AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0808270


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0808270 MtrunA17_Chr5g0423171 100.000 129 0 0 1 129 1 129 4.52e-88 251
Msa0808270 MtrunA17_Chr3g0104151 84.211 38 6 0 92 129 17 54 4.22e-13 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0808270 AT1G29990.1 86.047 129 18 0 1 129 1 129 3.33e-77 224

Find 42 sgRNAs with CRISPR-Local

Find 361 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTTTCACAAATTCGATTTC+TGG 0.151221 5_3:+32244787 None:intergenic
ACCTTTCCACCTTCTTTCTT+TGG 0.210529 5_3:+32239853 None:intergenic
TGTTTAGTATTGTCTCATTA+TGG 0.264108 5_3:-32239764 Msa0808270:three_prime_UTR
AAGCATTAAGATCATGTTAA+TGG 0.279081 5_3:-32239681 Msa0808270:three_prime_UTR
TGATGCCACGGTTCAAGATT+TGG 0.316433 5_3:-32240933 Msa0808270:CDS
TGTACTTGTTAAGCAAGATT+TGG 0.330090 5_3:-32244018 Msa0808270:CDS
CGAAAATGAGCTCGTTCTTA+AGG 0.364571 5_3:-32244519 Msa0808270:intron
TAGAGATCTTCAACGCGAAT+TGG 0.368259 5_3:-32244719 Msa0808270:CDS
TGCTCAAACAAACTTGTAGA+TGG 0.369017 5_3:-32239793 Msa0808270:three_prime_UTR
GCAAATGTTTACAAGTTGAT+TGG 0.380956 5_3:-32244044 Msa0808270:CDS
TGTGAGAGTGGTTTCTGTCT+TGG 0.394070 5_3:+32239825 None:intergenic
CGATCTCAACAAGCTTCAAA+AGG 0.400711 5_3:-32244683 Msa0808270:CDS
CAATCTCTGCAGGCTGGGAA+AGG 0.456730 5_3:-32239978 Msa0808270:CDS
AAGATGCAATCTCTGCAGGC+TGG 0.465322 5_3:-32239984 Msa0808270:CDS
TCTCTTGCGGACATTTGCAT+TGG 0.483042 5_3:+32243989 None:intergenic
ACTGTAACTTGACCGTTCAT+AGG 0.485267 5_3:-32239923 Msa0808270:three_prime_UTR
ACAAAAGATGCAATCTCTGC+AGG 0.504546 5_3:-32239988 Msa0808270:CDS
AATCTCTGCAGGCTGGGAAA+GGG 0.505659 5_3:-32239977 Msa0808270:CDS
AGATGCAATCTCTGCAGGCT+GGG 0.519263 5_3:-32239983 Msa0808270:CDS
AAATCTTGCTTAACAAGTAC+AGG 0.520028 5_3:+32244020 None:intergenic
AAATGTATTCAATTCTCTTG+CGG 0.528071 5_3:+32243976 None:intergenic
GATCTCAACAAGCTTCAAAA+GGG 0.534109 5_3:-32244682 Msa0808270:intron
TTTGGCATCAAAAGTCACAT+TGG 0.541954 5_3:+32239871 None:intergenic
TTCGATTTCTGGCACACTGA+GGG 0.542358 5_3:+32244798 None:intergenic
GCAGAATAGCAAGAAAGAAA+CGG 0.544496 5_3:-32240903 Msa0808270:intron
CTCTTCCAAATCTTGAACCG+TGG 0.545459 5_3:+32240928 None:intergenic
TTACAGTAAACAAACAATCA+AGG 0.551424 5_3:+32239939 None:intergenic
CAGGAAGCGTCTTGATGCCA+CGG 0.578703 5_3:-32240945 Msa0808270:CDS
GCAAAACTAGCATGTGAGAG+TGG 0.587891 5_3:+32239813 None:intergenic
TGTTAAGCAAGATTTGGCTG+AGG 0.593363 5_3:-32244012 Msa0808270:CDS
GCGTTGAAGATCTCTAATGT+TGG 0.594934 5_3:+32244726 None:intergenic
AATCGAATTTGTGAAAGCAA+AGG 0.600362 5_3:-32244782 Msa0808270:five_prime_UTR
TTGATGCCAAAGAAAGAAGG+TGG 0.601133 5_3:-32239859 Msa0808270:three_prime_UTR
AAGAAGTACACTATTCAACT+TGG 0.603063 5_3:-32244542 Msa0808270:CDS
GCCAAAGAAAGAAGGTGGAA+AGG 0.618679 5_3:-32239854 Msa0808270:three_prime_UTR
GTGAAAGCAAAGGAAGGAGG+AGG 0.627755 5_3:-32244772 Msa0808270:five_prime_UTR
TCTGCAGGCTGGGAAAGGGA+AGG 0.640473 5_3:-32239973 Msa0808270:CDS
GAATTTGTGAAAGCAAAGGA+AGG 0.649479 5_3:-32244778 Msa0808270:five_prime_UTR
GTAACTTGACCGTTCATAGG+TGG 0.669511 5_3:-32239920 Msa0808270:three_prime_UTR
TTTGTGAAAGCAAAGGAAGG+AGG 0.670673 5_3:-32244775 Msa0808270:five_prime_UTR
ACTCATTCACCACCTATGAA+CGG 0.679282 5_3:+32239911 None:intergenic
ATTCGATTTCTGGCACACTG+AGG 0.682370 5_3:+32244797 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTTCTTTCAAT+AGG - chr5_3:32240348-32240367 Msa0808270:intron 10.0%
!! TAATTTATTCATAGATAAAA+GGG - chr5_3:32240840-32240859 Msa0808270:intron 10.0%
!!! AATAAAATTCTAAAACAAAA+TGG + chr5_3:32242300-32242319 None:intergenic 10.0%
!! AATAATTACAAAATAACATT+TGG - chr5_3:32243613-32243632 Msa0808270:intron 10.0%
!!! CATTATTTTATTTTTTTAAG+TGG + chr5_3:32244807-32244826 None:intergenic 10.0%
!! CACTTAAAAAAATAAAATAA+TGG - chr5_3:32244805-32244824 Msa0808270:five_prime_UTR 10.0%
!!! CAAACTTTTTTTTTAAATCT+CGG + chr5_3:32240116-32240135 None:intergenic 15.0%
!!! GTTATTTATTTTCTTGATTT+TGG - chr5_3:32240511-32240530 Msa0808270:intron 15.0%
!! AAATAATCACTTCAAAATAT+TGG - chr5_3:32240724-32240743 Msa0808270:intron 15.0%
!!! CTATTTTTTCGTTATTATTT+TGG - chr5_3:32240805-32240824 Msa0808270:intron 15.0%
!! GTAATTTATTCATAGATAAA+AGG - chr5_3:32240839-32240858 Msa0808270:intron 15.0%
