AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0346090

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0346090 MtrunA17_Chr3g0078601 96.396 222 7 1 3 224 218 438 2.83e-150 441
Msa0346090 MtrunA17_Chr3g0078591 100.000 164 0 0 214 377 4 167 1.03e-114 340
Msa0346090 MtrunA17_Chr3g0078591 81.215 181 33 1 455 635 2 181 1.33e-98 299
Msa0346090 MtrunA17_Chr8g0355901 98.788 165 2 0 213 377 2 166 2.92e-114 339
Msa0346090 MtrunA17_Chr8g0355901 82.320 181 30 2 455 635 2 180 1.29e-98 299
Msa0346090 MtrunA17_Chr4g0041531 97.576 165 4 0 213 377 2 166 2.95e-113 337
Msa0346090 MtrunA17_Chr4g0041531 82.486 177 30 1 459 635 5 180 8.22e-98 297
Msa0346090 MtrunA17_Chr3g0078581 93.750 144 9 0 492 635 1 144 1.41e-92 282
Msa0346090 MtrunA17_Chr3g0078581 77.857 140 31 0 249 388 2 141 5.27e-71 226
Msa0346090 MtrunA17_Chr1g0149801 62.500 72 14 2 395 454 1 71 9.11e-20 89.0
Msa0346090 MtrunA17_Chr7g0264261 90.000 40 4 0 214 253 3 42 4.61e-16 74.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0346090 AT5G64610.1 92.342 222 16 1 3 224 223 443 4.46e-147 434
Msa0346090 AT5G09740.1 95.775 213 9 0 3 215 223 435 2.57e-145 429
Msa0346090 AT5G09740.2 86.512 215 28 1 2 215 143 357 3.77e-126 377
Msa0346090 AT2G42740.1 88.587 184 17 1 213 396 2 181 2.56e-112 335
Msa0346090 AT2G42740.1 80.663 181 33 2 455 635 2 180 4.21e-96 293
Msa0346090 AT4G18730.1 88.043 184 18 1 213 396 2 181 1.28e-111 333
Msa0346090 AT4G18730.1 80.110 181 34 2 455 635 2 180 1.93e-95 291
Msa0346090 AT3G58700.1 88.043 184 18 1 213 396 2 181 1.28e-111 333
Msa0346090 AT3G58700.1 80.110 181 34 2 455 635 2 180 1.93e-95 291
Msa0346090 AT5G45775.2 88.043 184 18 1 213 396 2 181 1.28e-111 333
Msa0346090 AT5G45775.2 80.110 181 34 2 455 635 2 180 1.93e-95 291
Msa0346090 AT5G45775.1 87.429 175 18 1 222 396 1 171 8.36e-105 315
Msa0346090 AT5G45775.1 80.702 171 32 1 465 635 1 170 7.90e-92 281

Find 182 sgRNAs with CRISPR-Local

Find 728 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATCCTTCTATTGGTATTTA+TGG 0.091570 3_1:+6026567 Msa0346090:CDS
GATCCTTCCACTGGTATTTA+TGG 0.136205 3_1:+6020953 Msa0346090:CDS
TGGGCAGAATCTTTGTTATT+TGG 0.168973 3_1:+6015575 Msa0346090:CDS
CAATATATCTTCAGCTTTAA+TGG 0.187495 3_1:-6016712 None:intergenic
TTCAGTGATAATGGTTCTTT+TGG 0.210803 3_1:+6025887 Msa0346090:CDS
GGCAAGAAGAACAAGGTTTA+TGG 0.235453 3_1:+6015555 Msa0346090:CDS
AGGTCTGAAAGGGGCCTTTC+AGG 0.239360 3_1:-6016320 None:intergenic
AGATGGCGATCCAAAACTTT+TGG 0.251790 3_1:-6016798 None:intergenic
CGACAAGGCAATGCAGCTTT+TGG 0.255810 3_1:+6020518 Msa0346090:CDS
CGACAAGGCAATGCAGCTTT+TGG 0.255810 3_1:+6025820 Msa0346090:CDS
TTCTGAGGAATCCTACAATT+TGG 0.272691 3_1:+6016103 Msa0346090:CDS
TCCTGTATTGAATCAGTTCT+AGG 0.273115 3_1:-6016749 None:intergenic
TATCCAGGAACATATTGATT+TGG 0.290604 3_1:+6020614 Msa0346090:CDS
GCTTGCTACGTCACTGTTAG+AGG 0.295234 3_1:+6025797 Msa0346090:CDS
TTCAGTGATACCGGGTGTTT+TGG 0.295806 3_1:+6020585 Msa0346090:CDS
TGCACTTTGATTTCCCTCAT+TGG 0.303574 3_1:-6019575 None:intergenic
AAATGAGCTCGGGCCTGTTT+AGG 0.327116 3_1:-6026731 None:intergenic
AATGTTCTCTCTCAAACATT+AGG 0.332164 3_1:+6024586 Msa0346090:CDS
TTGTGCGGATCCAAAAGTTT+TGG 0.348879 3_1:+6016788 Msa0346090:CDS
GCGAATTATCCGAAACGAAA+TGG 0.350172 3_1:+6024675 Msa0346090:CDS
GCATGCTACGTCACTGTTAG+AGG 0.353505 3_1:+6020495 Msa0346090:CDS
CTCTCTCAAACATTAGGTTA+TGG 0.360757 3_1:+6024592 Msa0346090:CDS
ATCCAGGAACATATTGATTT+GGG 0.366765 3_1:+6020615 Msa0346090:CDS
TATGGATTTCTTTGTTGTCT+TGG 0.372237 3_1:+6020976 Msa0346090:CDS
CGAACAAGAACAGACATGTT+TGG 0.373756 3_1:-6024544 None:intergenic
AAGCACACCGTCCGTTCCTT+TGG 0.377432 3_1:+6025752 Msa0346090:CDS
TTTAACTTGGAACCACTTCA+TGG 0.385179 3_1:-6021080 None:intergenic
TTTACCTTGGAACCACTTCA+TGG 0.385179 3_1:-6026694 None:intergenic
TCCAAGACGTGCCTTGCAAC+GGG 0.386153 3_1:-6026643 None:intergenic
TATTCAGGATCATATTGAAC+TGG 0.390064 3_1:+6025916 Msa0346090:CDS
CTAGAAACTCCATTTCGTTT+CGG 0.391084 3_1:-6024684 None:intergenic
TTCCCAAATCAATATGTTCC+TGG 0.396627 3_1:-6020617 None:intergenic
TCCGTTCCTTTGGTATTAGA+AGG 0.399311 3_1:+6020460 Msa0346090:CDS
AGAAAATACCTTAGCGGCTC+TGG 0.400111 3_1:-6019645 None:intergenic
AGGAGAAACTTCAGTGATAA+TGG 0.403376 3_1:+6025878 Msa0346090:CDS
TTCCACTGGTATTTATGGTA+TGG 0.405174 3_1:+6020958 Msa0346090:CDS
AAATTACCTTTAGAGAGAAC+AGG 0.410952 3_1:-6025152 None:intergenic
CCATAGCCTTTCCTTTGGTA+AGG 0.412700 3_1:-6016146 None:intergenic
AATGAATTACTTTGTTGTCT+TGG 0.417228 3_1:+6026590 Msa0346090:CDS
TTTAGTCGTAGCCATTCTTA+AGG 0.418243 3_1:+6026751 Msa0346090:exon
TCCGTTCCTTTGGTAATAGA+AGG 0.420604 3_1:+6025762 Msa0346090:CDS
TGCAGGTATGATCCTTCTAT+TGG 0.423706 3_1:+6026558 Msa0346090:intron
CGACGTCCCACACGATTACC+AGG 0.424159 3_1:-6026618 None:intergenic
GCAAGAAGAACAAGGTTTAT+GGG 0.425430 3_1:+6015556 Msa0346090:CDS
GTTGGATTCAAAGGGTGATC+TGG 0.426901 3_1:-6024647 None:intergenic
AAAATACCTTTGGAGAAAAC+AGG 0.431508 3_1:-6019771 None:intergenic
TTTGGTAAGGTGGGAGGGTG+AGG 0.431925 3_1:-6016133 None:intergenic
TCGCAAAATGTTGGATTCAA+AGG 0.431929 3_1:-6024656 None:intergenic
ATTCCATAAATACCAATAGA+AGG 0.431985 3_1:-6026570 None:intergenic
AGGTACACGGTCCGTTCCTT+TGG 0.433646 3_1:+6020450 Msa0346090:CDS
ACAAAACATAGAACAGAAAC+AGG 0.434714 3_1:-6015641 None:intergenic
TGCTAAGCTACAGAGGATAT+TGG 0.435547 3_1:+6016348 Msa0346090:CDS
ATGAAGGTGTGATCCTAAAC+AGG 0.444105 3_1:+6026718 Msa0346090:CDS
