AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0061630

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0061630 MtrunA17_Chr5g0404241 97.412 425 7 3 1 425 1 421 0.0 838
Msa0061630 MtrunA17_Chr6g0459721 96.235 425 6 4 1 425 1 415 0.0 819
Msa0061630 MtrunA17_Chr1g0161851 97.368 266 5 1 160 425 99 362 0.0 524
Msa0061630 MtrunA17_Chr1g0161851 94.318 88 3 1 1 86 1 88 1.37e-51 177
Msa0061630 MtrunA17_Chr8g0372901 25.753 299 212 5 127 425 106 394 4.76e-23 100
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0061630 AT1G30960.1 63.122 442 138 8 1 425 4 437 2.92e-178 504
Msa0061630 AT5G66470.2 22.512 422 295 11 16 425 4 405 4.78e-23 100
Msa0061630 AT5G66470.1 22.512 422 295 11 16 425 4 405 4.78e-23 100

Find 139 sgRNAs with CRISPR-Local

Find 600 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATTGTGGTGGTGGTGATTT+TGG 0.088062 1_2:+20086673 None:intergenic
TCTTTGTCTGTTGGGATTAT+TGG 0.163623 1_2:-20086308 Msa0061630:CDS
TTTAGGCGTTTCATGATATC+TGG 0.252865 1_2:-20080146 Msa0061630:intron
CGAGCCTTGGCATCCTTATA+AGG 0.255466 1_2:+20082819 None:intergenic
ACTTCCTCGGTCATGGTAAA+TGG 0.262332 1_2:+20079784 None:intergenic
TCATCGTTGTTGTTGAGAAT+TGG 0.286758 1_2:+20086554 None:intergenic
GGCATTTGGTTGTATGAAAA+TGG 0.293668 1_2:-20078614 Msa0061630:three_prime_UTR
GAAGGTTGCGTCTGAATGTT+CGG 0.303080 1_2:+20086598 None:intergenic
GCAAGTGCATCTAGTTCTTC+AGG 0.309721 1_2:-20079020 Msa0061630:CDS
GAAGGGGAGAATGAAGTTTA+AGG 0.311054 1_2:-20086462 Msa0061630:CDS
ATCTTCTCTCACTAATTATA+TGG 0.316793 1_2:-20086267 Msa0061630:intron
TTGTAGCGGATTCCCTTATA+AGG 0.321115 1_2:-20082832 Msa0061630:CDS
CACTTTCTCACTAACAAATT+AGG 0.329869 1_2:-20079521 Msa0061630:CDS
ATTAACGAGGCGAATATCTT+TGG 0.333641 1_2:-20078984 Msa0061630:three_prime_UTR
CATCGTTGTTGTTGAGAATT+GGG 0.335773 1_2:+20086555 None:intergenic
TCCGGCAATCAAATAGTAAA+AGG 0.340130 1_2:+20078761 None:intergenic
AGTTGCGAGATGGTTCTCTT+AGG 0.351624 1_2:-20079553 Msa0061630:CDS
GAAGAATTCGAAGATCTTCC+TGG 0.354726 1_2:-20080301 Msa0061630:CDS
CCGAGACCGGACGGATAAAC+TGG 0.357157 1_2:-20086501 Msa0061630:CDS
TTCTTATTCCACGTCACCTT+CGG 0.364738 1_2:+20086527 None:intergenic
CCTGTTCTCAGGCAAGGTTT+TGG 0.367068 1_2:+20078861 None:intergenic
TTTACCTGGTGATATGTCTA+TGG 0.367841 1_2:+20082736 None:intergenic
ATCAGAAGTCTTTGTCTGTT+GGG 0.373365 1_2:-20086316 Msa0061630:CDS
AGATTTGACTCAGTTCTTGA+TGG 0.373919 1_2:-20080102 Msa0061630:CDS
CCAAAACCTTGCCTGAGAAC+AGG 0.379764 1_2:-20078861 Msa0061630:three_prime_UTR
GAATGTTCGGGTTGAGGATC+GGG 0.385005 1_2:+20086611 None:intergenic
AGAGAAGATTTGCCAGCATT+AGG 0.388806 1_2:+20086281 None:intergenic
TGTTTGTTTAACAGGAGAAT+AGG 0.397704 1_2:-20079082 Msa0061630:intron
TCGGGTTGAGGATCGGGTTC+CGG 0.405609 1_2:+20086617 None:intergenic
GGCGCTTGAGAAGGCTTTGT+TGG 0.406248 1_2:-20086414 Msa0061630:CDS
AAGGTTGCGTCTGAATGTTC+GGG 0.410075 1_2:+20086599 None:intergenic
AGCCAAGTTACTCACAATTT+GGG 0.415515 1_2:+20083931 None:intergenic
TGAATGTTCGGGTTGAGGAT+CGG 0.418854 1_2:+20086610 None:intergenic
GGGTTCCGGTGTGAGGGGTT+CGG 0.422928 1_2:+20086631 None:intergenic
CCAGTTTATCCGTCCGGTCT+CGG 0.425804 1_2:+20086501 None:intergenic
GCGTCTGAATGTTCGGGTTG+AGG 0.430265 1_2:+20086605 None:intergenic
AATGAAGTTTAAGGAGGAAG+AGG 0.431140 1_2:-20086453 Msa0061630:CDS
TTAAACTTCATTCTCCCCTT+CGG 0.438932 1_2:+20086464 None:intergenic
AGGATCGGGTTCCGGTGTGA+GGG 0.442223 1_2:+20086625 None:intergenic
TGTTGAAAGTGCTTGGAGTT+CGG 0.448891 1_2:-20082796 Msa0061630:CDS
CTATTTGATTGCCGGAGTCT+AGG 0.452398 1_2:-20078754 Msa0061630:three_prime_UTR
ATAAGTGCTATGGAAGAAAC+AGG 0.452402 1_2:-20078823 Msa0061630:three_prime_UTR
TAAAAGGCACAACAAATTGC+CGG 0.454515 1_2:+20078777 None:intergenic
AAAATGGTGAGATACGAGTT+TGG 0.461973 1_2:-20078598 Msa0061630:three_prime_UTR
GTGTAATTCACACACCCCTT+TGG 0.467259 1_2:+20078908 None:intergenic
GGCCAACTCAAGATTCTTGT+GGG 0.471826 1_2:-20079500 Msa0061630:CDS
GAGGATCGGGTTCCGGTGTG+AGG 0.472229 1_2:+20086624 None:intergenic
AGTTGTGCGTGAAAGGTTGC+TGG 0.472622 1_2:-20079740 Msa0061630:CDS
AGCACTTTCAACACGAGCCT+TGG 0.476228 1_2:+20082806 None:intergenic
TTTCATGATATCTGGAATGA+AGG 0.478892 1_2:-20080138 Msa0061630:CDS
TAAACCCGAGGAGGAGGAGG+AGG 0.480366 1_2:-20086378 Msa0061630:CDS
GGAGGAGAAAGATGAAGATG+TGG 0.482639 1_2:-20086357 Msa0061630:CDS
AATAGGCAGTAGAACGGCCC+TGG 0.484531 1_2:-20079816 Msa0061630:intron
TCTATGATGACCCTGTTCTC+AGG 0.485261 1_2:+20078850 None:intergenic
GAGCCTTGGCATCCTTATAA+GGG 0.485844 1_2:+20082820 None:intergenic
GACTCAGTTCTTGATGGAGC+AGG 0.486458 1_2:-20080096 Msa0061630:CDS
CATAGATAAAATAAGTGCTA+TGG 0.488073 1_2:-20078833 Msa0061630:three_prime_UTR
CATTAGAAGTTGTGCGTGAA+AGG 0.488172 1_2:-20079747 Msa0061630:CDS
GAGTAAACCCGAGGAGGAGG+AGG 0.490946 1_2:-20086381 Msa0061630:CDS
AGACCTTACCTTTCAAATCC+AGG 0.490953 1_2:+20080283 None:intergenic
GATCAGAAGTCTTTGTCTGT+TGG 0.496354 1_2:-20086317 Msa0061630:CDS
TTTCATAACTTCCTCGGTCA+TGG 0.497634 1_2:+20079777 None:intergenic
AACCTATGTTCAATATCGTA+TGG 0.502441 1_2:+20079590 None:intergenic
CACCACAACTCATGAAGTTG+TGG 0.507926 1_2:-20083975 Msa0061630:CDS
ATTATTGGTGCTCCTAATGC+TGG 0.509195 1_2:-20086293 Msa0061630:CDS
GTTGCTGGACCATGTACATC+AGG 0.510248 1_2:-20079725 Msa0061630:intron
TTGAACATAGGTTGATTGAC+TGG 0.510746 1_2:-20079580 Msa0061630:CDS
TTCATGATATCTGGAATGAA+GGG 0.518749 1_2:-20080137 Msa0061630:CDS
GAAGTTTAAGGAGGAAGAGG+AGG 0.519836 1_2:-20086450 Msa0061630:CDS
CTACAATTTAGCACGAGCCC+TGG 0.523044 1_2:+20082849 None:intergenic
GGTTGTTTATGAAAATTGAA+AGG 0.524496 1_2:-20078708 Msa0061630:three_prime_UTR
GGTAAATGGATCTTCTTCCC+AGG 0.528565 1_2:+20079798 None:intergenic
GCAGCATGTAAAATGCCAAA+GGG 0.531201 1_2:-20078923 Msa0061630:three_prime_UTR
CAAAACCTTGCCTGAGAACA+GGG 0.533313 1_2:-20078860 Msa0061630:three_prime_UTR
TGTAAAACTGATCAAGCGAA+TGG 0.536305 1_2:-20080413 Msa0061630:CDS
AAGATCTTCCTGGATTTGAA+AGG 0.540512 1_2:-20080291 Msa0061630:intron
AGATGTGGGTGTTGTGAAAG+AGG 0.541128 1_2:-20086342 Msa0061630:CDS
AGGCCAACTCAAGATTCTTG+TGG 0.543483 1_2:-20079501 Msa0061630:CDS
TCCCCACAAGAATCTTGAGT+TGG 0.544132 1_2:+20079498 None:intergenic
AAGAAACAGGTTGAGTTCGT+TGG 0.544765 1_2:-20078810 Msa0061630:three_prime_UTR
TTAAGGAGGAAGAGGAGGAG+AGG 0.547469 1_2:-20086445 Msa0061630:CDS
GGTGTTCGGCGATGAGCCGA+AGG 0.548607 1_2:-20086480 Msa0061630:CDS
GTAAAACTGATCAAGCGAAT+GGG 0.549419 1_2:-20080412 Msa0061630:CDS
GAAAACAAAGGCGCTTGAGA+AGG 0.554111 1_2:-20086423 Msa0061630:CDS
AGGCTCGTGTTGAAAGTGCT+TGG 0.555577 1_2:-20082803 Msa0061630:CDS
CGGACGGATAAACTGGTGTT+CGG 0.564440 1_2:-20086494 Msa0061630:CDS
ATGAAAAGCCGAAGGTGACG+TGG 0.564826 1_2:-20086535 Msa0061630:CDS
CGAACACCAGTTTATCCGTC+CGG 0.565281 1_2:+20086495 None:intergenic
GAGGAGAAAGATGAAGATGT+GGG 0.569215 1_2:-20086356 Msa0061630:CDS
AAGATTCTTGTGGGGAAGCG+TGG 0.571176 1_2:-20079491 Msa0061630:CDS
GTTGAGTAAACCCGAGGAGG+AGG 0.571215 1_2:-20086384 Msa0061630:CDS
GGAATAAGAAATACCGAGAC+CGG 0.573614 1_2:-20086514 Msa0061630:CDS
AGCGCGGAAGATTGTGGTGG+TGG 0.574708 1_2:+20086664 None:intergenic
GAAGAAAGCGCGGAAGATTG+TGG 0.575424 1_2:+20086658 None:intergenic
ACCACAACTCATGAAGTTGT+GGG 0.577761 1_2:-20083974 Msa0061630:CDS
ATCATCATAGGTTGGAACAA+AGG 0.577776 1_2:-20084023 Msa0061630:intron
GACTGGAAAGAGTTGCGAGA+TGG 0.578343 1_2:-20079563 Msa0061630:CDS
TGCAGCATGTAAAATGCCAA+AGG 0.579327 1_2:-20078924 Msa0061630:three_prime_UTR
TAGAAGCTAATGAAGAGCTA+AGG 0.579922 1_2:-20079057 Msa0061630:CDS
GATGACCCTGTTCTCAGGCA+AGG 0.582636 1_2:+20078855 None:intergenic
GGATCGGGTTCCGGTGTGAG+GGG 0.585238 1_2:+20086626 None:intergenic
CAACAATTACCTGATGTACA+TGG 0.586750 1_2:+20079716 None:intergenic