!! TAAAATTATGTATTAGCAAA+AGG - chr5_3:32241434-32241453 Msa0808270:intron 15.0%
!! ATAAGATAATATGATGAATA+TGG - chr5_3:32241780-32241799 Msa0808270:intron 15.0%
!! ATGAAATAGTATAATGAATA+TGG - chr5_3:32241803-32241822 Msa0808270:intron 15.0%
!!! ATTTTGTATTCTAAAATATC+AGG - chr5_3:32242722-32242741 Msa0808270:intron 15.0%
!!! TTTTGTATTCTAAAATATCA+GGG - chr5_3:32242723-32242742 Msa0808270:intron 15.0%
!! TTTGTAAGTTTGTAATAAAT+TGG - chr5_3:32243131-32243150 Msa0808270:intron 15.0%
!! TTGTAAGTTTGTAATAAATT+GGG - chr5_3:32243132-32243151 Msa0808270:intron 15.0%
!!! ATAAAAAGATGATTTTGTAT+TGG + chr5_3:32243343-32243362 None:intergenic 15.0%
!!! ATAAGAGTATTTTAGTTAAA+AGG - chr5_3:32244220-32244239 Msa0808270:intron 15.0%
!!! TTAAAAGGTATATTTTATCT+TGG - chr5_3:32244235-32244254 Msa0808270:intron 15.0%
!!! TGTATTTAATTTTTCTTAAG+AGG - chr5_3:32244265-32244284 Msa0808270:intron 15.0%
!! AAACCCTAAAATACATAAAA+GGG + chr5_3:32239947-32239966 None:intergenic 20.0%
!! AAAACCCTAAAATACATAAA+AGG + chr5_3:32239948-32239967 None:intergenic 20.0%
!!! TTAGTTTGATAACTAGAATT+AGG - chr5_3:32240187-32240206 Msa0808270:intron 20.0%
!!! TGGTAATTTTTGATACATTT+AGG - chr5_3:32240229-32240248 Msa0808270:intron 20.0%
!!! ATTTATTTTCTTGATTTTGG+AGG - chr5_3:32240514-32240533 Msa0808270:intron 20.0%
!!! ACGAAACAGATAATTTTTTT+AGG + chr5_3:32240564-32240583 None:intergenic 20.0%
!!! TATTATTTTGGATGAAGAAT+AGG - chr5_3:32240817-32240836 Msa0808270:intron 20.0%
!! AAAATGGAAATAAACTCTTT+AGG + chr5_3:32240922-32240941 None:intergenic 20.0%
!!! TTAGAGAAATATGTTGTTTA+AGG - chr5_3:32241055-32241074 Msa0808270:intron 20.0%
!! TACAAAAATAAGGATGAAAA+TGG - chr5_3:32241172-32241191 Msa0808270:intron 20.0%
!!! GGAAATTTTTTACATTTGAT+GGG + chr5_3:32241277-32241296 None:intergenic 20.0%
!! TTGTAGTAGATAAATAACTT+TGG - chr5_3:32241536-32241555 Msa0808270:intron 20.0%
!! AATAGTATAATGAATATGGA+TGG - chr5_3:32241807-32241826 Msa0808270:intron 20.0%
!!! TTTGTATTTCAAGTTCTTAT+TGG - chr5_3:32242238-32242257 Msa0808270:intron 20.0%
!! ATAATACATATTGTTCGATA+TGG - chr5_3:32242270-32242289 Msa0808270:intron 20.0%
!! ATGTTTAATTACATCAGTAT+TGG - chr5_3:32242692-32242711 Msa0808270:intron 20.0%
!! AATAAAACAGTATACAATGA+GGG + chr5_3:32242991-32243010 None:intergenic 20.0%
!! AAATAAAACAGTATACAATG+AGG + chr5_3:32242992-32243011 None:intergenic 20.0%
!!! ATGTAACATTTTTTACTTAG+CGG + chr5_3:32243033-32243052 None:intergenic 20.0%
!!! CTTCATTTTAGATATTGTTA+TGG - chr5_3:32243396-32243415 Msa0808270:intron 20.0%
!!! GACTTTTAAATTATTTCTCA+TGG - chr5_3:32243588-32243607 Msa0808270:intron 20.0%
!! ATACAAAAACGTATATTTCA+AGG + chr5_3:32244717-32244736 None:intergenic 20.0%
!! AAAAAGATGAACGATTTTGA+AGG + chr5_3:32239832-32239851 None:intergenic 25.0%
!! GTACCCTTTTATGTATTTTA+GGG - chr5_3:32239941-32239960 Msa0808270:three_prime_UTR 25.0%
!! TTGATTTTCGAATGTGTATT+CGG - chr5_3:32240160-32240179 Msa0808270:intron 25.0%
! TAGAATTAGGATACAAACTA+AGG - chr5_3:32240200-32240219 Msa0808270:intron 25.0%
!!! TTTTTTCTTTCAATAGGAGT+TGG - chr5_3:32240354-32240373 Msa0808270:intron 25.0%
! AAATGTATTCAATTCTCTTG+CGG + chr5_3:32240465-32240484 None:intergenic 25.0%
! AGTATATGATTTGATTCATC+TGG - chr5_3:32240608-32240627 Msa0808270:intron 25.0%
! TTGATTAAAAAGTAACCACT+TGG - chr5_3:32240666-32240685 Msa0808270:intron 25.0%
! AATTCATTGTTTGTAAGTAC+AGG + chr5_3:32240884-32240903 None:intergenic 25.0%
! AACAATGAATTTGACTATCT+TGG - chr5_3:32240893-32240912 Msa0808270:intron 25.0%
! AAAAACTAGTTCATCGTTAT+AGG + chr5_3:32240955-32240974 None:intergenic 25.0%
! ATCAACAAAAATCAAGTCTA+GGG + chr5_3:32241012-32241031 None:intergenic 25.0%
! TATCAACAAAAATCAAGTCT+AGG + chr5_3:32241013-32241032 None:intergenic 25.0%
! TGATATACGAAAGACTTAAT+TGG - chr5_3:32241028-32241047 Msa0808270:intron 25.0%
!! AGAAATATGTTGTTTAAGGA+TGG - chr5_3:32241059-32241078 Msa0808270:intron 25.0%
!! GAAATATGTTGTTTAAGGAT+GGG - chr5_3:32241060-32241079 Msa0808270:intron 25.0%
! TTCCATTGTGTACAAAAATA+AGG - chr5_3:32241162-32241181 Msa0808270:intron 25.0%
!!! ATCCTTATTTTTGTACACAA+TGG + chr5_3:32241167-32241186 None:intergenic 25.0%
!!! CGGAAATTTTTTACATTTGA+TGG + chr5_3:32241278-32241297 None:intergenic 25.0%