CATCTCAAAGCGGCTGGCAG+AGG 0.448744 3_1:+6016816 Msa0346090:CDS
CTCTGCCAGCCGCTTTGAGA+TGG 0.450706 3_1:-6016815 None:intergenic
CGCAAAATGTTGGATTCAAA+GGG 0.451029 3_1:-6024655 None:intergenic
AGGAGAAACTTCAGTGATAC+CGG 0.455510 3_1:+6020576 Msa0346090:CDS
AGCCTTTCCTTTGGTAAGGT+GGG 0.455889 3_1:-6016142 None:intergenic
CACTATCAATATTTAGAGAA+AGG 0.459247 3_1:-6026886 None:intergenic
GCCTAGAACTGATTCAATAC+AGG 0.461707 3_1:+6016748 Msa0346090:CDS
TATGTCTGAAAACAGGTTGA+TGG 0.461817 3_1:+6015534 Msa0346090:intron
TAGCCTTTCCTTTGGTAAGG+TGG 0.462887 3_1:-6016143 None:intergenic
CCCCGTTGCAAGGCACGTCT+TGG 0.463319 3_1:+6026642 Msa0346090:CDS
CTCAAAGCGGCTGGCAGAGG+GGG 0.465660 3_1:+6016819 Msa0346090:CDS
TCGGATAATTCGCAAAATGT+TGG 0.466209 3_1:-6024665 None:intergenic
TGGTACATTGTCAATGTTTG+AGG 0.468141 3_1:+6014876 Msa0346090:CDS
CAAACCCCTGTTCTCTCTAA+AGG 0.468345 3_1:+6025146 Msa0346090:CDS
ATCTCAAAGCGGCTGGCAGA+GGG 0.470129 3_1:+6016817 Msa0346090:CDS
TAGAACTCAGTCCTTAAGAA+TGG 0.470350 3_1:-6026762 None:intergenic
TAGCAGTCCAAGGTCTGAAA+GGG 0.474333 3_1:-6016330 None:intergenic
TTTGTTGTCTTGGAGCGCCC+TGG 0.474962 3_1:+6020986 Msa0346090:CDS
TAAGGGAAACATTTCTATCA+AGG 0.476254 3_1:+6016403 Msa0346090:CDS
CATCCTTTGTGACACGATGC+TGG 0.477319 3_1:-6026668 None:intergenic
TGCACTTTGATATCCCTCAA+TGG 0.477939 3_1:-6025038 None:intergenic
GTGAAGAACCATGGCAGCTC+TGG 0.478943 3_1:-6025111 None:intergenic
GAGGATACATGCCAAATTGT+AGG 0.479474 3_1:-6016114 None:intergenic
TCAAAGAAGGAGGGAAAAGT+TGG 0.481503 3_1:+6016293 Msa0346090:CDS
GAAAGGCCCCTTTCAGACCT+TGG 0.481558 3_1:+6016323 Msa0346090:CDS
CTTTCCTTTGGTAAGGTGGG+AGG 0.482746 3_1:-6016139 None:intergenic
TTTGTTGTCTTGGAGCGCCC+TGG 0.484386 3_1:+6026600 Msa0346090:CDS
TTTCCTTTGGTAAGGTGGGA+GGG 0.485022 3_1:-6016138 None:intergenic
CGACGTCCCACACGATAACC+AGG 0.485872 3_1:-6021004 None:intergenic
CTTGTGATCAAGAAATAACT+TGG 0.501570 3_1:-6015598 None:intergenic
TCACACCTTCATATTTACCT+TGG 0.504675 3_1:-6026707 None:intergenic
CGTCCTTTGTGACACGATGT+TGG 0.505609 3_1:-6021054 None:intergenic
TTTAAAATTAATCATCGGTA+CGG 0.510857 3_1:+6026825 Msa0346090:three_prime_UTR
TTCCAAGACGTGCCTTGCAA+CGG 0.515221 3_1:-6026644 None:intergenic
TTCATTCCTTCTATTACCAA+AGG 0.516193 3_1:-6025768 None:intergenic
ACTATCAATATTTAGAGAAA+GGG 0.518501 3_1:-6026885 None:intergenic
TTCATTCCTTCTAATACCAA+AGG 0.519643 3_1:-6020466 None:intergenic
AGCATATGAACTTTCAAAGA+AGG 0.519666 3_1:+6016280 Msa0346090:intron
CGTAGGTGCAAGGCAAGAGT+TGG 0.526727 3_1:+6021028 Msa0346090:CDS
GTACTCAACATCTCCGTTGG+TGG 0.527224 3_1:+6025068 Msa0346090:CDS
TCGTCTCACCAGAGCCGCTA+AGG 0.538952 3_1:+6019637 Msa0346090:CDS
ATGGTTCTTCACCACCTTAG+CGG 0.539382 3_1:+6025122 Msa0346090:CDS
CTTCTGTATATCTCATCACC+AGG 0.541478 3_1:-6014853 None:intergenic
GGGACGTCGTCCCCGTTGCA+AGG 0.542258 3_1:+6026632 Msa0346090:CDS
GGAGAGCGGTTTGAAGGTCA+AGG 0.545050 3_1:+6020539 Msa0346090:CDS
GGAGAGCGGTTTGAAGGTCA+AGG 0.545050 3_1:+6025841 Msa0346090:CDS
GCTACAGAGGATATTGGACC+AGG 0.545227 3_1:+6016354 Msa0346090:CDS
TGATATCGCTCCTCCACACC+AGG 0.546940 3_1:+6024708 Msa0346090:CDS
TTAGCAGTCCAAGGTCTGAA+AGG 0.547238 3_1:-6016331 None:intergenic
CCTTACCAAAGGAAAGGCTA+TGG 0.547648 3_1:+6016146 Msa0346090:CDS
GGCTACGACTAAATGAGCTC+GGG 0.548891 3_1:-6026741 None:intergenic
GATCGCCATCTCAAAGCGGC+TGG 0.549312 3_1:+6016810 Msa0346090:CDS
TGGCTACGACTAAATGAGCT+CGG 0.550618 3_1:-6026742 None:intergenic
ATACTGAGAAAATACCTTAG+CGG 0.552318 3_1:-6019651 None:intergenic
GAGCGCCCTGGTTATCGTGT+GGG 0.552380 3_1:+6020998 Msa0346090:CDS
TTGTGTGAATGTGATGAAAG+AGG 0.553539 3_1:+6015660 Msa0346090:CDS
AACATCTCCGTCGGTGAAAG+CGG 0.555183 3_1:+6019611 Msa0346090:CDS
AACTGTTGAATAATCCATTG+AGG 0.556096 3_1:+6025024 Msa0346090:CDS
ACTGTTGAATAATCCATTGA+GGG 0.556127 3_1:+6025025 Msa0346090:CDS
CTCTGTAGCTTAGCAGTCCA+AGG 0.556626 3_1:-6016340 None:intergenic
TTCAGGTATGATCCTTCCAC+TGG 0.557425 3_1:+6020944 Msa0346090:intron
CGTAGTTTAAAATTAATCAT+CGG 0.557623 3_1:+6026820 Msa0346090:three_prime_UTR
CTTGTACTCAACATCTCCGT+TGG 0.562563 3_1:+6025065 Msa0346090:CDS
GATGCCATGAAGTGGTTCCA+AGG 0.562652 3_1:+6026690 Msa0346090:CDS
GAACAGGGGTTTGACCGCTA+AGG 0.564584 3_1:-6025136 None:intergenic
TCGTCTCACCAGAGCTGCCA+TGG 0.565529 3_1:+6025103 Msa0346090:CDS
TCAAGGAATATGAGCTGTTG+AGG 0.569136 3_1:+6020556 Msa0346090:CDS
GACGGCGAGACACGACGGAA+CGG 0.571295 3_1:-6024503 None:intergenic
GGAGCGCCCTGGTTATCGTG+TGG 0.572642 3_1:+6020997 Msa0346090:CDS
GGAGCGCCCTGGTAATCGTG+TGG 0.572642 3_1:+6026611 Msa0346090:CDS
ATATGAACTTTCAAAGAAGG+AGG 0.574759 3_1:+6016283 Msa0346090:CDS
TGGTTCCAAGGTAAATATGA+AGG 0.574771 3_1:+6026702 Msa0346090:CDS
GAGCGCCCTGGTAATCGTGT+GGG 0.575134 3_1:+6026612 Msa0346090:CDS
TCCTTCTATTACCAAAGGAA+CGG 0.576590 3_1:-6025763 None:intergenic
TAGGTTCTTGAACAGCTAAG+TGG 0.586306 3_1:+6019741 Msa0346090:intron
TCAAGGAATATAAACTGTTG+AGG 0.587391 3_1:+6025858 Msa0346090:CDS
GAAAAGTTGGTACACCTGAA+AGG 0.588501 3_1:+6016306 Msa0346090:CDS
CAGGGGTTTGACCGCTAAGG+TGG 0.588622 3_1:-6025133 None:intergenic
GAAAGAGGATGCCACATGGT+TGG 0.592800 3_1:+6015675 Msa0346090:CDS
ATTCAGGATCATATTGAACT+GGG 0.597529 3_1:+6025917 Msa0346090:CDS
AATTACCTTTAGAGAGAACA+GGG 0.599474 3_1:-6025151 None:intergenic
ACGATCTCCGCTTTCACCGA+CGG 0.600295 3_1:-6019618 None:intergenic
CTCCCACCTTACCAAAGGAA+AGG 0.601922 3_1:+6016140 Msa0346090:CDS
CAGAATGTCTAAAAGAACCC+TGG 0.606443 3_1:-6016372 None:intergenic
ATCACTGAATTCGATGACAT+TGG 0.606976 3_1:-6026911 None:intergenic
