AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1187840


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1187840 MtrunA17_Chr8g0354981 98.333 60 1 0 1 60 1 60 2.43e-38 120
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1187840 AT3G15395.5 65.000 60 20 1 1 60 1 59 3.70e-24 85.5
Msa1187840 AT3G15395.2 65.000 60 20 1 1 60 1 59 3.70e-24 85.5
Msa1187840 AT3G15395.3 65.000 60 20 1 1 60 1 59 3.70e-24 85.5
Msa1187840 AT3G15395.4 65.000 60 20 1 1 60 1 59 3.70e-24 85.5
Msa1187840 AT3G15395.1 65.000 60 20 1 1 60 1 59 3.70e-24 85.5

Find 43 sgRNAs with CRISPR-Local

Find 214 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAAGGTTTCTTATACTTAA+AGG 0.167475 8_1:+27812588 Msa1187840:three_prime_UTR
CATTTGTTTATGCCATTAAA+AGG 0.248933 8_1:+27812571 Msa1187840:three_prime_UTR
GCAATTTATCAAAATTAAAT+TGG 0.263970 8_1:-27812648 None:intergenic
GTTCTTTGGGCTTGTGCTAT+TGG 0.281471 8_1:+27812019 Msa1187840:CDS
AGTGGTCTATGAGAGTTCTT+TGG 0.313525 8_1:+27812005 Msa1187840:CDS
TTAATCATAAATATATTTAG+AGG 0.345402 8_1:-27812722 None:intergenic
TGGGGTATAAGCCGGAAAAC+AGG 0.346498 8_1:+27809455 None:intergenic
AGGCTTGAAAGGAATGGATT+TGG 0.349048 8_1:+27812443 Msa1187840:CDS
ATCCATTCCTTTCAAGCCTT+CGG 0.357129 8_1:-27812439 None:intergenic
TCATTTCAGATTAAAGTTGC+TGG 0.384437 8_1:+27811939 Msa1187840:intron
GATTCAACAGATACAGATTT+CGG 0.391308 8_1:-27809545 None:intergenic
TAGAAAGACAAAAGCAGAAT+AGG 0.394330 8_1:+27812403 Msa1187840:CDS
GTTCGCAAGGATTTATGTTA+CGG 0.399348 8_1:-27809500 None:intergenic
GTGGTCTATGAGAGTTCTTT+GGG 0.402171 8_1:+27812006 Msa1187840:CDS
ATGTAGGGAGGGAGGGAGTA+AGG 0.410223 8_1:-27812784 None:intergenic
TACCTGTCTAGGTCTGTATA+TGG 0.414586 8_1:+27812374 Msa1187840:intron
TTCGCAAGGATTTATGTTAC+GGG 0.415915 8_1:-27809499 None:intergenic
TTTAGAGGCACAACTATCAA+TGG 0.472837 8_1:-27812707 None:intergenic
GTTCCCATGGCATGCAGTAA+AGG 0.478755 8_1:-27811962 None:intergenic
CTGGCCTTTACTGCATGCCA+TGG 0.491901 8_1:+27811958 Msa1187840:exon
CTTGTCCGTAATTACTCCTC+TGG 0.492027 8_1:-27811984 None:intergenic
GGGAACCAGAGGAGTAATTA+CGG 0.516023 8_1:+27811979 Msa1187840:CDS
CTTGAAAGGAATGGATTTGG+AGG 0.518401 8_1:+27812446 Msa1187840:CDS
GGGGTATAAGCCGGAAAACA+GGG 0.520710 8_1:+27809456 None:intergenic
TGTAGGGAGGGAGGGAGTAA+GGG 0.524010 8_1:-27812783 None:intergenic
AGCAAAGTTGTGGTATTGAA+AGG 0.534487 8_1:+27809572 Msa1187840:five_prime_UTR
AAAGGAATGGATTTGGAGGA+AGG 0.535893 8_1:+27812450 Msa1187840:CDS
GGCCGAAGGCTTGAAAGGAA+TGG 0.548731 8_1:+27812437 Msa1187840:CDS
TGGCCTTTACTGCATGCCAT+GGG 0.552122 8_1:+27811959 Msa1187840:exon
TTGTGTAACAAAATTTACAT+TGG 0.560221 8_1:-27812670 None:intergenic
ATGTTGGCCGAAGGCTTGAA+AGG 0.560678 8_1:+27812432 Msa1187840:CDS