! TTTATCTACTACAATCTACA+AGG + chr5_3:32241530-32241549 None:intergenic 25.0%
! GAATAGTGGTATATTAATTC+TGG - chr5_3:32241829-32241848 Msa0808270:intron 25.0%
!!! TGATTAAACATTTTGAGAAG+TGG - chr5_3:32242103-32242122 Msa0808270:intron 25.0%
! GAAATACAAAGAGAGTAAAT+TGG + chr5_3:32242228-32242247 None:intergenic 25.0%
!!! ACATGAAAGTGTTGAAATTT+GGG + chr5_3:32242676-32242695 None:intergenic 25.0%
!!! AACATGAAAGTGTTGAAATT+TGG + chr5_3:32242677-32242696 None:intergenic 25.0%
! ATAAAACAGTATACAATGAG+GGG + chr5_3:32242990-32243009 None:intergenic 25.0%
!!! GTATACTGTTTTATTTTTGC+TGG - chr5_3:32242996-32243015 Msa0808270:intron 25.0%
! TGTAATAAATTGGGAAGTTA+AGG - chr5_3:32243141-32243160 Msa0808270:intron 25.0%
! GTAATAAATTGGGAAGTTAA+GGG - chr5_3:32243142-32243161 Msa0808270:intron 25.0%
! AAGTTAAGGGAAAAATATGT+TGG - chr5_3:32243155-32243174 Msa0808270:intron 25.0%
!! AAAATATGTTGGTCAGTTTT+TGG - chr5_3:32243166-32243185 Msa0808270:intron 25.0%
! TTTGGTAGAATAACATTTAG+TGG - chr5_3:32243674-32243693 Msa0808270:intron 25.0%
! TTGGTAGAATAACATTTAGT+GGG - chr5_3:32243675-32243694 Msa0808270:intron 25.0%
! TTCGTTGAGATACAAATAAA+CGG + chr5_3:32244148-32244167 None:intergenic 25.0%
!!! CTCATATTATGTGTCATTTA+AGG + chr5_3:32244304-32244323 None:intergenic 25.0%
! CCTATAAAGACATACAAATT+TGG + chr5_3:32244343-32244362 None:intergenic 25.0%
! CCAAATTTGTATGTCTTTAT+AGG - chr5_3:32244340-32244359 Msa0808270:intron 25.0%
! TTACAGTAAACAAACAATCA+AGG + chr5_3:32244502-32244521 None:intergenic 25.0%
! TGTTTAGTATTGTCTCATTA+TGG - chr5_3:32244674-32244693 Msa0808270:intron 25.0%
! AAGCATTAAGATCATGTTAA+TGG - chr5_3:32244757-32244776 Msa0808270:exon 25.0%
AATCGAATTTGTGAAAGCAA+AGG - chr5_3:32239656-32239675 Msa0808270:three_prime_UTR 30.0%
!! TGAACGATTTTGAAGGAATT+TGG + chr5_3:32239825-32239844 None:intergenic 30.0%
! AAGAAGTACACTATTCAACT+TGG - chr5_3:32239896-32239915 Msa0808270:three_prime_UTR 30.0%
! GGTACCCTTTTATGTATTTT+AGG - chr5_3:32239940-32239959 Msa0808270:three_prime_UTR 30.0%
!! TTTTACCAAGCTTGTTCTTA+AGG - chr5_3:32239983-32240002 Msa0808270:CDS 30.0%
! CAAAAACCAAACCATCATTT+TGG + chr5_3:32240292-32240311 None:intergenic 30.0%
! CTAAGTTTCACTGATTGTTA+TGG - chr5_3:32240312-32240331 Msa0808270:intron 30.0%
!! GCAAATGTTTACAAGTTGAT+TGG - chr5_3:32240394-32240413 Msa0808270:intron 30.0%
AAATCTTGCTTAACAAGTAC+AGG + chr5_3:32240421-32240440 None:intergenic 30.0%
! TGTACTTGTTAAGCAAGATT+TGG - chr5_3:32240420-32240439 Msa0808270:intron 30.0%
AACCACTTGGAATGTTTATT+AGG - chr5_3:32240679-32240698 Msa0808270:intron 30.0%
ACCACTTGGAATGTTTATTA+GGG - chr5_3:32240680-32240699 Msa0808270:intron 30.0%
TATAGGCTGCAAGAAAAAAA+TGG + chr5_3:32240938-32240957 None:intergenic 30.0%
TACGAAAGATGAAAACAGTA+AGG + chr5_3:32241407-32241426 None:intergenic 30.0%
! ACTGTTTTCATCTTTCGTAT+AGG - chr5_3:32241408-32241427 Msa0808270:intron 30.0%
! ATTAGCAAAAGGTGTATGTT+AGG - chr5_3:32241445-32241464 Msa0808270:intron 30.0%
! ATAACTTTGGCTAGTTAGTT+TGG - chr5_3:32241549-32241568 Msa0808270:intron 30.0%
TGTCTAATCACATGCATTTA+CGG + chr5_3:32241621-32241640 None:intergenic 30.0%
CATGTGATTAGACATATACT+GGG - chr5_3:32241627-32241646 Msa0808270:intron 30.0%
AATGAATATGGATGGAATAG+TGG - chr5_3:32241815-32241834 Msa0808270:intron 30.0%
TATGAAAACCTTCCACATAT+TGG - chr5_3:32241950-32241969 Msa0808270:intron 30.0%
ATGAAAACCTTCCACATATT+GGG - chr5_3:32241951-32241970 Msa0808270:intron 30.0%
TACAAAGAGAGTAAATTGGT+AGG + chr5_3:32242224-32242243 None:intergenic 30.0%
GTTACTACCTAAATTATCTC+AGG - chr5_3:32242322-32242341 Msa0808270:intron 30.0%
!! TTTATTGTGTTGGCTTTGAT+GGG - chr5_3:32242551-32242570 Msa0808270:intron 30.0%
CTTGAGAAGAGTTTATAAAG+AGG - chr5_3:32242604-32242623 Msa0808270:intron 30.0%
!! CATGAAAGTGTTGAAATTTG+GGG + chr5_3:32242675-32242694 None:intergenic 30.0%
TTACATTTAGAGACCAAAAC+AGG - chr5_3:32243047-32243066 Msa0808270:intron 30.0%
AATGCACAATAACTGTTCTA+AGG + chr5_3:32243084-32243103 None:intergenic 30.0%
!!! TCAGTTTTTGGTTAAGGAAT+TGG - chr5_3:32243178-32243197 Msa0808270:intron 30.0%
!!! TTTTTGGTTAAGGAATTGGA+AGG - chr5_3:32243182-32243201 Msa0808270:intron 30.0%
!! TTTTGGTTAAGGAATTGGAA+GGG - chr5_3:32243183-32243202 Msa0808270:intron 30.0%
