Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0333870 | XP_003596480.1 | 96.117 | 103 | 4 | 0 | 1 | 103 | 1 | 103 | 2.79e-61 | 192 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0172450 | Msa0333870 | 0.803242 | 3.827860e-49 | -8.615850e-47 |
| Msa0291500 | Msa0333870 | 0.812010 | 5.256180e-51 | -8.615850e-47 |
| Msa0333870 | Msa0366890 | 0.810920 | 9.067764e-51 | -8.615850e-47 |
| Msa0333870 | Msa0534590 | 0.808122 | 3.615932e-50 | -8.615850e-47 |
| Msa0333870 | Msa0568820 | 0.811895 | 5.569613e-51 | -8.615850e-47 |
| Msa0333870 | Msa0619070 | 0.812981 | 3.225380e-51 | -8.615850e-47 |
| Msa0333870 | Msa0631120 | 0.828931 | 6.831390e-55 | -8.615850e-47 |
| Msa0333870 | Msa0709500 | 0.822480 | 2.316157e-53 | -8.615850e-47 |
| Msa0333870 | Msa0761940 | 0.805997 | 1.018902e-49 | -8.615850e-47 |
| Msa0333870 | Msa0790850 | 0.819582 | 1.076678e-52 | -8.615850e-47 |
| Msa0333870 | Msa0808270 | 0.811226 | 7.782297e-51 | -8.615850e-47 |
| Msa0333870 | Msa0902760 | 0.812938 | 3.295534e-51 | -8.615850e-47 |
| Msa0333870 | Msa0968590 | 0.810942 | 8.968649e-51 | -8.615850e-47 |
| Msa0333870 | Msa1013400 | 0.815652 | 8.284878e-52 | -8.615850e-47 |
| Msa0333870 | Msa1040400 | 0.819213 | 1.307154e-52 | -8.615850e-47 |
| Msa0333870 | Msa1040830 | 0.802673 | 5.017617e-49 | -8.615850e-47 |
| Msa0333870 | Msa1083150 | 0.830557 | 2.745997e-55 | -8.615850e-47 |
| Msa0333870 | Msa1093530 | 0.811690 | 6.172596e-51 | -8.615850e-47 |
| Msa0333870 | Msa1125760 | 0.816533 | 5.266628e-52 | -8.615850e-47 |
| Msa0333870 | Msa1127890 | 0.808017 | 3.807269e-50 | -8.615850e-47 |
| Msa0333870 | Msa1134110 | 0.801471 | 8.865853e-49 | -8.615850e-47 |
| Msa0333870 | Msa1165870 | 0.821992 | 3.005600e-53 | -8.615850e-47 |
| Msa0333870 | Msa1171360 | 0.819683 | 1.021131e-52 | -8.615850e-47 |
| Msa0333870 | Msa1187840 | 0.809962 | 1.459568e-50 | -8.615850e-47 |
| Msa0333870 | Msa1207270 | 0.810043 | 1.402245e-50 | -8.615850e-47 |
| Msa0333870 | Msa1218600 | 0.803910 | 2.782047e-49 | -8.615850e-47 |
| Msa0333870 | Msa1255040 | -0.803417 | 3.521254e-49 | -8.615850e-47 |
| Msa0333870 | Msa1283170 | 0.822869 | 1.880468e-53 | -8.615850e-47 |
| Msa0333870 | Msa1300870 | 0.812069 | 5.104006e-51 | -8.615850e-47 |
| Msa0333870 | Msa1316780 | 0.803024 | 4.245459e-49 | -8.615850e-47 |
| Msa0333870 | Msa1361100 | 0.806564 | 7.738543e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0333870 | MtrunA17_Chr2g0318421 | 96.117 | 103 | 4 | 0 | 1 | 103 | 1 | 103 | 2.57e-65 | 192 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 28 sgRNAs with CRISPR-Local
Find 214 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGAATTCAGTTATTTGTTT+AGG | 0.384801 | 2_4:+51943623 | Msa0333870:three_prime_UTR |
| CGCGGCAGACTTCTCATTTG+CGG | 0.410034 | 2_4:-51943446 | None:intergenic |
| TCTACGAATAAATAACTTGC+TGG | 0.413180 | 2_4:+51943521 | Msa0333870:exon |
| GGAACTAAAATCAAGGTTGC+TGG | 0.425506 | 2_4:+51940836 | Msa0333870:CDS |
| GCAATGGATACATCAGAATC+AGG | 0.460381 | 2_4:+51940815 | Msa0333870:intron |
| GAGTATACCTTGAGGTGCTT+CGG | 0.483494 | 2_4:-51940645 | None:intergenic |
| CGGTGAAGCGGCGCAGAGAA+AGG | 0.493829 | 2_4:-51940533 | None:intergenic |