GCAGAATAGGCAGAGGATGT+TGG 0.565240 8_1:+27812416 Msa1187840:CDS
ATGGATTTGGAGGAAGGCAA+TGG 0.569370 8_1:+27812456 Msa1187840:CDS
AATTACTCCTCTGGTTCCCA+TGG 0.583145 8_1:-27811975 None:intergenic
GACAAAAGCAGAATAGGCAG+AGG 0.586343 8_1:+27812409 Msa1187840:CDS
AGATTTCGGTACACAACGCA+AGG 0.596019 8_1:-27809531 None:intergenic
CTGCATGCCATGGGAACCAG+AGG 0.620238 8_1:+27811968 Msa1187840:exon
TGAATCAGTAAGCAAAGTTG+TGG 0.626581 8_1:+27809562 Msa1187840:five_prime_UTR
GTTGTGGTATTGAAAGGACA+AGG 0.629577 8_1:+27809578 Msa1187840:five_prime_UTR
GGGTATAAGCCGGAAAACAG+GGG 0.631877 8_1:+27809457 None:intergenic
GAGGAGTAATTACGGACAAG+TGG 0.636089 8_1:+27811987 Msa1187840:CDS
AGGCAGAGGATGTTGGCCGA+AGG 0.646645 8_1:+27812423 Msa1187840:CDS
ATTGAAAGGACAAGGTTCCG+AGG 0.668650 8_1:+27809586 Msa1187840:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACATTAATTTTTTTTTTTTG+AGG + chr8_1:27809774-27809793 Msa1187840:intron 10.0%
!!! CATTAATTTTTTTTTTTTGA+GGG + chr8_1:27809775-27809794 Msa1187840:intron 10.0%
!!! CTTTTTTTTTTTTTTTGAAA+TGG - chr8_1:27810837-27810856 None:intergenic 10.0%
!! TTAATCATAAATATATTTAG+AGG - chr8_1:27812725-27812744 None:intergenic 10.0%
!!! CATTGTTAATTAAATGATTT+TGG + chr8_1:27809725-27809744 Msa1187840:intron 15.0%
!!! TCGTTGATTTAAATTATTAT+TGG + chr8_1:27809954-27809973 Msa1187840:intron 15.0%
!! AAAAAAAAGAATATTCTCAA+AGG - chr8_1:27811754-27811773 None:intergenic 15.0%
!! GCAATTTATCAAAATTAAAT+TGG - chr8_1:27812651-27812670 None:intergenic 15.0%
!! TTAATTAACAATGCTTACTT+AGG - chr8_1:27809718-27809737 None:intergenic 20.0%
!! ATTTGTAATTAGTAAAGATG+AGG + chr8_1:27809837-27809856 Msa1187840:intron 20.0%
!! TGAAAAATGGAAAAGTAAAT+GGG - chr8_1:27810595-27810614 None:intergenic 20.0%
!!! ATTTACTTTTCCATTTTTCA+CGG + chr8_1:27810595-27810614 Msa1187840:intron 20.0%
!!! ATACATTTCCCTTATTTATA+GGG - chr8_1:27810899-27810918 None:intergenic 20.0%
!! AAATGTAGCTTCTTAAAAAT+AGG + chr8_1:27811087-27811106 Msa1187840:intron 20.0%
!! AATGTAGCTTCTTAAAAATA+GGG + chr8_1:27811088-27811107 Msa1187840:intron 20.0%
!!! ATTCTTTATTTTACAGCAAT+AGG - chr8_1:27811777-27811796 None:intergenic 20.0%
!! ATTCTTTCTTACTCAAATAA+AGG + chr8_1:27811875-27811894 Msa1187840:intron 20.0%
!!! TACATTTAAGTTTGTTAACA+AGG - chr8_1:27812101-27812120 None:intergenic 20.0%
!!! AAGTATAAGAAACCTTTTAA+TGG - chr8_1:27812586-27812605 None:intergenic 20.0%
!! AAAAGGTTTCTTATACTTAA+AGG + chr8_1:27812588-27812607 Msa1187840:three_prime_UTR 20.0%
!! TTGTGTAACAAAATTTACAT+TGG - chr8_1:27812673-27812692 None:intergenic 20.0%
!!! TTGAGTAGTTTGTACAATTT+TGG + chr8_1:27810087-27810106 Msa1187840:intron 25.0%
! TAGAATAAAACATATACCGA+TGG + chr8_1:27810132-27810151 Msa1187840:intron 25.0%