CAATACAACATAAAGAGACA+AGG + chr5_3:32243261-32243280 None:intergenic 30.0%
TCTACCAAATATACCTTTAG+AGG + chr5_3:32243663-32243682 None:intergenic 30.0%
ATCAAGCAAAATAATGCACA+TGG + chr5_3:32243792-32243811 None:intergenic 30.0%
TCTTGTGTAAAAACAGAGTA+AGG + chr5_3:32243953-32243972 None:intergenic 30.0%
!!! TTACTCTGTTTTTACACAAG+AGG - chr5_3:32243952-32243971 Msa0808270:intron 30.0%
TTATGTGACTAAAAGGTCAA+GGG + chr5_3:32243996-32244015 None:intergenic 30.0%
AGAGTTGTTATGTGACTAAA+AGG + chr5_3:32244003-32244022 None:intergenic 30.0%
ACTTAATATAAGCCGAAAGA+GGG + chr5_3:32244043-32244062 None:intergenic 30.0%
AACTTAATATAAGCCGAAAG+AGG + chr5_3:32244044-32244063 None:intergenic 30.0%
TCGTTGAGATACAAATAAAC+GGG + chr5_3:32244147-32244166 None:intergenic 30.0%
TTCTACTTAACTACTCTACT+TGG - chr5_3:32244183-32244202 Msa0808270:intron 30.0%
!!! TAATGCTTTTAGTTTGTGTG+TGG + chr5_3:32244745-32244764 None:intergenic 30.0%
GCTTTCACAAATTCGATTTC+TGG + chr5_3:32239654-32239673 None:intergenic 35.0%
GAATTTGTGAAAGCAAAGGA+AGG - chr5_3:32239660-32239679 Msa0808270:three_prime_UTR 35.0%
GATCTCAACAAGCTTCAAAA+GGG - chr5_3:32239756-32239775 Msa0808270:three_prime_UTR 35.0%
!! TGTTCTTAAGGTACCCTTTT+AGG - chr5_3:32239995-32240014 Msa0808270:CDS 35.0%
!! GTTCTTAAGGTACCCTTTTA+GGG - chr5_3:32239932-32239951 Msa0808270:three_prime_UTR 35.0%
GATACAAACTAAGGATGCAT+TGG - chr5_3:32240209-32240228 Msa0808270:intron 35.0%
! TTTTGGTCCTAAATGTGTGA+TGG + chr5_3:32240275-32240294 None:intergenic 35.0%
! CACATTTAGGACCAAAATGA+TGG - chr5_3:32240278-32240297 Msa0808270:intron 35.0%
TTAGGACCAAAATGATGGTT+TGG - chr5_3:32240283-32240302 Msa0808270:intron 35.0%
ATGATTTGATTCATCTGGCA+CGG - chr5_3:32240613-32240632 Msa0808270:intron 35.0%
CCACTTGGAATGTTTATTAG+GGG - chr5_3:32240681-32240700 Msa0808270:intron 35.0%
TAGCTATACATTTGCATACG+TGG - chr5_3:32240759-32240778 Msa0808270:intron 35.0%
! TTGTACACAATGGAAGCATA+CGG + chr5_3:32241157-32241176 None:intergenic 35.0%
TGCTGTCCATTGTAAGTAAA+TGG - chr5_3:32241248-32241267 Msa0808270:intron 35.0%
CTTTCTATGCTTCACAATAG+CGG + chr5_3:32241298-32241317 None:intergenic 35.0%
TATGACTAGAGCCTATAACA+AGG - chr5_3:32241364-32241383 Msa0808270:intron 35.0%
AGGTGTATGTTAGGAGAAAT+AGG - chr5_3:32241454-32241473 Msa0808270:intron 35.0%
TATGTTAGGAGAAATAGGAG+AGG - chr5_3:32241459-32241478 Msa0808270:intron 35.0%
AGCAGCCGATTAAACTTTAT+CGG - chr5_3:32241482-32241501 Msa0808270:intron 35.0%
GCAGACCGATAAAGTTTAAT+CGG + chr5_3:32241490-32241509 None:intergenic 35.0%
GGTCTGCTAAATAAAGATAC+AGG - chr5_3:32241503-32241522 Msa0808270:intron 35.0%
CTTTCTTTCATTCCCTTACT+AGG + chr5_3:32241588-32241607 None:intergenic 35.0%
CTAGTAAGGGAATGAAAGAA+AGG - chr5_3:32241586-32241605 Msa0808270:intron 35.0%
GCATGTGATTAGACATATAC+TGG - chr5_3:32241626-32241645 Msa0808270:intron 35.0%
ATTGAACTGAAGGAAAGAAC+AGG + chr5_3:32241685-32241704 None:intergenic 35.0%
!! AGACTCAAGTATTGAACTGA+AGG + chr5_3:32241695-32241714 None:intergenic 35.0%
CATGGCGATACAATTGAAAA+TGG + chr5_3:32241725-32241744 None:intergenic 35.0%
TCATAAGAAGTAGGAATGAG+CGG + chr5_3:32241935-32241954 None:intergenic 35.0%
! GGAAGGTTTTCATAAGAAGT+AGG + chr5_3:32241944-32241963 None:intergenic 35.0%
CAACATAAACCACACTAACA+GGG + chr5_3:32241993-32242012 None:intergenic 35.0%
CTGTTAGTGTGGTTTATGTT+GGG - chr5_3:32241992-32242011 Msa0808270:intron 35.0%
AAGCAGAGGATTAAACTTTC+TGG - chr5_3:32242028-32242047 Msa0808270:intron 35.0%
AGCAGAGGATTAAACTTTCT+GGG - chr5_3:32242029-32242048 Msa0808270:intron 35.0%
AAAGGAAGAGAGTAAAGAGA+AGG - chr5_3:32242058-32242077 Msa0808270:intron 35.0%
AAGGAAGAGAGTAAAGAGAA+GGG - chr5_3:32242059-32242078 Msa0808270:intron 35.0%
GAGTTTATGTCTCTTGAAAC+TGG - chr5_3:32242127-32242146 Msa0808270:intron 35.0%
GGTCAGAAAAAAGAGAGAAA+AGG + chr5_3:32242196-32242215 None:intergenic 35.0%
AGAGAGTAAATTGGTAGGAA+CGG + chr5_3:32242219-32242238 None:intergenic 35.0%
AAGACGTCCTGAGATAATTT+AGG + chr5_3:32242332-32242351 None:intergenic 35.0%
TAAATTATCTCAGGACGTCT+TGG - chr5_3:32242331-32242350 Msa0808270:intron 35.0%
TCACAGAAACAAAGATCAAG+AGG + chr5_3:32242437-32242456 None:intergenic 35.0%
TGTAAATTCCGCCTTAATTG+CGG - chr5_3:32242467-32242486 Msa0808270:intron 35.0%