| CTTCAATCTTAAATAACACT+TGG | 0.499964 | 2_4:-51943646 | None:intergenic |
| AAAACACTATCATAATGAAA+AGG | 0.518400 | 2_4:-51943688 | None:intergenic |
| GTCGGTTATGTCCATCGAAA+CGG | 0.525995 | 2_4:-51940612 | None:intergenic |
| TCTCTGCGCCGCTTCACCGT+CGG | 0.536437 | 2_4:+51940537 | Msa0333870:five_prime_UTR |
| AACAGGAAGGTGAAGCAGAA+TGG | 0.552894 | 2_4:+51943364 | Msa0333870:intron |
| AGAATCAGGAACTAAAATCA+AGG | 0.553458 | 2_4:+51940829 | Msa0333870:CDS |
| TTCAGACTTGGAAACTTTCG+CGG | 0.568580 | 2_4:-51943464 | None:intergenic |
| TCGCCATTGGATTGGACCGA+CGG | 0.568928 | 2_4:-51940553 | None:intergenic |
| TCACCGTCGGTCCAATCCAA+TGG | 0.575177 | 2_4:+51940550 | Msa0333870:exon |
| AAGTATCAAAATTTAATGAG+TGG | 0.578924 | 2_4:-51943557 | None:intergenic |
| TCATCTAAACTAAATTACAA+AGG | 0.586950 | 2_4:-51943604 | None:intergenic |
| CGAATAAATAACTTGCTGGA+TGG | 0.589204 | 2_4:+51943525 | Msa0333870:exon |
| TCTCAAATATCGACTGATGG+TGG | 0.596302 | 2_4:-51940485 | None:intergenic |
| CAAATATCGACTGATGGTGG+TGG | 0.597876 | 2_4:-51940482 | None:intergenic |
| ACTAAAATCAAGGTTGCTGG+TGG | 0.600237 | 2_4:+51940839 | Msa0333870:CDS |
| GGATTGGACCGACGGTGAAG+CGG | 0.604776 | 2_4:-51940545 | None:intergenic |
| GGAAGGTGAAGCAGAATGGA+AGG | 0.604858 | 2_4:+51943368 | Msa0333870:intron |
| ATCGTTTCCGAAGCACCTCA+AGG | 0.606213 | 2_4:+51940638 | Msa0333870:CDS |
| TGCTTCGGAAACGATGGTGT+CGG | 0.636322 | 2_4:-51940630 | None:intergenic |
| TTGAGGTGCTTCGGAAACGA+TGG | 0.645225 | 2_4:-51940636 | None:intergenic |
| GTAAACCTAAAACAGAGCTG+TGG | 0.680478 | 2_4:-51943748 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTATTATAATTTTTTAAAGA+AGG | + | chr2_4:51941718-51941737 | Msa0333870:intron | 10.0% |
| !!! | TTCCTTTTTTTTTTTTTTTG+TGG | + | chr2_4:51940761-51940780 | Msa0333870:intron | 15.0% |
| !! | AACCACAAAAAAAAAAAAAA+AGG | - | chr2_4:51940766-51940785 | None:intergenic | 15.0% |
| !! | AATAAAGAAAACTTACAAAA+TGG | - | chr2_4:51940870-51940889 | None:intergenic | 15.0% |
| !!! | TTATAATTTTTTAAAGAAGG+CGG | + | chr2_4:51941721-51941740 | Msa0333870:intron | 15.0% |
| !!! | AAAAATATGTTTAAAACATC+AGG | - | chr2_4:51942402-51942421 | None:intergenic | 15.0% |
| !! | AAAAACAAGAAGAACAAAAA+CGG | + | chr2_4:51940587-51940606 | Msa0333870:CDS | 20.0% |
| !!! | TTAATTTGTTTATCCAAACA+AGG | - | chr2_4:51941064-51941083 | None:intergenic | 20.0% |
| !! | AATCAAACTTATTGGATTAA+GGG | - | chr2_4:51941202-51941221 | None:intergenic | 20.0% |
| !! | AAATCAAACTTATTGGATTA+AGG | - | chr2_4:51941203-51941222 | None:intergenic | 20.0% |
| !! | TTAATCCAATAAGTTTGATT+TGG | + | chr2_4:51941202-51941221 | Msa0333870:intron | 20.0% |
| !! | AAAAAATGTCATCAAAATGA+GGG | - | chr2_4:51942681-51942700 | None:intergenic | 20.0% |
| !! | AAAAAAATGTCATCAAAATG+AGG | - | chr2_4:51942682-51942701 | None:intergenic | 20.0% |
| !!! | CATAAAGTTTTAAACAATGA+TGG | - | chr2_4:51943178-51943197 | None:intergenic | 20.0% |
| !!! | CATCATTGTTTAAAACTTTA+TGG | + | chr2_4:51943176-51943195 | Msa0333870:intron | 20.0% |
| !!! | TATTATGTTTTGCAAGTAAA+TGG | - | chr2_4:51943251-51943270 | None:intergenic | 20.0% |
| !! | AAGTATCAAAATTTAATGAG+TGG | - | chr2_4:51943560-51943579 | None:intergenic | 20.0% |
