAGTTGAA+TGG | + | chr2_4:38779484-38779503 | Msa0327200:intron | 35.0% |
| ATTCAACTATTCCTTGCTTC+AGG | + | chr2_4:38779668-38779687 | Msa0327200:CDS | 35.0% | |
| GGATATTGAAGCTTATGATG+CGG | + | chr2_4:38779694-38779713 | Msa0327200:CDS | 35.0% | |
| GCGGTTTATATTCAACGATT+AGG | + | chr2_4:38779713-38779732 | Msa0327200:CDS | 35.0% | |
| ! | CATCAACTTTTCTTCTTCCA+AGG | + | chr2_4:38777613-38777632 | Msa0327200:CDS | 35.0% |
| ATCTAAACAGATCGAACGAA+TGG | - | chr2_4:38777685-38777704 | None:intergenic | 35.0% | |
| ACTGAACGATGAAAAACAGA+AGG | - | chr2_4:38777708-38777727 | None:intergenic | 35.0% | |
| CCTACTATTGGTAAGTTTCT+CGG | + | chr2_4:38778141-38778160 | Msa0327200:intron | 35.0% | |
| TAACATTGAACGTGATCAAG+TGG | + | chr2_4:38778476-38778495 | Msa0327200:intron | 35.0% | |
| AAGTTCATTCGTGTTTATGG+AGG | + | chr2_4:38778710-38778729 | Msa0327200:intron | 35.0% | |
| ! | AGAACATTAGCTTCACTGTT+TGG | + | chr2_4:38778940-38778959 | Msa0327200:CDS | 35.0% |
| ! | GAACATTAGCTTCACTGTTT+GGG | + | chr2_4:38778941-38778960 | Msa0327200:CDS | 35.0% |
| CAAATATAAGACCTCCACAA+GGG | - | chr2_4:38779067-38779086 | None:intergenic | 35.0% | |
| ACAAATATAAGACCTCCACA+AGG | - | chr2_4:38779068-38779087 | None:intergenic | 35.0% | |
| TTGCTTGTACAACTCTGATT+TGG | + | chr2_4:38779283-38779302 | Msa0327200:intron | 35.0% | |
| TGCTTGTACAACTCTGATTT+GGG | + | chr2_4:38779284-38779303 | Msa0327200:intron | 35.0% | |
| !! | TCTGTCTTTTGGTAGTTGAA+TGG | + | chr2_4:38779484-38779503 | Msa0327200:intron | 35.0% |
| ATTCAACTATTCCTTGCTTC+AGG | + | chr2_4:38779668-38779687 | Msa0327200:CDS | 35.0% | |
| GGATATTGAAGCTTATGATG+CGG | + | chr2_4:38779694-38779713 | Msa0327200:CDS | 35.0% | |
| GCGGTTTATATTCAACGATT+AGG | + | chr2_4:38779713-38779732 | Msa0327200:CDS | 35.0% | |
| AACGTGGAATAGGAATTGTG+GGG | - | chr2_4:38777543-38777562 | None:intergenic | 40.0% | |
| CAACGTGGAATAGGAATTGT+GGG | - | chr2_4:38777544-38777563 | None:intergenic | 40.0% | |
| AGGTTTGATCAAGGAAGTGA+AGG | + | chr2_4:38777975-38777994 | Msa0327200:intron | 40.0% | |
| CAAGGAAGTGAAGGAGAAAA+CGG | + | chr2_4:38777984-38778003 | Msa0327200:CDS | 40.0% | |
| AAGGAAGTGAAGGAGAAAAC+GGG | + | chr2_4:38777985-38778004 | Msa0327200:CDS | 40.0% | |
| GAAGGAAATGCGAATTCTGA+TGG | + | chr2_4:38778047-38778066 | Msa0327200:CDS | 40.0% | |
| GAAATGCGAATTCTGATGGT+TGG | + | chr2_4:38778051-38778070 | Msa0327200:CDS | 40.0% | |
| AAGCTTGAGCTTGTAGAGAA+TGG | - | chr2_4:38778100-38778119 | None:intergenic | 40.0% | |