! TAAATAAGACAGAGGAAAAA+TGG - chr8_1:27810557-27810576 None:intergenic 25.0%
! GTGAAAAATGGAAAAGTAAA+TGG - chr8_1:27810596-27810615 None:intergenic 25.0%
! AAGAATATATATGGGTGAAT+GGG - chr8_1:27810663-27810682 None:intergenic 25.0%
! ATTCACCCATATATATTCTT+GGG + chr8_1:27810663-27810682 Msa1187840:intron 25.0%
!!! GGTGTTATCTTTTTGTTTTT+GGG + chr8_1:27810685-27810704 Msa1187840:intron 25.0%
! TTAACAAGACCCTATAAATA+AGG + chr8_1:27810887-27810906 Msa1187840:intron 25.0%
! TAACAAGACCCTATAAATAA+GGG + chr8_1:27810888-27810907 Msa1187840:intron 25.0%
!! GATACATTTCCCTTATTTAT+AGG - chr8_1:27810900-27810919 None:intergenic 25.0%
!!! TTATGTCACTATTGTTTCTA+TGG + chr8_1:27811035-27811054 Msa1187840:intron 25.0%
! CTATGTAACAGTTTATAGTA+GGG + chr8_1:27811166-27811185 Msa1187840:intron 25.0%
! ATCTATTTAGTGTCAACTAT+TGG + chr8_1:27811279-27811298 Msa1187840:intron 25.0%
! ACAAGAAAAATGAAAGATTC+AGG + chr8_1:27811379-27811398 Msa1187840:intron 25.0%
! CAAGAAAAATGAAAGATTCA+GGG + chr8_1:27811380-27811399 Msa1187840:intron 25.0%
! AGTATTCAGAGACTATATTT+AGG - chr8_1:27811422-27811441 None:intergenic 25.0%
!!! AATTGTTTGATTTGAACTGA+TGG + chr8_1:27811472-27811491 Msa1187840:intron 25.0%
! CTCAATAGTTCAACAAATTA+TGG + chr8_1:27811503-27811522 Msa1187840:intron 25.0%
! ATAGTTCAACAAATTATGGT+TGG + chr8_1:27811507-27811526 Msa1187840:intron 25.0%
! AGGATATAGAATTTGAATGA+AGG + chr8_1:27811554-27811573 Msa1187840:intron 25.0%
!! GTTAAGTTCTGTAGATATTT+TGG + chr8_1:27811622-27811641 Msa1187840:intron 25.0%
!!! TTTTTTAAATAGCCCTCAAT+TGG + chr8_1:27811658-27811677 Msa1187840:intron 25.0%
! GTTTATATACAACAAGTGTT+AGG - chr8_1:27811903-27811922 None:intergenic 25.0%
!! CAACTTTAATCTGAAATGAA+CGG - chr8_1:27811938-27811957 None:intergenic 25.0%
! AAGAAGGTTCCATTAATAAA+GGG - chr8_1:27812070-27812089 None:intergenic 25.0%
! AAAGAAGGTTCCATTAATAA+AGG - chr8_1:27812071-27812090 None:intergenic 25.0%
!! TGTTTTACGATACGTTATTT+AGG + chr8_1:27812258-27812277 Msa1187840:intron 25.0%
!! GTTTTACGATACGTTATTTA+GGG + chr8_1:27812259-27812278 Msa1187840:intron 25.0%
!! GGTAAACTATTTTCAAATAG+CGG + chr8_1:27812280-27812299 Msa1187840:intron 25.0%
! CATTTGTTTATGCCATTAAA+AGG + chr8_1:27812571-27812590 Msa1187840:three_prime_UTR 25.0%
GATTCAACAGATACAGATTT+CGG - chr8_1:27809548-27809567 None:intergenic 30.0%
!! ATAGAAAAGAAAGAGTACCT+CGG - chr8_1:27809606-27809625 None:intergenic 30.0%
ATAAATATCAGAACAAGAGC+AGG - chr8_1:27809654-27809673 None:intergenic 30.0%
AAAATTCAGCAAGCTACTAA+AGG + chr8_1:27810482-27810501 Msa1187840:intron 30.0%
!! AAGTTGATAACCGTGAAAAA+TGG - chr8_1:27810608-27810627 None:intergenic 30.0%
CAAGAATATATATGGGTGAA+TGG - chr8_1:27810664-27810683 None:intergenic 30.0%
