AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0045910

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0045910 MtrunA17_Chr1g0213121 96.992 1230 37 0 1 1230 141 1370 0.0 2462
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0045910 AT5G13590.5 26.823 1193 632 52 83 1219 181 1188 5.80e-47 184
Msa0045910 AT5G13590.1 32.775 537 268 24 701 1219 702 1163 3.70e-35 146
Msa0045910 AT5G13590.3 32.775 537 268 24 701 1219 702 1163 3.70e-35 146
Msa0045910 AT5G13590.2 32.775 537 268 24 701 1219 702 1163 3.70e-35 146
Msa0045910 AT5G13590.4 32.775 537 268 24 701 1219 702 1163 3.70e-35 146
Msa0045910 AT5G13590.6 32.775 537 268 25 701 1219 720 1181 3.83e-35 146

Find 379 sgRNAs with CRISPR-Local

Find 485 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAATTTAGTACTTATTTAT+TGG 0.148497 1_1:-77901404 Msa0045910:three_prime_UTR
AGAAATTCTAGATTGAATTT+TGG 0.169087 1_1:-77903096 Msa0045910:CDS
TCCATGTTTCTTGTTCTTCT+AGG 0.184922 1_1:+77901887 None:intergenic
GGCAAATCCTGAACTCTTAT+TGG 0.196285 1_1:-77905472 Msa0045910:CDS
CTTCTTGGGGACCTCCTTCT+AGG 0.205103 1_1:+77902508 None:intergenic
TCCTTCACTTCAAGCTTCTT+TGG 0.234510 1_1:-77905786 Msa0045910:five_prime_UTR
CCTCCTGGTGACCTCCTTCT+TGG 0.240688 1_1:+77902844 None:intergenic
GAAGCCAATGCCCGTCTTCT+AGG 0.249331 1_1:-77904706 Msa0045910:CDS
GCAGAAGACTATTCGGATTA+AGG 0.252972 1_1:+77901764 None:intergenic
TGTTATGACTTGGTCAGTTT+TGG 0.260198 1_1:-77901313 Msa0045910:three_prime_UTR
GGTTCTCCTTTCTCCATATT+GGG 0.260244 1_1:+77905279 None:intergenic
TTGGTGTGTCTATTCATTTA+AGG 0.266492 1_1:+77901289 None:intergenic
CAGGATTTGCCTTAATTGTT+TGG 0.267301 1_1:+77905484 None:intergenic
CACACCACCCACCCGTTTAT+AGG 0.271539 1_1:+77901454 None:intergenic
CCATCTGGAGATCTTCTTCT+TGG 0.272717 1_1:+77902493 None:intergenic
TGTGGTACTCTCTGCTGTTT+TGG 0.286701 1_1:+77904564 None:intergenic
GGAGGAATCAAACCCTTCTT+TGG 0.286984 1_1:-77905568 Msa0045910:CDS
CAGTTTAGTGATTTAGTTGC+AGG 0.293863 1_1:-77905974 Msa0045910:five_prime_UTR
TAAATAAGTACTAAATTATT+AGG 0.296432 1_1:+77901408 None:intergenic
TTCATCGGCAACTTCTTTCT+TGG 0.299088 1_1:+77904231 None:intergenic
GTTTCTAGATATAGCAAGTT+TGG 0.308031 1_1:+77901481 None:intergenic
AGGATTTGCCTTAATTGTTT+GGG 0.311598 1_1:+77905485 None:intergenic
ATTTAGTTGGGACTTCAGTA+TGG 0.315056 1_1:-77901506 Msa0045910:three_prime_UTR
GATCTTCTATGAGTGATTTC+AGG 0.318142 1_1:+77902457 None:intergenic
TGCATTCTAGCAGGGCAAAC+TGG 0.321750 1_1:-77905167 Msa0045910:CDS
GCGCCACGGTATTGTTGATT+TGG 0.323386 1_1:+77902991 None:intergenic
TTTGGAAGAGGCTTCGGTTC+AGG 0.324689 1_1:-77905768 Msa0045910:five_prime_UTR
TTCAGGATCCCAAACAATTA+AGG 0.327840 1_1:-77905493 Msa0045910:CDS
TTGTTATTACCATTGTTATA+AGG 0.329381 1_1:+77902058 None:intergenic
TGGTGTGTCTATTCATTTAA+GGG 0.333943 1_1:+77901290 None:intergenic
CTATCAAATGTCAGTATTGC+AGG 0.334431 1_1:-77905836 Msa0045910:five_prime_UTR
AGTAAAACTAGGCCTATTTC+AGG 0.335446 1_1:-77903395 Msa0045910:CDS
AGGGATGAAGTTTACATTGA+TGG 0.338714 1_1:-77903162 Msa0045910:CDS
CAAGAGAGTCCTATAGTTCC+TGG 0.339885 1_1:-77905378 Msa0045910:CDS
AGGTTCTCCTTTCTCCATAT+TGG 0.340151 1_1:+77905278 None:intergenic
CCTCCAATACATCTACTATT+AGG 0.341848 1_1:+77902772 None:intergenic
TTTCATTCAATCAATAAATT+CGG 0.345843 1_1:-77907183 Msa0045910:five_prime_UTR
CAATAAGATACAACCCAATA+TGG 0.350047 1_1:-77905292 Msa0045910:CDS
AGCTTCTTTGGAAGAGGCTT+CGG 0.351485 1_1:-77905774 Msa0045910:five_prime_UTR
TCTGTTAAAACTTCTATTGA+TGG 0.351544 1_1:-77905096 Msa0045910:CDS
AGAAGATCTCCAGATGGTTT+TGG 0.354830 1_1:-77902487 Msa0045910:CDS
CCTGATGATTCATATGTTAA+TGG 0.355936 1_1:-77902910 Msa0045910:CDS
TTCCCTTGCGAAACATTAAC+TGG 0.356403 1_1:+77903686 None:intergenic
AAGAATAGTTTATTCGATAC+AGG 0.357041 1_1:-77906296 Msa0045910:five_prime_UTR
TCAGGCATGGTGGACAAGTT+TGG 0.357207 1_1:-77901847 Msa0045910:CDS
CTGAACAAGTAAAATTTAGT+TGG 0.361738 1_1:-77901519 Msa0045910:three_prime_UTR
TTTGCAGCCAATAAGAGTTC+AGG 0.362535 1_1:+77905465 None:intergenic
TCTACCAGATGGACTCCTAT+TGG 0.363112 1_1:+77902270 None:intergenic
ATCCATTCCCTCAAATTGTT+GGG 0.366281 1_1:+77902660 None:intergenic
AAAGCTTTCGTTACTTCAAC+TGG 0.366983 1_1:-77904961 Msa0045910:CDS
ACTACCGTTAGTAACATCTT+TGG 0.371285 1_1:+77903469 None:intergenic
CATCTGGAGATCTTCTTCTT+GGG 0.375256 1_1:+77902494 None:intergenic
ATGCAAATACTTCTAGTGTT+AGG 0.378253 1_1:-77904777 Msa0045910:CDS
TGTTTCTCTTACCTCGCATA+TGG 0.383045 1_1:+77903955 None:intergenic
GGCAGCGATCTGCCTGAAAT+AGG 0.386193 1_1:+77903383 None:intergenic
AAAGATAAAGTAGTACTTCC+AGG 0.386693 1_1:+77905360 None:intergenic
CTAGAAACTGAACCTATAAA+CGG 0.387005 1_1:-77901466 Msa0045910:three_prime_UTR
TTTAGACTTATTATTTCAAA+TGG 0.388351 1_1:-77901174 Msa0045910:three_prime_UTR
TCCTCCAGCAGAAGACTATT+CGG 0.388487 1_1:+77901757 None:intergenic
GAATCTGAGCGTGAATATTC+TGG 0.390340 1_1:-77903030 Msa0045910:CDS
ATGAGCAAGAAGATAATTTC+AGG 0.390395 1_1:-77901865 Msa0045910:CDS
GGTGAGGAGAGGAGGAGGTT+TGG 0.393262 1_1:-77902115 Msa0045910:CDS
CATCTACTATTAGGACTAAC+AGG 0.396484 1_1:+77902781 None:intergenic
TGTGTTGTGATGTGAGAAAA+AGG 0.399388 1_1:+77907023 None:intergenic
CTTTCTTCGCAGTTGTTTCG+TGG 0.402115 1_1:-77907074 Msa0045910:five_prime_UTR
AAGTTCTCATCATACGGTTC+TGG 0.402426 1_1:+77904745 None:intergenic
CCAGTGAAAACAGGTCGATC+AGG 0.402633 1_1:+77902403 None:intergenic
ATAGCCGAGGTCGTGGTGAC+TGG 0.403031 1_1:-77903053 Msa0045910:CDS
CAGAAGACTATTCGGATTAA+GGG 0.405190 1_1:+77901765 None:intergenic
CGATTATCATTGTTATGACT+TGG 0.408374 1_1:-77901323 Msa0045910:three_prime_UTR
GGAGGGGATGGTTCAGACTT+AGG 0.409337 1_1:-77902754 Msa0045910:CDS
AAACAGTTTACGTGCTCGAC+TGG 0.410366 1_1:-77905042 Msa0045910:CDS
GTAGTACTTCCAGGAACTAT+AGG 0.411692 1_1:+77905369 None:intergenic
CCATCAGTGGCTTGATTGCA+AGG 0.411970 1_1:+77903608 None:intergenic
ATTCTGTCAACCCTGTATAA+TGG 0.412769 1_1:+77902433 None:intergenic
AGTTGCTATTTCTAATCCTA+TGG 0.416946 1_1:-77904287 Msa0045910:CDS
TTAGCAGATCCTTCCATCTT+CGG 0.419561 1_1:+77903506 None:intergenic
CACGACCTTCTAATGATATG+AGG 0.420923 1_1:-77902339 Msa0045910:CDS
AGCGTTCTTATAGCAAAGAT+TGG 0.421273 1_1:-77906174 Msa0045910:five_prime_UTR
ATAGAAGATCACCATTATAC+AGG 0.421452 1_1:-77902444 Msa0045910:CDS
AAGGAAATGGTGAGGAGAGG+AGG 0.422893 1_1:-77902123 Msa0045910:CDS
GTATCTGTTAAACTAAATTC+AGG 0.422945 1_1:-77904850 Msa0045910:CDS
ATTAACAATGGTGAAGGAAA+TGG 0.423862 1_1:-77902136 Msa0045910:CDS
TTATCATAATTACCTGAGTC+AGG 0.425379 1_1:+77903926 None:intergenic
GAAATGGTGAGGAGAGGAGG+AGG 0.429153 1_1:-77902120 Msa0045910:CDS
TTAGACTTATTATTTCAAAT+GGG 0.429165 1_1:-77901173 Msa0045910:three_prime_UTR
CATCCATTCCCTCAAATTGT+TGG 0.430239 1_1:+77902659 None:intergenic
CGGAACCTGCTCAGAATTTG+AGG 0.431303 1_1:+77904318 None:intergenic
AGTACTAAATTATTAGGAAC+AGG 0.433509 1_1:+77901414 None:intergenic
ACCACCACTCCTTTCTCCAC+TGG 0.435208 1_1:+77903899 None:intergenic
TGAACGACTCCTCGATCTGA+TGG 0.435729 1_1:+77902549 None:intergenic
TGCTATTGCTGATACTGATC+TGG 0.436561 1_1:-77902950 Msa0045910:CDS
TCTAATCCTATGGTTACTCC+TGG 0.438282 1_1:-77904277 Msa0045910:CDS
CTCTTATTGGCTGCAAAAGA+TGG 0.438646 1_1:-77905459 Msa0045910:CDS
AATGTAGAATCGACATTAGA+TGG 0.438760 1_1:+77904628 None:intergenic
CCCTTTCTACCAGTTCTGTC+GGG 0.439860 1_1:-77905695 Msa0045910:five_prime_UTR
AGGAAGAGATGGCATTCAAA+TGG 0.440656 1_1:-77902821 Msa0045910:CDS
AGTGGGATAAAGTCCTTTGC+TGG 0.441090 1_1:-77905998 Msa0045910:five_prime_UTR
GGGAAAGGGACTTTGATAGA+AGG 0.442842 1_1:-77901937 Msa0045910:CDS
TCATATGTTAATGGTCGGTT+AGG 0.443348 1_1:-77902901 Msa0045910:CDS
GGGTTTGATTCCTCCCGCTT+CGG 0.443417 1_1:+77905576 None:intergenic
CCAGCAGTAGCTGTCGGACT+TGG 0.445295 1_1:+77904802 None:intergenic
ATGCCATCTCTTCCTCCTCC+TGG 0.446471 1_1:+77902829 None:intergenic
ATGTTGGAAGATGATTCTTT+TGG 0.446585 1_1:-77904106 Msa0045910:CDS
ATGGCATTCAAATGGGTCAT+AGG 0.447730 1_1:-77902813 Msa0045910:CDS
ACTCTCTCCCCAGTGAAAAC+AGG 0.449421 1_1:+77902394 None:intergenic
TTTACTAGGGGATGACGAAC+TGG 0.451311 1_1:+77903412 None:intergenic
ATCATTATCAGATCGATCTC+GGG 0.452747 1_1:+77902210 None:intergenic
CAAGGTCTGTCATTTCCAAT+AGG 0.455806 1_1:-77902285 Msa0045910:CDS
AGTGGAGGGCCTATGCATTC+CGG 0.455841 1_1:-77902172 Msa0045910:CDS
GTCAATGGACATCTCCTAGA+AGG 0.456043 1_1:-77902522 Msa0045910:CDS
GTCTCCTTCACCTCCTCGTA+CGG 0.456230 1_1:-77905912 Msa0045910:five_prime_UTR
GTATTTCCTGACACACTTGA+TGG 0.458004 1_1:-77903341 Msa0045910:CDS
TCTTGACTACCCTCATGACT+TGG 0.461485 1_1:+77904592 None:intergenic
TTGTCACCATCAAGTGTGTC+AGG 0.461496 1_1:+77903335 None:intergenic
TGAACAAGTAAAATTTAGTT+GGG 0.461924 1_1:-77901518 Msa0045910:three_prime_UTR
AATAATTGTCTCTGAAACTC+AGG 0.463199 1_1:-77903642 Msa0045910:CDS
TTCTTTGCTTATGCCGAAGC+GGG 0.463936 1_1:-77905589 Msa0045910:CDS
ATCAAGGGTAGGAATGGAAA+TGG 0.464585 1_1:-77901914 Msa0045910:CDS