| !! | TCATCTAAACTAAATTACAA+AGG | - | chr2_4:51943607-51943626 | None:intergenic | 20.0% |
| !! | ATGAATTCAGTTATTTGTTT+AGG | + | chr2_4:51943623-51943642 | Msa0333870:three_prime_UTR | 20.0% |
| !! | AAAACACTATCATAATGAAA+AGG | - | chr2_4:51943691-51943710 | None:intergenic | 20.0% |
| ! | TAGAGAATCACAAGTTAAAT+GGG | + | chr2_4:51940936-51940955 | Msa0333870:intron | 25.0% |
| !! | ACCAAAGCATTAAAAAACTA+GGG | - | chr2_4:51940992-51941011 | None:intergenic | 25.0% |
| !! | AACCAAAGCATTAAAAAACT+AGG | - | chr2_4:51940993-51941012 | None:intergenic | 25.0% |
| !!! | TTTTTTAATGCTTTGGTTGA+TGG | + | chr2_4:51940995-51941014 | Msa0333870:intron | 25.0% |
| ! | AAATACCAACTTAGAATATG+AGG | - | chr2_4:51941311-51941330 | None:intergenic | 25.0% |
| !!! | ACAATGTAGTTTTTTTTGCA+TGG | + | chr2_4:51941487-51941506 | Msa0333870:intron | 25.0% |
| ! | GTTAAAACATATATGTGCTT+AGG | - | chr2_4:51941756-51941775 | None:intergenic | 25.0% |
| ! | TTAAAATGCATGGACATAAT+TGG | - | chr2_4:51942317-51942336 | None:intergenic | 25.0% |
| !! | ATTATGTCCATGCATTTTAA+TGG | + | chr2_4:51942317-51942336 | Msa0333870:intron | 25.0% |
| ! | CTTAAAAAATTGATCAGCAT+TGG | - | chr2_4:51942572-51942591 | None:intergenic | 25.0% |
| ! | TTCTATCAAACAATCATTCA+AGG | - | chr2_4:51942840-51942859 | None:intergenic | 25.0% |
| ! | AATGATTGTTTGATAGAACA+AGG | + | chr2_4:51942842-51942861 | Msa0333870:intron | 25.0% |
| ! | AAGTTATTTGTCATAACTGT+CGG | + | chr2_4:51942924-51942943 | Msa0333870:intron | 25.0% |
| ! | AGTCTATCAATAGGAAAATT+TGG | + | chr2_4:51942992-51943011 | Msa0333870:intron | 25.0% |
| ! | TTTGCATGATAATAGTTGTA+TGG | + | chr2_4:51943025-51943044 | Msa0333870:intron | 25.0% |
| ! | TTGCATGATAATAGTTGTAT+GGG | + | chr2_4:51943026-51943045 | Msa0333870:intron | 25.0% |
| ! | AATATTCTATACTTTCACAG+AGG | + | chr2_4:51943103-51943122 | Msa0333870:intron | 25.0% |
| !!! | ACTTTTTTTGTTTTCAGACT+TGG | - | chr2_4:51943479-51943498 | None:intergenic | 25.0% |
| ! | CTTCAATCTTAAATAACACT+TGG | - | chr2_4:51943649-51943668 | None:intergenic | 25.0% |
| ! | AAAAGGATGCAACAAAAATA+AGG | - | chr2_4:51943674-51943693 | None:intergenic | 25.0% |
| !! | TTTTCTCAAATATCGACTGA+TGG | - | chr2_4:51940491-51940510 | None:intergenic | 30.0% |
| !! | CTTTTGTTTATTTGCAGCAA+TGG | + | chr2_4:51940799-51940818 | Msa0333870:intron | 30.0% |
| AGAATCAGGAACTAAAATCA+AGG | + | chr2_4:51940829-51940848 | Msa0333870:CDS | 30.0% | |
| GACGAAGGCTAAAAATATAA+GGG | - | chr2_4:51940894-51940913 | None:intergenic | 30.0% | |
| GTAGAGAATCACAAGTTAAA+TGG | + | chr2_4:51940935-51940954 | Msa0333870:intron | 30.0% | |
| AGAGAATCACAAGTTAAATG+GGG | + | chr2_4:51940937-51940956 | Msa0333870:intron | 30.0% | |
| !!! | ACCCTAGTTTTTTAATGCTT+TGG | + | chr2_4:51940988-51941007 | Msa0333870:intron | 30.0% |
| CTTATTCATAACCACTCATA+TGG | - | chr2_4:51941100-51941119 | None:intergenic | 30.0% | |
| TTGCACCAAATCAAACTTAT+TGG | - | chr2_4:51941210-51941229 | None:intergenic | 30.0% | |
| ! | ATTGGATGTTGTTGTTGAAT+TGG | + | chr2_4:51941260-51941279 | Msa0333870:intron | 30.0% |
| ! | TTGGATGTTGTTGTTGAATT+GGG | + | chr2_4:51941261-51941280 | Msa0333870:intron | 30.0% |
| ACTTAGAATATGAGGAGATA+TGG | - | chr2_4:51941303-51941322 | None:intergenic | 30.0% | |