| ATTCTCTACAAGCTCAAGCT+TGG | + | chr2_4:38778099-38778118 | Msa0327200:CDS | 40.0% | |
| CTTACCAATAGTAGGAATGG+TGG | - | chr2_4:38778136-38778155 | None:intergenic | 40.0% | |
| CCGAGAAACTTACCAATAGT+AGG | - | chr2_4:38778144-38778163 | None:intergenic | 40.0% | |
| CACCTGTTGTGTTTAGACAT+CGG | + | chr2_4:38778303-38778322 | Msa0327200:intron | 40.0% | |
| AAAGACAAAAAGGAGGAGAG+GGG | - | chr2_4:38779044-38779063 | None:intergenic | 40.0% | |
| GAAAGACAAAAAGGAGGAGA+GGG | - | chr2_4:38779045-38779064 | None:intergenic | 40.0% | |
| ACAAGGGAAAGACAAAAAGG+AGG | - | chr2_4:38779051-38779070 | None:intergenic | 40.0% | |
| ! | TCCTTTTTGTCTTTCCCTTG+TGG | + | chr2_4:38779050-38779069 | Msa0327200:CDS | 40.0% |
| TCCACAAGGGAAAGACAAAA+AGG | - | chr2_4:38779054-38779073 | None:intergenic | 40.0% | |
| ! | TTTTTGTCTTTCCCTTGTGG+AGG | + | chr2_4:38779053-38779072 | Msa0327200:CDS | 40.0% |
| TTGTCGTTGACAGTAATGAC+AGG | + | chr2_4:38779084-38779103 | Msa0327200:CDS | 40.0% | |
| TGTCGTTGACAGTAATGACA+GGG | + | chr2_4:38779085-38779104 | Msa0327200:CDS | 40.0% | |
| GCTACATAGGATGTTGAATG+AGG | + | chr2_4:38779133-38779152 | Msa0327200:CDS | 40.0% | |
| AATTTCTGTCGAGCTTCTCA+TGG | + | chr2_4:38779378-38779397 | Msa0327200:intron | 40.0% | |
| ATTTCTGTCGAGCTTCTCAT+GGG | + | chr2_4:38779379-38779398 | Msa0327200:intron | 40.0% | |
| TCTCTAATCTCTGAATCAGG+AGG | + | chr2_4:38779574-38779593 | Msa0327200:intron | 40.0% | |
| TGTCAGTCTCTAAATCAGCT+AGG | + | chr2_4:38779606-38779625 | Msa0327200:CDS | 40.0% | |
| ACTATTCCTTGCTTCAGGAT+TGG | + | chr2_4:38779673-38779692 | Msa0327200:CDS | 40.0% | |
| CAATATCCAATCCTGAAGCA+AGG | - | chr2_4:38779682-38779701 | None:intergenic | 40.0% | |
| AACGTGGAATAGGAATTGTG+GGG | - | chr2_4:38777543-38777562 | None:intergenic | 40.0% | |
| CAACGTGGAATAGGAATTGT+GGG | - | chr2_4:38777544-38777563 | None:intergenic | 40.0% | |
| AGGTTTGATCAAGGAAGTGA+AGG | + | chr2_4:38777975-38777994 | Msa0327200:intron | 40.0% | |
| CAAGGAAGTGAAGGAGAAAA+CGG | + | chr2_4:38777984-38778003 | Msa0327200:CDS | 40.0% | |
| AAGGAAGTGAAGGAGAAAAC+GGG | + | chr2_4:38777985-38778004 | Msa0327200:CDS | 40.0% | |
| GAAGGAAATGCGAATTCTGA+TGG | + | chr2_4:38778047-38778066 | Msa0327200:CDS | 40.0% | |
| GAAATGCGAATTCTGATGGT+TGG | + | chr2_4:38778051-38778070 | Msa0327200:CDS | 40.0% | |
| AAGCTTGAGCTTGTAGAGAA+TGG | - | chr2_4:38778100-38778119 | None:intergenic | 40.0% | |