AGTCCTAATAGTAGATGTAT+TGG 0.466113 1_1:-77902775 Msa0045910:CDS
TGAAGTGAGGCTAAGGATAG+TGG 0.466383 1_1:-77906363 Msa0045910:five_prime_UTR
ATCAGATAACCCGACAGAAC+TGG 0.467151 1_1:+77905686 None:intergenic
TGAGAGAGGCAATAACTTGA+GGG 0.467420 1_1:-77901957 Msa0045910:CDS
GTTTCCGTCTGTTACAAGTT+CGG 0.467750 1_1:-77905319 Msa0045910:CDS
ACTTCAAGCTTCTTTGGAAG+AGG 0.468551 1_1:-77905780 Msa0045910:five_prime_UTR
CAAGTCATAACAATGATAAT+CGG 0.470061 1_1:+77901324 None:intergenic
AAAGATAGTTCTAATGAGAC+AGG 0.471095 1_1:+77905258 None:intergenic
CGTCATCCCCTAGTAAAACT+AGG 0.471888 1_1:-77903406 Msa0045910:CDS
CATCATTATCAGATCGATCT+CGG 0.472429 1_1:+77902209 None:intergenic
ACCTCTTCACGGCCTGAGAT+GGG 0.473312 1_1:+77906144 None:intergenic
TTTACAGACACGGCACTTGT+TGG 0.474189 1_1:+77905009 None:intergenic
CTGTTAAAACTTCTATTGAT+GGG 0.474367 1_1:-77905095 Msa0045910:CDS
ATTGGAATCATGCCCATCTC+AGG 0.476661 1_1:-77906156 Msa0045910:five_prime_UTR
GGACTTGGCAAACTAACAAT+AGG 0.476939 1_1:+77904817 None:intergenic
GGAGGTACCCTCCTTTGATT+CGG 0.477122 1_1:-77905934 Msa0045910:five_prime_UTR
TCGACATACTTCTGAACAAA+AGG 0.479784 1_1:+77904886 None:intergenic
ACAATGGATGCATGGGATGA+AGG 0.481287 1_1:-77905132 Msa0045910:CDS
CCCGACAGAACTGGTAGAAA+GGG 0.485878 1_1:+77905695 None:intergenic
GGAGTCGTTCACCCGGTCAA+TGG 0.486073 1_1:-77902537 Msa0045910:CDS
GGATGTCCACCAAAACCATC+TGG 0.486343 1_1:+77902478 None:intergenic
AGAAGGATCAAGGGTAGGAA+TGG 0.486430 1_1:-77901920 Msa0045910:CDS
AGATCGCTGCCAACTCGAGC+TGG 0.486756 1_1:-77903371 Msa0045910:CDS
ACCCTTTCTACCAGTTCTGT+CGG 0.487090 1_1:-77905696 Msa0045910:five_prime_UTR
CACCTCTTCACGGCCTGAGA+TGG 0.487293 1_1:+77906143 None:intergenic
TCCCCAACAATTTGAGGGAA+TGG 0.488319 1_1:-77902662 Msa0045910:CDS
ATTTCCAATAGGAGTCCATC+TGG 0.491818 1_1:-77902274 Msa0045910:CDS
AGTTTCCTCAAATTCTGAGC+AGG 0.492604 1_1:-77904323 Msa0045910:CDS
GGACTTTGATAGAAGGATCA+AGG 0.493120 1_1:-77901930 Msa0045910:CDS
TACACGTCCCCAACAATTTG+AGG 0.493340 1_1:-77902668 Msa0045910:CDS
GATAATAAACCAGTGGAGAA+AGG 0.494205 1_1:-77903908 Msa0045910:CDS
CTTTATTTGAAGTGAGGCTA+AGG 0.494568 1_1:-77906370 Msa0045910:five_prime_UTR
AACCTTGTCAACTGATATGT+TGG 0.495212 1_1:-77904122 Msa0045910:CDS
ACCCGACAGAACTGGTAGAA+AGG 0.496714 1_1:+77905694 None:intergenic
TAGAAACTGAACCTATAAAC+GGG 0.497276 1_1:-77901465 Msa0045910:three_prime_UTR
CTATTCACAACATCCAAAGA+AGG 0.499854 1_1:+77905555 None:intergenic
TCTAGGAGATGTCCATTGAC+CGG 0.502238 1_1:+77902525 None:intergenic
CCATTAACATATGAATCATC+AGG 0.503736 1_1:+77902910 None:intergenic
GTCGGGTTATCTGATACCAT+TGG 0.504330 1_1:-77905678 Msa0045910:five_prime_UTR
TGAACCTAGAAGACGGGCAT+TGG 0.505164 1_1:+77904702 None:intergenic
TTCAATTACCGGGTTTCCAA+TGG 0.507775 1_1:+77905662 None:intergenic
GTTACTAACGGTAGTAATCA+AGG 0.509540 1_1:-77903461 Msa0045910:CDS
GCTTAAGCCATTCTAAGTGG+TGG 0.511960 1_1:-77901635 Msa0045910:three_prime_UTR
CTACTCGTGTGCATTCTAGC+AGG 0.512507 1_1:-77905176 Msa0045910:CDS
TCCAAAGAAGCTTGAAGTGA+AGG 0.512770 1_1:+77905785 None:intergenic
CAATGGATGCATGGGATGAA+GGG 0.513916 1_1:-77905131 Msa0045910:CDS
GAGGCAATAACTTGAGGGAA+AGG 0.519366 1_1:-77901952 Msa0045910:CDS
ATAGAAGAATATTTCAAGCC+AGG 0.520872 1_1:+77904259 None:intergenic
GGTGAAGGAGACCGAATCAA+AGG 0.521308 1_1:+77905923 None:intergenic
GGAAGAGATGGCATTCAAAT+GGG 0.521400 1_1:-77902820 Msa0045910:CDS
GCATTCTAGCAGGGCAAACT+GGG 0.521448 1_1:-77905166 Msa0045910:CDS
AAATTCTGAGCAGGTTCCGC+TGG 0.525521 1_1:-77904314 Msa0045910:CDS
ATATATGAGCCATCATTCAA+TGG 0.525555 1_1:+77902871 None:intergenic
GATGATGAATACTTCGGTAG+TGG 0.525570 1_1:-77902190 Msa0045910:CDS
AGGCAATAACTTGAGGGAAA+GGG 0.526122 1_1:-77901951 Msa0045910:CDS
TAATCCGAATAGTCTTCTGC+TGG 0.526209 1_1:-77901761 Msa0045910:three_prime_UTR
GTCTGTCTCTTGAAAATCTG+TGG 0.527974 1_1:+77903136 None:intergenic
AATATTACTCACAGTGCACT+TGG 0.527982 1_1:-77905069 Msa0045910:CDS
CTGATTAAAATTCTACCAGA+TGG 0.528653 1_1:+77902259 None:intergenic
TTATTGGAGTGCTTTGCTGT+TGG 0.528727 1_1:-77901388 Msa0045910:three_prime_UTR
ATCTGATACCATTGGAAACC+CGG 0.528772 1_1:-77905670 Msa0045910:five_prime_UTR
TAGCCGAGGTCGTGGTGACT+GGG 0.529918 1_1:-77903052 Msa0045910:CDS
ATGTTTCTTGTTCTTCTAGG+TGG 0.530945 1_1:+77901890 None:intergenic
AACAATGGTAATAACAATGT+TGG 0.531891 1_1:-77902052 Msa0045910:CDS
GATGAACATAATGACATTTG+AGG 0.532123 1_1:+77904517 None:intergenic
ATGTCCCTCATATCATTAGA+AGG 0.532489 1_1:+77902334 None:intergenic
GAGAGAGTGGTGAGGAGACA+TGG 0.533770 1_1:-77902379 Msa0045910:CDS
TGAATACTACAATGGATGCA+TGG 0.533948 1_1:-77905140 Msa0045910:CDS
CAGGTGCACCTATCAAGAAA+AGG 0.533951 1_1:-77905817 Msa0045910:five_prime_UTR
ATGGTATCCTCCACTTTGGA+AGG 0.534162 1_1:+77903974 None:intergenic
TCACCAGGAGGAGGAAGAGA+TGG 0.534938 1_1:-77902832 Msa0045910:CDS
TCTTCCATGCAGAGAAGGGG+TGG 0.534969 1_1:-77902598 Msa0045910:CDS
GTTACTTCAACTGGTCTGTA+CGG 0.535226 1_1:-77904952 Msa0045910:CDS
TTCCACCACACGAGATGAAG+TGG 0.535529 1_1:+77903862 None:intergenic
AGGAAATAAACACCTCTTCA+CGG 0.536910 1_1:+77906133 None:intergenic
AGAAGGAGGTCACCAGGAGG+AGG 0.537792 1_1:-77902841 Msa0045910:CDS
TTTAGTTGGGACTTCAGTAT+GGG 0.537824 1_1:-77901505 Msa0045910:three_prime_UTR
GAACAGAATCTATAATGTCT+AGG 0.538171 1_1:+77901998 None:intergenic
ACAGACACGGCACTTGTTGG+TGG 0.538646 1_1:+77905012 None:intergenic
CCTAATAGTAGATGTATTGG+AGG 0.538765 1_1:-77902772 Msa0045910:CDS
AGTAGATGTATTGGAGGGGA+TGG 0.538810 1_1:-77902766 Msa0045910:CDS
TCAAGGGTAGGAATGGAAAT+GGG 0.539279 1_1:-77901913 Msa0045910:CDS
ATACAACCCAATATGGAGAA+AGG 0.539741 1_1:-77905285 Msa0045910:CDS
AAATACTTCTAGTGTTAGGT+TGG 0.540184 1_1:-77904773 Msa0045910:CDS
ATCTAATGAACCTAGAAGAC+GGG 0.540750 1_1:+77904696 None:intergenic
AGACCAGTTAATGTTTCGCA+AGG 0.543573 1_1:-77903689 Msa0045910:CDS
CAGTGAAAACAGGTCGATCA+GGG 0.543897 1_1:+77902404 None:intergenic
GAAGGTCGTGATATAAATTG+AGG 0.544234 1_1:+77902352 None:intergenic
TCTGTCTCTTGAAAATCTGT+GGG 0.544472 1_1:+77903137 None:intergenic
ATCTGGAGATCTTCTTCTTG+GGG 0.546028 1_1:+77902495 None:intergenic
CTATTGGAAATGACAGACCT+TGG 0.546564 1_1:+77902286 None:intergenic
GAAGATGATGATTATGAAGA+TGG 0.547048 1_1:-77904019 Msa0045910:CDS
CTCACTTCAAATAAAGTAGC+GGG 0.547633 1_1:+77906377 None:intergenic
ACACGTCCCCAACAATTTGA+GGG 0.547961 1_1:-77902667 Msa0045910:CDS
CTAGGAGATGTCCATTGACC+GGG 0.548103 1_1:+77902526 None:intergenic
GATGGTCTAGCACTTAGCAT+TGG 0.549129 1_1:-77905441 Msa0045910:CDS
GAAAACTCAAGCACTTCTCA+AGG 0.549211 1_1:-77905866 Msa0045910:five_prime_UTR
ATGAGAGAGGCAATAACTTG+AGG 0.549473 1_1:-77901958 Msa0045910:CDS
TCCACTTTGGAAGGTTCCAG+TGG 0.549663 1_1:+77903983 None:intergenic
ATGATATTTCCAGAGTGAAG+AGG 0.550005 1_1:-77901808 Msa0045910:CDS
GTTAATGTTAACCATCCTAC+CGG 0.550188 1_1:+77902153 None:intergenic
CAGGTGTGCCAATCAAGAAA+AGG 0.552564 1_1:-77905955 Msa0045910:five_prime_UTR
GCCTATGCATTCCGGTAGGA+TGG 0.553493 1_1:-77902164 Msa0045910:CDS
GGTAGAAAGCCATTGAATGA+TGG 0.553531 1_1:-77902880 Msa0045910:CDS
AAGACCACCCCTTCTCTGCA+TGG 0.553535 1_1:+77902594 None:intergenic
GAAAAGGTGATGCTCAATGA+AGG 0.553951 1_1:-77905528 Msa0045910:CDS
GGAACATTCAACCACATCAC+TGG 0.556454 1_1:-77905723 Msa0045910:five_prime_UTR
GATGAATACTTCGGTAGTGG+AGG 0.557632 1_1:-77902187 Msa0045910:CDS
CTTTACTAACTACTTCATTG+TGG 0.557864 1_1:+77903819 None:intergenic
TCCCACTTCATCTCGTGTGG+TGG 0.558202 1_1:-77903864 Msa0045910:CDS
TTGAATGATTAAATGTTGGT+AGG 0.559384 1_1:+77901351 None:intergenic
AGTACCACAACAAATCAGTT+GGG 0.559569 1_1:-77904550 Msa0045910:CDS
CCGCTACTTTATTTGAAGTG+AGG 0.560549 1_1:-77906376 Msa0045910:five_prime_UTR
CGATGTTACCAATATTGACA+TGG 0.561830 1_1:-77905622 Msa0045910:exon
TGGTGAGGTTCGAGAACCAC+TGG 0.562059 1_1:-77903999 Msa0045910:CDS
GCATATGGTATCCTCCACTT+TGG 0.562239 1_1:+77903970 None:intergenic
TTCAGACCTCCTTATAACAA+TGG 0.563574 1_1:-77902067 Msa0045910:CDS
TTTGGATGTTGTGAATAGCA+AGG 0.563598 1_1:-77905550 Msa0045910:CDS
AGAGTTAATAGCCGAGGTCG+TGG 0.563629 1_1:-77903060 Msa0045910:CDS
TTTACCCAACTGATTTGTTG+TGG 0.563925 1_1:+77904546 None:intergenic
GCACCAAGAAGGAGGTCACC+AGG 0.564752 1_1:-77902847 Msa0045910:CDS
TCTTCCGTACGAGGAGGTGA+AGG 0.565270 1_1:+77905908 None:intergenic
GATCTGGAGTACAATAATGC+TGG 0.565354 1_1:-77902934 Msa0045910:CDS
ATCACTAAACTGCCCAGCAA+AGG 0.565419 1_1:+77905985 None:intergenic
CCAAGTCCGACAGCTACTGC+TGG 0.565564 1_1:-77904802 Msa0045910:CDS
CATAGTGAGAAATTTATGAG+AGG 0.565699 1_1:-77902721 Msa0045910:CDS
CAACATGACTGGCACTGTCA+TGG 0.568682 1_1:+77904492 None:intergenic
GTTAACATTAACAATGGTGA+AGG 0.571735 1_1:-77902142 Msa0045910:CDS
TATTCACAACATCCAAAGAA+GGG 0.571735 1_1:+77905556 None:intergenic
ATTCAATCTAGAATTTCTAG+TGG 0.571786 1_1:+77903101 None:intergenic
CAACAATTTGAGGGAATGGA+TGG 0.573050 1_1:-77902658 Msa0045910:CDS
ATGATTCATATGTTAATGGT+CGG 0.573230 1_1:-77902906 Msa0045910:CDS
TGTGTTGAATTCAACATGAC+TGG 0.574452 1_1:+77904481 None:intergenic