| TATCTCCTCATATTCTAAGT+TGG | + | chr2_4:51941303-51941322 | Msa0333870:intron | 30.0% | |
| ATCACTTAACTGTGTGATAT+AGG | + | chr2_4:51941388-51941407 | Msa0333870:intron | 30.0% | |
| !! | AATCACATTTACTTTTGCAC+TGG | + | chr2_4:51941529-51941548 | Msa0333870:intron | 30.0% |
| !! | TATTCTTTAAAGCATGCACT+TGG | + | chr2_4:51941609-51941628 | Msa0333870:intron | 30.0% |
| ! | ATAGTAGTTGCCTTGTATTT+TGG | + | chr2_4:51941659-51941678 | Msa0333870:intron | 30.0% |
| ! | TAGTAGTTGCCTTGTATTTT+GGG | + | chr2_4:51941660-51941679 | Msa0333870:intron | 30.0% |
| ! | GGATTTTCCATTAAAATGCA+TGG | - | chr2_4:51942327-51942346 | None:intergenic | 30.0% |
| TTGACACAAATACAACACTA+GGG | - | chr2_4:51942359-51942378 | None:intergenic | 30.0% | |
| TTTGACACAAATACAACACT+AGG | - | chr2_4:51942360-51942379 | None:intergenic | 30.0% | |
| TGTTCGTATTCTAATTACAC+AGG | - | chr2_4:51942528-51942547 | None:intergenic | 30.0% | |
| GAATACGAACAATTCACTAA+CGG | + | chr2_4:51942537-51942556 | Msa0333870:intron | 30.0% | |
| ATTCAAGGCAAAAATTCTGA+TGG | - | chr2_4:51942825-51942844 | None:intergenic | 30.0% | |
| ATCATAGACTCGATTGATAT+GGG | - | chr2_4:51942872-51942891 | None:intergenic | 30.0% | |
| TATCATAGACTCGATTGATA+TGG | - | chr2_4:51942873-51942892 | None:intergenic | 30.0% | |
| ATATCAATCGAGTCTATGAT+AGG | + | chr2_4:51942872-51942891 | Msa0333870:intron | 30.0% | |
| AGCCAAATAGAGAGTTAAAT+AGG | + | chr2_4:51942899-51942918 | Msa0333870:intron | 30.0% | |
| GCCAAATAGAGAGTTAAATA+GGG | + | chr2_4:51942900-51942919 | Msa0333870:intron | 30.0% | |
| CCAAATAGAGAGTTAAATAG+GGG | + | chr2_4:51942901-51942920 | Msa0333870:intron | 30.0% | |
| ATAACTGACAATAGTTAGCT+AGG | + | chr2_4:51942952-51942971 | Msa0333870:intron | 30.0% | |
| TTGTATGGGATATTGTTATC+AGG | + | chr2_4:51943040-51943059 | Msa0333870:intron | 30.0% | |
| AAAACTGATGAACAATTCAC+AGG | - | chr2_4:51943078-51943097 | None:intergenic | 30.0% | |
| TCACGAAGTATATTACAGAA+GGG | - | chr2_4:51943135-51943154 | None:intergenic | 30.0% | |
| TTTGCAAGTAAATGGAAATC+AGG | - | chr2_4:51943243-51943262 | None:intergenic | 30.0% | |
| !! | ACACTTTTTGATCTCTTCAT+GGG | - | chr2_4:51943394-51943413 | None:intergenic | 30.0% |
| !! | AACACTTTTTGATCTCTTCA+TGG | - | chr2_4:51943395-51943414 | None:intergenic | 30.0% |
| ! | TCTACGAATAAATAACTTGC+TGG | + | chr2_4:51943521-51943540 | Msa0333870:exon | 30.0% |
| CGACGAAGGCTAAAAATATA+AGG | - | chr2_4:51940895-51940914 | None:intergenic | 35.0% | |
| AAGTTAAATGGGGTTTAACG+CGG | + | chr2_4:51940947-51940966 | Msa0333870:intron | 35.0% | |
| GCAACGATTTGAGAAAATGT+TGG | - | chr2_4:51941033-51941052 | None:intergenic | 35.0% | |
| TTCTCAAATCGTTGCAATTC+AGG | + | chr2_4:51941038-51941057 | Msa0333870:intron | 35.0% | |
| AATCTCACATGTGAATATGC+TGG | + | chr2_4:51941134-51941153 | Msa0333870:intron | 35.0% | |
| TAATCAGTTGAGTAACTGGA+CGG | - | chr2_4:51941241-51941260 | None:intergenic | 35.0% | |
| CCAATAATCAGTTGAGTAAC+TGG | - | chr2_4:51941245-51941264 | None:intergenic | 35.0% | |
| CCAGTTACTCAACTGATTAT+TGG | + | chr2_4:51941242-51941261 | Msa0333870:intron | 35.0% | |
| AGTCATCATTCTTTGTCGAA+CGG | + | chr2_4:51941360-51941379 | Msa0333870:intron | 35.0% | |