| ATTCTCTACAAGCTCAAGCT+TGG | + | chr2_4:38778099-38778118 | Msa0327200:CDS | 40.0% | |
| CTTACCAATAGTAGGAATGG+TGG | - | chr2_4:38778136-38778155 | None:intergenic | 40.0% | |
| CCGAGAAACTTACCAATAGT+AGG | - | chr2_4:38778144-38778163 | None:intergenic | 40.0% | |
| CACCTGTTGTGTTTAGACAT+CGG | + | chr2_4:38778303-38778322 | Msa0327200:intron | 40.0% | |
| AAAGACAAAAAGGAGGAGAG+GGG | - | chr2_4:38779044-38779063 | None:intergenic | 40.0% | |
| GAAAGACAAAAAGGAGGAGA+GGG | - | chr2_4:38779045-38779064 | None:intergenic | 40.0% | |
| ACAAGGGAAAGACAAAAAGG+AGG | - | chr2_4:38779051-38779070 | None:intergenic | 40.0% | |
| ! | TCCTTTTTGTCTTTCCCTTG+TGG | + | chr2_4:38779050-38779069 | Msa0327200:CDS | 40.0% |
| TCCACAAGGGAAAGACAAAA+AGG | - | chr2_4:38779054-38779073 | None:intergenic | 40.0% | |
| ! | TTTTTGTCTTTCCCTTGTGG+AGG | + | chr2_4:38779053-38779072 | Msa0327200:CDS | 40.0% |
| TTGTCGTTGACAGTAATGAC+AGG | + | chr2_4:38779084-38779103 | Msa0327200:CDS | 40.0% | |
| TGTCGTTGACAGTAATGACA+GGG | + | chr2_4:38779085-38779104 | Msa0327200:CDS | 40.0% | |
| GCTACATAGGATGTTGAATG+AGG | + | chr2_4:38779133-38779152 | Msa0327200:CDS | 40.0% | |
| AATTTCTGTCGAGCTTCTCA+TGG | + | chr2_4:38779378-38779397 | Msa0327200:intron | 40.0% | |
| ATTTCTGTCGAGCTTCTCAT+GGG | + | chr2_4:38779379-38779398 | Msa0327200:intron | 40.0% | |
| TCTCTAATCTCTGAATCAGG+AGG | + | chr2_4:38779574-38779593 | Msa0327200:intron | 40.0% | |
| TGTCAGTCTCTAAATCAGCT+AGG | + | chr2_4:38779606-38779625 | Msa0327200:CDS | 40.0% | |
| ACTATTCCTTGCTTCAGGAT+TGG | + | chr2_4:38779673-38779692 | Msa0327200:CDS | 40.0% | |
| CAATATCCAATCCTGAAGCA+AGG | - | chr2_4:38779682-38779701 | None:intergenic | 40.0% | |
| ! | GTGGGGTATGAGTTGGAAAT+TGG | - | chr2_4:38777526-38777545 | None:intergenic | 45.0% |
| AGGAATTGTGGGGTATGAGT+TGG | - | chr2_4:38777533-38777552 | None:intergenic | 45.0% | |
| GCAACGTGGAATAGGAATTG+TGG | - | chr2_4:38777545-38777564 | None:intergenic | 45.0% | |
| AAGAATGCTTTGCAGCAACG+TGG | - | chr2_4:38777559-38777578 | None:intergenic | 45.0% | |
| TCGCAAAGACAGAGAGAGAA+GGG | - | chr2_4:38777584-38777603 | None:intergenic | 45.0% | |
| ATCGCAAAGACAGAGAGAGA+AGG | - | chr2_4:38777585-38777604 | None:intergenic | 45.0% | |
| AGGAAGTGAAGGAGAAAACG+GGG | + | chr2_4:38777986-38778005 | Msa0327200:CDS | 45.0% | |
| CATTCACGAAGCTGTTCAGT+CGG | + | chr2_4:38778013-38778032 | Msa0327200:CDS | 45.0% | |
| CAGTCGGTTATTTGCGAAGA+AGG | + | chr2_4:38778029-38778048 | Msa0327200:CDS | 45.0% | |