CATTCACCCATATATATTCT+TGG + chr8_1:27810662-27810681 Msa1187840:intron 30.0%
TTCACCCATATATATTCTTG+GGG + chr8_1:27810664-27810683 Msa1187840:intron 30.0%
AACACCCCAAGAATATATAT+GGG - chr8_1:27810671-27810690 None:intergenic 30.0%
TAACACCCCAAGAATATATA+TGG - chr8_1:27810672-27810691 None:intergenic 30.0%
!!! GGGTGTTATCTTTTTGTTTT+TGG + chr8_1:27810684-27810703 Msa1187840:intron 30.0%
!!! GTTATCTTTTTGTTTTTGGG+TGG + chr8_1:27810688-27810707 Msa1187840:intron 30.0%
!!! TGTTTTTGGGTGGTTTTTAA+AGG + chr8_1:27810698-27810717 Msa1187840:intron 30.0%
!!! GTTTTTGGGTGGTTTTTAAA+GGG + chr8_1:27810699-27810718 Msa1187840:intron 30.0%
!!! TTTTTGGGTGGTTTTTAAAG+GGG + chr8_1:27810700-27810719 Msa1187840:intron 30.0%
AAATACAAAGAAGGGGAAAT+CGG - chr8_1:27810756-27810775 None:intergenic 30.0%
TGGGAAAAAATACAAAGAAG+GGG - chr8_1:27810763-27810782 None:intergenic 30.0%
GTGGGAAAAAATACAAAGAA+GGG - chr8_1:27810764-27810783 None:intergenic 30.0%
GCAAAAGATAAACCAAACAT+AGG + chr8_1:27811143-27811162 Msa1187840:intron 30.0%
GCTATGTAACAGTTTATAGT+AGG + chr8_1:27811165-27811184 Msa1187840:intron 30.0%
AAAAATGAAAGATTCAGGGA+TGG + chr8_1:27811384-27811403 Msa1187840:intron 30.0%
TATAGTCTCTGAATACTTAC+TGG + chr8_1:27811425-27811444 Msa1187840:intron 30.0%
! AAATTATGGTTGGTTCTCTT+TGG + chr8_1:27811517-27811536 Msa1187840:intron 30.0%
AGGATTATAGAGTAGTTAAG+AGG + chr8_1:27811574-27811593 Msa1187840:intron 30.0%
ACTGATTAATCCAATGTGAA+AGG + chr8_1:27811720-27811739 Msa1187840:intron 30.0%
TCATTTCAGATTAAAGTTGC+TGG + chr8_1:27811939-27811958 Msa1187840:intron 30.0%
CATTCTAGACCCTTTATTAA+TGG + chr8_1:27812058-27812077 Msa1187840:intron 30.0%
TAACAGCTATCTAACAACAT+CGG - chr8_1:27812208-27812227 None:intergenic 30.0%
TAGAAAGACAAAAGCAGAAT+AGG + chr8_1:27812403-27812422 Msa1187840:CDS 30.0%
TTCGCAAGGATTTATGTTAC+GGG - chr8_1:27809502-27809521 None:intergenic 35.0%
GTTCGCAAGGATTTATGTTA+CGG - chr8_1:27809503-27809522 None:intergenic 35.0%
TGAATCAGTAAGCAAAGTTG+TGG + chr8_1:27809562-27809581 Msa1187840:five_prime_UTR 35.0%
! AGCAAAGTTGTGGTATTGAA+AGG + chr8_1:27809572-27809591 Msa1187840:five_prime_UTR 35.0%
ATGACCTTGTAACTTTGTAC+TGG + chr8_1:27810047-27810066 Msa1187840:intron 35.0%
AAGACCAGTACAAAGTTACA+AGG - chr8_1:27810054-27810073 None:intergenic 35.0%
!! TAACTTTGTACTGGTCTTAG+AGG + chr8_1:27810056-27810075 Msa1187840:intron 35.0%
! TTCTCTAAGCTTGTTTACAC+TGG - chr8_1:27810508-27810527 None:intergenic 35.0%
TGTAAACAAGCTTAGAGAAC+AGG + chr8_1:27810509-27810528 Msa1187840:intron 35.0%
GAAAAGTAAATGGGAGAAGA+GGG - chr8_1:27810586-27810605 None:intergenic 35.0%
GGTGGGAAAAAATACAAAGA+AGG - chr8_1:27810765-27810784 None:intergenic 35.0%
AGTTGAGTCTTAGAAGAGAT+AGG + chr8_1:27810974-27810993 Msa1187840:intron 35.0%