| ACTGTGTGATATAGGAAATC+TGG | + | chr2_4:51941396-51941415 | Msa0333870:intron | 35.0% | |
| CTGTGTGATATAGGAAATCT+GGG | + | chr2_4:51941397-51941416 | Msa0333870:intron | 35.0% | |
| AGTTGAACGCAATTATAGGA+GGG | - | chr2_4:51941430-51941449 | None:intergenic | 35.0% | |
| GTACAGTTGAACGCAATTAT+AGG | - | chr2_4:51941434-51941453 | None:intergenic | 35.0% | |
| TCATTGCTACCATGAAGAAA+TGG | - | chr2_4:51941468-51941487 | None:intergenic | 35.0% | |
| !! | TTACTTTTGCACTGGATGTT+AGG | + | chr2_4:51941537-51941556 | Msa0333870:intron | 35.0% |
| ATCTGTTGAGTTCTTGAAGA+AGG | + | chr2_4:51941585-51941604 | Msa0333870:intron | 35.0% | |
| TCTGTTGAGTTCTTGAAGAA+GGG | + | chr2_4:51941586-51941605 | Msa0333870:intron | 35.0% | |
| CAAAGCAAACCCAAAATACA+AGG | - | chr2_4:51941672-51941691 | None:intergenic | 35.0% | |
| TGTAAAACGTGAAGAGAATG+TGG | + | chr2_4:51942144-51942163 | Msa0333870:intron | 35.0% | |
| !! | TGAAAAAGTTCTGAGAGAGA+AGG | + | chr2_4:51942243-51942262 | Msa0333870:intron | 35.0% |
| TGACACAAATACAACACTAG+GGG | - | chr2_4:51942358-51942377 | None:intergenic | 35.0% | |
| ! | ATAATGTTTTCTGCTCTGCT+GGG | - | chr2_4:51942487-51942506 | None:intergenic | 35.0% |
| TTACACAGGCAATTTAGTGA+TGG | - | chr2_4:51942514-51942533 | None:intergenic | 35.0% | |
| ! | TTTGCTCTTCTGTTTTGTCA+TGG | + | chr2_4:51942724-51942743 | Msa0333870:intron | 35.0% |
| ! | TTGCTCTTCTGTTTTGTCAT+GGG | + | chr2_4:51942725-51942744 | Msa0333870:intron | 35.0% |
| CATGTCATAATTGAGGACAT+TGG | - | chr2_4:51942787-51942806 | None:intergenic | 35.0% | |
| CCCCTATTTAACTCTCTATT+TGG | - | chr2_4:51942904-51942923 | None:intergenic | 35.0% | |
| CTCACGAAGTATATTACAGA+AGG | - | chr2_4:51943136-51943155 | None:intergenic | 35.0% | |
| !! | CGAATAAATAACTTGCTGGA+TGG | + | chr2_4:51943525-51943544 | Msa0333870:exon | 35.0% |
| ! | AAAAACCACAGCTCTGTTTT+AGG | + | chr2_4:51943743-51943762 | Msa0333870:three_prime_UTR | 35.0% |
| ! | TCTCAAATATCGACTGATGG+TGG | - | chr2_4:51940488-51940507 | None:intergenic | 40.0% |
| !! | TTGTTCCTGTTTTTCGCCAT+TGG | - | chr2_4:51940569-51940588 | None:intergenic | 40.0% |
| TGAAAAGCGAGTATACCTTG+AGG | - | chr2_4:51940656-51940675 | None:intergenic | 40.0% | |
| GCAATGGATACATCAGAATC+AGG | + | chr2_4:51940815-51940834 | Msa0333870:intron | 40.0% | |
| GGAACTAAAATCAAGGTTGC+TGG | + | chr2_4:51940836-51940855 | Msa0333870:CDS | 40.0% | |
| ACTAAAATCAAGGTTGCTGG+TGG | + | chr2_4:51940839-51940858 | Msa0333870:CDS | 40.0% | |
| TCACATGTGAATATGCTGGT+AGG | + | chr2_4:51941138-51941157 | Msa0333870:intron | 40.0% | |
| CAGTTGAACGCAATTATAGG+AGG | - | chr2_4:51941431-51941450 | None:intergenic | 40.0% | |
| ! | ACGTTACTGCCATTTCTTCA+TGG | + | chr2_4:51941456-51941475 | Msa0333870:intron | 40.0% |
| !! | TGGATGTTAGGTTCTAGACT+TGG | + | chr2_4:51941549-51941568 | Msa0333870:intron | 40.0% |
| ! | GTTTTACAGATCAAGTCGCA+GGG | - | chr2_4:51942132-51942151 | None:intergenic | 40.0% |
| AAAACGTGAAGAGAATGTGG+TGG | + | chr2_4:51942147-51942166 | Msa0333870:intron | 40.0% | |
| !! | GTTCTGAGAGAGAAGGAAAT+TGG | + | chr2_4:51942250-51942269 | Msa0333870:intron | 40.0% |
| AAAATCACGAAAACACCCCT+CGG | + | chr2_4:51942277-51942296 | Msa0333870:intron | 40.0% | |