GGGACGTCGTCGTAGGTGCA+AGG 0.607035 3_1:+6021018 Msa0346090:CDS
ACAGGTCAACATCATAGTAG+AGG 0.608876 3_1:-6015623 None:intergenic
GAAACTGTCTAATCCAATGA+GGG 0.609459 3_1:+6019562 Msa0346090:CDS
GGTTGATGGCAAGAAGAACA+AGG 0.611054 3_1:+6015548 Msa0346090:intron
ATCGTGTGGGACGTCGTCGT+AGG 0.611248 3_1:+6021011 Msa0346090:CDS
TCCTTCTAATACCAAAGGAA+CGG 0.611594 3_1:-6020461 None:intergenic
CAAAGGATGATGCCATGAAG+TGG 0.613790 3_1:+6026682 Msa0346090:CDS
CAAAGGACGATGCCATGAAG+TGG 0.617548 3_1:+6021068 Msa0346090:CDS
GAACTGATTCAATACAGGAA+AGG 0.617862 3_1:+6016753 Msa0346090:CDS
CTTGGACTGCTAAGCTACAG+AGG 0.618666 3_1:+6016341 Msa0346090:CDS
ATCCATACCATAAATACCAG+TGG 0.620651 3_1:-6020960 None:intergenic
ATGTCTACTTTCACCACCAA+CGG 0.622938 3_1:-6025081 None:intergenic
CTTATTGACAGCTAGGTACA+CGG 0.623398 3_1:+6020437 Msa0346090:intron
CTTGTACTCAACATCTCCGT+CGG 0.623554 3_1:+6019602 Msa0346090:CDS
TTGTCAGAGCTTGAATCACA+TGG 0.624072 3_1:+6026966 Msa0346090:three_prime_UTR
CGTCACTGTTAGAGGCGACA+AGG 0.626392 3_1:+6020503 Msa0346090:CDS
CGTCACTGTTAGAGGCGACA+AGG 0.626392 3_1:+6025805 Msa0346090:CDS
TATGAACTTTCAAAGAAGGA+GGG 0.626646 3_1:+6016284 Msa0346090:CDS
TCTCAAAGCGGCTGGCAGAG+GGG 0.626973 3_1:+6016818 Msa0346090:CDS
TTCTGTATATCTCATCACCA+GGG 0.627558 3_1:-6014852 None:intergenic
AGAAACTGTCTAATCCAATG+AGG 0.629710 3_1:+6019561 Msa0346090:CDS
CAGGTCAACATCATAGTAGA+GGG 0.630927 3_1:-6015622 None:intergenic
GGAGCGACGGCGAGACACGA+CGG 0.631144 3_1:-6024508 None:intergenic
ATACCATAAATACCAGTGGA+AGG 0.634245 3_1:-6020956 None:intergenic
TCACCCTCCCACCTTACCAA+AGG 0.640713 3_1:+6016135 Msa0346090:CDS
GCTAAGGTGGTGAAGAACCA+TGG 0.651872 3_1:-6025120 None:intergenic
TCTATTACCAAAGGAACGGA+CGG 0.660324 3_1:-6025759 None:intergenic
GGAGAAACTTCAGTGATACC+GGG 0.660930 3_1:+6020577 Msa0346090:CDS
GATACCGAAGCCAAAACACC+CGG 0.661477 3_1:-6020595 None:intergenic
GGTGATGAGATATACAGAAG+TGG 0.664409 3_1:+6014856 Msa0346090:CDS
AGGACAGCATGTCATTTGTG+CGG 0.673789 3_1:+6016773 Msa0346090:CDS
AATCCAGCATCGTGTCACAA+AGG 0.677456 3_1:+6026665 Msa0346090:CDS
AGCAGTCCAAGGTCTGAAAG+GGG 0.678912 3_1:-6016329 None:intergenic
AATCCAACATCGTGTCACAA+AGG 0.679828 3_1:+6021051 Msa0346090:CDS
TCTGTATATCTCATCACCAG+GGG 0.682304 3_1:-6014851 None:intergenic
CTACAGAGGATATTGGACCA+GGG 0.692391 3_1:+6016355 Msa0346090:CDS
CCAAGACGTGCCTTGCAACG+GGG 0.701300 3_1:-6026642 None:intergenic
AAAATGAGAACCTGGTGTGG+AGG 0.705321 3_1:-6024718 None:intergenic
ATTACCTTTAGAGAGAACAG+GGG 0.717107 3_1:-6025150 None:intergenic
TTTGGATCGCCATCTCAAAG+CGG 0.719564 3_1:+6016806 Msa0346090:CDS
GACGTCCCACACGATAACCA+GGG 0.726452 3_1:-6021003 None:intergenic
CTGTATATCTCATCACCAGG+GGG 0.726804 3_1:-6014850 None:intergenic
GACGTCCCACACGATTACCA+GGG 0.746810 3_1:-6026617 None:intergenic
TGATGAAAGAGGATGCCACA+TGG 0.748395 3_1:+6015671 Msa0346090:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATTTTATTTTATTTATTT+AGG + chr3_1:6015863-6015882 Msa0346090:intron 0.0%
!! AAAAAAAAAAAAAAAAAAAT+AGG - chr3_1:6026314-6026333 None:intergenic 0.0%
!!! AATTTTCAAAAATAATAAAC+TGG + chr3_1:6018435-6018454 Msa0346090:intron 10.0%
!! TAAATTAAAAAAAATACCTT+TGG - chr3_1:6019784-6019803 None:intergenic 10.0%
!!! AATATTTTTCTTCAAATAAA+AGG - chr3_1:6020800-6020819 None:intergenic 10.0%
!! TTTATTTGAAGAAAAATATT+CGG + chr3_1:6020800-6020819 Msa0346090:intron 10.0%
!! AAACAAAAAAATATATACAA+AGG - chr3_1:6020860-6020879 None:intergenic 10.0%
!! CTTGAAAAATTATATTAATT+TGG + chr3_1:6022480-6022499 Msa0346090:intron 10.0%
!!! TTGAAAAAAGTATATATATT+TGG + chr3_1:6024153-6024172 Msa0346090:intron 10.0%
!!! AACCAAAATTAAAATTATTT+TGG + chr3_1:6024256-6024275 Msa0346090:intron 10.0%
!!! AACCAAAATAATTTTAATTT+TGG - chr3_1:6024261-6024280 None:intergenic 10.0%
!! CAATTTGATATATATAATAA+AGG + chr3_1:6025369-6025388 Msa0346090:intron 10.0%
!! ATTTGATATATATAATAAAG+GGG + chr3_1:6025371-6025390 Msa0346090:intron 10.0%
!! ATATAAATATTCTTTCTACT+GGG + chr3_1:6015228-6015247 Msa0346090:intron 15.0%
!! AAAATTACAAATATCTAACA+GGG - chr3_1:6015744-6015763 None:intergenic 15.0%
!! AAAAATTACAAATATCTAAC+AGG - chr3_1:6015745-6015764 None:intergenic 15.0%
!! AATTTATTTGTTTGACATTA+TGG + chr3_1:6016034-6016053 Msa0346090:intron 15.0%
!! AGTTTAAGTAAAATTCATAA+TGG + chr3_1:6016242-6016261 Msa0346090:intron 15.0%
!!! TTGACAAATTTTAAAGAAAA+TGG - chr3_1:6016439-6016458 None:intergenic 15.0%
!!! TTTTCTTTAAAATTTGTCAA+TGG + chr3_1:6016439-6016458 Msa0346090:intron 15.0%
!!! ATTTTTAATATTTTACTTGC+TGG + chr3_1:6016555-6016574 Msa0346090:intron 15.0%
!!! TTTTTAATATTTTACTTGCT+GGG + chr3_1:6016556-6016575 Msa0346090:intron 15.0%
!! AATATGAAAGTTTATGTATT+AGG + chr3_1:6016621-6016640 Msa0346090:intron 15.0%
!! AAAAAAAATATATTTAACCC+AGG + chr3_1:6017326-6017345 Msa0346090:intron 15.0%
!! AAAAAAATATATTTAACCCA+GGG + chr3_1:6017327-6017346 Msa0346090:intron 15.0%
!!! CTTGTAATATCTAATTATTT+TGG + chr3_1:6017350-6017369 Msa0346090:intron 15.0%
!!! CAATAATTTAATCTTTTGAA+TGG - chr3_1:6018119-6018138 None:intergenic 15.0%
!! CAAAAGATTAAATTATTGTT+AGG + chr3_1:6018121-6018140 Msa0346090:intron 15.0%
!! AAAAAGATTAAATTCTTGTT+AGG - chr3_1:6018226-6018245 None:intergenic 15.0%
!! TATAATATAATGATCAACAA+TGG + chr3_1:6019443-6019462 Msa0346090:intron 15.0%
!! CATTATTATTATGTCAATTT+CGG - chr3_1:6019527-6019546 None:intergenic 15.0%
!! ATTGACATAATAATAATGAT+AGG + chr3_1:6019529-6019548 Msa0346090:intron 15.0%