TTCCATACGATATTGAACAT+AGG 0.595384 1_2:-20079592 Msa0061630:CDS
GCCCACAACTTCATGAGTTG+TGG 0.595586 1_2:+20083973 None:intergenic
GGGGAGAATGAAGTTTAAGG+AGG 0.599933 1_2:-20086459 Msa0061630:CDS
GTTGTGGGCGTGTTGACTAA+AGG 0.601040 1_2:-20083959 Msa0061630:CDS
TGATCAAGCGAATGGGAGAA+CGG 0.601143 1_2:-20080405 Msa0061630:CDS
ATAGGCAGTAGAACGGCCCT+GGG 0.601733 1_2:-20079815 Msa0061630:intron
AAAATTGAGTTCCTAGACTC+CGG 0.604158 1_2:+20078743 None:intergenic
GTGTTCGGCGATGAGCCGAA+GGG 0.604636 1_2:-20086479 Msa0061630:CDS
TAAGAAATACCGAGACCGGA+CGG 0.606280 1_2:-20086510 Msa0061630:CDS
CTCCGCCGAACCCCTCACAC+CGG 0.606587 1_2:-20086636 Msa0061630:CDS
GTAAATGGATCTTCTTCCCA+GGG 0.615060 1_2:+20079799 None:intergenic
TTCCGGTGTGAGGGGTTCGG+CGG 0.620498 1_2:+20086634 None:intergenic
TTATGCAATAGGCAGTAGAA+CGG 0.620601 1_2:-20079822 Msa0061630:intron
CTACTATGCAAGAAGAACCA+TGG 0.626258 1_2:+20086756 None:intergenic
AGAGGAGGAGAGGAAAACAA+AGG 0.628231 1_2:-20086435 Msa0061630:CDS
ATGTCCATAGACATATCACC+AGG 0.629127 1_2:-20082740 Msa0061630:intron
ATAGGTTGGAACAAAGGTGG+CGG 0.633224 1_2:-20084017 Msa0061630:intron
TCATGATATCTGGAATGAAG+GGG 0.634102 1_2:-20080136 Msa0061630:CDS
ATCATAGGTTGGAACAAAGG+TGG 0.643299 1_2:-20084020 Msa0061630:intron
ATTCCCTTATAAGGATGCCA+AGG 0.648726 1_2:-20082823 Msa0061630:CDS
TGCGTTGAGTAAACCCGAGG+AGG 0.651939 1_2:-20086387 Msa0061630:CDS
TGTTCGGCGATGAGCCGAAG+GGG 0.654889 1_2:-20086478 Msa0061630:CDS
CAACAACGATGAAAAGCCGA+AGG 0.666098 1_2:-20086543 Msa0061630:CDS
GGGTTAAGAACAGACTGCAA+CGG 0.670189 1_2:+20086810 None:intergenic
CATGATATCTGGAATGAAGG+GGG 0.674998 1_2:-20080135 Msa0061630:CDS
TTCGTAGTGAGAACTATCGA+AGG 0.676423 1_2:+20086580 None:intergenic
GCCAACTCAAGATTCTTGTG+GGG 0.679081 1_2:-20079499 Msa0061630:CDS
AGCTGCGTTGAGTAAACCCG+AGG 0.680436 1_2:-20086390 Msa0061630:CDS
CAGCATGTAAAATGCCAAAG+GGG 0.686050 1_2:-20078922 Msa0061630:three_prime_UTR
GGGCTCGTGCTAAATTGTAG+CGG 0.686569 1_2:-20082846 Msa0061630:CDS
AGATCCATTTACCATGACCG+AGG 0.703637 1_2:-20079788 Msa0061630:CDS
TGTGGGTGTTGTGAAAGAGG+AGG 0.710374 1_2:-20086339 Msa0061630:CDS
GAAAGCGCGGAAGATTGTGG+TGG 0.712487 1_2:+20086661 None:intergenic
GTTCGTTGGTGATCTCACGC+CGG 0.719291 1_2:-20078796 Msa0061630:three_prime_UTR
ATGCTGCATAACATGGTGTG+TGG 0.722838 1_2:+20078939 None:intergenic
GTTCGGCGGAGAAGAAAGCG+CGG 0.728248 1_2:+20086648 None:intergenic
TTAAGCTCAAATGATTAACG+AGG 0.772446 1_2:-20078997 Msa0061630:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATTAATATTATAAATT+TGG - chr1_2:20083427-20083446 Msa0061630:intron 0.0%
!! TTTATTAATATTATAAATTT+GGG - chr1_2:20083428-20083447 Msa0061630:intron 0.0%
!! AATTTCTCAAATAATAAATT+TGG + chr1_2:20080603-20080622 None:intergenic 10.0%
!! AATAAAATTAAAACAAGTTT+AGG - chr1_2:20082860-20082879 Msa0061630:CDS 10.0%
!! ATAAAATTAAAACAAGTTTA+GGG - chr1_2:20082861-20082880 Msa0061630:CDS 10.0%
!! TTTAAGAAATAAAAATAATG+AGG - chr1_2:20082888-20082907 Msa0061630:intron 10.0%
!! TTAAGAAATAAAAATAATGA+GGG - chr1_2:20082889-20082908 Msa0061630:intron 10.0%
!! ATAAATAATAGATAAAAGTT+GGG + chr1_2:20084441-20084460 None:intergenic 10.0%
!!! TTATATATAAGCTATTTCTA+TGG + chr1_2:20079530-20079549 None:intergenic 15.0%
!!! TTTATTTCTCAAATGAAATA+AGG - chr1_2:20079896-20079915 Msa0061630:intron 15.0%
!! ATGAGATGTAATAATTATTT+AGG - chr1_2:20080099-20080118 Msa0061630:CDS 15.0%
!! TGAGATGTAATAATTATTTA+GGG - chr1_2:20080100-20080119 Msa0061630:CDS 15.0%
!!! TTGTTTTTATATGCTTAATT+TGG - chr1_2:20082073-20082092 Msa0061630:intron 15.0%
!!! TTTTTTTACTTCAATTTTTC+TGG - chr1_2:20083985-20084004 Msa0061630:CDS 15.0%
!!! TTTTTTACTTCAATTTTTCT+GGG - chr1_2:20083986-20084005 Msa0061630:CDS 15.0%
!! GATAAATAATAGATAAAAGT+TGG + chr1_2:20084442-20084461 None:intergenic 15.0%
!! AATGTATAACATTAAAAGAA+TGG + chr1_2:20084862-20084881 None:intergenic 15.0%
!!! TATTGGCTATTTTATTATTT+AGG - chr1_2:20085205-20085224 Msa0061630:intron 15.0%
!! TTGTATACAAATTATAGTAT+TGG - chr1_2:20085326-20085345 Msa0061630:intron 15.0%
!! AATTGTGATTCTATATTTAA+AGG + chr1_2:20085404-20085423 None:intergenic 15.0%
!! GATTAATTAAAGTTTCTATA+GGG - chr1_2:20086167-20086186 Msa0061630:intron 15.0%
!!! TTTTATAAAAAACACAACTA+GGG - chr1_2:20086733-20086752 Msa0061630:exon 15.0%
!! TCATATATCCATAATAAACT+AGG + chr1_2:20079696-20079715 None:intergenic 20.0%
!!! TTCTTTTATTGGTAGAAAAA+GGG + chr1_2:20079827-20079846 None:intergenic 20.0%
!!! TTTCTTTTATTGGTAGAAAA+AGG + chr1_2:20079828-20079847 None:intergenic 20.0%
!! AACTAAATTTCTTAGTAATG+TGG + chr1_2:20079922-20079941 None:intergenic 20.0%
!! TAGATAATGTACATATTTCT+AGG + chr1_2:20079969-20079988 None:intergenic 20.0%
!! CATCACAAAAATTAACAAAA+AGG + chr1_2:20080082-20080101 None:intergenic 20.0%
!! TTCTAACTTCTAAATGAAAA+CGG + chr1_2:20080204-20080223 None:intergenic 20.0%
!! TTTCATTTAGAAGTTAGAAT+TGG - chr1_2:20080205-20080224 Msa0061630:intron 20.0%
!! TTCATTTAGAAGTTAGAATT+GGG - chr1_2:20080206-20080225 Msa0061630:intron 20.0%
!! TGACTGATAATTTCTTTAAT+AGG - chr1_2:20081040-20081059 Msa0061630:intron 20.0%
!! GACTGATAATTTCTTTAATA+GGG - chr1_2:20081041-20081060 Msa0061630:intron 20.0%
!! TTTAAATTTCAATCAGCATT+TGG - chr1_2:20081281-20081300 Msa0061630:intron 20.0%
!! GAAATAACATAAATCATGTT+TGG + chr1_2:20081319-20081338 None:intergenic 20.0%
!!! TATTTCTGATTTATCATCAT+AGG - chr1_2:20081333-20081352 Msa0061630:intron 20.0%
!! ATTTGAATGAGTCAAATTAT+TGG - chr1_2:20082096-20082115 Msa0061630:intron 20.0%
!! TTTGAATGAGTCAAATTATT+GGG - chr1_2:20082097-20082116 Msa0061630:intron 20.0%
!! AGTATATTTACTAAAACCTT+TGG - chr1_2:20082361-20082380 Msa0061630:intron 20.0%
!!! TTCATTATGTTGTTTTATGA+TGG - chr1_2:20082415-20082434 Msa0061630:intron 20.0%
!!! TCATTATGTTGTTTTATGAT+GGG - chr1_2:20082416-20082435 Msa0061630:intron 20.0%
!! TAACAAATGAATTTAGTTGT+AGG - chr1_2:20082942-20082961 Msa0061630:intron 20.0%
!!! TATAGTCTTATTTAATCCAA+TGG - chr1_2:20083310-20083329 Msa0061630:intron 20.0%
!! TCTTAAAGTTGTATTATTCA+CGG - chr1_2:20083672-20083691 Msa0061630:intron 20.0%
!! CTATATATCTTTGTAAAATC+TGG + chr1_2:20083710-20083729 None:intergenic 20.0%
!! AGTAAAGTAAATGAATAAAG+TGG + chr1_2:20083767-20083786 None:intergenic 20.0%
!!! GGATAAATTGATTTTTTTTC+TGG - chr1_2:20083960-20083979 Msa0061630:CDS 20.0%
!! ATAGTTGTTAACATAGAAAT+AGG - chr1_2:20084069-20084088 Msa0061630:intron 20.0%
!! AAAGTTTAACAATTTGATAC+AGG - chr1_2:20084191-20084210 Msa0061630:intron 20.0%
!!! TTTTCGGGAAAAAATTTATA+GGG + chr1_2:20084283-20084302 None:intergenic 20.0%
!!! ATTTTCGGGAAAAAATTTAT+AGG + chr1_2:20084284-20084303 None:intergenic 20.0%
!!! AACAATATAGTCACTTTTAT+AGG + chr1_2:20084358-20084377 None:intergenic 20.0%
!! ATTGATGGAATGTTAAAAAA+AGG + chr1_2:20084916-20084935 None:intergenic 20.0%
!!! TTTTAACATTCCATCAATAT+AGG - chr1_2:20084918-20084937 Msa0061630:intron 20.0%
!! GAAAAATAAATTCATATGCA+TGG + chr1_2:20085441-20085460 None:intergenic 20.0%
!!! TTAATTGTTTGTTATGCAAT+AGG - chr1_2:20085535-20085554 Msa0061630:intron 20.0%
!! GATTAGATAATAGTGTTTAT+TGG - chr1_2:20085728-20085747 Msa0061630:intron 20.0%
!!! AATAATGTCATATCTAAAAC+AGG + chr1_2:20085966-20085985 None:intergenic 20.0%
!!! TGTTTTAGATATGACATTAT+TGG - chr1_2:20085965-20085984 Msa0061630:intron 20.0%
!! TTGAGTTTAGACATAAAATA+TGG - chr1_2:20085999-20086018 Msa0061630:intron 20.0%
!! TGAGTTTAGACATAAAATAT+GGG - chr1_2:20086000-20086019 Msa0061630:intron 20.0%
!! CGATTAATTAAAGTTTCTAT+AGG - chr1_2:20086166-20086185 Msa0061630:intron 20.0%
!!! CTCAATTTTCTTTAAGTTTA+TGG - chr1_2:20086639-20086658 Msa0061630:CDS 20.0%
!!! GTTTTATAAAAAACACAACT+AGG - chr1_2:20086732-20086751 Msa0061630:exon 20.0%