| CTTGAGCTTGTAGAGAATGG+TGG | - | chr2_4:38778097-38778116 | None:intergenic | 45.0% | |
| GTCACCACCATTCCTACTAT+TGG | + | chr2_4:38778129-38778148 | Msa0327200:CDS | 45.0% | |
| GTCCGATGTCTAAACACAAC+AGG | - | chr2_4:38778308-38778327 | None:intergenic | 45.0% | |
| TTAGACATCGGACACACGTT+TGG | + | chr2_4:38778315-38778334 | Msa0327200:intron | 45.0% | |
| CACACGTTTGGTCTAAGTGT+CGG | + | chr2_4:38778327-38778346 | Msa0327200:intron | 45.0% | |
| ! | AGCTTCACTGTTTGGGATGT+TGG | + | chr2_4:38778948-38778967 | Msa0327200:CDS | 45.0% |
| ! | TTCACTGTTTGGGATGTTGG+AGG | + | chr2_4:38778951-38778970 | Msa0327200:CDS | 45.0% |
| AAGACAAAAAGGAGGAGAGG+GGG | - | chr2_4:38779043-38779062 | None:intergenic | 45.0% | |
| GGAAAGACAAAAAGGAGGAG+AGG | - | chr2_4:38779046-38779065 | None:intergenic | 45.0% | |
| TGACAGGGATAGAGTTGTTG+AGG | + | chr2_4:38779100-38779119 | Msa0327200:CDS | 45.0% | |
| CATCCTATGTAGCTCATCTC+TGG | - | chr2_4:38779126-38779145 | None:intergenic | 45.0% | |
| TGGTTCAATGCGTGTCTCTA+TGG | + | chr2_4:38779346-38779365 | Msa0327200:intron | 45.0% | |
| TAAATCAGCTAGGCCTTTCC+TGG | + | chr2_4:38779616-38779635 | Msa0327200:CDS | 45.0% | |
| AAATCAGCTAGGCCTTTCCT+GGG | + | chr2_4:38779617-38779636 | Msa0327200:CDS | 45.0% | |
| ! | GAAACATCAGTGTTTTCCCC+TGG | - | chr2_4:38779749-38779768 | None:intergenic | 45.0% |
| ! | GTGGGGTATGAGTTGGAAAT+TGG | - | chr2_4:38777526-38777545 | None:intergenic | 45.0% |
| AGGAATTGTGGGGTATGAGT+TGG | - | chr2_4:38777533-38777552 | None:intergenic | 45.0% | |
| GCAACGTGGAATAGGAATTG+TGG | - | chr2_4:38777545-38777564 | None:intergenic | 45.0% | |
| AAGAATGCTTTGCAGCAACG+TGG | - | chr2_4:38777559-38777578 | None:intergenic | 45.0% | |
| TCGCAAAGACAGAGAGAGAA+GGG | - | chr2_4:38777584-38777603 | None:intergenic | 45.0% | |
| ATCGCAAAGACAGAGAGAGA+AGG | - | chr2_4:38777585-38777604 | None:intergenic | 45.0% | |
| AGGAAGTGAAGGAGAAAACG+GGG | + | chr2_4:38777986-38778005 | Msa0327200:CDS | 45.0% | |
| CATTCACGAAGCTGTTCAGT+CGG | + | chr2_4:38778013-38778032 | Msa0327200:CDS | 45.0% | |
| CAGTCGGTTATTTGCGAAGA+AGG | + | chr2_4:38778029-38778048 | Msa0327200:CDS | 45.0% | |
| CTTGAGCTTGTAGAGAATGG+TGG | - | chr2_4:38778097-38778116 | None:intergenic | 45.0% | |
| GTCACCACCATTCCTACTAT+TGG | + | chr2_4:38778129-38778148 | Msa0327200:CDS | 45.0% | |
| GTCCGATGTCTAAACACAAC+AGG | - | chr2_4:38778308-38778327 | None:intergenic | 45.0% | |
| TTAGACATCGGACACACGTT+TGG | + | chr2_4:38778315-38778334 | Msa0327200:intron | 45.0% | |