!!! AAAATATATGTACAAGTTTT+TGG - chr3_1:6020027-6020046 None:intergenic 15.0%
!!! CAAATAACATTAACTTATTT+TGG + chr3_1:6020053-6020072 Msa0346090:intron 15.0%
!! AAAAATATATACAAAGGAAA+AGG - chr3_1:6020854-6020873 None:intergenic 15.0%
!!! CATAATTTTAAACATCAATA+TGG - chr3_1:6020923-6020942 None:intergenic 15.0%
!! GATTAAATTAGTAATTGATA+TGG - chr3_1:6021760-6021779 None:intergenic 15.0%
!! ATTTATTTAACTACATGAAA+GGG + chr3_1:6022361-6022380 Msa0346090:intron 15.0%
!!! TTTTAACTAAAAATTGTTCA+AGG + chr3_1:6022598-6022617 Msa0346090:intron 15.0%
!!! TTGGAATTTTGTTTTTATAT+GGG - chr3_1:6023765-6023784 None:intergenic 15.0%
!!! ATTGGAATTTTGTTTTTATA+TGG - chr3_1:6023766-6023785 None:intergenic 15.0%
!! GAAAAAAAATAAAACTAATG+TGG - chr3_1:6023963-6023982 None:intergenic 15.0%
!! ATATAAATTATATATGTAGC+CGG + chr3_1:6024184-6024203 Msa0346090:intron 15.0%
!!! AATTTTAATTTTGGTTGATT+TGG - chr3_1:6024252-6024271 None:intergenic 15.0%
!!! TATCATAGGTTTTATTTTTT+AGG + chr3_1:6025196-6025215 Msa0346090:intron 15.0%
!! AATTAACTATAATGCTTTAT+AGG + chr3_1:6025236-6025255 Msa0346090:intron 15.0%
!! ATTAACTATAATGCTTTATA+GGG + chr3_1:6025237-6025256 Msa0346090:intron 15.0%
!! TATATATATCAAATTGACAT+TGG - chr3_1:6025365-6025384 None:intergenic 15.0%
!!! AAATTAAACATAATGGAAGA+CGG - chr3_1:6014982-6015001 None:intergenic 20.0%
!!! TCTTCCATTATGTTTAATTT+TGG + chr3_1:6014982-6015001 Msa0346090:intron 20.0%
!! ATCTCCAAAATTAAACATAA+TGG - chr3_1:6014989-6015008 None:intergenic 20.0%
!!! ATTGTTTAATTTAATACACG+AGG - chr3_1:6015046-6015065 None:intergenic 20.0%
!! CATATAAATATTCTTTCTAC+TGG + chr3_1:6015227-6015246 Msa0346090:intron 20.0%
!! AAAAACATCTTTCAATACTT+AGG - chr3_1:6015381-6015400 None:intergenic 20.0%
!! TTCAATTTCCATAATTCTAT+TGG + chr3_1:6016001-6016020 Msa0346090:intron 20.0%
!! AAAAGTAATCAGTATCAATA+AGG - chr3_1:6016064-6016083 None:intergenic 20.0%
!!! TGATTACTTTTTTATCGTAA+AGG + chr3_1:6016073-6016092 Msa0346090:intron 20.0%
!!! AATTTTAAAGAAAATGGAAG+AGG - chr3_1:6016433-6016452 None:intergenic 20.0%
!! TTAATACACATACATCAAAA+GGG - chr3_1:6016977-6016996 None:intergenic 20.0%
!!! TTTTATTTTATGGATATTCC+TGG + chr3_1:6017093-6017112 Msa0346090:intron 20.0%
!!! GAATCAGTTTTTTCAAAATT+AGG - chr3_1:6017291-6017310 None:intergenic 20.0%
!! CAATTATTCAAAATTCGAAA+CGG - chr3_1:6017485-6017504 None:intergenic 20.0%
!! ACATTACATTACATTACATT+AGG + chr3_1:6017671-6017690 Msa0346090:intron 20.0%
!! CATTACATTACATTACATTA+GGG + chr3_1:6017672-6017691 Msa0346090:intron 20.0%
!!! CAAGAATTTAATCTTTTGAA+TGG - chr3_1:6017902-6017921 None:intergenic 20.0%
!! CAAAAGATTAAATTCTTGTT+AGG + chr3_1:6017795-6017814 Msa0346090:intron 20.0%
!! CAAAAGATTAAATTCTTGTT+AGG - chr3_1:6017795-6017814 None:intergenic 20.0%
!! TGATAAAATGAGAGTAATAA+TGG + chr3_1:6018245-6018264 Msa0346090:intron 20.0%
!! ATTACTACATAGAATAGAAT+AGG - chr3_1:6018651-6018670 None:intergenic 20.0%
!! AATGATGCAATTACATAAAT+TGG - chr3_1:6018712-6018731 None:intergenic 20.0%
!!! ATGTAATTGCATCATTTTTT+AGG + chr3_1:6018716-6018735 Msa0346090:intron 20.0%
!!! TGTAATTGCATCATTTTTTA+GGG + chr3_1:6018717-6018736 Msa0346090:intron 20.0%
!! AAACAAACTCTTATTATGTA+TGG + chr3_1:6019058-6019077 Msa0346090:intron 20.0%
!! AAGATAATTCTTTGTTCATT+TGG - chr3_1:6019409-6019428 None:intergenic 20.0%
!!! TCAATATTTGCTAGTTTTTT+AGG + chr3_1:6019995-6020014 Msa0346090:intron 20.0%
!!! ATGAAGTAATTTTTTCTTTC+CGG - chr3_1:6020090-6020109 None:intergenic 20.0%
!! AAGAAAAAATTACTTCATAC+AGG + chr3_1:6020092-6020111 Msa0346090:intron 20.0%
!! ATACTAATGTTATCAAAAAG+TGG + chr3_1:6020162-6020181 Msa0346090:intron 20.0%
!! ACTTAGAAATACATATTTCA+AGG + chr3_1:6020291-6020310 Msa0346090:intron 20.0%
!!! TTTTCACAAGAAACTAAAAA+TGG + chr3_1:6021420-6021439 Msa0346090:intron 20.0%
!! AATAATCATCCAAAATTTCA+AGG - chr3_1:6021461-6021480 None:intergenic 20.0%
!! GACAATAAAAAATTGAAAGA+TGG - chr3_1:6021690-6021709 None:intergenic 20.0%
!! TAATGAAGATTAATAGAAGT+TGG + chr3_1:6021927-6021946 Msa0346090:intron 20.0%
!! TCTATTAAGAACATTCTATT+AGG - chr3_1:6021960-6021979 None:intergenic 20.0%
!! TCCAAAGATAATAATAGTAA+AGG + chr3_1:6022008-6022027 Msa0346090:intron 20.0%
!! ACCTTTACTATTATTATCTT+TGG - chr3_1:6022012-6022031 None:intergenic 20.0%
!!! ATTTTTAAAGGATTGGTAAT+CGG - chr3_1:6022245-6022264 None:intergenic 20.0%
!!! CAATTACATTTTTAAAGGAT+TGG - chr3_1:6022252-6022271 None:intergenic 20.0%
!! GATTTATTTAACTACATGAA+AGG + chr3_1:6022360-6022379 Msa0346090:intron 20.0%
!!! AAATTGTTCCTTTTTACTTT+TGG - chr3_1:6022751-6022770 None:intergenic 20.0%
!! TACACAACTATATTAGATAA+AGG + chr3_1:6022775-6022794 Msa0346090:intron 20.0%
!!! TCAATTTGACTTGTTATTTA+AGG - chr3_1:6022818-6022837 None:intergenic 20.0%
!!! AATATAACTTGTTGTATAGT+TGG + chr3_1:6022933-6022952 Msa0346090:intron 20.0%
!!! ATATAACTTGTTGTATAGTT+GGG + chr3_1:6022934-6022953 Msa0346090:intron 20.0%
!! ATAATTCAACATGTGAAAAA+TGG + chr3_1:6023091-6023110 Msa0346090:intron 20.0%
!! CTACAAAATATTTCATTTAG+TGG - chr3_1:6023285-6023304 None:intergenic 20.0%
!!! CACTAAATGAAATATTTTGT+AGG + chr3_1:6023283-6023302 Msa0346090:intron 20.0%
!!! AAAACTATTTGGTTGTTATT+TGG - chr3_1:6023405-6023424 None:intergenic 20.0%
!! GATTAAATATAATCATGTGT+CGG - chr3_1:6023469-6023488 None:intergenic 20.0%
!! TGTGATTAAAAAGGAAATTA+TGG - chr3_1:6023619-6023638 None:intergenic 20.0%
!! ATTCATATCTGTGATTAAAA+AGG - chr3_1:6023628-6023647 None:intergenic 20.0%
!! AGATATGAATCTTAATACAA+GGG + chr3_1:6023638-6023657 Msa0346090:intron 20.0%