!! AGAAACGATTTTTGTGTTTT+GGG + chr1_2:20078591-20078610 None:intergenic 25.0%
!! AAGAAACGATTTTTGTGTTT+TGG + chr1_2:20078592-20078611 None:intergenic 25.0%
!!! AGTGTTTTTGAAGATTCTTA+AGG + chr1_2:20078656-20078675 None:intergenic 25.0%
! ATCTTCTCTCACTAATTATA+TGG - chr1_2:20079101-20079120 Msa0061630:intron 25.0%
! TCATTTACTCAAATTATTGC+CGG + chr1_2:20079604-20079623 None:intergenic 25.0%
! GTAAATGAATGTAACTGTTT+CGG - chr1_2:20079616-20079635 Msa0061630:intron 25.0%
!!! ATGATAAACCATTTTTTGGT+GGG + chr1_2:20079671-20079690 None:intergenic 25.0%
!!! TATGATAAACCATTTTTTGG+TGG + chr1_2:20079672-20079691 None:intergenic 25.0%
! TATCATAGCCTAGTTTATTA+TGG - chr1_2:20079685-20079704 Msa0061630:intron 25.0%
!!! TTCGTTTTTGTTTGTTTGTT+TGG - chr1_2:20079791-20079810 Msa0061630:CDS 25.0%
!!! TCGTTTTTGTTTGTTTGTTT+GGG - chr1_2:20079792-20079811 Msa0061630:CDS 25.0%
! TAAAATCCACTCCAAAAATT+TGG + chr1_2:20079861-20079880 None:intergenic 25.0%
! TACTAATGATGTTATTCTCA+TGG + chr1_2:20080014-20080033 None:intergenic 25.0%
!!! GATTTTATTTCCATCTTGTA+AGG - chr1_2:20081125-20081144 Msa0061630:intron 25.0%
! TAGAACATGATAATATTGAG+TGG + chr1_2:20081159-20081178 None:intergenic 25.0%
! AAGTAGTAGATGCAATAAAT+TGG - chr1_2:20081533-20081552 Msa0061630:intron 25.0%
! CTATATCAATTATGTTTGAC+TGG - chr1_2:20081658-20081677 Msa0061630:intron 25.0%
! CAAAAAAAACCATGTTTCAT+TGG + chr1_2:20081742-20081761 None:intergenic 25.0%
!!! ATATATTTGTGCTTTAGAAC+TGG - chr1_2:20081820-20081839 Msa0061630:intron 25.0%
!! GTGTAATTGTATTTTGCAAT+TGG + chr1_2:20082007-20082026 None:intergenic 25.0%
! ATGAAGCAGTGATATTAATT+TGG + chr1_2:20082268-20082287 None:intergenic 25.0%
! ATAATGAAACAGTAAGATCA+TGG + chr1_2:20082403-20082422 None:intergenic 25.0%
! ATTAAACAAAACACTTTACC+TGG + chr1_2:20082649-20082668 None:intergenic 25.0%
!!! AAAGTGTTTTGTTTAATCTG+AGG - chr1_2:20082652-20082671 Msa0061630:intron 25.0%
! TATTTAATCCAATGGTATAG+TGG + chr1_2:20082713-20082732 None:intergenic 25.0%
!!! TATGGTCTTATTTAATCCAA+TGG + chr1_2:20082721-20082740 None:intergenic 25.0%
!! GGATGAAAATGAGTATTTTT+AGG - chr1_2:20082910-20082929 Msa0061630:intron 25.0%
! TGAATTTAGTTGTAGGAATT+AGG - chr1_2:20082949-20082968 Msa0061630:intron 25.0%
!!! TTTTCTTTGGGTTTAGTTTT+TGG - chr1_2:20082973-20082992 Msa0061630:intron 25.0%
!!! TTTCTTTGGGTTTAGTTTTT+GGG - chr1_2:20082974-20082993 Msa0061630:intron 25.0%
! AAGATATGATTTAGATCTGA+AGG - chr1_2:20083089-20083108 Msa0061630:intron 25.0%
!! AATCAAGAAGTATATTAGAC+TGG - chr1_2:20084100-20084119 Msa0061630:intron 25.0%
!! ATCAAGAAGTATATTAGACT+GGG - chr1_2:20084101-20084120 Msa0061630:intron 25.0%
!! AATATGGACCTCTTTTTAAA+GGG + chr1_2:20084253-20084272 None:intergenic 25.0%
!! TAATATGGACCTCTTTTTAA+AGG + chr1_2:20084254-20084273 None:intergenic 25.0%
! TTTAAAAAGAGGTCCATATT+AGG - chr1_2:20084253-20084272 Msa0061630:intron 25.0%
! TTAAAAAGAGGTCCATATTA+GGG - chr1_2:20084254-20084273 Msa0061630:intron 25.0%
!!! AGTTTCGTATTTGGAATTTT+CGG + chr1_2:20084299-20084318 None:intergenic 25.0%
! TGACTATATTGTTGCTAAAT+TGG - chr1_2:20084365-20084384 Msa0061630:intron 25.0%
! ATTATTTATCCAAGCAAAGA+TGG - chr1_2:20084452-20084471 Msa0061630:intron 25.0%
! TTATCTGCTTAACTTATAGT+TGG - chr1_2:20084623-20084642 Msa0061630:intron 25.0%
! TATCTGCTTAACTTATAGTT+GGG - chr1_2:20084624-20084643 Msa0061630:intron 25.0%
! GGAATGTTAAAAAAAGGAAT+GGG + chr1_2:20084910-20084929 None:intergenic 25.0%
! TGGAATGTTAAAAAAAGGAA+TGG + chr1_2:20084911-20084930 None:intergenic 25.0%
!!! TTATAGTATTGGTAACTTCA+AGG - chr1_2:20085337-20085356 Msa0061630:intron 25.0%
!! AAACATCAATGTTCTTTTCT+GGG - chr1_2:20085360-20085379 Msa0061630:intron 25.0%
! GTGATTCTATATTTAAAGGT+GGG + chr1_2:20085400-20085419 None:intergenic 25.0%
! TGTGATTCTATATTTAAAGG+TGG + chr1_2:20085401-20085420 None:intergenic 25.0%
! TAAAATCCAATGTTAAGTCT+TGG + chr1_2:20085518-20085537 None:intergenic 25.0%
!! TATCATTTTCATAACTTCCT+CGG + chr1_2:20085600-20085619 None:intergenic 25.0%
! ACTTTAATTAATCGACCAAA+AGG + chr1_2:20086160-20086179 None:intergenic 25.0%
! AAGAAACTGAAGTAAATAAG+AGG + chr1_2:20086231-20086250 None:intergenic 25.0%
! TGTTAAACAAACATGAATAG+GGG + chr1_2:20086279-20086298 None:intergenic 25.0%
! CTGTTAAACAAACATGAATA+GGG + chr1_2:20086280-20086299 None:intergenic 25.0%
! CATAGATAAAATAAGTGCTA+TGG - chr1_2:20086535-20086554 Msa0061630:CDS 25.0%
! GGTTGTTTATGAAAATTGAA+AGG - chr1_2:20086660-20086679 Msa0061630:CDS 25.0%
!!! TTTTGTGTTTTGGGGTTTAA+GGG + chr1_2:20078582-20078601 None:intergenic 30.0%
!!! TTTTTGTGTTTTGGGGTTTA+AGG + chr1_2:20078583-20078602 None:intergenic 30.0%
! GAAACGATTTTTGTGTTTTG+GGG + chr1_2:20078590-20078609 None:intergenic 30.0%
ATATGTTATGTGAGACTGTT+TGG - chr1_2:20079370-20079389 Msa0061630:intron 30.0%
TATGTTATGTGAGACTGTTT+GGG - chr1_2:20079371-20079390 Msa0061630:intron 30.0%
AGCTTATATATAAGCGTTTG+TGG - chr1_2:20079537-20079556 Msa0061630:CDS 30.0%
!!! TGATAAACCATTTTTTGGTG+GGG + chr1_2:20079670-20079689 None:intergenic 30.0%
!!! GGCTATGATAAACCATTTTT+TGG + chr1_2:20079675-20079694 None:intergenic 30.0%
AAGCAAAGGAAATACAATCA+GGG + chr1_2:20079725-20079744 None:intergenic 30.0%
AAAGCAAAGGAAATACAATC+AGG + chr1_2:20079726-20079745 None:intergenic 30.0%
!! CGTTTTTGTTTGTTTGTTTG+GGG - chr1_2:20079793-20079812 Msa0061630:CDS 30.0%
TTACTTAAATTGGTTACCCA+AGG + chr1_2:20080132-20080151 None:intergenic 30.0%
TTGGGTAACCAATTTAAGTA+AGG - chr1_2:20080131-20080150 Msa0061630:CDS 30.0%
TGGGTAACCAATTTAAGTAA+GGG - chr1_2:20080132-20080151 Msa0061630:CDS 30.0%
! AATAAGTTGAAACCAACTTG+TGG - chr1_2:20080240-20080259 Msa0061630:intron 30.0%
! CTATTTTATTATCTCTCCCA+GGG - chr1_2:20080274-20080293 Msa0061630:intron 30.0%
GTTTAAATAGGCAAGCTATT+CGG - chr1_2:20080359-20080378 Msa0061630:CDS 30.0%
!! AATAGTTCTAGATGAAGTTG+AGG - chr1_2:20080485-20080504 Msa0061630:intron 30.0%
GAACTGAGTTCAATTTATGT+GGG - chr1_2:20080513-20080532 Msa0061630:intron 30.0%
ACACATATTAGACACACATA+CGG - chr1_2:20080750-20080769 Msa0061630:intron 30.0%
GTTAAAGATTTGTCTAGGAA+GGG - chr1_2:20080775-20080794 Msa0061630:intron 30.0%
CAAATCCTTTCCATTATTGA+GGG + chr1_2:20080823-20080842 None:intergenic 30.0%
GATAAACCATCATTCCATAT+CGG + chr1_2:20080885-20080904 None:intergenic 30.0%
!!! GAGGTTTTAGTTAGAAAAGT+TGG - chr1_2:20081073-20081092 Msa0061630:intron 30.0%
TCTGATTTATCATCATAGGT+TGG - chr1_2:20081337-20081356 Msa0061630:intron 30.0%
TTTATTTCGTCGTGTGTAAA+AGG - chr1_2:20081466-20081485 Msa0061630:intron 30.0%
TTATTTCGTCGTGTGTAAAA+GGG - chr1_2:20081467-20081486 Msa0061630:intron 30.0%
TTTCCATCTTAGTCAGAATA+CGG - chr1_2:20081583-20081602 Msa0061630:intron 30.0%
GTATTCAATAGTATCAGTGA+AGG - chr1_2:20081685-20081704 Msa0061630:intron 30.0%
GTCAAATTATTGGGAAGAAA+AGG - chr1_2:20082106-20082125 Msa0061630:intron 30.0%
TGGCTTCATTTATTATAAGC+TGG + chr1_2:20082146-20082165 None:intergenic 30.0%
! GCAGTGATATTAATTTGGTA+GGG + chr1_2:20082263-20082282 None:intergenic 30.0%
! AGCAGTGATATTAATTTGGT+AGG + chr1_2:20082264-20082283 None:intergenic 30.0%
TGCACACTGAATTGAAAAAA+TGG - chr1_2:20082819-20082838 Msa0061630:CDS 30.0%
! TAGGAATTAGGCTTTTCTTT+GGG - chr1_2:20082961-20082980 Msa0061630:intron 30.0%
ATAATGCTCTAGTAGTGTAT+GGG + chr1_2:20083051-20083070 None:intergenic 30.0%
AATAATGCTCTAGTAGTGTA+TGG + chr1_2:20083052-20083071 None:intergenic 30.0%
! TATCTTTCATTTTCTCTCGA+AGG + chr1_2:20083075-20083094 None:intergenic 30.0%
GAGGAGTAAATATTCATATG+TGG - chr1_2:20083150-20083169 Msa0061630:intron 30.0%
ATATGTGGTTGTAGAACAAT+CGG - chr1_2:20083165-20083184 Msa0061630:intron 30.0%
TTCAGAGAAGATATTAGATC+TGG - chr1_2:20083264-20083283 Msa0061630:intron 30.0%