!! CAACACAATAAAGGTGTTAG+AGG + chr5_3:32242543-32242562 None:intergenic 35.0%
CTCTAACACCTTTATTGTGT+TGG - chr5_3:32242541-32242560 Msa0808270:intron 35.0%
CATCAAAGCCAACACAATAA+AGG + chr5_3:32242552-32242571 None:intergenic 35.0%
!! CTTTATTGTGTTGGCTTTGA+TGG - chr5_3:32242550-32242569 Msa0808270:intron 35.0%
!! TTATTGTGTTGGCTTTGATG+GGG - chr5_3:32242552-32242571 Msa0808270:intron 35.0%
ATTTAGTCCCAAGGATAGAT+AGG - chr5_3:32242578-32242597 Msa0808270:intron 35.0%
GAGAAGAGTTTATAAAGAGG+AGG - chr5_3:32242607-32242626 Msa0808270:intron 35.0%
GATTTGCACAAAGCACAAAT+AGG + chr5_3:32242837-32242856 None:intergenic 35.0%
CTAAAAAACGAGGGTTGTTT+AGG - chr5_3:32242882-32242901 Msa0808270:intron 35.0%
! CTTGTCAAATTCTTTTGACC+AGG - chr5_3:32242927-32242946 Msa0808270:intron 35.0%
AGGATAACAAGGATAGATGT+TGG + chr5_3:32242966-32242985 None:intergenic 35.0%
!!! TGTTGGTCAGTTTTTGGTTA+AGG - chr5_3:32243172-32243191 Msa0808270:intron 35.0%
! ACAGATTGCTGCATGTTTTA+TGG - chr5_3:32243373-32243392 Msa0808270:intron 35.0%
GCAGAATAGCAAGAAAGAAA+CGG - chr5_3:32243535-32243554 Msa0808270:intron 35.0%
! TAGGCCTCTAAAGGTATATT+TGG - chr5_3:32243656-32243675 Msa0808270:intron 35.0%
! AGAGCATAGAAGTGTAGAAA+AGG - chr5_3:32243854-32243873 Msa0808270:intron 35.0%
! GAGCATAGAAGTGTAGAAAA+GGG - chr5_3:32243855-32243874 Msa0808270:intron 35.0%
CATACAATACACCAAATGGT+GGG + chr5_3:32243927-32243946 None:intergenic 35.0%
GTTGCATACAATACACCAAA+TGG + chr5_3:32243931-32243950 None:intergenic 35.0%
GTTATGTGACTAAAAGGTCA+AGG + chr5_3:32243997-32244016 None:intergenic 35.0%
TTTGGCATCAAAAGTCACAT+TGG + chr5_3:32244570-32244589 None:intergenic 35.0%
! CTTTTGATGCCAAAGAAAGA+AGG - chr5_3:32244576-32244595 Msa0808270:intron 35.0%
TGCTCAAACAAACTTGTAGA+TGG - chr5_3:32244645-32244664 Msa0808270:intron 35.0%
TTTGTGAAAGCAAAGGAAGG+AGG - chr5_3:32239663-32239682 Msa0808270:three_prime_UTR 40.0%
GCGTTGAAGATCTCTAATGT+TGG + chr5_3:32239715-32239734 None:intergenic 40.0%
TAGAGATCTTCAACGCGAAT+TGG - chr5_3:32239719-32239738 Msa0808270:three_prime_UTR 40.0%
CGATCTCAACAAGCTTCAAA+AGG - chr5_3:32239755-32239774 Msa0808270:three_prime_UTR 40.0%
CGAAAATGAGCTCGTTCTTA+AGG - chr5_3:32239919-32239938 Msa0808270:three_prime_UTR 40.0%
GGTATGAACTGACCCTAAAA+GGG + chr5_3:32240011-32240030 None:intergenic 40.0%
ATTGAAGCCAGAACAAAGCT+CGG + chr5_3:32240032-32240051 None:intergenic 40.0%
!! AGCTTTGTTCTGGCTTCAAT+TGG - chr5_3:32240032-32240051 Msa0808270:intron 40.0%
!! GCTTTGTTCTGGCTTCAATT+GGG - chr5_3:32240033-32240052 Msa0808270:intron 40.0%
!! TCTCGGATTAGTTGGTCTTT+GGG - chr5_3:32240083-32240102 Msa0808270:intron 40.0%
AACAGTGCCATCACACATTT+AGG - chr5_3:32240265-32240284 Msa0808270:intron 40.0%
TGTTAAGCAAGATTTGGCTG+AGG - chr5_3:32240426-32240445 Msa0808270:intron 40.0%
TGATTTGATTCATCTGGCAC+GGG - chr5_3:32240614-32240633 Msa0808270:intron 40.0%
CCCCTAATAAACATTCCAAG+TGG + chr5_3:32240684-32240703 None:intergenic 40.0%
CAACACAAGTCAACATTTGG+TGG + chr5_3:32241096-32241115 None:intergenic 40.0%
CCTCAACACAAGTCAACATT+TGG + chr5_3:32241099-32241118 None:intergenic 40.0%
!! CCAAATGTTGACTTGTGTTG+AGG - chr5_3:32241096-32241115 Msa0808270:intron 40.0%
!! TTGACTTGTGTTGAGGAGTT+TGG - chr5_3:32241103-32241122 Msa0808270:intron 40.0%
CACTCAACATGGGTAAAACT+AGG + chr5_3:32241332-32241351 None:intergenic 40.0%
!!! CTAGTTTTACCCATGTTGAG+TGG - chr5_3:32241330-32241349 Msa0808270:intron 40.0%
! CTTTGGCTAGTTAGTTTGGA+AGG - chr5_3:32241553-32241572 Msa0808270:intron 40.0%
GTGATTAGACATATACTGGG+AGG - chr5_3:32241630-32241649 Msa0808270:intron 40.0%
ATTAGACATATACTGGGAGG+AGG - chr5_3:32241633-32241652 Msa0808270:intron 40.0%
! ATCAGAGTATCAGACTCTCA+TGG + chr5_3:32241743-32241762 None:intergenic 40.0%
TGGACAGTGAAGTAACACAA+TGG - chr5_3:32241849-32241868 Msa0808270:intron 40.0%
CAGTGAAGTAACACAATGGA+TGG - chr5_3:32241853-32241872 Msa0808270:intron 40.0%
TGGATGGAGAATAATCTCCT+TGG - chr5_3:32241869-32241888 Msa0808270:intron 40.0%
GGAATTGAAACCATATGGCA+GGG + chr5_3:32241914-32241933 None:intergenic 40.0%
TGAGCGGAATTGAAACCATA+TGG + chr5_3:32241919-32241938 None:intergenic 40.0%
CTTCCACATATTGGGCATAT+GGG - chr5_3:32241959-32241978 Msa0808270:intron 40.0%
CCAACATAAACCACACTAAC+AGG + chr5_3:32241994-32242013 None:intergenic 40.0%