TTGGTTGAATGATTAAATGT+TGG 0.575211 1_1:+77901347 None:intergenic
GTGAAGGAAATGGTGAGGAG+AGG 0.576483 1_1:-77902126 Msa0045910:CDS
TTAGCTTAAGCCATTCTAAG+TGG 0.577546 1_1:-77901638 Msa0045910:three_prime_UTR
TAGACTTATTATTTCAAATG+GGG 0.577841 1_1:-77901172 None:intergenic
TCATAACAATGATAATCGGT+TGG 0.579043 1_1:+77901328 None:intergenic
GAACGACTCCTCGATCTGAT+GGG 0.579413 1_1:+77902550 None:intergenic
TCCATTCCCTCAAATTGTTG+GGG 0.579605 1_1:+77902661 None:intergenic
AACTCAGTTTCTTCCGTACG+AGG 0.581519 1_1:+77905899 None:intergenic
TTGATAGAAGGATCAAGGGT+AGG 0.583187 1_1:-77901925 Msa0045910:CDS
CAAGAGGAAGAGGACGGGGT+AGG 0.583638 1_1:-77902627 Msa0045910:CDS
CCTTGCAATCAAGCCACTGA+TGG 0.583732 1_1:-77903608 Msa0045910:CDS
GAGTACCACAACAAATCAGT+TGG 0.584233 1_1:-77904551 Msa0045910:CDS
CAAGAAGATAATTTCAGGCA+TGG 0.584482 1_1:-77901860 Msa0045910:CDS
GATAATGATGATGAATACTT+CGG 0.585751 1_1:-77902196 Msa0045910:CDS
ATCAACAATACCGTGGCGCA+AGG 0.585756 1_1:-77902987 Msa0045910:CDS
AACAGTTTACGTGCTCGACT+GGG 0.586460 1_1:-77905041 Msa0045910:CDS
CTAATAGTAGATGTATTGGA+GGG 0.586615 1_1:-77902771 Msa0045910:CDS
GTACACACAGGTTTCACAGC+AGG 0.586615 1_1:+77904436 None:intergenic
GACTTTGATAGAAGGATCAA+GGG 0.588082 1_1:-77901929 Msa0045910:CDS
AAAGAAGCTTGAAGTGAAGG+AGG 0.588171 1_1:+77905788 None:intergenic
AGTCTTCTGCTGGAGGACAA+TGG 0.588518 1_1:-77901751 Msa0045910:three_prime_UTR
AGTTTAACAGATACTCTAGA+GGG 0.589079 1_1:+77904859 None:intergenic
TGAGGGACATTGACTCTGCA+AGG 0.589450 1_1:-77902321 Msa0045910:CDS
CAAGGGACCATGGTCATCCA+AGG 0.589530 1_1:-77902303 Msa0045910:CDS
AATTTGAGGGAATGGATGGT+CGG 0.590551 1_1:-77902654 Msa0045910:CDS
ATTGACTCTGCAAGGGACCA+TGG 0.590625 1_1:-77902313 Msa0045910:CDS
GAATACTACAATGGATGCAT+GGG 0.590714 1_1:-77905139 Msa0045910:CDS
TGCAGAAAAGTAAACAGATG+TGG 0.590766 1_1:-77901235 Msa0045910:three_prime_UTR
ACGACCTTCTAATGATATGA+GGG 0.592017 1_1:-77902338 Msa0045910:CDS
GCTCATATATTGCACCAAGA+AGG 0.593462 1_1:-77902858 Msa0045910:CDS
GCCCATCTCAGGCCGTGAAG+AGG 0.594748 1_1:-77906145 Msa0045910:intron
TGTGTGTGTGCAAGAGTCGA+TGG 0.595528 1_1:-77903744 Msa0045910:CDS
ATTAGAACTATCTTTAAGCA+AGG 0.596628 1_1:-77905250 Msa0045910:CDS
TTATTACCATTGTTATAAGG+AGG 0.596789 1_1:+77902061 None:intergenic
AGGAGGTTTGGTGAAAGAAG+AGG 0.597081 1_1:-77902103 Msa0045910:CDS
GCGAGCAGATTGTCTTGTCA+AGG 0.597545 1_1:-77901567 Msa0045910:three_prime_UTR
CTGGGATCTGAATACTACAA+TGG 0.598186 1_1:-77905148 Msa0045910:CDS
TCTGCAACCATCATGTTCAT+CGG 0.598749 1_1:+77904216 None:intergenic
ACATCTCTTCCAGCTCGAGT+TGG 0.600517 1_1:+77903362 None:intergenic
GTGGGATAAAGTCCTTTGCT+GGG 0.600853 1_1:-77905997 Msa0045910:five_prime_UTR
TGTTGTGAATAGCAAGGAAA+AGG 0.601251 1_1:-77905544 Msa0045910:CDS
AGAAGACTATTCGGATTAAG+GGG 0.601506 1_1:+77901766 None:intergenic
TTTGCTTATGCCGAAGCGGG+AGG 0.601797 1_1:-77905586 Msa0045910:CDS
TCCGAATAGTCTTCTGCTGG+AGG 0.601893 1_1:-77901758 Msa0045910:three_prime_UTR
GAAACAGAACATCCTGACTC+AGG 0.602901 1_1:-77903938 Msa0045910:CDS
AGATCGAGGAGTCGTTCACC+CGG 0.603349 1_1:-77902544 Msa0045910:CDS
TAAATCTGAACCAAGTCATG+AGG 0.604815 1_1:-77904602 Msa0045910:CDS
CATGTCAATATTGGTAACAT+CGG 0.605115 1_1:+77905623 None:intergenic
ACCACTGGAACCTTCCAAAG+TGG 0.607998 1_1:-77903984 Msa0045910:CDS
TATCACATGTCTTCCATCAG+TGG 0.608534 1_1:+77903595 None:intergenic
TTCCAACATATCAGTTGACA+AGG 0.612146 1_1:+77904120 None:intergenic
GCAGATTGTCTTGTCAAGGA+AGG 0.613499 1_1:-77901563 Msa0045910:three_prime_UTR
AAACTGAACCTATAAACGGG+TGG 0.616035 1_1:-77901462 Msa0045910:three_prime_UTR
TACTCGTGTGCATTCTAGCA+GGG 0.616378 1_1:-77905175 Msa0045910:CDS
CCACTGTCTCGTGCATCAGT+AGG 0.616416 1_1:+77904175 None:intergenic
AACTGAACCTATAAACGGGT+GGG 0.616733 1_1:-77901461 Msa0045910:three_prime_UTR
TATCTAATGAACCTAGAAGA+CGG 0.619088 1_1:+77904695 None:intergenic
TAGTTTAACAGATACTCTAG+AGG 0.619656 1_1:+77904858 None:intergenic
ATTCCCAGTCACCACGACCT+CGG 0.619986 1_1:+77903049 None:intergenic
CATATATTGCACCAAGAAGG+AGG 0.621278 1_1:-77902855 Msa0045910:CDS
GAAGGAGACCGAATCAAAGG+AGG 0.621543 1_1:+77905926 None:intergenic
TTCAAGCCAGGAGTAACCAT+AGG 0.621756 1_1:+77904271 None:intergenic
CCTCACTTCAAATAAAGTAG+CGG 0.625650 1_1:+77906376 None:intergenic
GTTAATACTGCTGTACACAC+AGG 0.626163 1_1:+77904424 None:intergenic
TGTACAGCAGTATTAACTAC+CGG 0.627022 1_1:-77904418 Msa0045910:CDS
ATGAATACTTCGGTAGTGGA+GGG 0.627136 1_1:-77902186 Msa0045910:CDS
GTGACAAGTTATACAGAGGA+AGG 0.627621 1_1:-77903319 Msa0045910:intron
AAATCTGAACCAAGTCATGA+GGG 0.627722 1_1:-77904601 Msa0045910:CDS
TAGAAGATCACCATTATACA+GGG 0.629026 1_1:-77902443 Msa0045910:CDS
TTTCATCTAAATGCTGAAGA+CGG 0.629128 1_1:-77902022 Msa0045910:CDS
GTTCTTTGCTTATGCCGAAG+CGG 0.631164 1_1:-77905590 Msa0045910:CDS
ACCAGTGGAGAAAGGAGTGG+TGG 0.632899 1_1:-77903900 Msa0045910:CDS
GGCGAAAGACATAGATTACG+TGG 0.633289 1_1:+77904907 None:intergenic
GACCAGTTAATGTTTCGCAA+GGG 0.634373 1_1:-77903688 Msa0045910:CDS
AGATGTTCTATGTGCTGATG+AGG 0.634848 1_1:-77903573 Msa0045910:CDS
AAGAAGCTTGAAGTGAAGGA+GGG 0.635303 1_1:+77905789 None:intergenic
TGAACCTATAAACGGGTGGG+TGG 0.636463 1_1:-77901458 Msa0045910:three_prime_UTR
TAATAGTAGATGTATTGGAG+GGG 0.638418 1_1:-77902770 Msa0045910:CDS
TTATCCCACTTCATCTCGTG+TGG 0.638559 1_1:-77903867 Msa0045910:CDS
AGAGGAAGAGTTAATAGCCG+AGG 0.639606 1_1:-77903066 Msa0045910:CDS
CAATGGTGAAGGAAATGGTG+AGG 0.642534 1_1:-77902131 Msa0045910:CDS
GCATCACCAGCAGTAGCTGT+CGG 0.643723 1_1:+77904796 None:intergenic
TAAGCTAAAGCAATGCAGCA+AGG 0.643999 1_1:+77901653 None:intergenic
ATATCCGAACTTGTAACAGA+CGG 0.645643 1_1:+77905315 None:intergenic
TCCACCACACGAGATGAAGT+GGG 0.646428 1_1:+77903863 None:intergenic
GTGTGCCAATCAAGAAAAGG+AGG 0.646569 1_1:-77905952 Msa0045910:five_prime_UTR
ACCTAGAAGAACAAGAAACA+TGG 0.647178 1_1:-77901888 Msa0045910:CDS
GAAGATAATTTCAGGCATGG+TGG 0.649167 1_1:-77901857 Msa0045910:CDS
CAAAATCACCCATCAGATCG+AGG 0.651523 1_1:-77902558 Msa0045910:CDS
AGGATGGTTAACATTAACAA+TGG 0.652887 1_1:-77902148 Msa0045910:CDS
GAGGGACATTGACTCTGCAA+GGG 0.656182 1_1:-77902320 Msa0045910:CDS
TCATTATCAGATCGATCTCG+GGG 0.657381 1_1:+77902211 None:intergenic
ACCATCCTACCGGAATGCAT+AGG 0.657514 1_1:+77902163 None:intergenic
ATTCAAATGAATGAGAAACC+TGG 0.658290 1_1:-77903785 Msa0045910:CDS
ACTGGAACCTTCCAAAGTGG+AGG 0.660298 1_1:-77903981 Msa0045910:CDS
ATAACCAAAGATGTTACTAA+CGG 0.660450 1_1:-77903473 Msa0045910:CDS
GCGTGTTTGATTTACAGACA+CGG 0.660939 1_1:+77904999 None:intergenic
CGGACAGCAGTTTAAATGTG+CGG 0.662176 1_1:-77904932 Msa0045910:CDS
TGTGTGCAAGAGTCGATGGA+TGG 0.662221 1_1:-77903740 Msa0045910:CDS
GTTCAGACTTAGGTGGCATG+AGG 0.663487 1_1:-77902744 Msa0045910:CDS
TGACAGACCTTGGATGACCA+TGG 0.667016 1_1:+77902296 None:intergenic
GAAGTTGCCGATGAACATGA+TGG 0.670129 1_1:-77904223 Msa0045910:CDS
GTGCACCTATCAAGAAAAGG+AGG 0.670530 1_1:-77905814 Msa0045910:five_prime_UTR
AAGGAGACCGAATCAAAGGA+GGG 0.673998 1_1:+77905927 None:intergenic
GGAGGTCTGAAAGAACGCAC+AGG 0.674972 1_1:+77902079 None:intergenic
AATGGACATCTCCTAGAAGG+AGG 0.675530 1_1:-77902519 Msa0045910:CDS
TCAGTTTCTTCCGTACGAGG+AGG 0.676250 1_1:+77905902 None:intergenic
GATGCACGAGACAGTGGTGT+AGG 0.679696 1_1:-77904169 Msa0045910:CDS
GAGGGCCTATGCATTCCGGT+AGG 0.679811 1_1:-77902168 Msa0045910:CDS
AGTAGTTAGTAAAGATGACG+TGG 0.680898 1_1:-77903810 Msa0045910:CDS
TCTAGCACTTAGCATTGGAG+CGG 0.685535 1_1:-77905436 Msa0045910:CDS
CCAAGAAGAAGATCTCCAGA+TGG 0.685641 1_1:-77902493 Msa0045910:CDS
AAAGGGTTGAACCAGTGATG+TGG 0.692738 1_1:+77905712 None:intergenic
AGTGAAAACAGGTCGATCAG+GGG 0.693262 1_1:+77902405 None:intergenic
CTACAGCAACAGTTACAGCA+TGG 0.693466 1_1:+77904059 None:intergenic
GAAATAGCAACTGTTACCAG+CGG 0.693730 1_1:+77904298 None:intergenic
TAAACCAGTGGAGAAAGGAG+TGG 0.694524 1_1:-77903903 Msa0045910:CDS
TAATTATGATAATAAACCAG+TGG 0.697261 1_1:-77903915 Msa0045910:CDS
AGTGGAGGATACCATATGCG+AGG 0.697835 1_1:-77903966 Msa0045910:CDS
CCTACTGATGCACGAGACAG+TGG 0.701542 1_1:-77904175 Msa0045910:CDS
TGATGATTATGAAGATGGTG+AGG 0.704434 1_1:-77904014 Msa0045910:CDS
GGGGATGGTTCAGACTTAGG+TGG 0.706692 1_1:-77902751 Msa0045910:CDS
GATGGTGACAAGTTATACAG+AGG 0.712102 1_1:-77903323 Msa0045910:CDS
CCAAGAAGGAGGTCACCAGG+AGG 0.715766 1_1:-77902844 Msa0045910:CDS
TCACTGGGGAGAGAGTGGTG+AGG 0.719867 1_1:-77902387 Msa0045910:CDS
GGTCCAAATCAACAATACCG+TGG 0.726181 1_1:-77902994 Msa0045910:CDS
CTGTCTCTTGAAAATCTGTG+GGG 0.726330 1_1:+77903138 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTGTATATTATTGATATTT+TGG - chr1_1:77901883-77901902 Msa0045910:CDS 10.0%
!! TAAATAAGTACTAAATTATT+AGG + chr1_1:77906965-77906984 None:intergenic 10.0%
!! ATAATTTAGTACTTATTTAT+TGG - chr1_1:77906966-77906985 Msa0045910:intron 10.0%
!! TTTCATTCAATCAATAAATT+CGG - chr1_1:77901187-77901206 Msa0045910:three_prime_UTR 15.0%