! TTTCTAAAGGGTGCATATTA+GGG + chr1_2:20083457-20083476 None:intergenic 30.0%
!! TTTTCTAAAGGGTGCATATT+AGG + chr1_2:20083458-20083477 None:intergenic 30.0%
! AATATGCACCCTTTAGAAAA+TGG - chr1_2:20083458-20083477 Msa0061630:intron 30.0%
TATTAATCGGTTACATTACC+TGG + chr1_2:20083518-20083537 None:intergenic 30.0%
AACTTAACAAACTAGTGTGT+TGG + chr1_2:20083647-20083666 None:intergenic 30.0%
!!! TTCCAAGTTTTAAAGCTTGA+TGG - chr1_2:20083789-20083808 Msa0061630:intron 30.0%
!! TTCCATCAAGCTTTAAAACT+TGG + chr1_2:20083794-20083813 None:intergenic 30.0%
!!! CTTTGTTTTTCTTCTGACAT+CGG - chr1_2:20083829-20083848 Msa0061630:intron 30.0%
!! TTTGTTTTTCTTCTGACATC+GGG - chr1_2:20083830-20083849 Msa0061630:intron 30.0%
ACATGTTCTTCAATTAGATC+TGG + chr1_2:20083864-20083883 None:intergenic 30.0%
! TTTACTTCAATTTTTCTGGG+AGG - chr1_2:20083989-20084008 Msa0061630:CDS 30.0%
! TCAAGAAGTATATTAGACTG+GGG - chr1_2:20084102-20084121 Msa0061630:intron 30.0%
TTTATAGGGTAACCCTAATA+TGG + chr1_2:20084269-20084288 None:intergenic 30.0%
!! GTTTCGTATTTGGAATTTTC+GGG + chr1_2:20084298-20084317 None:intergenic 30.0%
TTTAACACGAGTTTCGTATT+TGG + chr1_2:20084308-20084327 None:intergenic 30.0%
AAAATTGTTTACCCTGAATC+TGG - chr1_2:20084325-20084344 Msa0061630:intron 30.0%
! TTGATTTGAATGCTGAGTAT+TGG - chr1_2:20084538-20084557 Msa0061630:intron 30.0%
! AGTTTTACAACTCTTGAATC+AGG + chr1_2:20084944-20084963 None:intergenic 30.0%
GAAAAAGAAAGACTTAACGA+AGG - chr1_2:20085039-20085058 Msa0061630:intron 30.0%
! TTGCTGTTGTATGAAGATTA+AGG - chr1_2:20085110-20085129 Msa0061630:intron 30.0%
TGCTGTTGTATGAAGATTAA+GGG - chr1_2:20085111-20085130 Msa0061630:intron 30.0%
! CTTCTTAAACTTGCTTCTAT+TGG - chr1_2:20085188-20085207 Msa0061630:intron 30.0%
! TTTCATGATATCTGGAATGA+AGG - chr1_2:20085230-20085249 Msa0061630:intron 30.0%
! TTCATGATATCTGGAATGAA+GGG - chr1_2:20085231-20085250 Msa0061630:intron 30.0%
! GAAACATCAATGTTCTTTTC+TGG - chr1_2:20085359-20085378 Msa0061630:intron 30.0%
! GCTAACAATTTTCTCAATTC+AGG - chr1_2:20085750-20085769 Msa0061630:intron 30.0%
TTCCATACGATATTGAACAT+AGG - chr1_2:20085776-20085795 Msa0061630:intron 30.0%
AACCTATGTTCAATATCGTA+TGG + chr1_2:20085781-20085800 None:intergenic 30.0%
CACTTTCTCACTAACAAATT+AGG - chr1_2:20085847-20085866 Msa0061630:intron 30.0%
ACAGATGGAGATAATATCTA+CGG + chr1_2:20086030-20086049 None:intergenic 30.0%
AAACATACAACAGAAACAGA+TGG + chr1_2:20086045-20086064 None:intergenic 30.0%
!! ATCTGTTTCTGTTGTATGTT+TGG - chr1_2:20086044-20086063 Msa0061630:intron 30.0%
!! AGTTTTGACCTATGGAAAAT+GGG + chr1_2:20086075-20086094 None:intergenic 30.0%
!! AAGTTTTGACCTATGGAAAA+TGG + chr1_2:20086076-20086095 None:intergenic 30.0%
!!! TCTCGTTTTTTATCCATCTT+AGG - chr1_2:20086199-20086218 Msa0061630:intron 30.0%
CCTGTTAAACAAACATGAAT+AGG + chr1_2:20086281-20086300 None:intergenic 30.0%
CCTATTCATGTTTGTTTAAC+AGG - chr1_2:20086278-20086297 Msa0061630:CDS 30.0%
TGTTTGTTTAACAGGAGAAT+AGG - chr1_2:20086286-20086305 Msa0061630:CDS 30.0%
!!! ATGCACTTGCTTTTTGAAAA+TGG + chr1_2:20086338-20086357 None:intergenic 30.0%
TTAAGCTCAAATGATTAACG+AGG - chr1_2:20086371-20086390 Msa0061630:CDS 30.0%
! ATTTTACATGCTGCATAACA+TGG + chr1_2:20086439-20086458 None:intergenic 30.0%
!!! TTTGTGTTTTGGGGTTTAAG+GGG + chr1_2:20078581-20078600 None:intergenic 35.0%
CACAAAAATCGTTTCTTCCA+TGG - chr1_2:20078595-20078614 Msa0061630:three_prime_UTR 35.0%
! CATCGTTGTTGTTGAGAATT+GGG + chr1_2:20078816-20078835 None:intergenic 35.0%
! TCATCGTTGTTGTTGAGAAT+TGG + chr1_2:20078817-20078836 None:intergenic 35.0%
TTAAACTTCATTCTCCCCTT+CGG + chr1_2:20078907-20078926 None:intergenic 35.0%
AATGAAGTTTAAGGAGGAAG+AGG - chr1_2:20078915-20078934 Msa0061630:three_prime_UTR 35.0%
ATCAGAAGTCTTTGTCTGTT+GGG - chr1_2:20079052-20079071 Msa0061630:CDS 35.0%
TCTTTGTCTGTTGGGATTAT+TGG - chr1_2:20079060-20079079 Msa0061630:CDS 35.0%
CTCTCACTAATTATATGGTG+AGG - chr1_2:20079106-20079125 Msa0061630:intron 35.0%
AGAGAGCTTATGAAAACATG+AGG - chr1_2:20079276-20079295 Msa0061630:intron 35.0%
GAGAGCTTATGAAAACATGA+GGG - chr1_2:20079277-20079296 Msa0061630:intron 35.0%
!!! GATAAACCATTTTTTGGTGG+GGG + chr1_2:20079669-20079688 None:intergenic 35.0%
AGCAAAGGAAATACAATCAG+GGG + chr1_2:20079724-20079743 None:intergenic 35.0%
ACGAAAAACTAGAAACCTGT+TGG + chr1_2:20079776-20079795 None:intergenic 35.0%
! TGGGGAAGCTTTTCTTTTAT+TGG + chr1_2:20079838-20079857 None:intergenic 35.0%
ATCCACTCCAAAAATTTGGT+GGG + chr1_2:20079857-20079876 None:intergenic 35.0%
AATCCACTCCAAAAATTTGG+TGG + chr1_2:20079858-20079877 None:intergenic 35.0%
! CATTATCTAAAGTGCCCTTT+AGG - chr1_2:20079980-20079999 Msa0061630:intron 35.0%
ACAGAAGCCCTTACTTAAAT+TGG + chr1_2:20080142-20080161 None:intergenic 35.0%
!! GCTATTTTATTATCTCTCCC+AGG - chr1_2:20080273-20080292 Msa0061630:intron 35.0%
TCTTCCAAACACACCTAAAT+GGG - chr1_2:20080336-20080355 Msa0061630:CDS 35.0%
CACCTAAATGGGGTTTAAAT+AGG - chr1_2:20080347-20080366 Msa0061630:CDS 35.0%
TGCCTATTTAAACCCCATTT+AGG + chr1_2:20080352-20080371 None:intergenic 35.0%
TACAAGGAGAGACTTACAAA+GGG + chr1_2:20080454-20080473 None:intergenic 35.0%
ATACAAGGAGAGACTTACAA+AGG + chr1_2:20080455-20080474 None:intergenic 35.0%
CTATTGCACACAATGATACA+AGG + chr1_2:20080470-20080489 None:intergenic 35.0%
GGAACTGAGTTCAATTTATG+TGG - chr1_2:20080512-20080531 Msa0061630:intron 35.0%
TATAGAGTAGCAGATACCTT+TGG - chr1_2:20080638-20080657 Msa0061630:intron 35.0%
ATAGAGTAGCAGATACCTTT+GGG - chr1_2:20080639-20080658 Msa0061630:intron 35.0%
ACAAAGAAACCTAATCCCAA+AGG + chr1_2:20080657-20080676 None:intergenic 35.0%
CACATATTAGACACACATAC+GGG - chr1_2:20080751-20080770 Msa0061630:intron 35.0%
ACATATTAGACACACATACG+GGG - chr1_2:20080752-20080771 Msa0061630:intron 35.0%
GGTTAAAGATTTGTCTAGGA+AGG - chr1_2:20080774-20080793 Msa0061630:intron 35.0%
CCAAATCCTTTCCATTATTG+AGG + chr1_2:20080824-20080843 None:intergenic 35.0%
! CCTCAATAATGGAAAGGATT+TGG - chr1_2:20080821-20080840 Msa0061630:intron 35.0%
TGTTGGTATAGAGGTGAAAA+GGG - chr1_2:20080943-20080962 Msa0061630:intron 35.0%
!! TTTAATAGGGAGCATTTGAG+AGG - chr1_2:20081054-20081073 Msa0061630:intron 35.0%
AACTAATAGATCCCTTTCTG+AGG + chr1_2:20081104-20081123 None:intergenic 35.0%
ATCTCTGGTTGTAACTTATG+AGG - chr1_2:20081232-20081251 Msa0061630:intron 35.0%
! ATCATCATAGGTTGGAACAA+AGG - chr1_2:20081345-20081364 Msa0061630:intron 35.0%
AGCCAAGTTACTCACAATTT+GGG + chr1_2:20081440-20081459 None:intergenic 35.0%
TTCCATCTTAGTCAGAATAC+GGG - chr1_2:20081584-20081603 Msa0061630:intron 35.0%
CATACATCTGTTTGATTGCA+TGG - chr1_2:20081607-20081626 Msa0061630:intron 35.0%
!! ATTTGTGCTTTAGAACTGGT+AGG - chr1_2:20081824-20081843 Msa0061630:intron 35.0%
!! TTTGTGCTTTAGAACTGGTA+GGG - chr1_2:20081825-20081844 Msa0061630:intron 35.0%
ATTCAAGAAAAAAGCAGCAG+TGG + chr1_2:20082166-20082185 None:intergenic 35.0%
AGAGATCATGTAAACCTGTA+TGG - chr1_2:20082207-20082226 Msa0061630:intron 35.0%
ATCATGTAAACCTGTATGGT+AGG - chr1_2:20082211-20082230 Msa0061630:intron 35.0%
AACCAAACACAGATGACAAA+AGG + chr1_2:20082328-20082347 None:intergenic 35.0%
CTAAAGTAGTGAATCTCCAA+AGG + chr1_2:20082380-20082399 None:intergenic 35.0%
ATTTGACAACGCAGTTTACA+TGG - chr1_2:20082445-20082464 Msa0061630:intron 35.0%
!!! AGTGTTTTTTTGATACGCCA+GGG - chr1_2:20082502-20082521 Msa0061630:intron 35.0%
TTTACCTGGTGATATGTCTA+TGG + chr1_2:20082635-20082654 None:intergenic 35.0%
AATCTGAGGAAATACTCTGA+TGG - chr1_2:20082666-20082685 Msa0061630:intron 35.0%
TCACGAATAAGGAGATCATA+TGG + chr1_2:20082739-20082758 None:intergenic 35.0%
AAGAGATATTAGATCCAGTG+TGG + chr1_2:20082762-20082781 None:intergenic 35.0%