| ! | GATAATGTTTTCTGCTCTGC+TGG | - | chr2_4:51942488-51942507 | None:intergenic | 40.0% |
| ATGGATGGGAGTCTATCAAT+AGG | + | chr2_4:51942983-51943002 | Msa0333870:intron | 40.0% | |
| ACTGATGAACAATTCACAGG+AGG | - | chr2_4:51943075-51943094 | None:intergenic | 40.0% | |
| GTGTTTACTCCACGACATAT+TGG | - | chr2_4:51943207-51943226 | None:intergenic | 40.0% | |
| GTAAATGGAAATCAGGAAGC+AGG | - | chr2_4:51943236-51943255 | None:intergenic | 40.0% | |
| TTCAGACTTGGAAACTTTCG+CGG | - | chr2_4:51943467-51943486 | None:intergenic | 40.0% | |
| GTAAACCTAAAACAGAGCTG+TGG | - | chr2_4:51943751-51943770 | None:intergenic | 40.0% | |
| !! | CAAATATCGACTGATGGTGG+TGG | - | chr2_4:51940485-51940504 | None:intergenic | 45.0% |
| !! | CCTGTTTTTCGCCATTGGAT+TGG | - | chr2_4:51940564-51940583 | None:intergenic | 45.0% |
| CCAATCCAATGGCGAAAAAC+AGG | + | chr2_4:51940561-51940580 | Msa0333870:exon | 45.0% | |
| GTCGGTTATGTCCATCGAAA+CGG | - | chr2_4:51940615-51940634 | None:intergenic | 45.0% | |
| ! | GAGTATACCTTGAGGTGCTT+CGG | - | chr2_4:51940648-51940667 | None:intergenic | 45.0% |
| ! | ATTATCAAGCATCGCGACGA+AGG | - | chr2_4:51940909-51940928 | None:intergenic | 45.0% |
| !! | GTTGCAATTCAGGCCTTGTT+TGG | + | chr2_4:51941048-51941067 | Msa0333870:intron | 45.0% |
| TGCAGCTTCTACCATATGAG+TGG | + | chr2_4:51941086-51941105 | Msa0333870:intron | 45.0% | |
| CGCAATTATAGGAGGGAAGA+GGG | - | chr2_4:51941423-51941442 | None:intergenic | 45.0% | |
| ACGCAATTATAGGAGGGAAG+AGG | - | chr2_4:51941424-51941443 | None:intergenic | 45.0% | |
| !! | TGTTGACGGATTTGCAGAGA+TGG | - | chr2_4:51941991-51942010 | None:intergenic | 45.0% |
| TGCATAGGAGAGAGTGAGAA+CGG | - | chr2_4:51942019-51942038 | None:intergenic | 45.0% | |
| TCTCCTATGCAAATCCGTTC+TGG | + | chr2_4:51942028-51942047 | Msa0333870:intron | 45.0% | |
| ACAAGAGAGAGATCCACAGA+CGG | - | chr2_4:51942068-51942087 | None:intergenic | 45.0% | |
| ! | CGTTTTACAGATCAAGTCGC+AGG | - | chr2_4:51942133-51942152 | None:intergenic | 45.0% |
| !! | GTTTTTCAGCAGAAACCGAG+GGG | - | chr2_4:51942295-51942314 | None:intergenic | 45.0% |
| !! | GGTTTTTCAGCAGAAACCGA+GGG | - | chr2_4:51942296-51942315 | None:intergenic | 45.0% |
| !! | TGGTTTTTCAGCAGAAACCG+AGG | - | chr2_4:51942297-51942316 | None:intergenic | 45.0% |
| ACAACACTAGGGGCAAACTT+GGG | - | chr2_4:51942348-51942367 | None:intergenic | 45.0% | |
| TACAACACTAGGGGCAAACT+TGG | - | chr2_4:51942349-51942368 | None:intergenic | 45.0% | |
| AGTTCAGTTCGCAGAGTTGA+TGG | + | chr2_4:51942627-51942646 | Msa0333870:intron | 45.0% | |
| TCCTCAATTATGACATGCGC+TGG | + | chr2_4:51942790-51942809 | Msa0333870:intron | 45.0% | |
| TCCAGCGCATGTCATAATTG+AGG | - | chr2_4:51942794-51942813 | None:intergenic | 45.0% | |
| ! | AGTTAGCTAGGAAGCGTAGA+TGG | + | chr2_4:51942964-51942983 | Msa0333870:intron | 45.0% |
| AACAATTCACAGGAGGTTCG+AGG | - | chr2_4:51943068-51943087 | None:intergenic | 45.0% | |
| !!! | GCATGCTTTTGCTCTGAAAC+AGG | + | chr2_4:51943347-51943366 | Msa0333870:intron | 45.0% |
| !!! | GCTTTTGCTCTGAAACAGGA+AGG | + | chr2_4:51943351-51943370 | Msa0333870:intron | 45.0% |
| AACAGGAAGGTGAAGCAGAA+TGG | + | chr2_4:51943364-51943383 | Msa0333870:intron | 45.0% | |