!! CTATTTGAAAAAAAAAACTA+GGG + chr1_1:77901227-77901246 None:intergenic 15.0%
!! TCTATTTGAAAAAAAAAACT+AGG + chr1_1:77901228-77901247 None:intergenic 15.0%
!!! TAACTTGAATATTTTTATTG+AGG - chr1_1:77902107-77902126 Msa0045910:CDS 15.0%
!! GAATACAATTCAATTAATAA+GGG + chr1_1:77905152-77905171 None:intergenic 15.0%
!! TGAATACAATTCAATTAATA+AGG + chr1_1:77905153-77905172 None:intergenic 15.0%
!! TTTAGACTTATTATTTCAAA+TGG - chr1_1:77907196-77907215 Msa0045910:five_prime_UTR 15.0%
!! TTCCAACATATGATTATATT+TGG - chr1_1:77901697-77901716 Msa0045910:three_prime_UTR 20.0%
!! AACCAAATATAATCATATGT+TGG + chr1_1:77901702-77901721 None:intergenic 20.0%
!! AACATATGATTATATTTGGT+TGG - chr1_1:77901701-77901720 Msa0045910:three_prime_UTR 20.0%
!! TTTCATAATAGTACTTAACT+TGG - chr1_1:77901780-77901799 Msa0045910:exon 20.0%
!!! TGGTGTAATTAAATTTTCAT+AGG - chr1_1:77901903-77901922 Msa0045910:CDS 20.0%
!!! ATTTCTTTTTTTCAATTACC+GGG + chr1_1:77902721-77902740 None:intergenic 20.0%
!!! GATTTCTTTTTTTCAATTAC+CGG + chr1_1:77902722-77902741 None:intergenic 20.0%
!! TAATTATGATAATAAACCAG+TGG - chr1_1:77904455-77904474 Msa0045910:CDS 20.0%
!! AAAATAGTAGTAGTATAGAT+AGG + chr1_1:77905090-77905109 None:intergenic 20.0%
!! AATGGTAGTAGTATATATAT+AGG + chr1_1:77905126-77905145 None:intergenic 20.0%
!!! AGAAATTCTAGATTGAATTT+TGG - chr1_1:77905274-77905293 Msa0045910:CDS 20.0%
!!! GAAATTCTAGATTGAATTTT+GGG - chr1_1:77905275-77905294 Msa0045910:CDS 20.0%
!!! TTGTTATTACCATTGTTATA+AGG + chr1_1:77906315-77906334 None:intergenic 20.0%
!! TGAACAAGTAAAATTTAGTT+GGG - chr1_1:77906852-77906871 Msa0045910:intron 20.0%
!!! TAAGTTGCTTTATTTTACTT+TGG + chr1_1:77907103-77907122 None:intergenic 20.0%
! AAAACCTGATAAGAAAAACA+AGG + chr1_1:77901374-77901393 None:intergenic 25.0%
! AAATATATACCGTAAATTGC+AGG + chr1_1:77901498-77901517 None:intergenic 25.0%
!!! ATTTTCCGCTTTTTCTTTAT+AGG - chr1_1:77901548-77901567 Msa0045910:three_prime_UTR 25.0%
! CTAAACCTATAAAGAAAAAG+CGG + chr1_1:77901556-77901575 None:intergenic 25.0%
! AAAAAATAAAACCCATTGAG+GGG + chr1_1:77901646-77901665 None:intergenic 25.0%
! GAAAAAATAAAACCCATTGA+GGG + chr1_1:77901647-77901666 None:intergenic 25.0%
! AGAAAAAATAAAACCCATTG+AGG + chr1_1:77901648-77901667 None:intergenic 25.0%
!!! TGGTAAAGTTTGTTTTTTGT+TGG - chr1_1:77901721-77901740 Msa0045910:three_prime_UTR 25.0%
!!! GGTAAAGTTTGTTTTTTGTT+GGG - chr1_1:77901722-77901741 Msa0045910:three_prime_UTR 25.0%
!!! ATTTAGAGTGGATTTTTTGT+CGG - chr1_1:77901747-77901766 Msa0045910:three_prime_UTR 25.0%
!!! GTTTGTTTTGTTTTGATCAA+TGG - chr1_1:77901928-77901947 Msa0045910:CDS 25.0%
!!! TTGTTTTGATCAATGGTTTA+AGG - chr1_1:77901935-77901954 Msa0045910:CDS 25.0%
! AAGAATAGTTTATTCGATAC+AGG - chr1_1:77902074-77902093 Msa0045910:CDS 25.0%
! CAAAATAGAACAAATTGTCA+TGG + chr1_1:77902322-77902341 None:intergenic 25.0%
!!! CATGACAATTTGTTCTATTT+TGG - chr1_1:77902320-77902339 Msa0045910:CDS 25.0%
! ATTAGAACTATCTTTAAGCA+AGG - chr1_1:77903120-77903139 Msa0045910:CDS 25.0%
!!! AATAGAAGTTTTAACAGAAC+TGG + chr1_1:77903272-77903291 None:intergenic 25.0%
! TCTGTTAAAACTTCTATTGA+TGG - chr1_1:77903274-77903293 Msa0045910:intron 25.0%
! CTGTTAAAACTTCTATTGAT+GGG - chr1_1:77903275-77903294 Msa0045910:intron 25.0%
! GTATCTGTTAAACTAAATTC+AGG - chr1_1:77903520-77903539 Msa0045910:CDS 25.0%
!!! TTTTTCAAGTTCTCATCATA+CGG + chr1_1:77903634-77903653 None:intergenic 25.0%
!!! TTGACCTACTATATTTTTAC+CGG + chr1_1:77903974-77903993 None:intergenic 25.0%
! TAAAAATATAGTAGGTCAAC+TGG - chr1_1:77903975-77903994 Msa0045910:CDS 25.0%
!! TTTTTATCAATGACTTTACC+AGG + chr1_1:77904606-77904625 None:intergenic 25.0%
! ATAACCAAAGATGTTACTAA+CGG - chr1_1:77904897-77904916 Msa0045910:CDS 25.0%
! TTCAATTAATAAGGGCAAAA+TGG + chr1_1:77905144-77905163 None:intergenic 25.0%
!! ATTCAATCTAGAATTTCTAG+TGG + chr1_1:77905272-77905291 None:intergenic 25.0%
!! TATTCTGGTGAATTTTACAA+TGG - chr1_1:77905355-77905374 Msa0045910:CDS 25.0%
! ATGATTCATATGTTAATGGT+CGG - chr1_1:77905464-77905483 Msa0045910:CDS 25.0%
!! GATAATGATGATGAATACTT+CGG - chr1_1:77906174-77906193 Msa0045910:five_prime_UTR 25.0%
! TTATTACCATTGTTATAAGG+AGG + chr1_1:77906312-77906331 None:intergenic 25.0%
! AACAATGGTAATAACAATGT+TGG - chr1_1:77906318-77906337 Msa0045910:five_prime_UTR 25.0%
! TGGAAAAAAAAATGAAGTTC+TGG - chr1_1:77906755-77906774 Msa0045910:intron 25.0%
! CTGAACAAGTAAAATTTAGT+TGG - chr1_1:77906851-77906870 Msa0045910:intron 25.0%
! AGTACTAAATTATTAGGAAC+AGG + chr1_1:77906959-77906978 None:intergenic 25.0%
! TTGAATGATTAAATGTTGGT+AGG + chr1_1:77907022-77907041 None:intergenic 25.0%
! TTGGTTGAATGATTAAATGT+TGG + chr1_1:77907026-77907045 None:intergenic 25.0%
! CAAGTCATAACAATGATAAT+CGG + chr1_1:77907049-77907068 None:intergenic 25.0%
!!! ACAACCTTGTTTTTCTTATC+AGG - chr1_1:77901367-77901386 Msa0045910:three_prime_UTR 30.0%
AAAGCGGAAAATAATGTGTA+GGG + chr1_1:77901540-77901559 None:intergenic 30.0%
AAAAGCGGAAAATAATGTGT+AGG + chr1_1:77901541-77901560 None:intergenic 30.0%
ACAGAAAACTAAGAATCAAG+CGG + chr1_1:77901615-77901634 None:intergenic 30.0%
!! TGTTTTTAAATCCCCTCAAT+GGG - chr1_1:77901632-77901651 Msa0045910:three_prime_UTR 30.0%
! TTTTGTTGGGTAATTTAGAG+TGG - chr1_1:77901735-77901754 Msa0045910:three_prime_UTR 30.0%
! TTTTGATCAATGGTTTAAGG+TGG - chr1_1:77901938-77901957 Msa0045910:CDS 30.0%
!!! CTTTACATGTTTTGTTTTGC+AGG - chr1_1:77901968-77901987 Msa0045910:CDS 30.0%
TAGCTGTAAATCAATCAGAA+AGG + chr1_1:77902260-77902279 None:intergenic 30.0%
TTGATCTTATATTGACAGAG+TGG - chr1_1:77902354-77902373 Msa0045910:CDS 30.0%
TGATCTTATATTGACAGAGT+GGG - chr1_1:77902355-77902374 Msa0045910:CDS 30.0%
! CATGTCAATATTGGTAACAT+CGG + chr1_1:77902750-77902769 None:intergenic 30.0%
! TTTTTGCACCATGTCAATAT+TGG + chr1_1:77902759-77902778 None:intergenic 30.0%
TATTCACAACATCCAAAGAA+GGG + chr1_1:77902817-77902836 None:intergenic 30.0%
GAAGGTAATGAGAAAAATTC+AGG - chr1_1:77902860-77902879 Msa0045910:CDS 30.0%
AGGATTTGCCTTAATTGTTT+GGG + chr1_1:77902888-77902907 None:intergenic 30.0%
AAAGATAAAGTAGTACTTCC+AGG + chr1_1:77903013-77903032 None:intergenic 30.0%
CAATAAGATACAACCCAATA+TGG - chr1_1:77903078-77903097 Msa0045910:CDS 30.0%
!! AAAGATAGTTCTAATGAGAC+AGG + chr1_1:77903115-77903134 None:intergenic 30.0%
AGTTTAACAGATACTCTAGA+GGG + chr1_1:77903514-77903533 None:intergenic 30.0%
TAGTTTAACAGATACTCTAG+AGG + chr1_1:77903515-77903534 None:intergenic 30.0%
ATGCAAATACTTCTAGTGTT+AGG - chr1_1:77903593-77903612 Msa0045910:CDS 30.0%
AAATACTTCTAGTGTTAGGT+TGG - chr1_1:77903597-77903616 Msa0045910:CDS 30.0%
TATCTAATGAACCTAGAAGA+CGG + chr1_1:77903678-77903697 None:intergenic 30.0%
AATGTAGAATCGACATTAGA+TGG + chr1_1:77903745-77903764 None:intergenic 30.0%
GATGAACATAATGACATTTG+AGG + chr1_1:77903856-77903875 None:intergenic 30.0%
ACTACCGGTAAAAATATAGT+AGG - chr1_1:77903967-77903986 Msa0045910:CDS 30.0%
!! AGTTGCTATTTCTAATCCTA+TGG - chr1_1:77904083-77904102 Msa0045910:CDS 30.0%
ATAGAAGAATATTTCAAGCC+AGG + chr1_1:77904114-77904133 None:intergenic 30.0%
! ATGTTGGAAGATGATTCTTT+TGG - chr1_1:77904264-77904283 Msa0045910:CDS 30.0%
GAAGATGATGATTATGAAGA+TGG - chr1_1:77904351-77904370 Msa0045910:CDS 30.0%
TTATCATAATTACCTGAGTC+AGG + chr1_1:77904447-77904466 None:intergenic 30.0%
CTTTACTAACTACTTCATTG+TGG + chr1_1:77904554-77904573 None:intergenic 30.0%
ATTCAAATGAATGAGAAACC+TGG - chr1_1:77904585-77904604 Msa0045910:CDS 30.0%
!! AATAATTGTCTCTGAAACTC+AGG - chr1_1:77904728-77904747 Msa0045910:CDS 30.0%
!!! AAATAGGCCTAGTTTTACTA+GGG + chr1_1:77904974-77904993 None:intergenic 30.0%
GTAGTATAGATAGGACTAAA+AGG + chr1_1:77905081-77905100 None:intergenic 30.0%
CCATTAACATATGAATCATC+AGG + chr1_1:77905463-77905482 None:intergenic 30.0%
CCTGATGATTCATATGTTAA+TGG - chr1_1:77905460-77905479 Msa0045910:CDS 30.0%
ATATATGAGCCATCATTCAA+TGG + chr1_1:77905502-77905521 None:intergenic 30.0%
AGTCCTAATAGTAGATGTAT+TGG - chr1_1:77905595-77905614 Msa0045910:CDS 30.0%
CTAATAGTAGATGTATTGGA+GGG - chr1_1:77905599-77905618 Msa0045910:CDS 30.0%
TAATAGTAGATGTATTGGAG+GGG - chr1_1:77905600-77905619 Msa0045910:CDS 30.0%
CATAGTGAGAAATTTATGAG+AGG - chr1_1:77905649-77905668 Msa0045910:five_prime_UTR 30.0%
ATAGAAGATCACCATTATAC+AGG - chr1_1:77905926-77905945 Msa0045910:five_prime_UTR 30.0%
TAGAAGATCACCATTATACA+GGG - chr1_1:77905927-77905946 Msa0045910:five_prime_UTR 30.0%
CTGATTAAAATTCTACCAGA+TGG + chr1_1:77906114-77906133 None:intergenic 30.0%
AGGATGGTTAACATTAACAA+TGG - chr1_1:77906222-77906241 Msa0045910:five_prime_UTR 30.0%
GTTAACATTAACAATGGTGA+AGG - chr1_1:77906228-77906247 Msa0045910:five_prime_UTR 30.0%
ATTAACAATGGTGAAGGAAA+TGG - chr1_1:77906234-77906253 Msa0045910:five_prime_UTR 30.0%
TTTCATCTAAATGCTGAAGA+CGG - chr1_1:77906348-77906367 Msa0045910:five_prime_UTR 30.0%
GAACAGAATCTATAATGTCT+AGG + chr1_1:77906375-77906394 None:intergenic 30.0%