| CACACGTTTGGTCTAAGTGT+CGG | + | chr2_4:38778327-38778346 | Msa0327200:intron | 45.0% | |
| ! | AGCTTCACTGTTTGGGATGT+TGG | + | chr2_4:38778948-38778967 | Msa0327200:CDS | 45.0% |
| ! | TTCACTGTTTGGGATGTTGG+AGG | + | chr2_4:38778951-38778970 | Msa0327200:CDS | 45.0% |
| AAGACAAAAAGGAGGAGAGG+GGG | - | chr2_4:38779043-38779062 | None:intergenic | 45.0% | |
| GGAAAGACAAAAAGGAGGAG+AGG | - | chr2_4:38779046-38779065 | None:intergenic | 45.0% | |
| TGACAGGGATAGAGTTGTTG+AGG | + | chr2_4:38779100-38779119 | Msa0327200:CDS | 45.0% | |
| CATCCTATGTAGCTCATCTC+TGG | - | chr2_4:38779126-38779145 | None:intergenic | 45.0% | |
| TGGTTCAATGCGTGTCTCTA+TGG | + | chr2_4:38779346-38779365 | Msa0327200:intron | 45.0% | |
| TAAATCAGCTAGGCCTTTCC+TGG | + | chr2_4:38779616-38779635 | Msa0327200:CDS | 45.0% | |
| AAATCAGCTAGGCCTTTCCT+GGG | + | chr2_4:38779617-38779636 | Msa0327200:CDS | 45.0% | |
| ! | GAAACATCAGTGTTTTCCCC+TGG | - | chr2_4:38779749-38779768 | None:intergenic | 45.0% |
| GCTTTGCAGCAACGTGGAAT+AGG | - | chr2_4:38777553-38777572 | None:intergenic | 50.0% | |
| !! | TGCAAGAGTGCTGCGTAGAA+AGG | + | chr2_4:38778836-38778855 | Msa0327200:intron | 50.0% |
| AGGGTTCAATGTGGAGACTG+TGG | + | chr2_4:38778911-38778930 | Msa0327200:intron | 50.0% | |
| AGACAAAAAGGAGGAGAGGG+GGG | - | chr2_4:38779042-38779061 | None:intergenic | 50.0% | |
| AGGCCAGAGATGAGCTACAT+AGG | + | chr2_4:38779120-38779139 | Msa0327200:CDS | 50.0% | |
| !! | ATTTGTCGGTTCTTGCTCCC+AGG | - | chr2_4:38779637-38779656 | None:intergenic | 50.0% |
| GATTAGGATGGAGCTCACCA+GGG | + | chr2_4:38779729-38779748 | Msa0327200:CDS | 50.0% | |
| ATTAGGATGGAGCTCACCAG+GGG | + | chr2_4:38779730-38779749 | Msa0327200:CDS | 50.0% | |
| GCTTTGCAGCAACGTGGAAT+AGG | - | chr2_4:38777553-38777572 | None:intergenic | 50.0% | |
| !! | TGCAAGAGTGCTGCGTAGAA+AGG | + | chr2_4:38778836-38778855 | Msa0327200:intron | 50.0% |
| AGGGTTCAATGTGGAGACTG+TGG | + | chr2_4:38778911-38778930 | Msa0327200:intron | 50.0% | |
| AGACAAAAAGGAGGAGAGGG+GGG | - | chr2_4:38779042-38779061 | None:intergenic | 50.0% | |
| AGGCCAGAGATGAGCTACAT+AGG | + | chr2_4:38779120-38779139 | Msa0327200:CDS | 50.0% | |
| !! | ATTTGTCGGTTCTTGCTCCC+AGG | - | chr2_4:38779637-38779656 | None:intergenic | 50.0% |
| GATTAGGATGGAGCTCACCA+GGG | + | chr2_4:38779729-38779748 | Msa0327200:CDS | 50.0% | |
| ATTAGGATGGAGCTCACCAG+GGG | + | chr2_4:38779730-38779749 | Msa0327200:CDS | 50.0% | |