CCTGTTAGTGTGGTTTATGT+TGG - chr5_3:32241991-32242010 Msa0808270:intron 40.0%
TGGTTTATGTTGGGAGAAGT+TGG - chr5_3:32242001-32242020 Msa0808270:intron 40.0%
AAACTTTCTGGGTCAGTCAA+AGG - chr5_3:32242040-32242059 Msa0808270:intron 40.0%
AGAAGGGTTAGAGAACTGTA+AGG - chr5_3:32242075-32242094 Msa0808270:intron 40.0%
GAAGGGTTAGAGAACTGTAA+GGG - chr5_3:32242076-32242095 Msa0808270:intron 40.0%
AGAGTAAATTGGTAGGAACG+GGG + chr5_3:32242217-32242236 None:intergenic 40.0%
GAGAGTAAATTGGTAGGAAC+GGG + chr5_3:32242218-32242237 None:intergenic 40.0%
AAACTTCCAAGTCAGCAGAT+TGG + chr5_3:32242403-32242422 None:intergenic 40.0%
!! AACAAAGATCAAGAGGTGTC+AGG + chr5_3:32242430-32242449 None:intergenic 40.0%
! AAACCCAAAGGTCGCAATTT+TGG + chr5_3:32242507-32242526 None:intergenic 40.0%
TGTAATGAAGGCAAACCCAA+AGG + chr5_3:32242519-32242538 None:intergenic 40.0%
CAAGAGTCCTATCTATCCTT+GGG + chr5_3:32242588-32242607 None:intergenic 40.0%
TCAAGAGTCCTATCTATCCT+TGG + chr5_3:32242589-32242608 None:intergenic 40.0%
CTAACTCATCCTTGCAAAAC+CGG + chr5_3:32242651-32242670 None:intergenic 40.0%
!!! CTCGTTTTTTAGTCAGGCTT+GGG + chr5_3:32242874-32242893 None:intergenic 40.0%
CAAGCCTGACTAAAAAACGA+GGG - chr5_3:32242873-32242892 Msa0808270:intron 40.0%
!!! ACAACCCTCGTTTTTTAGTC+AGG + chr5_3:32242880-32242899 None:intergenic 40.0%
! AGGATAGATGTTGGTTAGCA+TGG + chr5_3:32242957-32242976 None:intergenic 40.0%
AACAGTATACAATGAGGGGA+AGG + chr5_3:32242986-32243005 None:intergenic 40.0%
GATTCCAAGCTCTCAATACT+TGG - chr5_3:32243211-32243230 Msa0808270:intron 40.0%
CAAGCTCTCAATACTTGGAA+GGG - chr5_3:32243216-32243235 Msa0808270:intron 40.0%
AAGCTCTCAATACTTGGAAG+GGG - chr5_3:32243217-32243236 Msa0808270:intron 40.0%
TTATACGGTCTTTGTGTGTC+AGG - chr5_3:32243474-32243493 Msa0808270:intron 40.0%
!! AGATCCTAGCTCTACTAGAT+AGG - chr5_3:32243637-32243656 Msa0808270:intron 40.0%
TCTACTAGATAGGCCTCTAA+AGG - chr5_3:32243647-32243666 Msa0808270:intron 40.0%
CATTAAGACTACCCTAGACA+AGG + chr5_3:32243708-32243727 None:intergenic 40.0%
GCATACAATACACCAAATGG+TGG + chr5_3:32243928-32243947 None:intergenic 40.0%
!! TTACACAAGAGGCTGTTTCT+TGG - chr5_3:32243963-32243982 Msa0808270:intron 40.0%
ACAAAAGATGCAATCTCTGC+AGG - chr5_3:32244450-32244469 Msa0808270:intron 40.0%
ACTGTAACTTGACCGTTCAT+AGG - chr5_3:32244515-32244534 Msa0808270:intron 40.0%
ACTCATTCACCACCTATGAA+CGG + chr5_3:32244530-32244549 None:intergenic 40.0%
TTGATGCCAAAGAAAGAAGG+TGG - chr5_3:32244579-32244598 Msa0808270:intron 40.0%
ACCTTTCCACCTTCTTTCTT+TGG + chr5_3:32244588-32244607 None:intergenic 40.0%
!! TTCGATTTCTGGCACACTGA+GGG + chr5_3:32239643-32239662 None:intergenic 45.0%
!! ATTCGATTTCTGGCACACTG+AGG + chr5_3:32239644-32239663 None:intergenic 45.0%
GGGTACCTTAAGAACAAGCT+TGG + chr5_3:32239991-32240010 None:intergenic 45.0%
CGGTATGAACTGACCCTAAA+AGG + chr5_3:32240012-32240031 None:intergenic 45.0%
!! GTTCATACCGAGCTTTGTTC+TGG - chr5_3:32240022-32240041 Msa0808270:intron 45.0%
CTTCAATTGGGTTCTGCTAG+TGG - chr5_3:32240045-32240064 Msa0808270:intron 45.0%
!! GATTGGTCTCTCGGATTAGT+TGG - chr5_3:32240075-32240094 Msa0808270:intron 45.0%
!! CTCTCGGATTAGTTGGTCTT+TGG - chr5_3:32240082-32240101 Msa0808270:intron 45.0%
TCTCTTGCGGACATTTGCAT+TGG + chr5_3:32240452-32240471 None:intergenic 45.0%
GAGGAGTTTGGATAGTGTGT+AGG - chr5_3:32241115-32241134 Msa0808270:intron 45.0%
GAGTTTGGATAGTGTGTAGG+AGG - chr5_3:32241118-32241137 Msa0808270:intron 45.0%
! GGGCTGCCATTTACTTACAA+TGG + chr5_3:32241257-32241276 None:intergenic 45.0%
ACCCATGTTGAGTGGTTGTT+TGG - chr5_3:32241338-32241357 Msa0808270:intron 45.0%
GCCAAACAACCACTCAACAT+GGG + chr5_3:32241342-32241361 None:intergenic 45.0%
AGCCAAACAACCACTCAACA+TGG + chr5_3:32241343-32241362 None:intergenic 45.0%
GACTAGAGCCTATAACAAGG+AGG - chr5_3:32241367-32241386 Msa0808270:intron 45.0%
! CCTTAAGGCCTCCTTGTTAT+AGG + chr5_3:32241378-32241397 None:intergenic 45.0%
CCTATAACAAGGAGGCCTTA+AGG - chr5_3:32241375-32241394 Msa0808270:intron 45.0%
ACAGTAAGGTTGCTGCCTTA+AGG + chr5_3:32241393-32241412 None:intergenic 45.0%
! TGGCTAGTTAGTTTGGAAGG+AGG - chr5_3:32241556-32241575 Msa0808270:intron 45.0%
!! AAGGAGGAGAGTACCTAGTA+AGG - chr5_3:32241572-32241591 Msa0808270:intron 45.0%