ATGAGCAAGAAGATAATTTC+AGG - chr1_1:77906505-77906524 Msa0045910:intron 30.0%
!!! TTTTTTTCCACCACTTAGAA+TGG + chr1_1:77906745-77906764 None:intergenic 30.0%
! GTTTCTAGATATAGCAAGTT+TGG + chr1_1:77906892-77906911 None:intergenic 30.0%
CTAGAAACTGAACCTATAAA+CGG - chr1_1:77906904-77906923 Msa0045910:intron 30.0%
TAGAAACTGAACCTATAAAC+GGG - chr1_1:77906905-77906924 Msa0045910:intron 30.0%
TCATAACAATGATAATCGGT+TGG + chr1_1:77907045-77907064 None:intergenic 30.0%
CGATTATCATTGTTATGACT+TGG - chr1_1:77907047-77907066 Msa0045910:five_prime_UTR 30.0%
TGGTGTGTCTATTCATTTAA+GGG + chr1_1:77907083-77907102 None:intergenic 30.0%
TTGGTGTGTCTATTCATTTA+AGG + chr1_1:77907084-77907103 None:intergenic 30.0%
! ATGTGAGAAAAAGGGTTTTG+GGG + chr1_1:77901341-77901360 None:intergenic 35.0%
! GATGTGAGAAAAAGGGTTTT+GGG + chr1_1:77901342-77901361 None:intergenic 35.0%
! TGATGTGAGAAAAAGGGTTT+TGG + chr1_1:77901343-77901362 None:intergenic 35.0%
GTGTTGTGATGTGAGAAAAA+GGG + chr1_1:77901349-77901368 None:intergenic 35.0%
TGTGTTGTGATGTGAGAAAA+AGG + chr1_1:77901350-77901369 None:intergenic 35.0%
TGACGATGAAAAACAGGAAT+AGG + chr1_1:77901418-77901437 None:intergenic 35.0%
AGATCTTGACGATGAAAAAC+AGG + chr1_1:77901424-77901443 None:intergenic 35.0%
AAGCGGAAAATAATGTGTAG+GGG + chr1_1:77901539-77901558 None:intergenic 35.0%
!!! CTGTTTTTAAATCCCCTCAA+TGG - chr1_1:77901631-77901650 Msa0045910:three_prime_UTR 35.0%
TGTTAATTGTTGTGATCACG+TGG - chr1_1:77901842-77901861 Msa0045910:CDS 35.0%
!! ATCACGTGGTTGATTGATTT+TGG - chr1_1:77901856-77901875 Msa0045910:CDS 35.0%
CTCACTTCAAATAAAGTAGC+GGG + chr1_1:77901996-77902015 None:intergenic 35.0%
CCTCACTTCAAATAAAGTAG+CGG + chr1_1:77901997-77902016 None:intergenic 35.0%
! CTTTATTTGAAGTGAGGCTA+AGG - chr1_1:77902000-77902019 Msa0045910:CDS 35.0%
AGCGTTCTTATAGCAAAGAT+TGG - chr1_1:77902196-77902215 Msa0045910:CDS 35.0%
AGGAAATAAACACCTCTTCA+CGG + chr1_1:77902240-77902259 None:intergenic 35.0%
CAGTTTAGTGATTTAGTTGC+AGG - chr1_1:77902396-77902415 Msa0045910:CDS 35.0%
CTATCAAATGTCAGTATTGC+AGG - chr1_1:77902534-77902553 Msa0045910:CDS 35.0%
AAAAAGTCATGCTTTGCGAA+AGG - chr1_1:77902626-77902645 Msa0045910:CDS 35.0%
CGATGTTACCAATATTGACA+TGG - chr1_1:77902748-77902767 Msa0045910:CDS 35.0%
CTATTCACAACATCCAAAGA+AGG + chr1_1:77902818-77902837 None:intergenic 35.0%
TTTGGATGTTGTGAATAGCA+AGG - chr1_1:77902820-77902839 Msa0045910:CDS 35.0%
TGTTGTGAATAGCAAGGAAA+AGG - chr1_1:77902826-77902845 Msa0045910:CDS 35.0%
TTCAGGATCCCAAACAATTA+AGG - chr1_1:77902877-77902896 Msa0045910:CDS 35.0%
CAGGATTTGCCTTAATTGTT+TGG + chr1_1:77902889-77902908 None:intergenic 35.0%
ATATCCGAACTTGTAACAGA+CGG + chr1_1:77903058-77903077 None:intergenic 35.0%
ATACAACCCAATATGGAGAA+AGG - chr1_1:77903085-77903104 Msa0045910:CDS 35.0%
!! GTCACTATCACTTTTAGCAT+CGG + chr1_1:77903173-77903192 None:intergenic 35.0%
TGAATACTACAATGGATGCA+TGG - chr1_1:77903230-77903249 Msa0045910:intron 35.0%
GAATACTACAATGGATGCAT+GGG - chr1_1:77903231-77903250 Msa0045910:intron 35.0%
AATATTACTCACAGTGCACT+TGG - chr1_1:77903301-77903320 Msa0045910:intron 35.0%
AAAGCTTTCGTTACTTCAAC+TGG - chr1_1:77903409-77903428 Msa0045910:CDS 35.0%
TCGACATACTTCTGAACAAA+AGG + chr1_1:77903487-77903506 None:intergenic 35.0%
!! TTTTGTTCAGAAGTATGTCG+AGG - chr1_1:77903486-77903505 Msa0045910:CDS 35.0%
ATCTAATGAACCTAGAAGAC+GGG + chr1_1:77903677-77903696 None:intergenic 35.0%
TAAATCTGAACCAAGTCATG+AGG - chr1_1:77903768-77903787 Msa0045910:CDS 35.0%
AAATCTGAACCAAGTCATGA+GGG - chr1_1:77903769-77903788 Msa0045910:CDS 35.0%
AGTACCACAACAAATCAGTT+GGG - chr1_1:77903820-77903839 Msa0045910:CDS 35.0%
!! TTTACCCAACTGATTTGTTG+TGG + chr1_1:77903827-77903846 None:intergenic 35.0%
TGTGTTGAATTCAACATGAC+TGG + chr1_1:77903892-77903911 None:intergenic 35.0%
! TTCAACACAAGTTTTTGCAG+AGG - chr1_1:77903903-77903922 Msa0045910:CDS 35.0%
TGTACAGCAGTATTAACTAC+CGG - chr1_1:77903952-77903971 Msa0045910:CDS 35.0%
AACCTTGTCAACTGATATGT+TGG - chr1_1:77904248-77904267 Msa0045910:CDS 35.0%
TTCCAACATATCAGTTGACA+AGG + chr1_1:77904253-77904272 None:intergenic 35.0%
!!! GAAGATGATTCTTTTGGTTC+TGG - chr1_1:77904270-77904289 Msa0045910:CDS 35.0%
! AGTTACAGCATGGTTTTCAT+CGG + chr1_1:77904304-77904323 None:intergenic 35.0%
TGATGATTATGAAGATGGTG+AGG - chr1_1:77904356-77904375 Msa0045910:CDS 35.0%
GATAATAAACCAGTGGAGAA+AGG - chr1_1:77904462-77904481 Msa0045910:CDS 35.0%
AGTAGTTAGTAAAGATGACG+TGG - chr1_1:77904560-77904579 Msa0045910:CDS 35.0%
ACTACCGTTAGTAACATCTT+TGG + chr1_1:77904904-77904923 None:intergenic 35.0%
GTTACTAACGGTAGTAATCA+AGG - chr1_1:77904909-77904928 Msa0045910:CDS 35.0%
!!! AATAGGCCTAGTTTTACTAG+GGG + chr1_1:77904973-77904992 None:intergenic 35.0%
!!! GAAATAGGCCTAGTTTTACT+AGG + chr1_1:77904975-77904994 None:intergenic 35.0%
AGTAAAACTAGGCCTATTTC+AGG - chr1_1:77904975-77904994 Msa0045910:CDS 35.0%
AGGGATGAAGTTTACATTGA+TGG - chr1_1:77905208-77905227 Msa0045910:CDS 35.0%
TCTGTCTCTTGAAAATCTGT+GGG + chr1_1:77905236-77905255 None:intergenic 35.0%
TCATATGTTAATGGTCGGTT+AGG - chr1_1:77905469-77905488 Msa0045910:CDS 35.0%
CATCTACTATTAGGACTAAC+AGG + chr1_1:77905592-77905611 None:intergenic 35.0%
CCTCCAATACATCTACTATT+AGG + chr1_1:77905601-77905620 None:intergenic 35.0%
CCTAATAGTAGATGTATTGG+AGG - chr1_1:77905598-77905617 Msa0045910:CDS 35.0%
ATCCATTCCCTCAAATTGTT+GGG + chr1_1:77905713-77905732 None:intergenic 35.0%
! ATTTTTCTTCCATGCAGAGA+AGG - chr1_1:77905767-77905786 Msa0045910:five_prime_UTR 35.0%
! TTTTTCTTCCATGCAGAGAA+GGG - chr1_1:77905768-77905787 Msa0045910:five_prime_UTR 35.0%
GATCTTCTATGAGTGATTTC+AGG + chr1_1:77905916-77905935 None:intergenic 35.0%
ATTCTGTCAACCCTGTATAA+TGG + chr1_1:77905940-77905959 None:intergenic 35.0%
GAAGGTCGTGATATAAATTG+AGG + chr1_1:77906021-77906040 None:intergenic 35.0%
ACGACCTTCTAATGATATGA+GGG - chr1_1:77906032-77906051 Msa0045910:intron 35.0%
ATGTCCCTCATATCATTAGA+AGG + chr1_1:77906039-77906058 None:intergenic 35.0%
GTTAATGTTAACCATCCTAC+CGG + chr1_1:77906220-77906239 None:intergenic 35.0%
TTCAGACCTCCTTATAACAA+TGG - chr1_1:77906303-77906322 Msa0045910:five_prime_UTR 35.0%
! GATTCAGATTTTCATGAGAG+AGG - chr1_1:77906399-77906418 Msa0045910:intron 35.0%
GACTTTGATAGAAGGATCAA+GGG - chr1_1:77906441-77906460 Msa0045910:intron 35.0%
ATGTTTCTTGTTCTTCTAGG+TGG + chr1_1:77906483-77906502 None:intergenic 35.0%
ACCTAGAAGAACAAGAAACA+TGG - chr1_1:77906482-77906501 Msa0045910:intron 35.0%
TCCATGTTTCTTGTTCTTCT+AGG + chr1_1:77906486-77906505 None:intergenic 35.0%
CAAGAAGATAATTTCAGGCA+TGG - chr1_1:77906510-77906529 Msa0045910:intron 35.0%
ATGATATTTCCAGAGTGAAG+AGG - chr1_1:77906562-77906581 Msa0045910:intron 35.0%
! AAATCTTTTCCTCTTCACTC+TGG + chr1_1:77906574-77906593 None:intergenic 35.0%
AGAAGACTATTCGGATTAAG+GGG + chr1_1:77906607-77906626 None:intergenic 35.0%
CAGAAGACTATTCGGATTAA+GGG + chr1_1:77906608-77906627 None:intergenic 35.0%
TTAGCTTAAGCCATTCTAAG+TGG - chr1_1:77906732-77906751 Msa0045910:intron 35.0%
ATTTAGTTGGGACTTCAGTA+TGG - chr1_1:77906864-77906883 Msa0045910:intron 35.0%
TTTAGTTGGGACTTCAGTAT+GGG - chr1_1:77906865-77906884 Msa0045910:intron 35.0%
!!! TGTTATGACTTGGTCAGTTT+TGG - chr1_1:77907057-77907076 Msa0045910:five_prime_UTR 35.0%
TGCAGAAAAGTAAACAGATG+TGG - chr1_1:77907135-77907154 Msa0045910:five_prime_UTR 35.0%
! TAGATCTGTTTCTTGCCTTG+TGG - chr1_1:77901573-77901592 Msa0045910:three_prime_UTR 40.0%
! AGATCTGTTTCTTGCCTTGT+GGG - chr1_1:77901574-77901593 Msa0045910:three_prime_UTR 40.0%
! CCGCTACTTTATTTGAAGTG+AGG - chr1_1:77901994-77902013 Msa0045910:CDS 40.0%
GAAAACTCAAGCACTTCTCA+AGG - chr1_1:77902504-77902523 Msa0045910:CDS 40.0%
AAGAAGCTTGAAGTGAAGGA+GGG + chr1_1:77902584-77902603 None:intergenic 40.0%
AAAGAAGCTTGAAGTGAAGG+AGG + chr1_1:77902585-77902604 None:intergenic 40.0%
TCCTTCACTTCAAGCTTCTT+TGG - chr1_1:77902584-77902603 Msa0045910:CDS 40.0%
TCCAAAGAAGCTTGAAGTGA+AGG + chr1_1:77902588-77902607 None:intergenic 40.0%
! ACTTCAAGCTTCTTTGGAAG+AGG - chr1_1:77902590-77902609 Msa0045910:CDS 40.0%
ATCTGATACCATTGGAAACC+CGG - chr1_1:77902700-77902719 Msa0045910:CDS 40.0%
TTCAATTACCGGGTTTCCAA+TGG + chr1_1:77902711-77902730 None:intergenic 40.0%
GAAAAGGTGATGCTCAATGA+AGG - chr1_1:77902842-77902861 Msa0045910:CDS 40.0%
GGCAAATCCTGAACTCTTAT+TGG - chr1_1:77902898-77902917 Msa0045910:CDS 40.0%
TTTGCAGCCAATAAGAGTTC+AGG + chr1_1:77902908-77902927 None:intergenic 40.0%
! CTCTTATTGGCTGCAAAAGA+TGG - chr1_1:77902911-77902930 Msa0045910:CDS 40.0%
GTAGTACTTCCAGGAACTAT+AGG + chr1_1:77903004-77903023 None:intergenic 40.0%
GTTTCCGTCTGTTACAAGTT+CGG - chr1_1:77903051-77903070 Msa0045910:CDS 40.0%
GGTTCTCCTTTCTCCATATT+GGG + chr1_1:77903094-77903113 None:intergenic 40.0%
AGGTTCTCCTTTCTCCATAT+TGG + chr1_1:77903095-77903114 None:intergenic 40.0%
CTGGGATCTGAATACTACAA+TGG - chr1_1:77903222-77903241 Msa0045910:intron 40.0%