| !! | CAAAAACGGTGCCGTTTCGA+TGG | + | chr2_4:51940601-51940620 | Msa0333870:CDS | 50.0% |
| TGCTTCGGAAACGATGGTGT+CGG | - | chr2_4:51940633-51940652 | None:intergenic | 50.0% | |
| ! | TTGAGGTGCTTCGGAAACGA+TGG | - | chr2_4:51940639-51940658 | None:intergenic | 50.0% |
| ! | ATCGTTTCCGAAGCACCTCA+AGG | + | chr2_4:51940638-51940657 | Msa0333870:CDS | 50.0% |
| GAGAGTCTGAGCTGCATGAA+AGG | - | chr2_4:51941869-51941888 | None:intergenic | 50.0% | |
| ! | GAGATGGTGGCTTGCAGAAT+CGG | - | chr2_4:51941919-51941938 | None:intergenic | 50.0% |
| GAGAGTTGTAGAGGAGATGG+TGG | - | chr2_4:51941932-51941951 | None:intergenic | 50.0% | |
| CGAGAGAGTTGTAGAGGAGA+TGG | - | chr2_4:51941935-51941954 | None:intergenic | 50.0% | |
| ! | GACGGATTTGCAGAGATGGA+TGG | - | chr2_4:51941987-51942006 | None:intergenic | 50.0% |
| TGAGAACGGGTCGTTGTTGA+CGG | - | chr2_4:51942005-51942024 | None:intergenic | 50.0% | |
| GCATAGGAGAGAGTGAGAAC+GGG | - | chr2_4:51942018-51942037 | None:intergenic | 50.0% | |
| CTATGCAAATCCGTTCTGGC+CGG | + | chr2_4:51942032-51942051 | Msa0333870:intron | 50.0% | |
| ! | GTGAAGAGAATGTGGTGGTG+AGG | + | chr2_4:51942152-51942171 | Msa0333870:intron | 50.0% |
| ! | AGAGAATGTGGTGGTGAGGA+TGG | + | chr2_4:51942156-51942175 | Msa0333870:intron | 50.0% |
| ! | AGCTAGGAAGCGTAGATGGA+TGG | + | chr2_4:51942968-51942987 | Msa0333870:intron | 50.0% |
| ! | GCTAGGAAGCGTAGATGGAT+GGG | + | chr2_4:51942969-51942988 | Msa0333870:intron | 50.0% |
| ATGGTGCGTCCAATATGTCG+TGG | + | chr2_4:51943195-51943214 | Msa0333870:intron | 50.0% | |
| GGAAGGTGAAGCAGAATGGA+AGG | + | chr2_4:51943368-51943387 | Msa0333870:intron | 50.0% | |
| TCACCGTCGGTCCAATCCAA+TGG | + | chr2_4:51940550-51940569 | Msa0333870:exon | 55.0% | |
| ! | TCGCCATTGGATTGGACCGA+CGG | - | chr2_4:51940556-51940575 | None:intergenic | 55.0% |
| !! | CATGCACTTGGTGCACTGCA+AGG | + | chr2_4:51941621-51941640 | Msa0333870:intron | 55.0% |
| !! | ACTTGGTGCACTGCAAGGTG+TGG | + | chr2_4:51941626-51941645 | Msa0333870:intron | 55.0% |
| !! | TTGCAGAATCGGTGGCGGAA+CGG | - | chr2_4:51941908-51941927 | None:intergenic | 55.0% |
| ! | ATGGTGGCTTGCAGAATCGG+TGG | - | chr2_4:51941916-51941935 | None:intergenic | 55.0% |
| GGTGTGCGAGAGAGTTGTAG+AGG | - | chr2_4:51941941-51941960 | None:intergenic | 55.0% | |
| ACTCTCTCGCACACCCTTTC+CGG | + | chr2_4:51941946-51941965 | Msa0333870:intron | 55.0% | |
| GAGATGGATGGAGTCGAGGA+CGG | - | chr2_4:51941975-51941994 | None:intergenic | 55.0% | |
| TGCAGAGATGGATGGAGTCG+AGG | - | chr2_4:51941979-51941998 | None:intergenic | 55.0% | |
| ! | CGGCCAGAACGGATTTGCAT+AGG | - | chr2_4:51942034-51942053 | None:intergenic | 55.0% |
| AGAGAGAGATCCACAGACGG+TGG | - | chr2_4:51942065-51942084 | None:intergenic | 55.0% | |
| ! | GAATGTGGTGGTGAGGATGG+AGG | + | chr2_4:51942159-51942178 | Msa0333870:intron | 55.0% |
| TGGTGAGGATGGAGGTGGAT+CGG | + | chr2_4:51942167-51942186 | Msa0333870:intron | 55.0% | |
| GGTGAAACACAGGGACAACG+TGG | + | chr2_4:51942205-51942224 | Msa0333870:intron | 55.0% | |
| GAAACACAGGGACAACGTGG+TGG | + | chr2_4:51942208-51942227 | Msa0333870:intron | 55.0% | |
| CGCGGCAGACTTCTCATTTG+CGG | - | chr2_4:51943449-51943468 | None:intergenic | 55.0% | |