!! AGGAGGAGAGTACCTAGTAA+GGG - chr5_3:32241573-32241592 Msa0808270:intron 45.0%
ATATGGCAGGGAGTTTGAGA+GGG + chr5_3:32241902-32241921 None:intergenic 45.0%
CGGAATTGAAACCATATGGC+AGG + chr5_3:32241915-32241934 None:intergenic 45.0%
CCATATGCCCAATATGTGGA+AGG + chr5_3:32241961-32241980 None:intergenic 45.0%
CCTTCCACATATTGGGCATA+TGG - chr5_3:32241958-32241977 Msa0808270:intron 45.0%
AGTCAGCAGATTGGAAAGCA+GGG + chr5_3:32242394-32242413 None:intergenic 45.0%
AAGTCAGCAGATTGGAAAGC+AGG + chr5_3:32242395-32242414 None:intergenic 45.0%
! TGCTTTCCAATCTGCTGACT+TGG - chr5_3:32242394-32242413 Msa0808270:intron 45.0%
TCGCCAAAATTGCGACCTTT+GGG - chr5_3:32242501-32242520 Msa0808270:intron 45.0%
GGTGTTAGAGGCTGTAATGA+AGG + chr5_3:32242531-32242550 None:intergenic 45.0%
! CGGTTTTGCAAGGATGAGTT+AGG - chr5_3:32242649-32242668 Msa0808270:intron 45.0%
!!! CCTCGTTTTTTAGTCAGGCT+TGG + chr5_3:32242875-32242894 None:intergenic 45.0%
CCAAGCCTGACTAAAAAACG+AGG - chr5_3:32242872-32242891 Msa0808270:intron 45.0%
CAATGAGGGGAAGGATAACA+AGG + chr5_3:32242977-32242996 None:intergenic 45.0%
!! ACTGTTCTAAGGACCAGTTC+AGG + chr5_3:32243073-32243092 None:intergenic 45.0%
!! CCTTCCAAGTATTGAGAGCT+TGG + chr5_3:32243218-32243237 None:intergenic 45.0%
CCAAGCTCTCAATACTTGGA+AGG - chr5_3:32243215-32243234 Msa0808270:intron 45.0%
TGATGCCACGGTTCAAGATT+TGG - chr5_3:32243505-32243524 Msa0808270:intron 45.0%
CTCTTCCAAATCTTGAACCG+TGG + chr5_3:32243513-32243532 None:intergenic 45.0%
CCATCCCTGATCCCTTTATT+GGG - chr5_3:32243728-32243747 Msa0808270:intron 45.0%
TCACACACCAGCCCAATAAA+GGG + chr5_3:32243742-32243761 None:intergenic 45.0%
ATCACACACCAGCCCAATAA+AGG + chr5_3:32243743-32243762 None:intergenic 45.0%
! ACAATACACCAAATGGTGGG+AGG + chr5_3:32243924-32243943 None:intergenic 45.0%
GTAACTTGACCGTTCATAGG+TGG - chr5_3:32244518-32244537 Msa0808270:intron 45.0%
GCCAAAGAAAGAAGGTGGAA+AGG - chr5_3:32244584-32244603 Msa0808270:intron 45.0%
TGTGAGAGTGGTTTCTGTCT+TGG + chr5_3:32244616-32244635 None:intergenic 45.0%
GCAAAACTAGCATGTGAGAG+TGG + chr5_3:32244628-32244647 None:intergenic 45.0%
!! ATTATTATTATTATCTTATA+CGG - chr5_3:32243459-32243478 Msa0808270:intron 5.0%
GTGAAAGCAAAGGAAGGAGG+AGG - chr5_3:32239666-32239685 Msa0808270:three_prime_UTR 50.0%
! CTGCTAGTGGACAGTTGGAT+TGG - chr5_3:32240058-32240077 Msa0808270:intron 50.0%
!! GGACAGTTGGATTGGTCTCT+CGG - chr5_3:32240066-32240085 Msa0808270:intron 50.0%
!! GGATTAGTTGGTCTTTGGGC+TGG - chr5_3:32240087-32240106 Msa0808270:intron 50.0%
TATGGCAGGGAGTTTGAGAG+GGG + chr5_3:32241901-32241920 None:intergenic 50.0%
CATATGGCAGGGAGTTTGAG+AGG + chr5_3:32241903-32241922 None:intergenic 50.0%
CTCTCAAACTCCCTGCCATA+TGG - chr5_3:32241901-32241920 Msa0808270:intron 50.0%
CAGCCCATATGCCCAATATG+TGG + chr5_3:32241965-32241984 None:intergenic 50.0%
GCTGCTTATCCCTGTTAGTG+TGG - chr5_3:32241981-32242000 Msa0808270:intron 50.0%
GAGAAGTTGGACAGAAGCAG+AGG - chr5_3:32242014-32242033 Msa0808270:intron 50.0%
! GCAGAATCACTGGCTGGAAA+TGG + chr5_3:32242367-32242386 None:intergenic 50.0%
! GGTTTTGCAGAATCACTGGC+TGG + chr5_3:32242373-32242392 None:intergenic 50.0%
! GCAGGGTTTTGCAGAATCAC+TGG + chr5_3:32242377-32242396 None:intergenic 50.0%
!! GTCGCAATTTTGGCGACTAG+GGG + chr5_3:32242497-32242516 None:intergenic 50.0%
!! GGTCGCAATTTTGGCGACTA+GGG + chr5_3:32242498-32242517 None:intergenic 50.0%
!! AGGTCGCAATTTTGGCGACT+AGG + chr5_3:32242499-32242518 None:intergenic 50.0%
GTCGCCAAAATTGCGACCTT+TGG - chr5_3:32242500-32242519 Msa0808270:intron 50.0%
!! TTGTGTTGGCTTTGATGGGG+TGG - chr5_3:32242555-32242574 Msa0808270:intron 50.0%
! ATGGGGTGGATTTAGTCCCA+AGG - chr5_3:32242569-32242588 Msa0808270:intron 50.0%
!! CAAAACCGGCTTGTAAGGTG+AGG + chr5_3:32242637-32242656 None:intergenic 50.0%
!! CCTTGCAAAACCGGCTTGTA+AGG + chr5_3:32242642-32242661 None:intergenic 50.0%
!! CCTTACAAGCCGGTTTTGCA+AGG - chr5_3:32242639-32242658 Msa0808270:intron 50.0%
AGACCAAAACAGGCCTGAAC+TGG - chr5_3:32243057-32243076 Msa0808270:intron 50.0%
GAGGCCTATCTAGTAGAGCT+AGG + chr5_3:32243644-32243663 None:intergenic 50.0%
GCCATCCCTGATCCCTTTAT+TGG - chr5_3:32243727-32243746 Msa0808270:intron 50.0%
CCCAATAAAGGGATCAGGGA+TGG + chr5_3:32243731-32243750 None:intergenic 50.0%
CCAGCCCAATAAAGGGATCA+GGG + chr5_3:32243735-32243754 None:intergenic 50.0%