! GCGTGTTTGATTTACAGACA+CGG + chr1_1:77903374-77903393 None:intergenic 40.0%
! GTTACTTCAACTGGTCTGTA+CGG - chr1_1:77903418-77903437 Msa0045910:CDS 40.0%
GGACTTGGCAAACTAACAAT+AGG + chr1_1:77903556-77903575 None:intergenic 40.0%
AAGTTCTCATCATACGGTTC+TGG + chr1_1:77903628-77903647 None:intergenic 40.0%
GAGTACCACAACAAATCAGT+TGG - chr1_1:77903819-77903838 Msa0045910:CDS 40.0%
! AACACAAGTTTTTGCAGAGG+CGG - chr1_1:77903906-77903925 Msa0045910:CDS 40.0%
GTTAATACTGCTGTACACAC+AGG + chr1_1:77903949-77903968 None:intergenic 40.0%
AGTTTCCTCAAATTCTGAGC+AGG - chr1_1:77904047-77904066 Msa0045910:CDS 40.0%
GAAATAGCAACTGTTACCAG+CGG + chr1_1:77904075-77904094 None:intergenic 40.0%
TCTAATCCTATGGTTACTCC+TGG - chr1_1:77904093-77904112 Msa0045910:CDS 40.0%
TTCATCGGCAACTTCTTTCT+TGG + chr1_1:77904142-77904161 None:intergenic 40.0%
TCTGCAACCATCATGTTCAT+CGG + chr1_1:77904157-77904176 None:intergenic 40.0%
TGTTTCTCTTACCTCGCATA+TGG + chr1_1:77904418-77904437 None:intergenic 40.0%
AGACCAGTTAATGTTTCGCA+AGG - chr1_1:77904681-77904700 Msa0045910:CDS 40.0%
GACCAGTTAATGTTTCGCAA+GGG - chr1_1:77904682-77904701 Msa0045910:CDS 40.0%
TTCCCTTGCGAAACATTAAC+TGG + chr1_1:77904687-77904706 None:intergenic 40.0%
TATCACATGTCTTCCATCAG+TGG + chr1_1:77904778-77904797 None:intergenic 40.0%
! AGATGTTCTATGTGCTGATG+AGG - chr1_1:77904797-77904816 Msa0045910:CDS 40.0%
! TGACTCAGATTTTCCGAAGA+TGG - chr1_1:77904851-77904870 Msa0045910:CDS 40.0%
! TCAGATTTTCCGAAGATGGA+AGG - chr1_1:77904855-77904874 Msa0045910:CDS 40.0%
TTAGCAGATCCTTCCATCTT+CGG + chr1_1:77904867-77904886 None:intergenic 40.0%
GTATTTCCTGACACACTTGA+TGG - chr1_1:77905029-77905048 Msa0045910:CDS 40.0%
GATGGTGACAAGTTATACAG+AGG - chr1_1:77905047-77905066 Msa0045910:CDS 40.0%
GTGACAAGTTATACAGAGGA+AGG - chr1_1:77905051-77905070 Msa0045910:CDS 40.0%
CTGAAAATCAAAGCAGGGAA+GGG + chr1_1:77905190-77905209 None:intergenic 40.0%
!! CTTCCCTGCTTTGATTTTCA+GGG - chr1_1:77905189-77905208 Msa0045910:CDS 40.0%
CATCCCTGAAAATCAAAGCA+GGG + chr1_1:77905195-77905214 None:intergenic 40.0%
TCATCCCTGAAAATCAAAGC+AGG + chr1_1:77905196-77905215 None:intergenic 40.0%
CTGTCTCTTGAAAATCTGTG+GGG + chr1_1:77905235-77905254 None:intergenic 40.0%
GTCTGTCTCTTGAAAATCTG+TGG + chr1_1:77905237-77905256 None:intergenic 40.0%
! TCTAGATTGAATTTTGGGCG+TGG - chr1_1:77905280-77905299 Msa0045910:CDS 40.0%
GAATCTGAGCGTGAATATTC+TGG - chr1_1:77905340-77905359 Msa0045910:CDS 40.0%
!!! AATATTTTGACCTTGCGCCA+CGG + chr1_1:77905396-77905415 None:intergenic 40.0%
TGCTATTGCTGATACTGATC+TGG - chr1_1:77905420-77905439 Msa0045910:CDS 40.0%
! GATCTGGAGTACAATAATGC+TGG - chr1_1:77905436-77905455 Msa0045910:CDS 40.0%
GGTAGAAAGCCATTGAATGA+TGG - chr1_1:77905490-77905509 Msa0045910:CDS 40.0%
GCTCATATATTGCACCAAGA+AGG - chr1_1:77905512-77905531 Msa0045910:CDS 40.0%
CATATATTGCACCAAGAAGG+AGG - chr1_1:77905515-77905534 Msa0045910:CDS 40.0%
AGGAAGAGATGGCATTCAAA+TGG - chr1_1:77905549-77905568 Msa0045910:CDS 40.0%
GGAAGAGATGGCATTCAAAT+GGG - chr1_1:77905550-77905569 Msa0045910:CDS 40.0%
ATGGCATTCAAATGGGTCAT+AGG - chr1_1:77905557-77905576 Msa0045910:CDS 40.0%
TCCATTCCCTCAAATTGTTG+GGG + chr1_1:77905712-77905731 None:intergenic 40.0%
CATCCATTCCCTCAAATTGT+TGG + chr1_1:77905714-77905733 None:intergenic 40.0%
CAACAATTTGAGGGAATGGA+TGG - chr1_1:77905712-77905731 Msa0045910:five_prime_UTR 40.0%
AATTTGAGGGAATGGATGGT+CGG - chr1_1:77905716-77905735 Msa0045910:five_prime_UTR 40.0%
! TTTTCTTCCATGCAGAGAAG+GGG - chr1_1:77905769-77905788 Msa0045910:five_prime_UTR 40.0%
ATCTGGAGATCTTCTTCTTG+GGG + chr1_1:77905878-77905897 None:intergenic 40.0%
CATCTGGAGATCTTCTTCTT+GGG + chr1_1:77905879-77905898 None:intergenic 40.0%
! AGAAGATCTCCAGATGGTTT+TGG - chr1_1:77905883-77905902 Msa0045910:five_prime_UTR 40.0%
CACGACCTTCTAATGATATG+AGG - chr1_1:77906031-77906050 Msa0045910:intron 40.0%
CTATTGGAAATGACAGACCT+TGG + chr1_1:77906087-77906106 None:intergenic 40.0%
! CAAGGTCTGTCATTTCCAAT+AGG - chr1_1:77906085-77906104 Msa0045910:intron 40.0%
ATTTCCAATAGGAGTCCATC+TGG - chr1_1:77906096-77906115 Msa0045910:intron 40.0%
GATGATGAATACTTCGGTAG+TGG - chr1_1:77906180-77906199 Msa0045910:five_prime_UTR 40.0%
!! ATGAATACTTCGGTAGTGGA+GGG - chr1_1:77906184-77906203 Msa0045910:five_prime_UTR 40.0%
ATGAGAGAGGCAATAACTTG+AGG - chr1_1:77906412-77906431 Msa0045910:intron 40.0%
TGAGAGAGGCAATAACTTGA+GGG - chr1_1:77906413-77906432 Msa0045910:intron 40.0%
AGGCAATAACTTGAGGGAAA+GGG - chr1_1:77906419-77906438 Msa0045910:intron 40.0%
GGACTTTGATAGAAGGATCA+AGG - chr1_1:77906440-77906459 Msa0045910:intron 40.0%
TTGATAGAAGGATCAAGGGT+AGG - chr1_1:77906445-77906464 Msa0045910:intron 40.0%
ATCAAGGGTAGGAATGGAAA+TGG - chr1_1:77906456-77906475 Msa0045910:intron 40.0%
TCAAGGGTAGGAATGGAAAT+GGG - chr1_1:77906457-77906476 Msa0045910:intron 40.0%
GAAGATAATTTCAGGCATGG+TGG - chr1_1:77906513-77906532 Msa0045910:intron 40.0%
GCAGAAGACTATTCGGATTA+AGG + chr1_1:77906609-77906628 None:intergenic 40.0%
TAATCCGAATAGTCTTCTGC+TGG - chr1_1:77906609-77906628 Msa0045910:intron 40.0%
TAAGCTAAAGCAATGCAGCA+AGG + chr1_1:77906720-77906739 None:intergenic 40.0%
AAACTGAACCTATAAACGGG+TGG - chr1_1:77906908-77906927 Msa0045910:intron 40.0%
AACTGAACCTATAAACGGGT+GGG - chr1_1:77906909-77906928 Msa0045910:intron 40.0%
! TTATTGGAGTGCTTTGCTGT+TGG - chr1_1:77906982-77907001 Msa0045910:intron 40.0%
!!! CTTTGCTGTTGGTTCTTTTC+TGG - chr1_1:77906993-77907012 Msa0045910:intron 40.0%
! CTTTCTTCGCAGTTGTTTCG+TGG - chr1_1:77901296-77901315 Msa0045910:three_prime_UTR 45.0%
ATACCGTAAATTGCAGGCCA+CGG + chr1_1:77901492-77901511 None:intergenic 45.0%
! TCTTGCCTTGTGGGTTTTCT+CGG - chr1_1:77901583-77901602 Msa0045910:three_prime_UTR 45.0%
TGAAGTGAGGCTAAGGATAG+TGG - chr1_1:77902007-77902026 Msa0045910:CDS 45.0%
ATTGGAATCATGCCCATCTC+AGG - chr1_1:77902214-77902233 Msa0045910:CDS 45.0%
AGTGGGATAAAGTCCTTTGC+TGG - chr1_1:77902372-77902391 Msa0045910:CDS 45.0%
GTGGGATAAAGTCCTTTGCT+GGG - chr1_1:77902373-77902392 Msa0045910:CDS 45.0%
ATCACTAAACTGCCCAGCAA+AGG + chr1_1:77902388-77902407 None:intergenic 45.0%
CAGGTGTGCCAATCAAGAAA+AGG - chr1_1:77902415-77902434 Msa0045910:CDS 45.0%
GTGTGCCAATCAAGAAAAGG+AGG - chr1_1:77902418-77902437 Msa0045910:CDS 45.0%
! GGGTACCTCCTTTTCTTGAT+TGG + chr1_1:77902426-77902445 None:intergenic 45.0%
AAGGAGACCGAATCAAAGGA+GGG + chr1_1:77902446-77902465 None:intergenic 45.0%
AACTCAGTTTCTTCCGTACG+AGG + chr1_1:77902474-77902493 None:intergenic 45.0%
CAGGTGCACCTATCAAGAAA+AGG - chr1_1:77902553-77902572 Msa0045910:CDS 45.0%
GTGCACCTATCAAGAAAAGG+AGG - chr1_1:77902556-77902575 Msa0045910:CDS 45.0%
! GGGAACCTCCTTTTCTTGAT+AGG + chr1_1:77902564-77902583 None:intergenic 45.0%
! AGCTTCTTTGGAAGAGGCTT+CGG - chr1_1:77902596-77902615 Msa0045910:CDS 45.0%
GGAACATTCAACCACATCAC+TGG - chr1_1:77902647-77902666 Msa0045910:CDS 45.0%
AAAGGGTTGAACCAGTGATG+TGG + chr1_1:77902661-77902680 None:intergenic 45.0%
ACCCTTTCTACCAGTTCTGT+CGG - chr1_1:77902674-77902693 Msa0045910:CDS 45.0%
ATCAGATAACCCGACAGAAC+TGG + chr1_1:77902687-77902706 None:intergenic 45.0%
GTCGGGTTATCTGATACCAT+TGG - chr1_1:77902692-77902711 Msa0045910:CDS 45.0%
GTTCTTTGCTTATGCCGAAG+CGG - chr1_1:77902780-77902799 Msa0045910:CDS 45.0%
TTCTTTGCTTATGCCGAAGC+GGG - chr1_1:77902781-77902800 Msa0045910:CDS 45.0%
GGAGGAATCAAACCCTTCTT+TGG - chr1_1:77902802-77902821 Msa0045910:CDS 45.0%
GATGGTCTAGCACTTAGCAT+TGG - chr1_1:77902929-77902948 Msa0045910:CDS 45.0%
! TCTAGCACTTAGCATTGGAG+CGG - chr1_1:77902934-77902953 Msa0045910:CDS 45.0%
CAAGAGAGTCCTATAGTTCC+TGG - chr1_1:77902992-77903011 Msa0045910:CDS 45.0%
TACTCGTGTGCATTCTAGCA+GGG - chr1_1:77903195-77903214 Msa0045910:intron 45.0%
ACAATGGATGCATGGGATGA+AGG - chr1_1:77903238-77903257 Msa0045910:intron 45.0%
CAATGGATGCATGGGATGAA+GGG - chr1_1:77903239-77903258 Msa0045910:intron 45.0%
AAACAGTTTACGTGCTCGAC+TGG - chr1_1:77903328-77903347 Msa0045910:CDS 45.0%
AACAGTTTACGTGCTCGACT+GGG - chr1_1:77903329-77903348 Msa0045910:CDS 45.0%
TTTACAGACACGGCACTTGT+TGG + chr1_1:77903364-77903383 None:intergenic 45.0%
CGGACAGCAGTTTAAATGTG+CGG - chr1_1:77903438-77903457 Msa0045910:CDS 45.0%
GGCGAAAGACATAGATTACG+TGG + chr1_1:77903466-77903485 None:intergenic 45.0%
TCTTGACTACCCTCATGACT+TGG + chr1_1:77903781-77903800 None:intergenic 45.0%
!! TGTGGTACTCTCTGCTGTTT+TGG + chr1_1:77903809-77903828 None:intergenic 45.0%
TTCAAGCCAGGAGTAACCAT+AGG + chr1_1:77904102-77904121 None:intergenic 45.0%
GAAGTTGCCGATGAACATGA+TGG - chr1_1:77904147-77904166 Msa0045910:CDS 45.0%
CTACAGCAACAGTTACAGCA+TGG + chr1_1:77904314-77904333 None:intergenic 45.0%
ATGGTATCCTCCACTTTGGA+AGG + chr1_1:77904399-77904418 None:intergenic 45.0%
GCATATGGTATCCTCCACTT+TGG + chr1_1:77904403-77904422 None:intergenic 45.0%
GAAACAGAACATCCTGACTC+AGG - chr1_1:77904432-77904451 Msa0045910:CDS 45.0%