!!! GTTCATATATAGTTTTTCTT+TGG - chr3_1:6023674-6023693 None:intergenic 20.0%
!! TGACATATGATAAAACATTA+TGG - chr3_1:6023886-6023905 None:intergenic 20.0%
!! TTGTTTCAATTGTAATAAGA+AGG - chr3_1:6023939-6023958 None:intergenic 20.0%
!!! ACTACGTATTTTTTAACTTA+CGG + chr3_1:6024004-6024023 Msa0346090:intron 20.0%
!! TATAAATTATATATGTAGCC+GGG + chr3_1:6024185-6024204 Msa0346090:intron 20.0%
!!! ATGTTTGGATTTTTGTTATT+CGG - chr3_1:6024532-6024551 None:intergenic 20.0%
!! TATGATAAACCAATTAGTAT+TGG - chr3_1:6026241-6026260 None:intergenic 20.0%
!! CAAAAAATACTAATTGCTTT+AGG + chr3_1:6026261-6026280 Msa0346090:intron 20.0%
!!! CGATGATTAATTTTAAACTA+CGG - chr3_1:6026822-6026841 None:intergenic 20.0%
!!! CGTAGTTTAAAATTAATCAT+CGG + chr3_1:6026820-6026839 Msa0346090:three_prime_UTR 20.0%
!!! TTTAAAATTAATCATCGGTA+CGG + chr3_1:6026825-6026844 Msa0346090:three_prime_UTR 20.0%
!! ACTATCAATATTTAGAGAAA+GGG - chr3_1:6026888-6026907 None:intergenic 20.0%
!!! ACTCTTGTTTATATTTTATC+TGG + chr3_1:6026936-6026955 Msa0346090:three_prime_UTR 20.0%
! CTTGTTTATTGATGAAGTAA+TGG + chr3_1:6015078-6015097 Msa0346090:intron 25.0%
! CTCTATCATCATATTTACTT+TGG + chr3_1:6015166-6015185 Msa0346090:intron 25.0%
! TTATATGTATATGTGTGTGT+GGG - chr3_1:6015214-6015233 None:intergenic 25.0%
! TTTATATGTATATGTGTGTG+TGG - chr3_1:6015215-6015234 None:intergenic 25.0%
!!! TTTTTAGTGAAATGAGTTTC+AGG + chr3_1:6015396-6015415 Msa0346090:intron 25.0%
! ATTACTATATGTCTGAAAAC+AGG + chr3_1:6015527-6015546 Msa0346090:intron 25.0%
! TACAAAAAGAACAGTTCAAT+GGG - chr3_1:6015792-6015811 None:intergenic 25.0%
! ATACAAAAAGAACAGTTCAA+TGG - chr3_1:6015793-6015812 None:intergenic 25.0%
!!! TATTTAGGAGTGTTTACTTT+AGG + chr3_1:6015878-6015897 Msa0346090:intron 25.0%
!!! TTGTTTTGAGTCATTAATGA+TGG + chr3_1:6015937-6015956 Msa0346090:intron 25.0%
! TACTGTAACCAATAGAATTA+TGG - chr3_1:6016012-6016031 None:intergenic 25.0%
! TGTAAGTTATCCTGAAAAAT+AGG + chr3_1:6016188-6016207 Msa0346090:intron 25.0%
!!! GTAAAGTTCATTTGAGATTT+TGG + chr3_1:6016487-6016506 Msa0346090:intron 25.0%
!! CAATATATCTTCAGCTTTAA+TGG - chr3_1:6016715-6016734 None:intergenic 25.0%
! TTGATGTTAGCAAATTGATT+TGG + chr3_1:6016850-6016869 Msa0346090:intron 25.0%
! TAATACACATACATCAAAAG+GGG - chr3_1:6016976-6016995 None:intergenic 25.0%
! GTTAATACACATACATCAAA+AGG - chr3_1:6016978-6016997 None:intergenic 25.0%
! ATCTTAGATTAGATGACAAT+AGG + chr3_1:6017002-6017021 Msa0346090:intron 25.0%
! TAAAATAAAAATCGTTCCTC+TGG - chr3_1:6017083-6017102 None:intergenic 25.0%
!!! GAGGAACGATTTTTATTTTA+TGG + chr3_1:6017083-6017102 Msa0346090:intron 25.0%
!!! GCTATTTCTTTTTTGACAAT+TGG + chr3_1:6017115-6017134 Msa0346090:intron 25.0%
!! TTTTGACAATTGGATAAGAT+TGG + chr3_1:6017125-6017144 Msa0346090:intron 25.0%
! TTTCTCATAAATGCGATATA+AGG + chr3_1:6017154-6017173 Msa0346090:intron 25.0%
! TTGCAATCTGTTAGATATAT+CGG + chr3_1:6017226-6017245 Msa0346090:intron 25.0%
! CTTAAACTAGAAGAATAACA+AGG - chr3_1:6017257-6017276 None:intergenic 25.0%
! AGATAATTGTTGTAGTTTGA+AGG - chr3_1:6017703-6017722 None:intergenic 25.0%
! GATTAAATTCTTGTTAGGTT+TGG + chr3_1:6017800-6017819 Msa0346090:intron 25.0%
!! TAATCTTTTGAATGAAACGA+TGG + chr3_1:6017910-6017929 Msa0346090:intron 25.0%
!! AATCTTTTGAATGAAACGAT+GGG + chr3_1:6017911-6017930 Msa0346090:intron 25.0%
! ACAATTGTCTTACCTTTAAA+TGG + chr3_1:6018033-6018052 Msa0346090:intron 25.0%
! CAATTGTCTTACCTTTAAAT+GGG + chr3_1:6018034-6018053 Msa0346090:intron 25.0%
! AATTGTCTTACCTTTAAATG+GGG + chr3_1:6018035-6018054 Msa0346090:intron 25.0%
!! TTGAATTTTACCCCATTTAA+AGG - chr3_1:6018048-6018067 None:intergenic 25.0%
! GATTAAATTATTGTTAGGCT+TGG + chr3_1:6018126-6018145 Msa0346090:intron 25.0%
!!! TTTTACCATTTGGAATGAAT+TGG - chr3_1:6018591-6018610 None:intergenic 25.0%
!! ATCATGTTGCTTCTAATAAT+AGG - chr3_1:6018788-6018807 None:intergenic 25.0%
!! TATTAGAAGCAACATGATTT+TGG + chr3_1:6018790-6018809 Msa0346090:intron 25.0%
!! TTAAAGTGTTTATCCAAACA+TGG - chr3_1:6018859-6018878 None:intergenic 25.0%
! AAACTAATGAAAACAGCTTA+TGG - chr3_1:6018986-6019005 None:intergenic 25.0%
! AATACCAGTGATTAAATTGA+TGG + chr3_1:6019254-6019273 Msa0346090:intron 25.0%
! AAATCCATCAATTTAATCAC+TGG - chr3_1:6019261-6019280 None:intergenic 25.0%
!!! TTGATGGATTTCATATAGTT+TGG + chr3_1:6019270-6019289 Msa0346090:intron 25.0%
!!! TGATGGATTTCATATAGTTT+GGG + chr3_1:6019271-6019290 Msa0346090:intron 25.0%
! TTATAGTTTAGGGACTAAAT+AGG + chr3_1:6019314-6019333 Msa0346090:intron 25.0%
! TAGTTTAGAGACTAAATTGA+TGG + chr3_1:6019348-6019367 Msa0346090:intron 25.0%
! TAGTAATGAAATTGAAAGGA+AGG - chr3_1:6019702-6019721 None:intergenic 25.0%
! AGGTTAGTAATGAAATTGAA+AGG - chr3_1:6019706-6019725 None:intergenic 25.0%
!!! TGAAGTAATTTTTTCTTTCC+GGG - chr3_1:6020089-6020108 None:intergenic 25.0%
!! GTGTCTTAAAATAGAGTTTT+TGG + chr3_1:6020233-6020252 Msa0346090:intron 25.0%
!! ATATGTATTTCTAAGTGCAA+CGG - chr3_1:6020287-6020306 None:intergenic 25.0%
!!! GTTGTTTTCTTATGTTTCAA+AGG + chr3_1:6020883-6020902 Msa0346090:intron 25.0%
!! GATGTTTAAAATTATGCTTC+AGG + chr3_1:6020927-6020946 Msa0346090:intron 25.0%
!! GAAATTTTGGATGATTATTG+TGG + chr3_1:6021462-6021481 Msa0346090:intron 25.0%
!!! GTTTTCATTTGAAGTATATG+AGG + chr3_1:6021710-6021729 Msa0346090:intron 25.0%
! TTAATCTTCATTATAGTGCA+TGG - chr3_1:6021920-6021939 None:intergenic 25.0%
!! GGGATCAATTACATTTTTAA+AGG - chr3_1:6022257-6022276 None:intergenic 25.0%