AATATGTGAGAAAGCCAATG+CGG - chr8_1:27811017-27811036 None:intergenic 35.0%
!! TGTCACTATTGTTTCTATGG+TGG + chr8_1:27811038-27811057 Msa1187840:intron 35.0%
AAATAGGGTCAAATGTGCAT+TGG + chr8_1:27811103-27811122 Msa1187840:intron 35.0%
AATAGGGTCAAATGTGCATT+GGG + chr8_1:27811104-27811123 Msa1187840:intron 35.0%
ACTGTTACATAGCCTATGTT+TGG - chr8_1:27811158-27811177 None:intergenic 35.0%
CCACAACTCCTATAATAACA+CGG - chr8_1:27811219-27811238 None:intergenic 35.0%
GTTGTTAATGCCCTATATTC+TGG + chr8_1:27811301-27811320 Msa1187840:intron 35.0%
ATTGCCATGAAACTACAGAT+GGG + chr8_1:27811351-27811370 Msa1187840:intron 35.0%
!! TAGAGTAGTTAAGAGGTGTT+AGG + chr8_1:27811581-27811600 Msa1187840:intron 35.0%
!! AGAGTAGTTAAGAGGTGTTA+GGG + chr8_1:27811582-27811601 Msa1187840:intron 35.0%
!! GGGATAGCTTTGAATAATTG+AGG + chr8_1:27811691-27811710 Msa1187840:intron 35.0%
!! AAGTTTGTTAACAAGGCTTC+AGG - chr8_1:27812094-27812113 None:intergenic 35.0%
!!! ACTATAGCACTTTTTCGTAG+TGG + chr8_1:27812313-27812332 Msa1187840:intron 35.0%
! TTTAGAGGCACAACTATCAA+TGG - chr8_1:27812710-27812729 None:intergenic 35.0%
! TACACAACGCAAGGTTTTAC+TGG - chr8_1:27809525-27809544 None:intergenic 40.0%
! GTTGTGGTATTGAAAGGACA+AGG + chr8_1:27809578-27809597 Msa1187840:five_prime_UTR 40.0%
GTCGTGTTTGATGTTTGTGT+CGG + chr8_1:27809992-27810011 Msa1187840:intron 40.0%
GTGCTTCATAGACTTAGTAG+AGG + chr8_1:27810014-27810033 Msa1187840:intron 40.0%
CAAACTAGTGAGAACACCAT+CGG - chr8_1:27810151-27810170 None:intergenic 40.0%
! ATGGTGTTCTCACTAGTTTG+TGG + chr8_1:27810151-27810170 Msa1187840:intron 40.0%
! AGCAGCTTTTTGACAACACA+GGG - chr8_1:27810212-27810231 None:intergenic 40.0%
! TAGCAGCTTTTTGACAACAC+AGG - chr8_1:27810213-27810232 None:intergenic 40.0%
AGTGTATTGCAGAACAAGAG+CGG - chr8_1:27810278-27810297 None:intergenic 40.0%
AATAGTAGCTATAACGCCAC+TGG + chr8_1:27810319-27810338 Msa1187840:intron 40.0%
GATCCTCAATTGACAACACT+AGG + chr8_1:27810376-27810395 Msa1187840:intron 40.0%
GGCTCAACTAAATAAGACAG+AGG - chr8_1:27810565-27810584 None:intergenic 40.0%
GGAAAAGTAAATGGGAGAAG+AGG - chr8_1:27810587-27810606 None:intergenic 40.0%
CAAGACGCACTAATAAGCTT+GGG - chr8_1:27810786-27810805 None:intergenic 40.0%
ATATGTGAGAAAGCCAATGC+GGG - chr8_1:27811016-27811035 None:intergenic 40.0%
! TGTGCATTGGGAAGCAATTT+TGG + chr8_1:27811116-27811135 Msa1187840:intron 40.0%
CTGCAATATGCATTGTAGCA+AGG + chr8_1:27811193-27811212 Msa1187840:intron 40.0%
! TAGCAAGGCCGTGTTATTAT+AGG + chr8_1:27811208-27811227 Msa1187840:intron 40.0%
! CCGTGTTATTATAGGAGTTG+TGG + chr8_1:27811216-27811235 Msa1187840:intron 40.0%
TTAATGCCCTATATTCTGGC+TGG + chr8_1:27811305-27811324 Msa1187840:intron 40.0%