! GTAGGAATTAGGCTTTTCTT+TGG - chr1_2:20082960-20082979 Msa0061630:intron 35.0%
TAGAAGATATCAACATCGTG+CGG + chr1_2:20083028-20083047 None:intergenic 35.0%
ATCTGGTATGCTCACAAATA+AGG - chr1_2:20083281-20083300 Msa0061630:intron 35.0%
TCCAATGGTCAAATATAGTG+TGG - chr1_2:20083325-20083344 Msa0061630:intron 35.0%
ACCACACTATATTTGACCAT+TGG + chr1_2:20083329-20083348 None:intergenic 35.0%
TCAAATATAGTGTGGTACAC+CGG - chr1_2:20083333-20083352 Msa0061630:intron 35.0%
! TTCTAAAGGGTGCATATTAG+GGG + chr1_2:20083456-20083475 None:intergenic 35.0%
! TGGTTGGACCATTTTCTAAA+GGG + chr1_2:20083469-20083488 None:intergenic 35.0%
! ATGGTTGGACCATTTTCTAA+AGG + chr1_2:20083470-20083489 None:intergenic 35.0%
TTTAGAAAATGGTCCAACCA+TGG - chr1_2:20083469-20083488 Msa0061630:intron 35.0%
AGATAGAGGCAGCAATAAAT+GGG + chr1_2:20083584-20083603 None:intergenic 35.0%
TTAACAAACTAGTGTGTTGG+AGG + chr1_2:20083644-20083663 None:intergenic 35.0%
TGAGAGTTAGATAAATCCGT+CGG - chr1_2:20083904-20083923 Msa0061630:intron 35.0%
TGTTATTCTGCTCAACTTGT+CGG + chr1_2:20084164-20084183 None:intergenic 35.0%
AATTTGATACAGGCAATAGC+CGG - chr1_2:20084201-20084220 Msa0061630:intron 35.0%
!! CTTTTTAAAGGGTCCAAACA+TGG + chr1_2:20084242-20084261 None:intergenic 35.0%
! TGTTTGGACCCTTTAAAAAG+AGG - chr1_2:20084242-20084261 Msa0061630:intron 35.0%
! TAGGCTTTTTACCAGATTCA+GGG + chr1_2:20084339-20084358 None:intergenic 35.0%
! ATAGGCTTTTTACCAGATTC+AGG + chr1_2:20084340-20084359 None:intergenic 35.0%
! GCTTCATTTGCCACTTAAAA+TGG - chr1_2:20084387-20084406 Msa0061630:intron 35.0%
! CTCTTGCTAACCATTTTAAG+TGG + chr1_2:20084400-20084419 None:intergenic 35.0%
ATCAATGACTGACTAAGATG+AGG + chr1_2:20084590-20084609 None:intergenic 35.0%
CACTAGGGATTATTGTATGA+AGG + chr1_2:20084674-20084693 None:intergenic 35.0%
AATCCCTAGTGTGATGTATT+AGG - chr1_2:20084683-20084702 Msa0061630:intron 35.0%
ATCCCTAGTGTGATGTATTA+GGG - chr1_2:20084684-20084703 Msa0061630:intron 35.0%
! TATGAAGCACTAACACTCAT+AGG - chr1_2:20084735-20084754 Msa0061630:intron 35.0%
GAATGTATAACACTTGTCTG+AGG + chr1_2:20084837-20084856 None:intergenic 35.0%
TTGAATCAGGCCTATATTGA+TGG + chr1_2:20084931-20084950 None:intergenic 35.0%
TGTAAAACTGATCAAGCGAA+TGG - chr1_2:20084955-20084974 Msa0061630:intron 35.0%
GTAAAACTGATCAAGCGAAT+GGG - chr1_2:20084956-20084975 Msa0061630:intron 35.0%
!!! AACTCGCTTTTGATTTGGAA+TGG + chr1_2:20084990-20085009 None:intergenic 35.0%
!! CACAAAACTCGCTTTTGATT+TGG + chr1_2:20084995-20085014 None:intergenic 35.0%
AAGATCTTCCTGGATTTGAA+AGG - chr1_2:20085077-20085096 Msa0061630:intron 35.0%
ATGAAGATTAAGGGAAACAC+TGG - chr1_2:20085120-20085139 Msa0061630:intron 35.0%
TTTAGGCGTTTCATGATATC+TGG - chr1_2:20085222-20085241 Msa0061630:intron 35.0%
! TCATGATATCTGGAATGAAG+GGG - chr1_2:20085232-20085251 Msa0061630:intron 35.0%
AGATTTGACTCAGTTCTTGA+TGG - chr1_2:20085266-20085285 Msa0061630:intron 35.0%
TTATGCAATAGGCAGTAGAA+CGG - chr1_2:20085546-20085565 Msa0061630:intron 35.0%
CAACAATTACCTGATGTACA+TGG + chr1_2:20085655-20085674 None:intergenic 35.0%
ATCTAATCCTACAGCATACT+TGG + chr1_2:20085716-20085735 None:intergenic 35.0%
!! TTGAACATAGGTTGATTGAC+TGG - chr1_2:20085788-20085807 Msa0061630:intron 35.0%
!! ATACTCGAAGTTTTGACCTA+TGG + chr1_2:20086083-20086102 None:intergenic 35.0%
TTCGAGTATGAAGATTAGAC+AGG - chr1_2:20086094-20086113 Msa0061630:intron 35.0%
!! AGATGGAATTGATGACCTTT+TGG - chr1_2:20086142-20086161 Msa0061630:intron 35.0%
TAAGAGGTTCTATCCTAAGA+TGG + chr1_2:20086215-20086234 None:intergenic 35.0%
TAGAAGCTAATGAAGAGCTA+AGG - chr1_2:20086311-20086330 Msa0061630:CDS 35.0%
ATTAACGAGGCGAATATCTT+TGG - chr1_2:20086384-20086403 Msa0061630:CDS 35.0%
ATAAGTGCTATGGAAGAAAC+AGG - chr1_2:20086545-20086564 Msa0061630:CDS 35.0%
! TAAAAGGCACAACAAATTGC+CGG + chr1_2:20086594-20086613 None:intergenic 35.0%
! GCCTTTTACTATTTGATTGC+CGG - chr1_2:20086606-20086625 Msa0061630:CDS 35.0%
TCCGGCAATCAAATAGTAAA+AGG + chr1_2:20086610-20086629 None:intergenic 35.0%
AAAATTGAGTTCCTAGACTC+CGG + chr1_2:20086628-20086647 None:intergenic 35.0%
! AAAAACACAACTAGGGCATT+TGG - chr1_2:20086740-20086759 Msa0061630:exon 35.0%
GGCATTTGGTTGTATGAAAA+TGG - chr1_2:20086754-20086773 Msa0061630:five_prime_UTR 35.0%
AAAATGGTGAGATACGAGTT+TGG - chr1_2:20086770-20086789 Msa0061630:five_prime_UTR 35.0%
CTACTATGCAAGAAGAACCA+TGG + chr1_2:20078615-20078634 None:intergenic 40.0%
!!! ATTGTGGTGGTGGTGATTTT+GGG + chr1_2:20078697-20078716 None:intergenic 40.0%
TTCGTAGTGAGAACTATCGA+AGG + chr1_2:20078791-20078810 None:intergenic 40.0%
TTCTTATTCCACGTCACCTT+CGG + chr1_2:20078844-20078863 None:intergenic 40.0%
GGAATAAGAAATACCGAGAC+CGG - chr1_2:20078854-20078873 Msa0061630:three_prime_UTR 40.0%
GAAGGGGAGAATGAAGTTTA+AGG - chr1_2:20078906-20078925 Msa0061630:three_prime_UTR 40.0%
GAGGAGAAAGATGAAGATGT+GGG - chr1_2:20079012-20079031 Msa0061630:CDS 40.0%
GATCAGAAGTCTTTGTCTGT+TGG - chr1_2:20079051-20079070 Msa0061630:CDS 40.0%
! ATTATTGGTGCTCCTAATGC+TGG - chr1_2:20079075-20079094 Msa0061630:intron 40.0%
AGAGAAGATTTGCCAGCATT+AGG + chr1_2:20079090-20079109 None:intergenic 40.0%
GTTATGTTATGTTGTAGCCG+AGG - chr1_2:20079183-20079202 Msa0061630:intron 40.0%
AGCTTATGAAAACATGAGGG+TGG - chr1_2:20079280-20079299 Msa0061630:intron 40.0%
TGTGTGTTCATAAGCTATGC+AGG + chr1_2:20079462-20079481 None:intergenic 40.0%
! TCGGTGTTTGTGCTAAACAT+TGG - chr1_2:20079635-20079654 Msa0061630:intron 40.0%
TTAACTCCCCCACCAAAAAA+TGG - chr1_2:20079660-20079679 Msa0061630:intron 40.0%
GCAAAGGAAATACAATCAGG+GGG + chr1_2:20079723-20079742 None:intergenic 40.0%
! AAGCTTCCCCACCAAATTTT+TGG - chr1_2:20079847-20079866 Msa0061630:intron 40.0%
! TCCACTCCAAAAATTTGGTG+GGG + chr1_2:20079856-20079875 None:intergenic 40.0%
! TCTAAAGTGCCCTTTAGGAA+TGG - chr1_2:20079985-20080004 Msa0061630:intron 40.0%
! CTAAAGTGCCCTTTAGGAAT+GGG - chr1_2:20079986-20080005 Msa0061630:intron 40.0%
TCATGGAACCCATTCCTAAA+GGG + chr1_2:20079997-20080016 None:intergenic 40.0%
!! ATTATTTAGGGAGAGTGCCT+TGG - chr1_2:20080112-20080131 Msa0061630:CDS 40.0%
!! TTATTTAGGGAGAGTGCCTT+GGG - chr1_2:20080113-20080132 Msa0061630:CDS 40.0%
ACACTTGTGTATATGTCCCT+GGG + chr1_2:20080293-20080312 None:intergenic 40.0%
AACACTTGTGTATATGTCCC+TGG + chr1_2:20080294-20080313 None:intergenic 40.0%
CTCTTCCAAACACACCTAAA+TGG - chr1_2:20080335-20080354 Msa0061630:CDS 40.0%
CTTCCAAACACACCTAAATG+GGG - chr1_2:20080337-20080356 Msa0061630:CDS 40.0%
AAACCCCATTTAGGTGTGTT+TGG + chr1_2:20080343-20080362 None:intergenic 40.0%
!! TAGCAGATACCTTTGGGATT+AGG - chr1_2:20080645-20080664 Msa0061630:intron 40.0%
GAGACACTTGTCTAAGTTGT+TGG + chr1_2:20080682-20080701 None:intergenic 40.0%
GTGTGTCTAATATGTGTCCA+AGG + chr1_2:20080747-20080766 None:intergenic 40.0%
CATATTAGACACACATACGG+GGG - chr1_2:20080753-20080772 Msa0061630:intron 40.0%
GATTTGTCTAGGAAGGGATT+TGG - chr1_2:20080781-20080800 Msa0061630:intron 40.0%
TGAGATTCCTCCCTCAATAA+TGG - chr1_2:20080810-20080829 Msa0061630:intron 40.0%
! TTCCTCCCTCAATAATGGAA+AGG - chr1_2:20080815-20080834 Msa0061630:intron 40.0%
ATCCTTTCCATTATTGAGGG+AGG + chr1_2:20080820-20080839 None:intergenic 40.0%
TGAATAGTCCACACCTTCTT+AGG - chr1_2:20080913-20080932 Msa0061630:intron 40.0%
AGTTTAGACCTAAGAAGGTG+TGG + chr1_2:20080924-20080943 None:intergenic 40.0%
CCAACAGTTTAGACCTAAGA+AGG + chr1_2:20080929-20080948 None:intergenic 40.0%
CCTTCTTAGGTCTAAACTGT+TGG - chr1_2:20080926-20080945 Msa0061630:intron 40.0%
GGTCTAAACTGTTGGTATAG+AGG - chr1_2:20080934-20080953 Msa0061630:intron 40.0%
CTGTTGGTATAGAGGTGAAA+AGG - chr1_2:20080942-20080961 Msa0061630:intron 40.0%
ATAGAGGTGAAAAGGGTGAT+AGG - chr1_2:20080950-20080969 Msa0061630:intron 40.0%