TAAACCAGTGGAGAAAGGAG+TGG - chr1_1:77904467-77904486 Msa0045910:CDS 45.0%
TTATCCCACTTCATCTCGTG+TGG - chr1_1:77904503-77904522 Msa0045910:CDS 45.0%
TTTACTAGGGGATGACGAAC+TGG + chr1_1:77904961-77904980 None:intergenic 45.0%
CGTCATCCCCTAGTAAAACT+AGG - chr1_1:77904964-77904983 Msa0045910:CDS 45.0%
TTGTCACCATCAAGTGTGTC+AGG + chr1_1:77905038-77905057 None:intergenic 45.0%
CCTGAAAATCAAAGCAGGGA+AGG + chr1_1:77905191-77905210 None:intergenic 45.0%
!! CCTTCCCTGCTTTGATTTTC+AGG - chr1_1:77905188-77905207 Msa0045910:CDS 45.0%
! TTGAATTTTGGGCGTGGTAG+AGG - chr1_1:77905286-77905305 Msa0045910:CDS 45.0%
AGAGGAAGAGTTAATAGCCG+AGG - chr1_1:77905304-77905323 Msa0045910:CDS 45.0%
GGTCCAAATCAACAATACCG+TGG - chr1_1:77905376-77905395 Msa0045910:CDS 45.0%
AGTAGATGTATTGGAGGGGA+TGG - chr1_1:77905604-77905623 Msa0045910:CDS 45.0%
TACACGTCCCCAACAATTTG+AGG - chr1_1:77905702-77905721 Msa0045910:five_prime_UTR 45.0%
ACACGTCCCCAACAATTTGA+GGG - chr1_1:77905703-77905722 Msa0045910:five_prime_UTR 45.0%
TCCCCAACAATTTGAGGGAA+TGG - chr1_1:77905708-77905727 Msa0045910:five_prime_UTR 45.0%
!! ATGGATGGTCGGTTTTCAAG+AGG - chr1_1:77905727-77905746 Msa0045910:five_prime_UTR 45.0%
!! GGTTTTCAAGAGGAAGAGGA+CGG - chr1_1:77905737-77905756 Msa0045910:five_prime_UTR 45.0%
!! GTTTTCAAGAGGAAGAGGAC+GGG - chr1_1:77905738-77905757 Msa0045910:five_prime_UTR 45.0%
!! TTTTCAAGAGGAAGAGGACG+GGG - chr1_1:77905739-77905758 Msa0045910:five_prime_UTR 45.0%
CAAAATCACCCATCAGATCG+AGG - chr1_1:77905812-77905831 Msa0045910:five_prime_UTR 45.0%
TCTAGGAGATGTCCATTGAC+CGG + chr1_1:77905848-77905867 None:intergenic 45.0%
GTCAATGGACATCTCCTAGA+AGG - chr1_1:77905848-77905867 Msa0045910:five_prime_UTR 45.0%
AATGGACATCTCCTAGAAGG+AGG - chr1_1:77905851-77905870 Msa0045910:five_prime_UTR 45.0%
CCATCTGGAGATCTTCTTCT+TGG + chr1_1:77905880-77905899 None:intergenic 45.0%
CCAAGAAGAAGATCTCCAGA+TGG - chr1_1:77905877-77905896 Msa0045910:five_prime_UTR 45.0%
!!! AGATCTCCAGATGGTTTTGG+TGG - chr1_1:77905886-77905905 Msa0045910:five_prime_UTR 45.0%
AGTGAAAACAGGTCGATCAG+GGG + chr1_1:77905968-77905987 None:intergenic 45.0%
CAGTGAAAACAGGTCGATCA+GGG + chr1_1:77905969-77905988 None:intergenic 45.0%
! CTGATCGACCTGTTTTCACT+GGG - chr1_1:77905968-77905987 Msa0045910:five_prime_UTR 45.0%
! TGATCGACCTGTTTTCACTG+GGG - chr1_1:77905969-77905988 Msa0045910:five_prime_UTR 45.0%
! TCTACCAGATGGACTCCTAT+TGG + chr1_1:77906103-77906122 None:intergenic 45.0%
! GATGAATACTTCGGTAGTGG+AGG - chr1_1:77906183-77906202 Msa0045910:five_prime_UTR 45.0%
CAATGGTGAAGGAAATGGTG+AGG - chr1_1:77906239-77906258 Msa0045910:five_prime_UTR 45.0%
!! AGGAGGTTTGGTGAAAGAAG+AGG - chr1_1:77906267-77906286 Msa0045910:five_prime_UTR 45.0%
GAGGCAATAACTTGAGGGAA+AGG - chr1_1:77906418-77906437 Msa0045910:intron 45.0%
GGGAAAGGGACTTTGATAGA+AGG - chr1_1:77906433-77906452 Msa0045910:intron 45.0%
AGAAGGATCAAGGGTAGGAA+TGG - chr1_1:77906450-77906469 Msa0045910:intron 45.0%
TCCTCCAGCAGAAGACTATT+CGG + chr1_1:77906616-77906635 None:intergenic 45.0%
GCTTAAGCCATTCTAAGTGG+TGG - chr1_1:77906735-77906754 Msa0045910:intron 45.0%
GCAGATTGTCTTGTCAAGGA+AGG - chr1_1:77906807-77906826 Msa0045910:intron 45.0%
CTCTCTGTCTGATTCTTCCG+TGG - chr1_1:77901472-77901491 Msa0045910:three_prime_UTR 50.0%
CTTCCGTGGCCTGCAATTTA+CGG - chr1_1:77901486-77901505 Msa0045910:three_prime_UTR 50.0%
GTGAACCGAGAAAACCCACA+AGG + chr1_1:77901591-77901610 None:intergenic 50.0%
!! GGAGGTACCCTCCTTTGATT+CGG - chr1_1:77902436-77902455 Msa0045910:CDS 50.0%
GAAGGAGACCGAATCAAAGG+AGG + chr1_1:77902447-77902466 None:intergenic 50.0%
GGTGAAGGAGACCGAATCAA+AGG + chr1_1:77902450-77902469 None:intergenic 50.0%
TCAGTTTCTTCCGTACGAGG+AGG + chr1_1:77902471-77902490 None:intergenic 50.0%
TTTGGAAGAGGCTTCGGTTC+AGG - chr1_1:77902602-77902621 Msa0045910:CDS 50.0%
CCCGACAGAACTGGTAGAAA+GGG + chr1_1:77902678-77902697 None:intergenic 50.0%
CCCTTTCTACCAGTTCTGTC+GGG - chr1_1:77902675-77902694 Msa0045910:CDS 50.0%
ACCCGACAGAACTGGTAGAA+AGG + chr1_1:77902679-77902698 None:intergenic 50.0%
CTACTCGTGTGCATTCTAGC+AGG - chr1_1:77903194-77903213 Msa0045910:intron 50.0%
TGCATTCTAGCAGGGCAAAC+TGG - chr1_1:77903203-77903222 Msa0045910:intron 50.0%
GCATTCTAGCAGGGCAAACT+GGG - chr1_1:77903204-77903223 Msa0045910:intron 50.0%
TGAACCTAGAAGACGGGCAT+TGG + chr1_1:77903671-77903690 None:intergenic 50.0%
CAACATGACTGGCACTGTCA+TGG + chr1_1:77903881-77903900 None:intergenic 50.0%
GTACACACAGGTTTCACAGC+AGG + chr1_1:77903937-77903956 None:intergenic 50.0%
CGGAACCTGCTCAGAATTTG+AGG + chr1_1:77904055-77904074 None:intergenic 50.0%
AAATTCTGAGCAGGTTCCGC+TGG - chr1_1:77904056-77904075 Msa0045910:CDS 50.0%
ACCACTGGAACCTTCCAAAG+TGG - chr1_1:77904386-77904405 Msa0045910:CDS 50.0%
! TCCACTTTGGAAGGTTCCAG+TGG + chr1_1:77904390-77904409 None:intergenic 50.0%
ACTGGAACCTTCCAAAGTGG+AGG - chr1_1:77904389-77904408 Msa0045910:CDS 50.0%
AGTGGAGGATACCATATGCG+AGG - chr1_1:77904404-77904423 Msa0045910:CDS 50.0%
TCCACCACACGAGATGAAGT+GGG + chr1_1:77904510-77904529 None:intergenic 50.0%
TTCCACCACACGAGATGAAG+TGG + chr1_1:77904511-77904530 None:intergenic 50.0%
TGTGTGTGTGCAAGAGTCGA+TGG - chr1_1:77904626-77904645 Msa0045910:CDS 50.0%
TGTGTGCAAGAGTCGATGGA+TGG - chr1_1:77904630-77904649 Msa0045910:CDS 50.0%
CCATCAGTGGCTTGATTGCA+AGG + chr1_1:77904765-77904784 None:intergenic 50.0%
CCTTGCAATCAAGCCACTGA+TGG - chr1_1:77904762-77904781 Msa0045910:CDS 50.0%
ACATCTCTTCCAGCTCGAGT+TGG + chr1_1:77905011-77905030 None:intergenic 50.0%
AGAGTTAATAGCCGAGGTCG+TGG - chr1_1:77905310-77905329 Msa0045910:CDS 50.0%
! GCGCCACGGTATTGTTGATT+TGG + chr1_1:77905382-77905401 None:intergenic 50.0%
ATCAACAATACCGTGGCGCA+AGG - chr1_1:77905383-77905402 Msa0045910:CDS 50.0%
GTTCAGACTTAGGTGGCATG+AGG - chr1_1:77905626-77905645 Msa0045910:five_prime_UTR 50.0%
!! GGTCGGTTTTCAAGAGGAAG+AGG - chr1_1:77905733-77905752 Msa0045910:five_prime_UTR 50.0%
GAACGACTCCTCGATCTGAT+GGG + chr1_1:77905823-77905842 None:intergenic 50.0%
TGAACGACTCCTCGATCTGA+TGG + chr1_1:77905824-77905843 None:intergenic 50.0%
CTAGGAGATGTCCATTGACC+GGG + chr1_1:77905847-77905866 None:intergenic 50.0%
GGATGTCCACCAAAACCATC+TGG + chr1_1:77905895-77905914 None:intergenic 50.0%
CCAGTGAAAACAGGTCGATC+AGG + chr1_1:77905970-77905989 None:intergenic 50.0%
! CCTGATCGACCTGTTTTCAC+TGG - chr1_1:77905967-77905986 Msa0045910:five_prime_UTR 50.0%
ACTCTCTCCCCAGTGAAAAC+AGG + chr1_1:77905979-77905998 None:intergenic 50.0%
! TGTTTTCACTGGGGAGAGAG+TGG - chr1_1:77905978-77905997 Msa0045910:five_prime_UTR 50.0%
!! TGAGGGACATTGACTCTGCA+AGG - chr1_1:77906049-77906068 Msa0045910:intron 50.0%
!! GAGGGACATTGACTCTGCAA+GGG - chr1_1:77906050-77906069 Msa0045910:intron 50.0%
! ATTGACTCTGCAAGGGACCA+TGG - chr1_1:77906057-77906076 Msa0045910:intron 50.0%
TGACAGACCTTGGATGACCA+TGG + chr1_1:77906077-77906096 None:intergenic 50.0%
ACCATCCTACCGGAATGCAT+AGG + chr1_1:77906210-77906229 None:intergenic 50.0%
GTGAAGGAAATGGTGAGGAG+AGG - chr1_1:77906244-77906263 Msa0045910:five_prime_UTR 50.0%
AAGGAAATGGTGAGGAGAGG+AGG - chr1_1:77906247-77906266 Msa0045910:five_prime_UTR 50.0%
!! TCAGGCATGGTGGACAAGTT+TGG - chr1_1:77906523-77906542 Msa0045910:intron 50.0%
TCCGAATAGTCTTCTGCTGG+AGG - chr1_1:77906612-77906631 Msa0045910:intron 50.0%
AGTCTTCTGCTGGAGGACAA+TGG - chr1_1:77906619-77906638 Msa0045910:intron 50.0%
GCGAGCAGATTGTCTTGTCA+AGG - chr1_1:77906803-77906822 Msa0045910:intron 50.0%
TGAACCTATAAACGGGTGGG+TGG - chr1_1:77906912-77906931 Msa0045910:intron 50.0%
ACCTCTTCACGGCCTGAGAT+GGG + chr1_1:77902229-77902248 None:intergenic 55.0%
GTCTCCTTCACCTCCTCGTA+CGG - chr1_1:77902458-77902477 Msa0045910:CDS 55.0%
TCTTCCGTACGAGGAGGTGA+AGG + chr1_1:77902465-77902484 None:intergenic 55.0%
TTTGCTTATGCCGAAGCGGG+AGG - chr1_1:77902784-77902803 Msa0045910:CDS 55.0%
GGGTTTGATTCCTCCCGCTT+CGG + chr1_1:77902797-77902816 None:intergenic 55.0%
! ACAGACACGGCACTTGTTGG+TGG + chr1_1:77903361-77903380 None:intergenic 55.0%
GCATCACCAGCAGTAGCTGT+CGG + chr1_1:77903577-77903596 None:intergenic 55.0%
GAAGCCAATGCCCGTCTTCT+AGG - chr1_1:77903664-77903683 Msa0045910:CDS 55.0%
CCACTGTCTCGTGCATCAGT+AGG + chr1_1:77904198-77904217 None:intergenic 55.0%
CCTACTGATGCACGAGACAG+TGG - chr1_1:77904195-77904214 Msa0045910:CDS 55.0%
GATGCACGAGACAGTGGTGT+AGG - chr1_1:77904201-77904220 Msa0045910:CDS 55.0%
TGGTGAGGTTCGAGAACCAC+TGG - chr1_1:77904371-77904390 Msa0045910:CDS 55.0%
ACCAGTGGAGAAAGGAGTGG+TGG - chr1_1:77904470-77904489 Msa0045910:CDS 55.0%
ACCACCACTCCTTTCTCCAC+TGG + chr1_1:77904474-77904493 None:intergenic 55.0%
TCCCACTTCATCTCGTGTGG+TGG - chr1_1:77904506-77904525 Msa0045910:CDS 55.0%
GGCAGCGATCTGCCTGAAAT+AGG + chr1_1:77904990-77905009 None:intergenic 55.0%
ATTCCCAGTCACCACGACCT+CGG + chr1_1:77905324-77905343 None:intergenic 55.0%
TCACCAGGAGGAGGAAGAGA+TGG - chr1_1:77905538-77905557 Msa0045910:CDS 55.0%