ATCTCACCAGCCAGAATATA+GGG - chr8_1:27811314-27811333 None:intergenic 40.0%
TATCTCACCAGCCAGAATAT+AGG - chr8_1:27811315-27811334 None:intergenic 40.0%
GATTGCCATGAAACTACAGA+TGG + chr8_1:27811350-27811369 Msa1187840:intron 40.0%
CATGAAACTACAGATGGGAT+GGG + chr8_1:27811356-27811375 Msa1187840:intron 40.0%
TGAAAGATTCAGGGATGGAT+TGG + chr8_1:27811389-27811408 Msa1187840:intron 40.0%
!! CTTTGGCTAAGCTTGTTGTT+AGG + chr8_1:27811534-27811553 Msa1187840:intron 40.0%
AGGTGTTAGGGAAGTTAGTT+AGG + chr8_1:27811594-27811613 Msa1187840:intron 40.0%
TGTTAGGGAAGTTAGTTAGG+TGG + chr8_1:27811597-27811616 Msa1187840:intron 40.0%
AAATAGCCCTCAATTGGTAG+AGG + chr8_1:27811664-27811683 Msa1187840:intron 40.0%
AGTGGTCTATGAGAGTTCTT+TGG + chr8_1:27812005-27812024 Msa1187840:CDS 40.0%
GTGGTCTATGAGAGTTCTTT+GGG + chr8_1:27812006-27812025 Msa1187840:CDS 40.0%
TAACAAGGCTTCAGGAAAGA+AGG - chr8_1:27812086-27812105 None:intergenic 40.0%
AGATAGCTGTTATAGCGTAG+TGG + chr8_1:27812216-27812235 Msa1187840:intron 40.0%
ACACTGTACTATACCTGTCT+AGG + chr8_1:27812363-27812382 Msa1187840:intron 40.0%
TACCTGTCTAGGTCTGTATA+TGG + chr8_1:27812374-27812393 Msa1187840:intron 40.0%
AACCATATACAGACCTAGAC+AGG - chr8_1:27812379-27812398 None:intergenic 40.0%
ATCCATTCCTTTCAAGCCTT+CGG - chr8_1:27812442-27812461 None:intergenic 40.0%
! AGGCTTGAAAGGAATGGATT+TGG + chr8_1:27812443-27812462 Msa1187840:CDS 40.0%
! CTTGAAAGGAATGGATTTGG+AGG + chr8_1:27812446-27812465 Msa1187840:CDS 40.0%
! AAAGGAATGGATTTGGAGGA+AGG + chr8_1:27812450-27812469 Msa1187840:CDS 40.0%
!!! CAAGGTTTTACTGGTTCGCA+AGG - chr8_1:27809516-27809535 None:intergenic 45.0%
AGATTTCGGTACACAACGCA+AGG - chr8_1:27809534-27809553 None:intergenic 45.0%
ATTGAAAGGACAAGGTTCCG+AGG + chr8_1:27809586-27809605 Msa1187840:five_prime_UTR 45.0%
TTTGTGGCAACAGTCACACA+TGG + chr8_1:27810167-27810186 Msa1187840:intron 45.0%
TTGTGGCAACAGTCACACAT+GGG + chr8_1:27810168-27810187 Msa1187840:intron 45.0%
! AGCTTTTTGACAACACAGGG+TGG - chr8_1:27810209-27810228 None:intergenic 45.0%
GGACCTAGTGTTGTCAATTG+AGG - chr8_1:27810382-27810401 None:intergenic 45.0%
TATTCTCAAAGCAGTGACCG+TGG - chr8_1:27810406-27810425 None:intergenic 45.0%
! GTGGAATGACATGGGTTAAG+TGG - chr8_1:27810635-27810654 None:intergenic 45.0%
! AAAGGGGTTTTTGTTCGAGC+CGG + chr8_1:27810716-27810735 Msa1187840:intron 45.0%
ATCGGTTGCCTTACAAACTC+CGG - chr8_1:27810738-27810757 None:intergenic 45.0%
ACGCACTAATAAGCTTGGGT+GGG - chr8_1:27810782-27810801 None:intergenic 45.0%
GCAAGACGCACTAATAAGCT+TGG - chr8_1:27810787-27810806 None:intergenic 45.0%
GCTTATTAGTGCGTCTTGCA+CGG + chr8_1:27810788-27810807 Msa1187840:intron 45.0%
CTTATTAGTGCGTCTTGCAC+GGG + chr8_1:27810789-27810808 Msa1187840:intron 45.0%
TCTTGTTAACGAGTGCTCCT+GGG - chr8_1:27810876-27810895 None:intergenic 45.0%