!! ATTTAAGGAAGCTAATGTTT+TGG - chr3_1:6022803-6022822 None:intergenic 25.0%
! ACTGCAAGATGATATATTAT+TGG - chr3_1:6023353-6023372 None:intergenic 25.0%
! GCTACATATTGAAAACTATT+TGG - chr3_1:6023416-6023435 None:intergenic 25.0%
!! GCATTCACATTTTATATTGA+AGG + chr3_1:6023434-6023453 Msa0346090:intron 25.0%
! TATGCTATAAACTAAGAATG+TGG + chr3_1:6023588-6023607 Msa0346090:intron 25.0%
! CAGATATGAATCTTAATACA+AGG + chr3_1:6023637-6023656 Msa0346090:intron 25.0%
! ATATGAACATAATGCATTGA+AGG + chr3_1:6023686-6023705 Msa0346090:intron 25.0%
! CATATGATAAAACATTATGG+TGG - chr3_1:6023883-6023902 None:intergenic 25.0%
! ATAAATTATATATGTAGCCG+GGG + chr3_1:6024186-6024205 Msa0346090:intron 25.0%
!! TTTTACCACACAATTTAGTT+TGG + chr3_1:6024284-6024303 Msa0346090:intron 25.0%
! ATAAACCAAACTAAATTGTG+TGG - chr3_1:6024292-6024311 None:intergenic 25.0%
!!! AATTTTGAAAAATGAGAACC+TGG - chr3_1:6024729-6024748 None:intergenic 25.0%
! AACAACGAAATCATATAATC+CGG + chr3_1:6024830-6024849 Msa0346090:intron 25.0%
! TAATGAAAGATGAAAATGAC+AGG + chr3_1:6024989-6025008 Msa0346090:intron 25.0%
!! TAAAGGTAATTTTGCTCAAA+TGG + chr3_1:6025163-6025182 Msa0346090:intron 25.0%
! ATGGTTGCTTAATTTATCAT+AGG + chr3_1:6025182-6025201 Msa0346090:intron 25.0%
!!! ATTGGATCTCAACATTTTTT+TGG - chr3_1:6025347-6025366 None:intergenic 25.0%
! TCAACAAAATACTTCTTCTA+AGG + chr3_1:6025588-6025607 Msa0346090:intron 25.0%
!! GACCAAAATTTTCATCATTT+AGG + chr3_1:6025615-6025634 Msa0346090:intron 25.0%
!! GTCCTAAATGATGAAAATTT+TGG - chr3_1:6025620-6025639 None:intergenic 25.0%
!!! GTATTTGATTTGTTGATACA+TGG + chr3_1:6026002-6026021 Msa0346090:intron 25.0%
! TGTAGTTCTCTTATAATTCT+AGG + chr3_1:6026497-6026516 Msa0346090:intron 25.0%
! GTAGTTCTCTTATAATTCTA+GGG + chr3_1:6026498-6026517 Msa0346090:intron 25.0%
!! CATAGTTTAAAACATCGATA+TGG - chr3_1:6026537-6026556 None:intergenic 25.0%
! ATTCCATAAATACCAATAGA+AGG - chr3_1:6026573-6026592 None:intergenic 25.0%
!! AATGAATTACTTTGTTGTCT+TGG + chr3_1:6026590-6026609 Msa0346090:CDS 25.0%
! CACTATCAATATTTAGAGAA+AGG - chr3_1:6026889-6026908 None:intergenic 25.0%
TAAATATTCTTTCTACTGGG+AGG + chr3_1:6015231-6015250 Msa0346090:intron 30.0%
!!! TGTGATGTATGTGGTTTTTT+AGG + chr3_1:6015269-6015288 Msa0346090:intron 30.0%
ACTTAGGATACTAAAAGACT+CGG - chr3_1:6015365-6015384 None:intergenic 30.0%
CTTGTGATCAAGAAATAACT+TGG - chr3_1:6015601-6015620 None:intergenic 30.0%
ACAAAACATAGAACAGAAAC+AGG - chr3_1:6015644-6015663 None:intergenic 30.0%
TAGTAATACAGCATGATAAC+TGG - chr3_1:6015843-6015862 None:intergenic 30.0%
TAACTCAAACAAACATGAAG+AGG - chr3_1:6016214-6016233 None:intergenic 30.0%
TTCATAATGGTGTGAAACAT+TGG + chr3_1:6016255-6016274 Msa0346090:intron 30.0%
AGCATATGAACTTTCAAAGA+AGG + chr3_1:6016280-6016299 Msa0346090:intron 30.0%
ATATGAACTTTCAAAGAAGG+AGG + chr3_1:6016283-6016302 Msa0346090:CDS 30.0%
TATGAACTTTCAAAGAAGGA+GGG + chr3_1:6016284-6016303 Msa0346090:CDS 30.0%
! AGACATTCTGAAAAAGCATA+AGG + chr3_1:6016385-6016404 Msa0346090:CDS 30.0%
! GACATTCTGAAAAAGCATAA+GGG + chr3_1:6016386-6016405 Msa0346090:CDS 30.0%
TAAGGGAAACATTTCTATCA+AGG + chr3_1:6016403-6016422 Msa0346090:CDS 30.0%
ATTTCTACTTGTCAATGCTA+TGG + chr3_1:6016645-6016664 Msa0346090:intron 30.0%
AATGCTATGGTAATTGAAGA+AGG + chr3_1:6016658-6016677 Msa0346090:intron 30.0%
!!! TTGAAGAAGGTTTTGTTTTC+AGG + chr3_1:6016671-6016690 Msa0346090:intron 30.0%
GGTCAACTTTGTTCTTTATA+AGG - chr3_1:6016879-6016898 None:intergenic 30.0%
TTGTCAAAAAAGAAATAGCC+AGG - chr3_1:6017114-6017133 None:intergenic 30.0%
ATCGCATTTATGAGAAACAT+AGG - chr3_1:6017151-6017170 None:intergenic 30.0%
AATTAGATATTACAAGCCCT+GGG - chr3_1:6017346-6017365 None:intergenic 30.0%
TAATTAGATATTACAAGCCC+TGG - chr3_1:6017347-6017366 None:intergenic 30.0%
! CTACGTTTTCCTTAACATTA+TGG + chr3_1:6017413-6017432 Msa0346090:intron 30.0%
!! CAAAAAGCACCATAATGTTA+AGG - chr3_1:6017425-6017444 None:intergenic 30.0%
! AATCTTTTGAATGGAACGAT+GGG - chr3_1:6017784-6017803 None:intergenic 30.0%
! TAATCTTTTGAATGGAACGA+TGG - chr3_1:6017785-6017804 None:intergenic 30.0%
! GTTAGGTTTGGTTTAAATGA+CGG + chr3_1:6017812-6017831 Msa0346090:intron 30.0%
! ATTGAAGTGTCAAAAGAATG+AGG + chr3_1:6017836-6017855 Msa0346090:intron 30.0%
!! ATGAAGGTATTGAAATGTCA+AGG - chr3_1:6017868-6017887 None:intergenic 30.0%
! TGTTAGGCTGATTTAAATGA+AGG - chr3_1:6017884-6017903 None:intergenic 30.0%
GGTAATTCAAACTCGTTAAA+CGG - chr3_1:6017963-6017982 None:intergenic 30.0%
ACAATTGTCTTCCTCTAAAT+GGG - chr3_1:6017985-6018004 None:intergenic 30.0%
AACAATTGTCTTCCTCTAAA+TGG - chr3_1:6017986-6018005 None:intergenic 30.0%
! AATCTTTTGAATGGAACCAT+GGG - chr3_1:6018110-6018129 None:intergenic 30.0%
! TAATCTTTTGAATGGAACCA+TGG - chr3_1:6018111-6018130 None:intergenic 30.0%
! GTTAGGCTTGGTTTAAATAA+TGG + chr3_1:6018138-6018157 Msa0346090:intron 30.0%
! ATTGAAGTGTCAAAAGAATG+AGG + chr3_1:6017836-6017855 Msa0346090:intron 30.0%
!! ATAAAGGTATTGAAGTGTCA+AGG - chr3_1:6018194-6018213 None:intergenic 30.0%
! TTAACTATCGAAGTTTTCCT+CGG + chr3_1:6018312-6018331 Msa0346090:intron 30.0%
!! AATGCTGAAGTTTTCTAGAA+CGG - chr3_1:6018352-6018371 None:intergenic 30.0%
AGTAATTTACTCGTGTTTCT+CGG + chr3_1:6018392-6018411 Msa0346090:intron 30.0%
TGAAAATTGCTCTACACATT+TGG - chr3_1:6018423-6018442 None:intergenic 30.0%
TCAAAAATAATAAACTGGCG+AGG + chr3_1:6018440-6018459 Msa0346090:intron 30.0%
AACAACCAATTCATTCCAAA+TGG + chr3_1:6018583-6018602 Msa0346090:intron 30.0%