GCAATGAACTATCATCTGCT+TGG - chr1_2:20081000-20081019 Msa0061630:intron 40.0%
ATGAACTATCATCTGCTTGG+AGG - chr1_2:20081003-20081022 Msa0061630:intron 40.0%
! AAGTTGGTTCTTCCTCAGAA+AGG - chr1_2:20081089-20081108 Msa0061630:intron 40.0%
! AGTTGGTTCTTCCTCAGAAA+GGG - chr1_2:20081090-20081109 Msa0061630:intron 40.0%
! ATCATAGGTTGGAACAAAGG+TGG - chr1_2:20081348-20081367 Msa0061630:intron 40.0%
ACCACAACTCATGAAGTTGT+GGG - chr1_2:20081394-20081413 Msa0061630:intron 40.0%
CACCCAAATTGTGAGTAACT+TGG - chr1_2:20081435-20081454 Msa0061630:intron 40.0%
CAGCCAAGTTACTCACAATT+TGG + chr1_2:20081441-20081460 None:intergenic 40.0%
GAATGCTGAGGTTACAATAG+AGG - chr1_2:20081489-20081508 Msa0061630:intron 40.0%
ACCGTCGATATATGCATGAT+TGG - chr1_2:20081714-20081733 Msa0061630:intron 40.0%
GCCAATCATGCATATATCGA+CGG + chr1_2:20081718-20081737 None:intergenic 40.0%
! TGATTGGCTCCAATGAAACA+TGG - chr1_2:20081730-20081749 Msa0061630:intron 40.0%
GTAGGCATCCTGTTAAAATC+CGG - chr1_2:20082229-20082248 Msa0061630:intron 40.0%
!! CAGCAATACCGGATTTTAAC+AGG + chr1_2:20082240-20082259 None:intergenic 40.0%
ACAAAAGGCAAGAACTACAC+GGG + chr1_2:20082313-20082332 None:intergenic 40.0%
GACAAAAGGCAAGAACTACA+CGG + chr1_2:20082314-20082333 None:intergenic 40.0%
! TGCCTTTTGTCATCTGTGTT+TGG - chr1_2:20082323-20082342 Msa0061630:intron 40.0%
!!! CAGTGTTTTTTTGATACGCC+AGG - chr1_2:20082501-20082520 Msa0061630:intron 40.0%
!! TTGTAGCGGATTCCCTTATA+AGG - chr1_2:20082536-20082555 Msa0061630:intron 40.0%
ATTCCCTTATAAGGATGCCA+AGG - chr1_2:20082545-20082564 Msa0061630:intron 40.0%
!! TGTTGAAAGTGCTTGGAGTT+CGG - chr1_2:20082572-20082591 Msa0061630:intron 40.0%
ATGTCCATAGACATATCACC+AGG - chr1_2:20082628-20082647 Msa0061630:intron 40.0%
!! ATACTCTGATGGTGGATTCT+AGG - chr1_2:20082677-20082696 Msa0061630:intron 40.0%
!! TACTCTGATGGTGGATTCTA+GGG - chr1_2:20082678-20082697 Msa0061630:intron 40.0%
AGATCTGAAGGCAAAATGAC+TGG - chr1_2:20083101-20083120 Msa0061630:intron 40.0%
GCAAAATGACTGGAACTTGT+GGG - chr1_2:20083111-20083130 Msa0061630:intron 40.0%
CAAAATGACTGGAACTTGTG+GGG - chr1_2:20083112-20083131 Msa0061630:intron 40.0%
!!! GGGGTTTATTTTGTGAACTG+AGG - chr1_2:20083131-20083150 Msa0061630:intron 40.0%
! TCTAAAGGGTGCATATTAGG+GGG + chr1_2:20083455-20083474 None:intergenic 40.0%
GAGATAGAGGCAGCAATAAA+TGG + chr1_2:20083585-20083604 None:intergenic 40.0%
TATCTCCAAGTCCAATTCCA+TGG - chr1_2:20083599-20083618 Msa0061630:intron 40.0%
TGTGTTGGAGGAATGACAAA+GGG + chr1_2:20083632-20083651 None:intergenic 40.0%
! AAAGTGGAAACAGTGCTACT+TGG + chr1_2:20083751-20083770 None:intergenic 40.0%
TAGATAAATCCGTCGGTGAT+CGG - chr1_2:20083911-20083930 Msa0061630:intron 40.0%
!! CTTCAATTTTTCTGGGAGGT+TGG - chr1_2:20083993-20084012 Msa0061630:CDS 40.0%
!! AATAGCCGGTTAAGTTGAAG+AGG - chr1_2:20084215-20084234 Msa0061630:intron 40.0%
ATGGACCTCTTCAACTTAAC+CGG + chr1_2:20084223-20084242 None:intergenic 40.0%
AAGTTGAAGAGGTCCATGTT+TGG - chr1_2:20084226-20084245 Msa0061630:intron 40.0%
CGTCTATAACCATCTTTGCT+TGG + chr1_2:20084464-20084483 None:intergenic 40.0%
GCTTAACTTATAGTTGGGCA+TGG - chr1_2:20084629-20084648 Msa0061630:intron 40.0%
CACCCTAATACATCACACTA+GGG + chr1_2:20084689-20084708 None:intergenic 40.0%
ACACCCTAATACATCACACT+AGG + chr1_2:20084690-20084709 None:intergenic 40.0%
!! TGATGTATTAGGGTGTCGAT+GGG - chr1_2:20084694-20084713 Msa0061630:intron 40.0%
GTTAGTGCTTCATACTGCTT+GGG + chr1_2:20084729-20084748 None:intergenic 40.0%
TGTTAGTGCTTCATACTGCT+TGG + chr1_2:20084730-20084749 None:intergenic 40.0%
GCACTAACACTCATAGGTTT+AGG - chr1_2:20084741-20084760 Msa0061630:intron 40.0%
TTTGCAACATGTCGAACATG+TGG + chr1_2:20084772-20084791 None:intergenic 40.0%
CTAACACGCGTTGTATAAAC+AGG + chr1_2:20084803-20084822 None:intergenic 40.0%
GAAGAATTCGAAGATCTTCC+TGG - chr1_2:20085067-20085086 Msa0061630:intron 40.0%
CTTCCTGGATTTGAAAGGTA+AGG - chr1_2:20085082-20085101 Msa0061630:intron 40.0%
AGACCTTACCTTTCAAATCC+AGG + chr1_2:20085088-20085107 None:intergenic 40.0%
! CATGATATCTGGAATGAAGG+GGG - chr1_2:20085233-20085252 Msa0061630:intron 40.0%
! TCAATGTTCTTTTCTGGGTG+TGG - chr1_2:20085365-20085384 Msa0061630:intron 40.0%
GACACTCCAAGACTTAACAT+TGG - chr1_2:20085509-20085528 Msa0061630:intron 40.0%
GTAAATGGATCTTCTTCCCA+GGG + chr1_2:20085572-20085591 None:intergenic 40.0%
TTTCATAACTTCCTCGGTCA+TGG + chr1_2:20085594-20085613 None:intergenic 40.0%
CATTAGAAGTTGTGCGTGAA+AGG - chr1_2:20085621-20085640 Msa0061630:intron 40.0%
ATTTGTGCCAAGTATGCTGT+AGG - chr1_2:20085706-20085725 Msa0061630:intron 40.0%
GTCTCTTCTTTGAACTCAGA+TGG - chr1_2:20086125-20086144 Msa0061630:intron 40.0%
AACATGAATAGGGGATGAGA+GGG + chr1_2:20086270-20086289 None:intergenic 40.0%
AAACATGAATAGGGGATGAG+AGG + chr1_2:20086271-20086290 None:intergenic 40.0%
AACATGGTGTGTGGCAAAAA+AGG + chr1_2:20086423-20086442 None:intergenic 40.0%
TGCAGCATGTAAAATGCCAA+AGG - chr1_2:20086444-20086463 Msa0061630:CDS 40.0%
GCAGCATGTAAAATGCCAAA+GGG - chr1_2:20086445-20086464 Msa0061630:CDS 40.0%
CAGCATGTAAAATGCCAAAG+GGG - chr1_2:20086446-20086465 Msa0061630:CDS 40.0%
! AAGAAACAGGTTGAGTTCGT+TGG - chr1_2:20086558-20086577 Msa0061630:CDS 40.0%
!!! GATTGTGGTGGTGGTGATTT+TGG + chr1_2:20078698-20078717 None:intergenic 45.0%
!! TGAATGTTCGGGTTGAGGAT+CGG + chr1_2:20078761-20078780 None:intergenic 45.0%
AAGGTTGCGTCTGAATGTTC+GGG + chr1_2:20078772-20078791 None:intergenic 45.0%
GAAGGTTGCGTCTGAATGTT+CGG + chr1_2:20078773-20078792 None:intergenic 45.0%
CAACAACGATGAAAAGCCGA+AGG - chr1_2:20078825-20078844 Msa0061630:three_prime_UTR 45.0%
TAAGAAATACCGAGACCGGA+CGG - chr1_2:20078858-20078877 Msa0061630:three_prime_UTR 45.0%
GGGGAGAATGAAGTTTAAGG+AGG - chr1_2:20078909-20078928 Msa0061630:three_prime_UTR 45.0%
GAAGTTTAAGGAGGAAGAGG+AGG - chr1_2:20078918-20078937 Msa0061630:three_prime_UTR 45.0%
AGAGGAGGAGAGGAAAACAA+AGG - chr1_2:20078933-20078952 Msa0061630:three_prime_UTR 45.0%
!! GAAAACAAAGGCGCTTGAGA+AGG - chr1_2:20078945-20078964 Msa0061630:three_prime_UTR 45.0%
GGAGGAGAAAGATGAAGATG+TGG - chr1_2:20079011-20079030 Msa0061630:CDS 45.0%
! AGATGTGGGTGTTGTGAAAG+AGG - chr1_2:20079026-20079045 Msa0061630:CDS 45.0%
TGGAACACTATATCGACGCA+CGG - chr1_2:20079300-20079319 Msa0061630:intron 45.0%
!!! CACACAGCTTTTAGCTTACG+TGG - chr1_2:20079478-20079497 Msa0061630:intron 45.0%
TCCAAACAGAGCCATCAACA+TGG - chr1_2:20079573-20079592 Msa0061630:CDS 45.0%
!! TCCCCACCAAATTTTTGGAG+TGG - chr1_2:20079852-20079871 Msa0061630:intron 45.0%
CTCATGGAACCCATTCCTAA+AGG + chr1_2:20079998-20080017 None:intergenic 45.0%
GCTTATACGTGTCCACAAGT+TGG + chr1_2:20080255-20080274 None:intergenic 45.0%
TCTAGATGAAGTTGAGGTGC+AGG - chr1_2:20080491-20080510 Msa0061630:intron 45.0%
AACACACCTGAGATACTCCT+TGG - chr1_2:20080727-20080746 Msa0061630:intron 45.0%
!! ATGTGTCCAAGGAGTATCTC+AGG + chr1_2:20080736-20080755 None:intergenic 45.0%
CGGGGGTTAAAGATTTGTCT+AGG - chr1_2:20080770-20080789 Msa0061630:intron 45.0%
!! TCTCTAAGAGTGTTCTCCAG+TGG - chr1_2:20080855-20080874 Msa0061630:intron 45.0%
!! CTCTAAGAGTGTTCTCCAGT+GGG - chr1_2:20080856-20080875 Msa0061630:intron 45.0%
!! TCTAAGAGTGTTCTCCAGTG+GGG - chr1_2:20080857-20080876 Msa0061630:intron 45.0%
GGAACAAGCTCCTTACAAGA+TGG + chr1_2:20081138-20081157 None:intergenic 45.0%
GAGGTTATCAAGATCGTGAG+TGG + chr1_2:20081206-20081225 None:intergenic 45.0%
GATAACCTCTTCGTGATCTC+TGG - chr1_2:20081217-20081236 Msa0061630:intron 45.0%
TACAACCAGAGATCACGAAG+AGG + chr1_2:20081225-20081244 None:intergenic 45.0%
! ATAGGTTGGAACAAAGGTGG+CGG - chr1_2:20081351-20081370 Msa0061630:intron 45.0%
CACCACAACTCATGAAGTTG+TGG - chr1_2:20081393-20081412 Msa0061630:intron 45.0%