| !! | ATGGTTGGTCTCGATGCAGC+TGG | + | chr2_4:38778066-38778085 | Msa0327200:CDS | 55.0% |
| ! | TGTTTGGGATGTTGGAGGCC+AGG | + | chr2_4:38778956-38778975 | Msa0327200:CDS | 55.0% |
| GACAAAAAGGAGGAGAGGGG+GGG | - | chr2_4:38779041-38779060 | None:intergenic | 55.0% | |
| TCGGTTCTTGCTCCCAGGAA+AGG | - | chr2_4:38779632-38779651 | None:intergenic | 55.0% | |
| CGATTAGGATGGAGCTCACC+AGG | + | chr2_4:38779728-38779747 | Msa0327200:CDS | 55.0% | |
| !! | ATGGTTGGTCTCGATGCAGC+TGG | + | chr2_4:38778066-38778085 | Msa0327200:CDS | 55.0% |
| ! | TGTTTGGGATGTTGGAGGCC+AGG | + | chr2_4:38778956-38778975 | Msa0327200:CDS | 55.0% |
| GACAAAAAGGAGGAGAGGGG+GGG | - | chr2_4:38779041-38779060 | None:intergenic | 55.0% | |
| TCGGTTCTTGCTCCCAGGAA+AGG | - | chr2_4:38779632-38779651 | None:intergenic | 55.0% | |
| CGATTAGGATGGAGCTCACC+AGG | + | chr2_4:38779728-38779747 | Msa0327200:CDS | 55.0% | |
| GGATGTTGGAGGCCAGGACA+AGG | + | chr2_4:38778962-38778981 | Msa0327200:CDS | 60.0% | |
| GGATGTTGGAGGCCAGGACA+AGG | + | chr2_4:38778962-38778981 | Msa0327200:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 38777523 | 38779844 | 38777523 | ID=Msa0327200;Name=Msa0327200 |
| chr2_4 | mRNA | 38777523 | 38779844 | 38777523 | ID=Msa0327200-mRNA-1;Parent=Msa0327200;Name=Msa0327200-mRNA-1;_AED=0.26;_eAED=0.28;_QI=0|0.5|0.2|0.8|1|0.6|5|0|250 |
| chr2_4 | exon | 38777523 | 38777634 | 38777523 | ID=Msa0327200-mRNA-1:exon:11617;Parent=Msa0327200-mRNA-1 |
| chr2_4 | exon | 38777977 | 38778150 | 38777977 | ID=Msa0327200-mRNA-1:exon:11618;Parent=Msa0327200-mRNA-1 |
| chr2_4 | exon | 38778913 | 38778983 | 38778913 | ID=Msa0327200-mRNA-1:exon:11619;Parent=Msa0327200-mRNA-1 |
| chr2_4 | exon | 38779014 | 38779154 | 38779014 | ID=Msa0327200-mRNA-1:exon:11620;Parent=Msa0327200-mRNA-1 |
| chr2_4 | exon | 38779593 | 38779844 | 38779593 | ID=Msa0327200-mRNA-1:exon:11621;Parent=Msa0327200-mRNA-1 |
| chr2_4 | CDS | 38777523 | 38777634 | 38777523 | ID=Msa0327200-mRNA-1:cds;Parent=Msa0327200-mRNA-1 |
| chr2_4 | CDS | 38777977 | 38778150 | 38777977 | ID=Msa0327200-mRNA-1:cds;Parent=Msa0327200-mRNA-1 |
| chr2_4 | CDS | 38778913 | 38778983 | 38778913 | ID=Msa0327200-mRNA-1:cds;Parent=Msa0327200-mRNA-1 |
| chr2_4 | CDS | 38779014 | 38779154 | 38779014 | ID=Msa0327200-mRNA-1:cds;Parent=Msa0327200-mRNA-1 |
| chr2_4 | CDS | 38779593 | 38779844 | 38779593 | ID=Msa0327200-mRNA-1:cds;Parent=Msa0327200-mRNA-1 |
| Gene Sequence |
| Protein sequence |