| GGATTGGACCGACGGTGAAG+CGG | - | chr2_4:51940548-51940567 | None:intergenic | 60.0% | |
| !! | AGAATCGGTGGCGGAACGGT+GGG | - | chr2_4:51941904-51941923 | None:intergenic | 60.0% |
| ! | GTGGCTTGCAGAATCGGTGG+CGG | - | chr2_4:51941913-51941932 | None:intergenic | 60.0% |
| ATGGATGGAGTCGAGGACGG+TGG | - | chr2_4:51941972-51941991 | None:intergenic | 60.0% | |
| GATCCACAGACGGTGGACGA+TGG | - | chr2_4:51942058-51942077 | None:intergenic | 60.0% | |
| ! | TGTGGTGGTGAGGATGGAGG+TGG | + | chr2_4:51942162-51942181 | Msa0333870:intron | 60.0% |
| GGATGGAGGTGGATCGGAGA+AGG | + | chr2_4:51942173-51942192 | Msa0333870:intron | 60.0% | |
| TGGAGGTGGATCGGAGAAGG+CGG | + | chr2_4:51942176-51942195 | Msa0333870:intron | 60.0% | |
| ! | CGGCGTGGTGGTGAAACACA+GGG | + | chr2_4:51942196-51942215 | Msa0333870:intron | 60.0% |
| ACACAGGGACAACGTGGTGG+TGG | + | chr2_4:51942211-51942230 | Msa0333870:intron | 60.0% | |
| CGGTGAAGCGGCGCAGAGAA+AGG | - | chr2_4:51940536-51940555 | None:intergenic | 65.0% | |
| TCTCTGCGCCGCTTCACCGT+CGG | + | chr2_4:51940537-51940556 | Msa0333870:five_prime_UTR | 65.0% | |
| !! | CAGAATCGGTGGCGGAACGG+TGG | - | chr2_4:51941905-51941924 | None:intergenic | 65.0% |
| TCGAGGACGGTGGCCGGAAA+GGG | - | chr2_4:51941962-51941981 | None:intergenic | 65.0% | |
| ATGGAGTCGAGGACGGTGGC+CGG | - | chr2_4:51941968-51941987 | None:intergenic | 65.0% | |
| TGGACGATGGCCGGCCAGAA+CGG | - | chr2_4:51942045-51942064 | None:intergenic | 65.0% | |
| CACAGACGGTGGACGATGGC+CGG | - | chr2_4:51942054-51942073 | None:intergenic | 65.0% | |
| ! | GCGGCGTGGTGGTGAAACAC+AGG | + | chr2_4:51942195-51942214 | Msa0333870:intron | 65.0% |
| GTCGAGGACGGTGGCCGGAA+AGG | - | chr2_4:51941963-51941982 | None:intergenic | 70.0% | |
| CGGCCATCGTCCACCGTCTG+TGG | + | chr2_4:51942052-51942071 | Msa0333870:intron | 70.0% | |
| GTGGATCGGAGAAGGCGGCG+TGG | + | chr2_4:51942181-51942200 | Msa0333870:intron | 70.0% | |
| GATCGGAGAAGGCGGCGTGG+TGG | + | chr2_4:51942184-51942203 | Msa0333870:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 51940437 | 51943771 | 51940437 | ID=Msa0333870;Name=Msa0333870 |
| chr2_4 | mRNA | 51940437 | 51943771 | 51940437 | ID=Msa0333870-mRNA-1;Parent=Msa0333870;Name=Msa0333870-mRNA-1;_AED=0.00;_eAED=0.00;_QI=132|1|1|1|0.5|1|3|240|103 |
| chr2_4 | exon | 51940437 | 51940659 | 51940437 | ID=Msa0333870-mRNA-1:exon:15584;Parent=Msa0333870-mRNA-1 |
| chr2_4 | exon | 51940816 | 51940873 | 51940816 | ID=Msa0333870-mRNA-1:exon:15585;Parent=Msa0333870-mRNA-1 |
| chr2_4 | exon | 51943369 | 51943771 | 51943369 | ID=Msa0333870-mRNA-1:exon:15586;Parent=Msa0333870-mRNA-1 |
| chr2_4 | five_prime_UTR | 51940437 | 51940568 | 51940437 | ID=Msa0333870-mRNA-1:five_prime_utr;Parent=Msa0333870-mRNA-1 |
| chr2_4 | CDS | 51940569 | 51940659 | 51940569 | ID=Msa0333870-mRNA-1:cds;Parent=Msa0333870-mRNA-1 |
| chr2_4 | CDS | 51940816 | 51940873 | 51940816 | ID=Msa0333870-mRNA-1:cds;Parent=Msa0333870-mRNA-1 |
| chr2_4 | CDS | 51943369 | 51943531 | 51943369 | ID=Msa0333870-mRNA-1:cds;Parent=Msa0333870-mRNA-1 |
| chr2_4 | three_prime_UTR | 51943532 | 51943771 | 51943532 | ID=Msa0333870-mRNA-1:three_prime_utr;Parent=Msa0333870-mRNA-1 |
| Gene Sequence |
| Protein sequence |