!!! AGAGAATTGGTTTTACCATT+TGG - chr3_1:6018601-6018620 None:intergenic 30.0%
!! ATTGACTTGAGTTTAACTAC+TGG - chr3_1:6019036-6019055 None:intergenic 30.0%
GATATTGGGGATTAAATTGA+TGG - chr3_1:6019232-6019251 None:intergenic 30.0%
! ATCACTGGTATTGAGATATT+GGG - chr3_1:6019246-6019265 None:intergenic 30.0%
! AATCACTGGTATTGAGATAT+TGG - chr3_1:6019247-6019266 None:intergenic 30.0%
! GATGGATTTCATATAGTTTG+GGG + chr3_1:6019272-6019291 Msa0346090:intron 30.0%
AATGCACAAGTCAATTCTAT+GGG - chr3_1:6019473-6019492 None:intergenic 30.0%
ATACTGAGAAAATACCTTAG+CGG - chr3_1:6019654-6019673 None:intergenic 30.0%
! ACCTGTTTTATCTTTCTCAT+AGG + chr3_1:6019722-6019741 Msa0346090:intron 30.0%
ACCTATGAGAAAGATAAAAC+AGG - chr3_1:6019726-6019745 None:intergenic 30.0%
! AAAATACCTTTGGAGAAAAC+AGG - chr3_1:6019774-6019793 None:intergenic 30.0%
!!! TATTTTGGTTGACAAATTCC+CGG + chr3_1:6020068-6020087 Msa0346090:intron 30.0%
!!! AACTCTATTTTAAGACACCA+CGG - chr3_1:6020231-6020250 None:intergenic 30.0%
GAGTCAAATTCTCATCATTT+AGG + chr3_1:6020318-6020337 Msa0346090:intron 30.0%
ACAGTTCTTTACATGTGTAT+TGG + chr3_1:6020364-6020383 Msa0346090:intron 30.0%
TACATGTGTATTGGATATCT+TGG + chr3_1:6020373-6020392 Msa0346090:intron 30.0%
ACATGTGTATTGGATATCTT+GGG + chr3_1:6020374-6020393 Msa0346090:intron 30.0%
TAGAAAATGAAGAACCAATC+AGG - chr3_1:6020412-6020431 None:intergenic 30.0%
TTCATTCCTTCTAATACCAA+AGG - chr3_1:6020469-6020488 None:intergenic 30.0%
! TATCCAGGAACATATTGATT+TGG + chr3_1:6020614-6020633 Msa0346090:CDS 30.0%
!! ATCCAGGAACATATTGATTT+GGG + chr3_1:6020615-6020634 Msa0346090:CDS 30.0%
GATAAACCACAATTGAACTT+AGG - chr3_1:6020769-6020788 None:intergenic 30.0%
! TATGGATTTCTTTGTTGTCT+TGG + chr3_1:6020976-6020995 Msa0346090:CDS 30.0%
TGGTTCCAAGTTAAATATGA+AGG + chr3_1:6021088-6021107 Msa0346090:intron 30.0%
TCACACCTTCATATTTAACT+TGG - chr3_1:6021096-6021115 None:intergenic 30.0%
!! GTATGAATACTACTTTTGAC+CGG + chr3_1:6021234-6021253 Msa0346090:intron 30.0%
! TCGAGTAAACCTTGAAATTT+TGG + chr3_1:6021449-6021468 Msa0346090:intron 30.0%
TGACATTTGTGATTGGAATA+AGG - chr3_1:6021498-6021517 None:intergenic 30.0%
! GTCGTTCTAAACAAATTCTT+CGG - chr3_1:6021608-6021627 None:intergenic 30.0%
! GAAGAATTTGTTTAGAACGA+CGG + chr3_1:6021607-6021626 Msa0346090:intron 30.0%
GAAATACAAAGTCTTCAACT+AGG - chr3_1:6021825-6021844 None:intergenic 30.0%
AGTTGAAGACTTTGTATTTC+AGG + chr3_1:6021825-6021844 Msa0346090:intron 30.0%
ATCTCATGTAAATTCTGCAA+TGG + chr3_1:6022055-6022074 Msa0346090:intron 30.0%
TTAACAATTGATGTGTAGCA+TGG + chr3_1:6022093-6022112 Msa0346090:intron 30.0%
!!! ACGTTTTTGGTAAAAACTCA+CGG - chr3_1:6022175-6022194 None:intergenic 30.0%
! TCTAAACTATGCAACGTTTT+TGG - chr3_1:6022188-6022207 None:intergenic 30.0%
!! ATAGTGACATTTTGATCTGA+GGG - chr3_1:6022277-6022296 None:intergenic 30.0%
!! TATTGTTTTTCCACATAGCT+TGG + chr3_1:6022311-6022330 Msa0346090:intron 30.0%
CGACAAATGTTTCTTATTCA+GGG - chr3_1:6022337-6022356 None:intergenic 30.0%
ACGACAAATGTTTCTTATTC+AGG - chr3_1:6022338-6022357 None:intergenic 30.0%
GGAAGTAAAAAATTATCACC+AGG - chr3_1:6022404-6022423 None:intergenic 30.0%
!!! GTGATAATTTTTTACTTCCG+AGG + chr3_1:6022405-6022424 Msa0346090:intron 30.0%
TTTGAATCAAAGTAGTTCCT+CGG - chr3_1:6022425-6022444 None:intergenic 30.0%
!! GAACAAAAGCTTTGTTCATA+TGG + chr3_1:6022525-6022544 Msa0346090:intron 30.0%
TACTATTCTTAGAGTCGAAT+TGG - chr3_1:6022552-6022571 None:intergenic 30.0%
CTAAGAATAGTAGTATTTCC+AGG + chr3_1:6022560-6022579 Msa0346090:intron 30.0%
!! AAAATTAATTTGCTCACTCC+TGG - chr3_1:6022581-6022600 None:intergenic 30.0%
ATGTCAACAACAGAATGAAA+CGG + chr3_1:6022714-6022733 Msa0346090:intron 30.0%
TACCTTCTCCAAAAGTAAAA+AGG + chr3_1:6022740-6022759 Msa0346090:intron 30.0%
!! TTCCTTTTTACTTTTGGAGA+AGG - chr3_1:6022745-6022764 None:intergenic 30.0%
TGCAATTGCATCATTATGAA+CGG - chr3_1:6022967-6022986 None:intergenic 30.0%
TGAGTTACACTGAACTAATT+TGG + chr3_1:6023053-6023072 Msa0346090:intron 30.0%
!! TGGTCATTGAAAGTATTGTT+AGG + chr3_1:6023111-6023130 Msa0346090:intron 30.0%
!!! ATCAAGTTTTGAAGAAACTC+AGG - chr3_1:6023142-6023161 None:intergenic 30.0%
AATATTTCATTTAGTGGCCT+TGG - chr3_1:6023279-6023298 None:intergenic 30.0%
!! ACTATTTGGTTGTTATTTGG+TGG - chr3_1:6023402-6023421 None:intergenic 30.0%
CCAAAAGAACTACAATCAAA+GGG - chr3_1:6023841-6023860 None:intergenic 30.0%
TCCAAAAGAACTACAATCAA+AGG - chr3_1:6023842-6023861 None:intergenic 30.0%
TAAATTATATATGTAGCCGG+GGG + chr3_1:6024187-6024206 Msa0346090:intron 30.0%
TTACTAATCAAGTGAGTATG+CGG - chr3_1:6024381-6024400 None:intergenic 30.0%
AATGTTCTCTCTCAAACATT+AGG + chr3_1:6024586-6024605 Msa0346090:CDS 30.0%
AACTGTTGAATAATCCATTG+AGG + chr3_1:6025024-6025043 Msa0346090:CDS 30.0%
ACTGTTGAATAATCCATTGA+GGG + chr3_1:6025025-6025044 Msa0346090:CDS 30.0%
! AATTACCTTTAGAGAGAACA+GGG - chr3_1:6025154-6025173 None:intergenic 30.0%
! AAATTACCTTTAGAGAGAAC+AGG - chr3_1:6025155-6025174 None:intergenic 30.0%
! AGAGTTTTACCACCAATTTT+AGG + chr3_1:6025260-6025279 Msa0346090:intron 30.0%
!!! ACATTTTTTTGGAGCAAATC+AGG - chr3_1:6025336-6025355 None:intergenic 30.0%
TATATAATAAAGGGGATCCT+TGG + chr3_1:6025379-6025398 Msa0346090:intron 30.0%
!! TACACATTCAAGTTTTGTAC+AGG + chr3_1:6025436-6025455 Msa0346090:intron 30.0%
TGTACTTGAGAACCATAAAA+GGG - chr3_1:6025526-6025545 None:intergenic 30.0%
ATGTACTTGAGAACCATAAA+AGG - chr3_1:6025527-6025546 None:intergenic 30.0%
! TTTTATGGTTCTCAAGTACA+TGG + chr3_1:6025526-6025545 Msa0346090:intron 30.0%