CACAGATGCGACATGAGTAT+TGG - chr8_1:27810937-27810956 None:intergenic 45.0%
AAAGTCAATTGTGCCCGCAT+TGG + chr8_1:27811000-27811019 Msa1187840:intron 45.0%
!! CCTAGCTTCCATTTTGACGT+GGG - chr8_1:27811067-27811086 None:intergenic 45.0%
!! TCCTAGCTTCCATTTTGACG+TGG - chr8_1:27811068-27811087 None:intergenic 45.0%
TAGGAGTTGTGGTTGCTTGA+AGG + chr8_1:27811227-27811246 Msa1187840:intron 45.0%
CCATCCCATCTGTAGTTTCA+TGG - chr8_1:27811358-27811377 None:intergenic 45.0%
CCATGAAACTACAGATGGGA+TGG + chr8_1:27811355-27811374 Msa1187840:intron 45.0%
CCTTCTCCTCTACCAATTGA+GGG - chr8_1:27811673-27811692 None:intergenic 45.0%
CCTCAATTGGTAGAGGAGAA+GGG + chr8_1:27811671-27811690 Msa1187840:intron 45.0%
GGAGAACTCTCCTTTCACAT+TGG - chr8_1:27811733-27811752 None:intergenic 45.0%
! AATTACTCCTCTGGTTCCCA+TGG - chr8_1:27811978-27811997 None:intergenic 45.0%
GGGAACCAGAGGAGTAATTA+CGG + chr8_1:27811979-27811998 Msa1187840:CDS 45.0%
CTTGTCCGTAATTACTCCTC+TGG - chr8_1:27811987-27812006 None:intergenic 45.0%
GAGGAGTAATTACGGACAAG+TGG + chr8_1:27811987-27812006 Msa1187840:CDS 45.0%
GTTCTTTGGGCTTGTGCTAT+TGG + chr8_1:27812019-27812038 Msa1187840:CDS 45.0%
GACAAAAGCAGAATAGGCAG+AGG + chr8_1:27812409-27812428 Msa1187840:CDS 45.0%
ATGGATTTGGAGGAAGGCAA+TGG + chr8_1:27812456-27812475 Msa1187840:CDS 45.0%
GCTCAGAGACCTCTGTAACA+CGG + chr8_1:27809874-27809893 Msa1187840:intron 50.0%
!! CAGAAGTGTCCGTGTTACAG+AGG - chr8_1:27809886-27809905 None:intergenic 50.0%
CTCTGTAACACGGACACTTC+TGG + chr8_1:27809884-27809903 Msa1187840:intron 50.0%
CTTCTGGTGAAAGACGTGTC+TGG + chr8_1:27809900-27809919 Msa1187840:intron 50.0%
GCAACAGTCACACATGGGAA+GGG + chr8_1:27810173-27810192 Msa1187840:intron 50.0%
GCTATAACGCCACTGGAACT+TGG + chr8_1:27810326-27810345 Msa1187840:intron 50.0%
ATAACGCCACTGGAACTTGG+TGG + chr8_1:27810329-27810348 Msa1187840:intron 50.0%
CAAACTCCACCAAGTTCCAG+TGG - chr8_1:27810338-27810357 None:intergenic 50.0%
TGACAACACTAGGTCCACCA+CGG + chr8_1:27810386-27810405 Msa1187840:intron 50.0%
GGGTTGCAGTGGAATGACAT+GGG - chr8_1:27810643-27810662 None:intergenic 50.0%
TGGGTTGCAGTGGAATGACA+TGG - chr8_1:27810644-27810663 None:intergenic 50.0%
!! TATGGGTGAATGGGTTGCAG+TGG - chr8_1:27810654-27810673 None:intergenic 50.0%
TGTTCGAGCCGGAGTTTGTA+AGG + chr8_1:27810727-27810746 Msa1187840:intron 50.0%
GACGCACTAATAAGCTTGGG+TGG - chr8_1:27810783-27810802 None:intergenic 50.0%
!! GAATGCTTAAAGAGTGCCCC+AGG + chr8_1:27810856-27810875 Msa1187840:intron 50.0%
CTTGTTAACGAGTGCTCCTG+GGG - chr8_1:27810875-27810894 None:intergenic 50.0%
! GTCTTGTTAACGAGTGCTCC+TGG - chr8_1:27810877-27810896 None:intergenic 50.0%
GGTGGATACCCACGTCAAAA+TGG + chr8_1:27811056-27811075 Msa1187840:intron 50.0%