ACCAGCCCAATAAAGGGATC+AGG + chr5_3:32243736-32243755 None:intergenic 50.0%
! GTGCAGGAGCTTTGTAGACA+GGG + chr5_3:32243884-32243903 None:intergenic 50.0%
! TGTGCAGGAGCTTTGTAGAC+AGG + chr5_3:32243885-32243904 None:intergenic 50.0%
TGCACCAAAGCTCCCTCTTT+CGG - chr5_3:32244028-32244047 Msa0808270:CDS 50.0%
TAAGCCGAAAGAGGGAGCTT+TGG + chr5_3:32244035-32244054 None:intergenic 50.0%
AAGATGCAATCTCTGCAGGC+TGG - chr5_3:32244454-32244473 Msa0808270:intron 50.0%
AGATGCAATCTCTGCAGGCT+GGG - chr5_3:32244455-32244474 Msa0808270:intron 50.0%
AATCTCTGCAGGCTGGGAAA+GGG - chr5_3:32244461-32244480 Msa0808270:intron 50.0%
! GGGTTCTGCTAGTGGACAGT+TGG - chr5_3:32240053-32240072 Msa0808270:intron 55.0%
TTTGAGAGGGGAGCGAACCA+AGG + chr5_3:32241889-32241908 None:intergenic 55.0%
!! GCAATTTTGGCGACTAGGGG+CGG + chr5_3:32242494-32242513 None:intergenic 55.0%
GCACTCCTCACCTTACAAGC+CGG - chr5_3:32242629-32242648 Msa0808270:intron 55.0%
GTTGGTTAGCATGGTGTGCC+TGG + chr5_3:32242948-32242967 None:intergenic 55.0%
! GGACCAGTTCAGGCCTGTTT+TGG + chr5_3:32243063-32243082 None:intergenic 55.0%
!! CAGGAAGCGTCTTGATGCCA+CGG - chr5_3:32243493-32243512 Msa0808270:intron 55.0%
TGGGTCCTGTGCCTTGTCTA+GGG - chr5_3:32243694-32243713 Msa0808270:intron 55.0%
GACTACCCTAGACAAGGCAC+AGG + chr5_3:32243702-32243721 None:intergenic 55.0%
CCCTGATCCCTTTATTGGGC+TGG - chr5_3:32243732-32243751 Msa0808270:intron 55.0%
CAATCTCTGCAGGCTGGGAA+AGG - chr5_3:32244460-32244479 Msa0808270:intron 55.0%
CTAGGGGCGGACCGCAATTA+AGG + chr5_3:32242481-32242500 None:intergenic 60.0%
GTGGGTCCTGTGCCTTGTCT+AGG - chr5_3:32243693-32243712 Msa0808270:intron 60.0%
GCTCCTGCACACGCAATGTC+CGG - chr5_3:32243894-32243913 Msa0808270:intron 60.0%
CTCCTGCACACGCAATGTCC+GGG - chr5_3:32243895-32243914 Msa0808270:intron 60.0%
! CCAAATGGTGGGAGGTCTCC+CGG + chr5_3:32243916-32243935 None:intergenic 60.0%
TCTGCAGGCTGGGAAAGGGA+AGG - chr5_3:32244465-32244484 Msa0808270:intron 60.0%
GGGGCGGACCGCAATTAAGG+CGG + chr5_3:32242478-32242497 None:intergenic 65.0%
CTCCCGGACATTGCGTGTGC+AGG + chr5_3:32243900-32243919 None:intergenic 65.0%
CCGGGAGACCTCCCACCATT+TGG - chr5_3:32243913-32243932 Msa0808270:intron 65.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 32239630 32244830 32239630 ID=Msa0808270;Name=Msa0808270
chr5_3 mRNA 32239630 32244830 32239630 ID=Msa0808270-mRNA-1;Parent=Msa0808270;Name=Msa0808270-mRNA-1;_AED=0.05;_eAED=0.05;_QI=72|1|1|1|0.75|1|5|338|129
chr5_3 exon 32239630 32240024 32239630 ID=Msa0808270-mRNA-1:exon:10590;Parent=Msa0808270-mRNA-1
chr5_3 exon 32240904 32240964 32240904 ID=Msa0808270-mRNA-1:exon:10589;Parent=Msa0808270-mRNA-1
chr5_3 exon 32243966 32244090 32243966 ID=Msa0808270-mRNA-1:exon:10588;Parent=Msa0808270-mRNA-1
chr5_3 exon 32244520 32244590 32244520 ID=Msa0808270-mRNA-1:exon:10587;Parent=Msa0808270-mRNA-1
chr5_3 exon 32244683 32244830 32244683 ID=Msa0808270-mRNA-1:exon:10586;Parent=Msa0808270-mRNA-1
chr5_3 five_prime_UTR 32244759 32244830 32244759 ID=Msa0808270-mRNA-1:five_prime_utr;Parent=Msa0808270-mRNA-1
chr5_3 CDS 32244683 32244758 32244683 ID=Msa0808270-mRNA-1:cds;Parent=Msa0808270-mRNA-1
chr5_3 CDS 32244520 32244590 32244520 ID=Msa0808270-mRNA-1:cds;Parent=Msa0808270-mRNA-1
chr5_3 CDS 32243966 32244090 32243966 ID=Msa0808270-mRNA-1:cds;Parent=Msa0808270-mRNA-1
chr5_3 CDS 32240904 32240964 32240904 ID=Msa0808270-mRNA-1:cds;Parent=Msa0808270-mRNA-1
chr5_3 CDS 32239968 32240024 32239968 ID=Msa0808270-mRNA-1:cds;Parent=Msa0808270-mRNA-1
chr5_3 three_prime_UTR 32239630 32239967 32239630 ID=Msa0808270-mRNA-1:three_prime_utr;Parent=Msa0808270-mRNA-1
Gene Sequence

>Msa0808270

ATGAGTTCATCCAACATTAGAGATCTTCAACGCGAATTGGAGAACAAAGCTAACGATCTCAACAAGCTTCAAAAGGATATTGCGAAGAATCATCAAGTGAGAAAGAAGTACACTATTCAACTTGGCGAAAATGAGCTCGTTCTTAAGGAGTTGGATTTATTGAACGAAGACGCAAATGTTTACAAGTTGATTGGACCTGTACTTGTTAAGCAAGATTTGGCTGAGGCCAATGCAAATGTCCGCAAGAGAATTGAATACATTTCAGCTGAACTGAAGCGTCTTGATGCCACGGTTCAAGATTTGGAAGAGAAGCAGAATAGCAAGAAAGAAACGATAATGAAATTGCAACAAAAGATGCAATCTCTGCAGGCTGGGAAAGGGAAGGCGTAG

Protein sequence

>Msa0808270

MSSSNIRDLQRELENKANDLNKLQKDIAKNHQVRKKYTIQLGENELVLKELDLLNEDANVYKLIGPVLVKQDLAEANANVRKRIEYISAELKRLDATVQDLEEKQNSKKETIMKLQQKMQSLQAGKGKA*