GTGTGTAAAAGGGAATGCTG+AGG - chr1_2:20081477-20081496 Msa0061630:intron 45.0%
TGCCCGTATTCTGACTAAGA+TGG + chr1_2:20081589-20081608 None:intergenic 45.0%
TAACAGGATGCCTACCATAC+AGG + chr1_2:20082224-20082243 None:intergenic 45.0%
ATTTGGTAGGGCAGCAATAC+CGG + chr1_2:20082251-20082270 None:intergenic 45.0%
GAGCCTTGGCATCCTTATAA+GGG + chr1_2:20082551-20082570 None:intergenic 45.0%
CTGAGGAAATACTCTGATGG+TGG - chr1_2:20082669-20082688 Msa0061630:intron 45.0%
GAGGTGTACCACTATACCAT+TGG - chr1_2:20082702-20082721 Msa0061630:intron 45.0%
ATCCAGTGTGGTCACGAATA+AGG + chr1_2:20082750-20082769 None:intergenic 45.0%
GGCAAAATGACTGGAACTTG+TGG - chr1_2:20083110-20083129 Msa0061630:intron 45.0%
GTGGCGAAATGAGATGTGTT+AGG - chr1_2:20083223-20083242 Msa0061630:intron 45.0%
GCGAAATGAGATGTGTTAGG+TGG - chr1_2:20083226-20083245 Msa0061630:intron 45.0%
! GTTAGGTGGAGAGAAAGTAC+TGG - chr1_2:20083240-20083259 Msa0061630:intron 45.0%
!! AGTAGGTGGATTCTAAGGTG+GGG + chr1_2:20083377-20083396 None:intergenic 45.0%
!! GAGTAGGTGGATTCTAAGGT+GGG + chr1_2:20083378-20083397 None:intergenic 45.0%
! AGAGTAGGTGGATTCTAAGG+TGG + chr1_2:20083379-20083398 None:intergenic 45.0%
ACCTTAGAATCCACCTACTC+TGG - chr1_2:20083378-20083397 Msa0061630:intron 45.0%
! TCCAGAGTAGGTGGATTCTA+AGG + chr1_2:20083382-20083401 None:intergenic 45.0%
AAACACGACTGTTCCAGAGT+AGG + chr1_2:20083394-20083413 None:intergenic 45.0%
TGAACTAAGAGGTCCATGGT+TGG + chr1_2:20083485-20083504 None:intergenic 45.0%
AGGTTGAACTAAGAGGTCCA+TGG + chr1_2:20083489-20083508 None:intergenic 45.0%
GGAATTGGACTTGGAGATAG+AGG + chr1_2:20083598-20083617 None:intergenic 45.0%
AGTGACCATGGAATTGGACT+TGG + chr1_2:20083607-20083626 None:intergenic 45.0%
GTGTTGGAGGAATGACAAAG+GGG + chr1_2:20083631-20083650 None:intergenic 45.0%
GTGTGTTGGAGGAATGACAA+AGG + chr1_2:20083633-20083652 None:intergenic 45.0%
!! GGAAACAGTGCTACTTGGTA+AGG + chr1_2:20083746-20083765 None:intergenic 45.0%
!! GTAATGGACGACGATGGATA+CGG - chr1_2:20083938-20083957 Msa0061630:intron 45.0%
! TAATGGACGACGATGGATAC+GGG - chr1_2:20083939-20083958 Msa0061630:intron 45.0%
ATGGTTATAGACGTGTTGCG+TGG - chr1_2:20084471-20084490 Msa0061630:intron 45.0%
!! GTGATGTATTAGGGTGTCGA+TGG - chr1_2:20084693-20084712 Msa0061630:intron 45.0%
TGATCAAGCGAATGGGAGAA+CGG - chr1_2:20084963-20084982 Msa0061630:intron 45.0%
!! CTTGGAGTGTCGAAGATAAC+AGG + chr1_2:20085500-20085519 None:intergenic 45.0%
GGTAAATGGATCTTCTTCCC+AGG + chr1_2:20085573-20085592 None:intergenic 45.0%
AGATCCATTTACCATGACCG+AGG - chr1_2:20085580-20085599 Msa0061630:intron 45.0%
ACTTCCTCGGTCATGGTAAA+TGG + chr1_2:20085587-20085606 None:intergenic 45.0%
AGTTGCGAGATGGTTCTCTT+AGG - chr1_2:20085815-20085834 Msa0061630:intron 45.0%
AGGCCAACTCAAGATTCTTG+TGG - chr1_2:20085867-20085886 Msa0061630:intron 45.0%
GGCCAACTCAAGATTCTTGT+GGG - chr1_2:20085868-20085887 Msa0061630:intron 45.0%
GCCAACTCAAGATTCTTGTG+GGG - chr1_2:20085869-20085888 Msa0061630:intron 45.0%
TCCCCACAAGAATCTTGAGT+TGG + chr1_2:20085873-20085892 None:intergenic 45.0%
! GGAAGCGTGGCTCAAAAATT+GGG - chr1_2:20085890-20085909 Msa0061630:intron 45.0%
! TGGTTGTGCCCATTTTCCAT+AGG - chr1_2:20086064-20086083 Msa0061630:intron 45.0%
ACATGAATAGGGGATGAGAG+GGG + chr1_2:20086269-20086288 None:intergenic 45.0%
!! GCAAGTGCATCTAGTTCTTC+AGG - chr1_2:20086348-20086367 Msa0061630:CDS 45.0%
ATGCTGCATAACATGGTGTG+TGG + chr1_2:20086432-20086451 None:intergenic 45.0%
GTGTAATTCACACACCCCTT+TGG + chr1_2:20086463-20086482 None:intergenic 45.0%
CAAAACCTTGCCTGAGAACA+GGG - chr1_2:20086508-20086527 Msa0061630:CDS 45.0%
TCTATGATGACCCTGTTCTC+AGG + chr1_2:20086521-20086540 None:intergenic 45.0%
CTATTTGATTGCCGGAGTCT+AGG - chr1_2:20086614-20086633 Msa0061630:CDS 45.0%
!! TAAACTAATAATAATATAAA+TGG + chr1_2:20081265-20081284 None:intergenic 5.0%
!!! TTTAACTTTATTATATTAAT+CGG + chr1_2:20083531-20083550 None:intergenic 5.0%
! GAAGAAAGCGCGGAAGATTG+TGG + chr1_2:20078713-20078732 None:intergenic 50.0%
!! GAATGTTCGGGTTGAGGATC+GGG + chr1_2:20078760-20078779 None:intergenic 50.0%
ATGAAAAGCCGAAGGTGACG+TGG - chr1_2:20078833-20078852 Msa0061630:three_prime_UTR 50.0%
CGAACACCAGTTTATCCGTC+CGG + chr1_2:20078876-20078895 None:intergenic 50.0%
CGGACGGATAAACTGGTGTT+CGG - chr1_2:20078874-20078893 Msa0061630:three_prime_UTR 50.0%
TTAAGGAGGAAGAGGAGGAG+AGG - chr1_2:20078923-20078942 Msa0061630:three_prime_UTR 50.0%
! TGTGGGTGTTGTGAAAGAGG+AGG - chr1_2:20079029-20079048 Msa0061630:CDS 50.0%
GTTATGTTGTAGCCGAGGTG+AGG - chr1_2:20079188-20079207 Msa0061630:intron 50.0%
TCAACGCAACATCCTCACCT+CGG + chr1_2:20079203-20079222 None:intergenic 50.0%
!! GCCATGTTGATGGCTCTGTT+TGG + chr1_2:20079577-20079596 None:intergenic 50.0%
AGCCATCAACATGGCGATAC+CGG - chr1_2:20079582-20079601 Msa0061630:CDS 50.0%
TCCTTTGCTTTGCTAGCCGA+TGG - chr1_2:20079735-20079754 Msa0061630:CDS 50.0%
! TCCATCGGCTAGCAAAGCAA+AGG + chr1_2:20079739-20079758 None:intergenic 50.0%
ATTCCATATCGGATCCCCAC+TGG + chr1_2:20080874-20080893 None:intergenic 50.0%
GGGGATCCGATATGGAATGA+TGG - chr1_2:20080876-20080895 Msa0061630:intron 50.0%
CTATCATCTGCTTGGAGGTG+TGG - chr1_2:20081008-20081027 Msa0061630:intron 50.0%
GCCCACAACTTCATGAGTTG+TGG + chr1_2:20081398-20081417 None:intergenic 50.0%
!! GTTGTGGGCGTGTTGACTAA+AGG - chr1_2:20081409-20081428 Msa0061630:intron 50.0%
CTACAATTTAGCACGAGCCC+TGG + chr1_2:20082522-20082541 None:intergenic 50.0%
GGGCTCGTGCTAAATTGTAG+CGG - chr1_2:20082522-20082541 Msa0061630:intron 50.0%
CGAGCCTTGGCATCCTTATA+AGG + chr1_2:20082552-20082571 None:intergenic 50.0%
AGCACTTTCAACACGAGCCT+TGG + chr1_2:20082565-20082584 None:intergenic 50.0%
!! AGGCTCGTGTTGAAAGTGCT+TGG - chr1_2:20082565-20082584 Msa0061630:intron 50.0%
!! TGATGGTGGATTCTAGGGTG+AGG - chr1_2:20082683-20082702 Msa0061630:intron 50.0%
CTCCTTATTCGTGACCACAC+TGG - chr1_2:20082745-20082764 Msa0061630:CDS 50.0%
TGGTAGGCGAGAGAAAGAAC+GGG + chr1_2:20082786-20082805 None:intergenic 50.0%
CTGGTAGGCGAGAGAAAGAA+CGG + chr1_2:20082787-20082806 None:intergenic 50.0%
GCAGCGAAATGAGATCTGGT+AGG + chr1_2:20082802-20082821 None:intergenic 50.0%
GTGTGCAGCGAAATGAGATC+TGG + chr1_2:20082806-20082825 None:intergenic 50.0%
GTTGTAGAACAATCGGAGCC+CGG - chr1_2:20083172-20083191 Msa0061630:intron 50.0%
ACAATGACGTGCCGGAACAA+CGG + chr1_2:20083200-20083219 None:intergenic 50.0%
TATAGTGTGGTACACCGGTG+AGG - chr1_2:20083338-20083357 Msa0061630:intron 50.0%
ATAGTGTGGTACACCGGTGA+GGG - chr1_2:20083339-20083358 Msa0061630:intron 50.0%
GGCACAATTAAACCCCTCAC+CGG + chr1_2:20083355-20083374 None:intergenic 50.0%
!! GTAGGTGGATTCTAAGGTGG+GGG + chr1_2:20083376-20083395 None:intergenic 50.0%
! GTGCAGCAGGTTGAACTAAG+AGG + chr1_2:20083496-20083515 None:intergenic 50.0%
TTAGTTCAACCTGCTGCACC+AGG - chr1_2:20083497-20083516 Msa0061630:intron 50.0%
GTTACATTACCTGGTGCAGC+AGG + chr1_2:20083509-20083528 None:intergenic 50.0%
AGGGGTAGTGACCATGGAAT+TGG + chr1_2:20083613-20083632 None:intergenic 50.0%
TGACAAAGGGGTAGTGACCA+TGG + chr1_2:20083619-20083638 None:intergenic 50.0%
AAATCCGTCGGTGATCGGAA+CGG - chr1_2:20083916-20083935 Msa0061630:intron 50.0%
ATTACCGTTCCGATCACCGA+CGG + chr1_2:20083923-20083942 None:intergenic 50.0%
! ATATCTGGAATGAAGGGGGC+TGG - chr1_2:20085237-20085256 Msa0061630:intron 50.0%
GACTCAGTTCTTGATGGAGC+AGG - chr1_2:20085272-20085291 Msa0061630:intron 50.0%
AGTTGTGCGTGAAAGGTTGC+TGG - chr1_2:20085628-20085647 Msa0061630:intron 50.0%
GTTGCTGGACCATGTACATC+AGG - chr1_2:20085643-20085662 Msa0061630:intron 50.0%
GACTGGAAAGAGTTGCGAGA+TGG - chr1_2:20085805-20085824 Msa0061630:intron 50.0%
AAGATTCTTGTGGGGAAGCG+TGG - chr1_2:20085877-20085896 Msa0061630:intron 50.0%