CCCACGTCAAAATGGAAGCT+AGG + chr8_1:27811064-27811083 Msa1187840:intron 50.0%
GTTGCTTGAAGGAGACGTGT+GGG + chr8_1:27811238-27811257 Msa1187840:intron 50.0%
CCCTCAATTGGTAGAGGAGA+AGG + chr8_1:27811670-27811689 Msa1187840:intron 50.0%
CCCTTCTCCTCTACCAATTG+AGG - chr8_1:27811674-27811693 None:intergenic 50.0%
TGGCCTTTACTGCATGCCAT+GGG + chr8_1:27811959-27811978 Msa1187840:exon 50.0%
GTTCCCATGGCATGCAGTAA+AGG - chr8_1:27811965-27811984 None:intergenic 50.0%
GCAGAATAGGCAGAGGATGT+TGG + chr8_1:27812416-27812435 Msa1187840:CDS 50.0%
ATGTTGGCCGAAGGCTTGAA+AGG + chr8_1:27812432-27812451 Msa1187840:CDS 50.0%
GGCAACAGTCACACATGGGA+AGG + chr8_1:27810172-27810191 Msa1187840:intron 55.0%
TCTCAAAGCAGTGACCGTGG+TGG - chr8_1:27810403-27810422 None:intergenic 55.0%
GGTTGCTTGAAGGAGACGTG+TGG + chr8_1:27811237-27811256 Msa1187840:intron 55.0%
! CTGGCCTTTACTGCATGCCA+TGG + chr8_1:27811958-27811977 Msa1187840:exon 55.0%
GGCCGAAGGCTTGAAAGGAA+TGG + chr8_1:27812437-27812456 Msa1187840:CDS 55.0%
CACACATGGGAAGGGACTGC+TGG + chr8_1:27810181-27810200 Msa1187840:intron 60.0%
TGCGTCTTGCACGGGCTTGT+CGG + chr8_1:27810797-27810816 Msa1187840:intron 60.0%
CTGCATGCCATGGGAACCAG+AGG + chr8_1:27811968-27811987 Msa1187840:exon 60.0%
AGGCAGAGGATGTTGGCCGA+AGG + chr8_1:27812423-27812442 Msa1187840:CDS 60.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 27809467 27812792 27809467 ID=Msa1187840;Name=Msa1187840
chr8_1 mRNA 27809467 27812792 27809467 ID=Msa1187840-mRNA-1;Parent=Msa1187840;Name=Msa1187840-mRNA-1;_AED=0.00;_eAED=0.00;_QI=170|1|1|1|0.5|0.33|3|301|60
chr8_1 exon 27809467 27809607 27809467 ID=Msa1187840-mRNA-1:exon:9785;Parent=Msa1187840-mRNA-1
chr8_1 exon 27811948 27812052 27811948 ID=Msa1187840-mRNA-1:exon:9786;Parent=Msa1187840-mRNA-1
chr8_1 exon 27812385 27812792 27812385 ID=Msa1187840-mRNA-1:exon:9787;Parent=Msa1187840-mRNA-1
chr8_1 five_prime_UTR 27809467 27809607 27809467 ID=Msa1187840-mRNA-1:five_prime_utr;Parent=Msa1187840-mRNA-1
chr8_1 five_prime_UTR 27811948 27811976 27811948 ID=Msa1187840-mRNA-1:five_prime_utr;Parent=Msa1187840-mRNA-1
chr8_1 CDS 27811977 27812052 27811977 ID=Msa1187840-mRNA-1:cds;Parent=Msa1187840-mRNA-1
chr8_1 CDS 27812385 27812491 27812385 ID=Msa1187840-mRNA-1:cds;Parent=Msa1187840-mRNA-1
chr8_1 three_prime_UTR 27812492 27812792 27812492 ID=Msa1187840-mRNA-1:three_prime_utr;Parent=Msa1187840-mRNA-1
Gene Sequence

>Msa1187840

ATGGGAACCAGAGGAGTAATTACGGACAAGTGGTCTATGAGAGTTCTTTGGGCTTGTGCTATTGGAAGTGCTGTTAGTCTGTATATGGTTGCTGTAGAAAGACAAAAGCAGAATAGGCAGAGGATGTTGGCCGAAGGCTTGAAAGGAATGGATTTGGAGGAAGGCAATGGTGAAAATGTTTGA

Protein sequence

>Msa1187840

MGTRGVITDKWSMRVLWACAIGSAVSLYMVAVERQKQNRQRMLAEGLKGMDLEEGNGENV*