ATGCCATCTCTTCCTCCTCC+TGG + chr1_1:77905544-77905563 None:intergenic 55.0%
GGAGGGGATGGTTCAGACTT+AGG - chr1_1:77905616-77905635 Msa0045910:exon 55.0%
GGGGATGGTTCAGACTTAGG+TGG - chr1_1:77905619-77905638 Msa0045910:exon 55.0%
TCTTCCATGCAGAGAAGGGG+TGG - chr1_1:77905772-77905791 Msa0045910:five_prime_UTR 55.0%
AAGACCACCCCTTCTCTGCA+TGG + chr1_1:77905779-77905798 None:intergenic 55.0%
AGATCGAGGAGTCGTTCACC+CGG - chr1_1:77905826-77905845 Msa0045910:five_prime_UTR 55.0%
CTTCTTGGGGACCTCCTTCT+AGG + chr1_1:77905865-77905884 None:intergenic 55.0%
GAGAGAGTGGTGAGGAGACA+TGG - chr1_1:77905991-77906010 Msa0045910:five_prime_UTR 55.0%
CAAGGGACCATGGTCATCCA+AGG - chr1_1:77906067-77906086 Msa0045910:intron 55.0%
AGTGGAGGGCCTATGCATTC+CGG - chr1_1:77906198-77906217 Msa0045910:five_prime_UTR 55.0%
GCCTATGCATTCCGGTAGGA+TGG - chr1_1:77906206-77906225 Msa0045910:five_prime_UTR 55.0%
GAAATGGTGAGGAGAGGAGG+AGG - chr1_1:77906250-77906269 Msa0045910:five_prime_UTR 55.0%
GGAGGTCTGAAAGAACGCAC+AGG + chr1_1:77906294-77906313 None:intergenic 55.0%
CACACCACCCACCCGTTTAT+AGG + chr1_1:77906919-77906938 None:intergenic 55.0%
CACCTCTTCACGGCCTGAGA+TGG + chr1_1:77902230-77902249 None:intergenic 60.0%
CCAGCAGTAGCTGTCGGACT+TGG + chr1_1:77903571-77903590 None:intergenic 60.0%
CCAAGTCCGACAGCTACTGC+TGG - chr1_1:77903568-77903587 Msa0045910:CDS 60.0%
AGATCGCTGCCAACTCGAGC+TGG - chr1_1:77904999-77905018 Msa0045910:CDS 60.0%
ATAGCCGAGGTCGTGGTGAC+TGG - chr1_1:77905317-77905336 Msa0045910:CDS 60.0%
TAGCCGAGGTCGTGGTGACT+GGG - chr1_1:77905318-77905337 Msa0045910:CDS 60.0%
GCACCAAGAAGGAGGTCACC+AGG - chr1_1:77905523-77905542 Msa0045910:CDS 60.0%
CCTCCTGGTGACCTCCTTCT+TGG + chr1_1:77905529-77905548 None:intergenic 60.0%
CCAAGAAGGAGGTCACCAGG+AGG - chr1_1:77905526-77905545 Msa0045910:CDS 60.0%
AGAAGGAGGTCACCAGGAGG+AGG - chr1_1:77905529-77905548 Msa0045910:CDS 60.0%
CAAGAGGAAGAGGACGGGGT+AGG - chr1_1:77905743-77905762 Msa0045910:five_prime_UTR 60.0%
GGAGTCGTTCACCCGGTCAA+TGG - chr1_1:77905833-77905852 Msa0045910:five_prime_UTR 60.0%
TCACTGGGGAGAGAGTGGTG+AGG - chr1_1:77905983-77906002 Msa0045910:five_prime_UTR 60.0%
GAGGGCCTATGCATTCCGGT+AGG - chr1_1:77906202-77906221 Msa0045910:five_prime_UTR 60.0%
GGTGAGGAGAGGAGGAGGTT+TGG - chr1_1:77906255-77906274 Msa0045910:five_prime_UTR 60.0%
GCCCATCTCAGGCCGTGAAG+AGG - chr1_1:77902225-77902244 Msa0045910:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 77901173 77907219 77901173 ID=Msa0045910;Name=Msa0045910
chr1_1 mRNA 77901173 77907219 77901173 ID=Msa0045910-mRNA-1;Parent=Msa0045910;Name=Msa0045910-mRNA-1;_AED=0.02;_eAED=0.02;_QI=868|1|1|1|1|0.5|4|623|1230
chr1_1 exon 77901173 77903182 77901173 ID=Msa0045910-mRNA-1:exon:26706;Parent=Msa0045910-mRNA-1
chr1_1 exon 77903320 77906020 77903320 ID=Msa0045910-mRNA-1:exon:26705;Parent=Msa0045910-mRNA-1
chr1_1 exon 77906146 77906402 77906146 ID=Msa0045910-mRNA-1:exon:26704;Parent=Msa0045910-mRNA-1
chr1_1 exon 77907004 77907219 77907004 ID=Msa0045910-mRNA-1:exon:26703;Parent=Msa0045910-mRNA-1
chr1_1 five_prime_UTR 77907004 77907219 77907004 ID=Msa0045910-mRNA-1:five_prime_utr;Parent=Msa0045910-mRNA-1
chr1_1 five_prime_UTR 77906146 77906402 77906146 ID=Msa0045910-mRNA-1:five_prime_utr;Parent=Msa0045910-mRNA-1
chr1_1 five_prime_UTR 77905626 77906020 77905626 ID=Msa0045910-mRNA-1:five_prime_utr;Parent=Msa0045910-mRNA-1
chr1_1 CDS 77903320 77905625 77903320 ID=Msa0045910-mRNA-1:cds;Parent=Msa0045910-mRNA-1
chr1_1 CDS 77901796 77903182 77901796 ID=Msa0045910-mRNA-1:cds;Parent=Msa0045910-mRNA-1
chr1_1 three_prime_UTR 77901173 77901795 77901173 ID=Msa0045910-mRNA-1:three_prime_utr;Parent=Msa0045910-mRNA-1
Gene Sequence

>Msa0045910

ATGGTGCAAAAAAGTTCTTTGCTTATGCCGAAGCGGGAGGAATCAAACCCTTCTTTGGATGTTGTGAATAGCAAGGAAAAGGTGATGCTCAATGAAGGTAATGAGAAAAATTCAGGATCCCAAACAATTAAGGCAAATCCTGAACTCTTATTGGCTGCAAAAGATGGTCTAGCACTTAGCATTGGAGCGGATGTGAGTAAACAAATTGTTCAAGACACAGTTAAGCAAGAGAGTCCTATAGTTCCTGGAAGTACTACTTTATCTTTAAGCATGAAGAAGCACTTGTTTCCGTCTGTTACAAGTTCGGATATCAATAAGATACAACCCAATATGGAGAAAGGAGAACCTGTCTCATTAGAACTATCTTTAAGCAAGGACGAAAGTAGTACTCACAGTTCAAATACCGATGCTAAAAGTGATAGTGACACTACTCGTGTGCATTCTAGCAGGGCAAACTGGGATCTGAATACTACAATGGATGCATGGGATGAAGGGAGTGATGCCAGTTCTGTTAAAACTTCTATTGATGGGTTGAATATTACTCACAGTGCACTTGGTGAGAAACAGTTTACGTGCTCGACTGGGATGACACCACCAACAAGTGCCGTGTCTGTAAATCAAACACGCAAAGAGAGTCAGAACAAAGCTTTCGTTACTTCAACTGGTCTGTACGGACAGCAGTTTAAATGTGCGGATCCACGTAATCTATGTCTTTCGCCTTTTGTTCAGAAGTATGTCGAGGATCCCTCTAGAGTATCTGTTAAACTAAATTCAGGTGTTGCTGCTCCTATTGTTAGTTTGCCAAGTCCGACAGCTACTGCTGGTGATGCAAATACTTCTAGTGTTAGGTTGGTAAAGCCAGAACCGTATGATGAGAACTTGAAAAAGAATTTGAAAGAAGCCAATGCCCGTCTTCTAGGTTCATTAGATAGTGTTGCTGTCAAAAAAGAATTTATTCAGCATTCAGTTATCAAGCCATCTAATGTCGATTCTACATTCATTAAATCTGAACCAAGTCATGAGGGTAGTCAAGAAAGATCCAAAACAGCAGAGAGTACCACAACAAATCAGTTGGGTAAAGCGTTGCCTCAAATGTCATTATGTTCATCTTCCATGACAGTGCCAGTCATGTTGAATTCAACACAAGTTTTTGCAGAGGCGGTTCATCCTGCTGTGAAACCTGTGTGTACAGCAGTATTAACTACCGGTAAAAATATAGTAGGTCAACTGGAGAATTATAGTTGTGCTAAAAGAGTCAATGTTGAGAAAGTATGTGACGCAGTTTCCTCAAATTCTGAGCAGGTTCCGCTGGTAACAGTTGCTATTTCTAATCCTATGGTTACTCCTGGCTTGAAATATTCTTCTATTGTAACCAAGAAAGAAGTTGCCGATGAACATGATGGTTGCAGATTGAAACTCATGAATGAGCCTACTGATGCACGAGACAGTGGTGTAGGCTGTGTTAGTGATGAAGAAAAGATAACCTTGTCAACTGATATGTTGGAAGATGATTCTTTTGGTTCTGGTCTCGAGTCCGATGAAAACCATGCTGTAACTGTTGCTGTAGACACTGAGCGATACACTGAAGATGATGATTATGAAGATGGTGAGGTTCGAGAACCACTGGAACCTTCCAAAGTGGAGGATACCATATGCGAGGTAAGAGAAACAGAACATCCTGACTCAGGTAATTATGATAATAAACCAGTGGAGAAAGGAGTGGTGGTGAGTAGTGATTATCCCACTTCATCTCGTGTGGTGGAAAATGACAATATGACTGTAATCCACAATGAAGTAGTTAGTAAAGATGACGTGGACATTCAAATGAATGAGAAACCTGGTAAAGTCATTGATAAAAATGTGTGTGTGCAAGAGTCGATGGATGGTGAAAAATCTGATATTGCTGCTGATAAGAGACCAGTTAATGTTTCGCAAGGGAAGTCATTAGATCTTTTAGAAAGAATAATTGTCTCTGAAACTCAGGAGACTGAACAACCTTGCAATCAAGCCACTGATGGAAGACATGTGATAGATGTTCTATGTGCTGATGAGGTTGTGAAAACAACTGACACTGTTAGAGAAACTGACTCAGATTTTCCGAAGATGGAAGGATCTGCTAATACTGAAGATATAACCAAAGATGTTACTAACGGTAGTAATCAAGGAAGAATCATAGATCTGTCACGAGCTGCCAGTTCGTCATCCCCTAGTAAAACTAGGCCTATTTCAGGCAGATCGCTGCCAACTCGAGCTGGAAGAGATGTATTTCCTGACACACTTGATGGTGACAAGTTATACAGAGGAAGGGATGAAGTTTACATTGATGGTCCCCACAGATTTTCAAGAGACAGACATCAAGACATGTCCACTAGAAATTCTAGATTGAATTTTGGGCGTGGTAGAGGAAGAGTTAATAGCCGAGGTCGTGGTGACTGGGAATCTGAGCGTGAATATTCTGGTGAATTTTACAATGGTCCAAATCAACAATACCGTGGCGCAAGGTCAAAATATTCATCTGCTATTGCTGATACTGATCTGGAGTACAATAATGCTGGTCCTGATGATTCATATGTTAATGGTCGGTTAGGTAGAAAGCCATTGAATGATGGCTCATATATTGCACCAAGAAGGAGGTCACCAGGAGGAGGAAGAGATGGCATTCAAATGGGTCATAGGAATCAAAGACCTGTTAGTCCTAATAGTAGATGTATTGGAGGGGATGGTTCAGACTTAGGTGGCATGAGGCATAGTGAGAAATTTATGAGAGGTTTTAATGATGATACTCTAGATTCTGTGTATACACGTCCCCAACAATTTGAGGGAATGGATGGTCGGTTTTCAAGAGGAAGAGGACGGGGTAGGAATTTTTCTTCCATGCAGAGAAGGGGTGGTCTTTCTCGAATGCGTTCAAAATCACCCATCAGATCGAGGAGTCGTTCACCCGGTCAATGGACATCTCCTAGAAGGAGGTCCCCAAGAAGAAGATCTCCAGATGGTTTTGGTGGACATCCTGAAATCACTCATAGAAGATCACCATTATACAGGGTTGACAGAATGAGATCCCCTGATCGACCTGTTTTCACTGGGGAGAGAGTGGTGAGGAGACATGGCTCACCTCAATTTATATCACGACCTTCTAATGATATGAGGGACATTGACTCTGCAAGGGACCATGGTCATCCAAGGTCTGTCATTTCCAATAGGAGTCCATCTGGTAGAATTTTAATCAGAAACAGAAGATTTGATGTTGTAGATCCCCGAGATCGATCTGATAATGATGATGAATACTTCGGTAGTGGAGGGCCTATGCATTCCGGTAGGATGGTTAACATTAACAATGGTGAAGGAAATGGTGAGGAGAGGAGGAGGTTTGGTGAAAGAAGAGGTCCTGTGCGTTCTTTCAGACCTCCTTATAACAATGGTAATAACAATGTTGGTGAGAACTTTCATCTAAATGCTGAAGACGGACCTAGACATTATAGATTCTGTTCAGATGATTCAGATTTTCATGAGAGAGGCAATAACTTGAGGGAAAGGGACTTTGATAGAAGGATCAAGGGTAGGAATGGAAATGGGCCACCTAGAAGAACAAGAAACATGGATGAGCAAGAAGATAATTTCAGGCATGGTGGACAAGTTTGGAGTGATGACAGTTTTGATGATATTTCCAGAGTGAAGAGGAAAAGATTTTGA
Protein sequence

>Msa0045910

MVQKSSLLMPKREESNPSLDVVNSKEKVMLNEGNEKNSGSQTIKANPELLLAAKDGLALSIGADVSKQIVQDTVKQESPIVPGSTTLSLSMKKHLFPSVTSSDINKIQPNMEKGEPVSLELSLSKDESSTHSSNTDAKSDSDTTRVHSSRANWDLNTTMDAWDEGSDASSVKTSIDGLNITHSALGEKQFTCSTGMTPPTSAVSVNQTRKESQNKAFVTSTGLYGQQFKCADPRNLCLSPFVQKYVEDPSRVSVKLNSGVAAPIVSLPSPTATAGDANTSSVRLVKPEPYDENLKKNLKEANARLLGSLDSVAVKKEFIQHSVIKPSNVDSTFIKSEPSHEGSQERSKTAESTTTNQLGKALPQMSLCSSSMTVPVMLNSTQVFAEAVHPAVKPVCTAVLTTGKNIVGQLENYSCAKRVNVEKVCDAVSSNSEQVPLVTVAISNPMVTPGLKYSSIVTKKEVADEHDGCRLKLMNEPTDARDSGVGCVSDEEKITLSTDMLEDDSFGSGLESDENHAVTVAVDTERYTEDDDYEDGEVREPLEPSKVEDTICEVRETEHPDSGNYDNKPVEKGVVVSSDYPTSSRVVENDNMTVIHNEVVSKDDVDIQMNEKPGKVIDKNVCVQESMDGEKSDIAADKRPVNVSQGKSLDLLERIIVSETQETEQPCNQATDGRHVIDVLCADEVVKTTDTVRETDSDFPKMEGSANTEDITKDVTNGSNQGRIIDLSRAASSSSPSKTRPISGRSLPTRAGRDVFPDTLDGDKLYRGRDEVYIDGPHRFSRDRHQDMSTRNSRLNFGRGRGRVNSRGRGDWESEREYSGEFYNGPNQQYRGARSKYSSAIADTDLEYNNAGPDDSYVNGRLGRKPLNDGSYIAPRRRSPGGGRDGIQMGHRNQRPVSPNSRCIGGDGSDLGGMRHSEKFMRGFNDDTLDSVYTRPQQFEGMDGRFSRGRGRGRNFSSMQRRGGLSRMRSKSPIRSRSRSPGQWTSPRRRSPRRRSPDGFGGHPEITHRRSPLYRVDRMRSPDRPVFTGERVVRRHGSPQFISRPSNDMRDIDSARDHGHPRSVISNRSPSGRILIRNRRFDVVDPRDRSDNDDEYFGSGGPMHSGRMVNINNGEGNGEERRRFGERRGPVRSFRPPYNNGNNNVGENFHLNAEDGPRHYRFCSDDSDFHERGNNLRERDFDRRIKGRNGNGPPRRTRNMDEQEDNFRHGGQVWSDDSFDDISRVKRKRF*