! GGGAAGCGTGGCTCAAAAAT+TGG - chr1_2:20085889-20085908 Msa0061630:intron 50.0%
! CCTGTTCTCAGGCAAGGTTT+TGG + chr1_2:20086510-20086529 None:intergenic 50.0%
CCAAAACCTTGCCTGAGAAC+AGG - chr1_2:20086507-20086526 Msa0061630:CDS 50.0%
! GAAAGCGCGGAAGATTGTGG+TGG + chr1_2:20078710-20078729 None:intergenic 55.0%
!! GCGTCTGAATGTTCGGGTTG+AGG + chr1_2:20078766-20078785 None:intergenic 55.0%
CCAGTTTATCCGTCCGGTCT+CGG + chr1_2:20078870-20078889 None:intergenic 55.0%
! GGCGCTTGAGAAGGCTTTGT+TGG - chr1_2:20078954-20078973 Msa0061630:three_prime_UTR 55.0%
AGCTGCGTTGAGTAAACCCG+AGG - chr1_2:20078978-20078997 Msa0061630:three_prime_UTR 55.0%
TGCGTTGAGTAAACCCGAGG+AGG - chr1_2:20078981-20079000 Msa0061630:three_prime_UTR 55.0%
GTTGAGTAAACCCGAGGAGG+AGG - chr1_2:20078984-20079003 Msa0061630:three_prime_UTR 55.0%
TGCCGGTATCGCCATGTTGA+TGG + chr1_2:20079587-20079606 None:intergenic 55.0%
!! GAAGAGAGTGCCAGCTCCAT+CGG + chr1_2:20079754-20079773 None:intergenic 55.0%
AGCTGGCACTCTCTTCCAAC+AGG - chr1_2:20079758-20079777 Msa0061630:CDS 55.0%
TCTCCAGTGGGGATCCGATA+TGG - chr1_2:20080868-20080887 Msa0061630:intron 55.0%
GCAAGAACTACACGGGAGCA+GGG + chr1_2:20082306-20082325 None:intergenic 55.0%
TAGTGTGGTACACCGGTGAG+GGG - chr1_2:20083340-20083359 Msa0061630:intron 55.0%
CACGACTGTTCCAGAGTAGG+TGG + chr1_2:20083391-20083410 None:intergenic 55.0%
GTCGGTGATCGGAACGGTAA+TGG - chr1_2:20083922-20083941 Msa0061630:intron 55.0%
!! GGAACGGTAATGGACGACGA+TGG - chr1_2:20083932-20083951 Msa0061630:intron 55.0%
AATAGGCAGTAGAACGGCCC+TGG - chr1_2:20085552-20085571 Msa0061630:intron 55.0%
ATAGGCAGTAGAACGGCCCT+GGG - chr1_2:20085553-20085572 Msa0061630:intron 55.0%
GAATAGGGGATGAGAGGGGA+AGG + chr1_2:20086265-20086284 None:intergenic 55.0%
GATGACCCTGTTCTCAGGCA+AGG + chr1_2:20086516-20086535 None:intergenic 55.0%
!! GTTCGTTGGTGATCTCACGC+CGG - chr1_2:20086572-20086591 Msa0061630:CDS 55.0%
AGCGCGGAAGATTGTGGTGG+TGG + chr1_2:20078707-20078726 None:intergenic 60.0%
GTTCGGCGGAGAAGAAAGCG+CGG + chr1_2:20078723-20078742 None:intergenic 60.0%
AGGATCGGGTTCCGGTGTGA+GGG + chr1_2:20078746-20078765 None:intergenic 60.0%
!! TCGGGTTGAGGATCGGGTTC+CGG + chr1_2:20078754-20078773 None:intergenic 60.0%
CCGAGACCGGACGGATAAAC+TGG - chr1_2:20078867-20078886 Msa0061630:three_prime_UTR 60.0%
GTGTTCGGCGATGAGCCGAA+GGG - chr1_2:20078889-20078908 Msa0061630:three_prime_UTR 60.0%
TGTTCGGCGATGAGCCGAAG+GGG - chr1_2:20078890-20078909 Msa0061630:three_prime_UTR 60.0%
GAGTAAACCCGAGGAGGAGG+AGG - chr1_2:20078987-20079006 Msa0061630:exon 60.0%
TAAACCCGAGGAGGAGGAGG+AGG - chr1_2:20078990-20079009 Msa0061630:exon 60.0%
GCTTTGCTAGCCGATGGAGC+TGG - chr1_2:20079741-20079760 Msa0061630:CDS 60.0%
GGCAAGAACTACACGGGAGC+AGG + chr1_2:20082307-20082326 None:intergenic 60.0%
TCCGGCACGTCATTGTGCTG+TGG - chr1_2:20083204-20083223 Msa0061630:intron 60.0%
GCCACAGCACAATGACGTGC+CGG + chr1_2:20083208-20083227 None:intergenic 60.0%
TTCCGGTGTGAGGGGTTCGG+CGG + chr1_2:20078737-20078756 None:intergenic 65.0%
GGGTTCCGGTGTGAGGGGTT+CGG + chr1_2:20078740-20078759 None:intergenic 65.0%
GGATCGGGTTCCGGTGTGAG+GGG + chr1_2:20078745-20078764 None:intergenic 65.0%
GAGGATCGGGTTCCGGTGTG+AGG + chr1_2:20078747-20078766 None:intergenic 65.0%
GGTGTTCGGCGATGAGCCGA+AGG - chr1_2:20078888-20078907 Msa0061630:three_prime_UTR 65.0%
TCCTCCTCCTCCTCCTCCTC+GGG + chr1_2:20078997-20079016 None:intergenic 65.0%
CTCCTCCTCCTCCTCCTCCT+CGG + chr1_2:20078998-20079017 None:intergenic 65.0%
ACGTGCCGGAACAACGGCTC+CGG + chr1_2:20083194-20083213 None:intergenic 65.0%
CTCCGCCGAACCCCTCACAC+CGG - chr1_2:20078732-20078751 Msa0061630:three_prime_UTR 70.0%
ACCCGAGGAGGAGGAGGAGG+AGG - chr1_2:20078993-20079012 Msa0061630:exon 70.0%
GGAGCCCGGAGCCGTTGTTC+CGG - chr1_2:20083186-20083205 Msa0061630:intron 70.0%
CGTGCCGGAACAACGGCTCC+GGG + chr1_2:20083193-20083212 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 20078560 20086830 20078560 ID=Msa0061630;Name=Msa0061630
chr1_2 mRNA 20078560 20086830 20078560 ID=Msa0061630-mRNA-1;Parent=Msa0061630;Name=Msa0061630-mRNA-1;_AED=0.03;_eAED=0.03;_QI=86|0.85|0.87|1|0.85|0.87|8|446|425
chr1_2 exon 20078560 20079090 20078560 ID=Msa0061630-mRNA-1:exon:7665;Parent=Msa0061630-mRNA-1
chr1_2 exon 20079479 20079618 20079479 ID=Msa0061630-mRNA-1:exon:7664;Parent=Msa0061630-mRNA-1
chr1_2 exon 20079726 20079833 20079726 ID=Msa0061630-mRNA-1:exon:7663;Parent=Msa0061630-mRNA-1
chr1_2 exon 20080091 20080163 20080091 ID=Msa0061630-mRNA-1:exon:7662;Parent=Msa0061630-mRNA-1
chr1_2 exon 20080292 20080450 20080292 ID=Msa0061630-mRNA-1:exon:7661;Parent=Msa0061630-mRNA-1
chr1_2 exon 20082741 20082886 20082741 ID=Msa0061630-mRNA-1:exon:7660;Parent=Msa0061630-mRNA-1
chr1_2 exon 20083946 20084035 20083946 ID=Msa0061630-mRNA-1:exon:7659;Parent=Msa0061630-mRNA-1
chr1_2 exon 20086268 20086830 20086268 ID=Msa0061630-mRNA-1:exon:7658;Parent=Msa0061630-mRNA-1
chr1_2 five_prime_UTR 20086745 20086830 20086745 ID=Msa0061630-mRNA-1:five_prime_utr;Parent=Msa0061630-mRNA-1
chr1_2 CDS 20086268 20086744 20086268 ID=Msa0061630-mRNA-1:cds;Parent=Msa0061630-mRNA-1
chr1_2 CDS 20083946 20084035 20083946 ID=Msa0061630-mRNA-1:cds;Parent=Msa0061630-mRNA-1
chr1_2 CDS 20082741 20082886 20082741 ID=Msa0061630-mRNA-1:cds;Parent=Msa0061630-mRNA-1
chr1_2 CDS 20080292 20080450 20080292 ID=Msa0061630-mRNA-1:cds;Parent=Msa0061630-mRNA-1
chr1_2 CDS 20080091 20080163 20080091 ID=Msa0061630-mRNA-1:cds;Parent=Msa0061630-mRNA-1
chr1_2 CDS 20079726 20079833 20079726 ID=Msa0061630-mRNA-1:cds;Parent=Msa0061630-mRNA-1
chr1_2 CDS 20079479 20079618 20079479 ID=Msa0061630-mRNA-1:cds;Parent=Msa0061630-mRNA-1
chr1_2 CDS 20079006 20079090 20079006 ID=Msa0061630-mRNA-1:cds;Parent=Msa0061630-mRNA-1
chr1_2 three_prime_UTR 20078560 20079005 20078560 ID=Msa0061630-mRNA-1:three_prime_utr;Parent=Msa0061630-mRNA-1
Gene Sequence

>Msa0061630

ATGAAATCCTTAAGAATCTTCAAAAACACTCTCTATTCAACTTCTTCACCCAAAATCACCACCACCACAATCTTCCGCGCTTTCTTCTCCGCCGAACCCCTCACACCGGAACCCGATCCTCAACCCGAACATTCAGACGCAACCTTCGATAGTTCTCACTACGAACTCCCAATTCTCAACAACAACGATGAAAAGCCGAAGGTGACGTGGAATAAGAAATACCGAGACCGGACGGATAAACTGGTGTTCGGCGATGAGCCGAAGGGGAGAATGAAGTTTAAGGAGGAAGAGGAGGAGAGGAAAACAAAGGCGCTTGAGAAGGCTTTGTTGGAAGCTGCGTTGAGTAAACCCGAGGAGGAGGAGGAGGAGGAGAAAGATGAAGATGTGGGTGTTGTGAAAGAGGAGGATCAGAAGTCTTTGTCTGTTGGGATTATTGGTGCTCCTAATGCTGGCAAATCTTCTCTCACTAATTATATGGTTGGAACAAAGGTGGCGGCTGTTTCACGTAAAACAAACACCACAACTCATGAAGTTGTGGGCGTGTTGACTAAAGGAGACACCCAAATTTGTTTTTTTGATACGCCAGGGCTCGTGCTAAATTGTAGCGGATTCCCTTATAAGGATGCCAAGGCTCGTGTTGAAAGTGCTTGGAGTTCGGTCAATCTCTATGAAGTGCTCATAGTCATTTTTGATGTCCATAGACATATCACCAGGCCTGATTCAAGAGTTGTAAAACTGATCAAGCGAATGGGAGAACGGTCCATTCCAAATCAAAAGCGAGTTTTGTGTATGAATAAGATTGATTTAGTAGAGAAAAAGAAAGACTTAACGAAGGTTGCTGAAGAATTCGAAGATCTTCCTGGATTTGAAAGGCGTTTCATGATATCTGGAATGAAGGGGGCTGGCGTAAAAGATTTGACTCAGTTCTTGATGGAGCAGGCATGTGCAGTAGAACGGCCCTGGGAAGAAGATCCATTTACCATGACCGAGGAAGTTATGAAAATGATATCATTAGAAGTTGTGCGTGAAAGGTTGCTGGACCATGTACATCAGGAAATTCCATACGATATTGAACATAGGTTGATTGACTGGAAAGAGTTGCGAGATGGTTCTCTTAGGATTGAACAGCACTTTCTCACTAACAAATTAGGCCAACTCAAGATTCTTGTGGGGAAGCGTGGCTCAAAAATTGGGAGAATAGGAATAGAAGCTAATGAAGAGCTAAGGACCATTTTCAAAAAGCAAGTGCATCTAGTTCTTCAGGTTAAGCTCAAATGA
Protein sequence

>Msa0061630

MKSLRIFKNTLYSTSSPKITTTTIFRAFFSAEPLTPEPDPQPEHSDATFDSSHYELPILNNNDEKPKVTWNKKYRDRTDKLVFGDEPKGRMKFKEEEEERKTKALEKALLEAALSKPEEEEEEEKDEDVGVVKEEDQKSLSVGIIGAPNAGKSSLTNYMVGTKVAAVSRKTNTTTHEVVGVLTKGDTQICFFDTPGLVLNCSGFPYKDAKARVESAWSSVNLYEVLIVIFDVHRHITRPDSRVVKLIKRMGERSIPNQKRVLCMNKIDLVEKKKDLTKVAEEFEDLPGFERRFMISGMKGAGVKDLTQFLMEQACAVERPWEEDPFTMTEEVMKMISLEVVRERLLDHVHQEIPYDIEHRLIDWKELRDGSLRIEQHFLTNKLGQLKILVGKRGSKIGRIGIEANEELRTIFKKQVHLVLQVKLK*