TTTATGGTTCTCAAGTACAT+GGG + chr3_1:6025527-6025546 Msa0346090:intron 30.0%
TACATGTGTATTGGACAATT+AGG + chr3_1:6025678-6025697 Msa0346090:intron 30.0%
ACATGTGTATTGGACAATTA+GGG + chr3_1:6025679-6025698 Msa0346090:intron 30.0%
TTCATTCCTTCTATTACCAA+AGG - chr3_1:6025771-6025790 None:intergenic 30.0%
TCAAGGAATATAAACTGTTG+AGG + chr3_1:6025858-6025877 Msa0346090:CDS 30.0%
!!! TTCAGTGATAATGGTTCTTT+TGG + chr3_1:6025887-6025906 Msa0346090:CDS 30.0%
TATTCAGGATCATATTGAAC+TGG + chr3_1:6025916-6025935 Msa0346090:CDS 30.0%
ATTCAGGATCATATTGAACT+GGG + chr3_1:6025917-6025936 Msa0346090:CDS 30.0%
! CATCATTTCACATTGATTAG+CGG - chr3_1:6026081-6026100 None:intergenic 30.0%
TGGTTGTTTATGATCTAATC+TGG + chr3_1:6026107-6026126 Msa0346090:intron 30.0%
!! ACAATGTTTTGTTCCACAAT+CGG + chr3_1:6026203-6026222 Msa0346090:intron 30.0%
!! ATTGCTTTAGGTTTTTGATG+CGG + chr3_1:6026273-6026292 Msa0346090:intron 30.0%
GATCCTTCTATTGGTATTTA+TGG + chr3_1:6026567-6026586 Msa0346090:CDS 30.0%
TTCTGTATATCTCATCACCA+GGG - chr3_1:6014855-6014874 None:intergenic 35.0%
TGGTACATTGTCAATGTTTG+AGG + chr3_1:6014876-6014895 Msa0346090:CDS 35.0%
TCTTTCTACTGTGATGTATG+TGG + chr3_1:6015260-6015279 Msa0346090:intron 35.0%
!!! TGTGGTTTTTTAGGTGCAAT+AGG + chr3_1:6015278-6015297 Msa0346090:intron 35.0%
ACCCGTCTTCCAAATTTAAA+TGG + chr3_1:6015339-6015358 Msa0346090:intron 35.0%
GCCATTTAAATTTGGAAGAC+GGG - chr3_1:6015343-6015362 None:intergenic 35.0%
GGCCATTTAAATTTGGAAGA+CGG - chr3_1:6015344-6015363 None:intergenic 35.0%
AAGACTCGGCCATTTAAATT+TGG - chr3_1:6015351-6015370 None:intergenic 35.0%
AACTGAGTGTTCTCAAAACT+CGG - chr3_1:6015434-6015453 None:intergenic 35.0%
! TATGTCTGAAAACAGGTTGA+TGG + chr3_1:6015534-6015553 Msa0346090:intron 35.0%
GCAAGAAGAACAAGGTTTAT+GGG + chr3_1:6015556-6015575 Msa0346090:CDS 35.0%
!! TGGGCAGAATCTTTGTTATT+TGG + chr3_1:6015575-6015594 Msa0346090:CDS 35.0%
TTGTGTGAATGTGATGAAAG+AGG + chr3_1:6015660-6015679 Msa0346090:CDS 35.0%
TCGAAAAATATCCAACCATG+TGG - chr3_1:6015689-6015708 None:intergenic 35.0%
!! CATGGTTGGATATTTTTCGA+AGG + chr3_1:6015689-6015708 Msa0346090:CDS 35.0%
CGTAAAGGAAAAACATTCTG+AGG + chr3_1:6016088-6016107 Msa0346090:intron 35.0%
! TTCTGAGGAATCCTACAATT+TGG + chr3_1:6016103-6016122 Msa0346090:CDS 35.0%
! ATTTTCCATAGCCTTTCCTT+TGG - chr3_1:6016154-6016173 None:intergenic 35.0%
TCCTGTATTGAATCAGTTCT+AGG - chr3_1:6016752-6016771 None:intergenic 35.0%
! GAACTGATTCAATACAGGAA+AGG + chr3_1:6016753-6016772 Msa0346090:CDS 35.0%
TGTGCTTGTGTATAAAGTGT+AGG + chr3_1:6016925-6016944 Msa0346090:intron 35.0%
TTGTGTATAAAGTGTAGGCT+AGG + chr3_1:6016930-6016949 Msa0346090:intron 35.0%
TGTAGGCTAGGTTTATTAGT+TGG + chr3_1:6016942-6016961 Msa0346090:intron 35.0%
! GTATTGATCCTATTATCCAG+AGG + chr3_1:6017064-6017083 Msa0346090:intron 35.0%
AAATCGTTCCTCTGGATAAT+AGG - chr3_1:6017075-6017094 None:intergenic 35.0%
ACAATTATCTTACCCCTGAA+TGG + chr3_1:6017713-6017732 Msa0346090:intron 35.0%
CAATTATCTTACCCCTGAAT+GGG + chr3_1:6017714-6017733 Msa0346090:intron 35.0%
AATTATCTTACCCCTGAATG+GGG + chr3_1:6017715-6017734 Msa0346090:intron 35.0%
TTTGAATTTACCCCATTCAG+GGG - chr3_1:6017728-6017747 None:intergenic 35.0%
GTTTGAATTTACCCCATTCA+GGG - chr3_1:6017729-6017748 None:intergenic 35.0%
AGTTTGAATTTACCCCATTC+AGG - chr3_1:6017730-6017749 None:intergenic 35.0%
GTTTGAATTACCCCATTTAG+AGG + chr3_1:6017971-6017990 Msa0346090:intron 35.0%
CAATTGTCTTCCTCTAAATG+GGG - chr3_1:6017984-6018003 None:intergenic 35.0%
AGGAAGACAATTGTTGTAGT+TGG + chr3_1:6017991-6018010 Msa0346090:intron 35.0%
GGTAAGACAATTGTTGTAGT+TGG - chr3_1:6018027-6018046 None:intergenic 35.0%
! TGTTAGGCTGCTTTAGATAA+AGG - chr3_1:6018210-6018229 None:intergenic 35.0%
TAAATTACTCAAATGCCCCT+CGG - chr3_1:6018381-6018400 None:intergenic 35.0%
! GTTGTTCTTTCTGAAGAGAA+CGG - chr3_1:6018569-6018588 None:intergenic 35.0%
GAAGAGAAACGAAAGAGAAT+TGG - chr3_1:6018614-6018633 None:intergenic 35.0%
!! TCTCCACATTTTGATCTGTT+TGG + chr3_1:6018814-6018833 Msa0346090:intron 35.0%
GATCCAAACAGATCAAAATG+TGG - chr3_1:6018820-6018839 None:intergenic 35.0%
!! CATTTTGATCTGTTTGGATC+TGG + chr3_1:6018820-6018839 Msa0346090:intron 35.0%
!! ATGGATTTTTGTTTCCTTCC+GGG - chr3_1:6019213-6019232 None:intergenic 35.0%
!! GATGGATTTTTGTTTCCTTC+CGG - chr3_1:6019214-6019233 None:intergenic 35.0%
! TCACTGGTATTGAGATATTG+GGG - chr3_1:6019245-6019264 None:intergenic 35.0%
CAATGCACAAGTCAATTCTA+TGG - chr3_1:6019474-6019493 None:intergenic 35.0%
!! AATTGACTTGTGCATTGCAT+TGG + chr3_1:6019477-6019496 Msa0346090:intron 35.0%
AGAAACTGTCTAATCCAATG+AGG + chr3_1:6019561-6019580 Msa0346090:CDS 35.0%
GAAACTGTCTAATCCAATGA+GGG + chr3_1:6019562-6019581 Msa0346090:CDS 35.0%
ATGTACAGAACATGTCTACT+AGG - chr3_1:6019892-6019911 None:intergenic 35.0%
!!! ATGGAGTTTTTTATTGCCAC+CGG + chr3_1:6020200-6020219 Msa0346090:intron 35.0%
TATTGTGCTTATTGACAGCT+AGG + chr3_1:6020430-6020449 Msa0346090:intron 35.0%
TCCTTCTAATACCAAAGGAA+CGG - chr3_1:6020464-6020483 None:intergenic 35.0%
TTCCCAAATCAATATGTTCC+TGG - chr3_1:6020620-6020639 None:intergenic 35.0%
ATACCATAAATACCAGTGGA+AGG - chr3_1:6020959-6020978 None:intergenic 35.0%
TTCCACTGGTATTTATGGTA+TGG + chr3_1:6020958-6020977 Msa0346090:CDS 35.0%
ATCCATACCATAAATACCAG+TGG - chr3_1:6020963-6020982 None:intergenic 35.0%
!! TTTAACTTGGAACCACTTCA+TGG - chr3_1:6021083-6021102 None:intergenic 35.0%
ATCTCACTAAACAATTGCCT+GGG - chr3_1:6021131-6021150 None:intergenic 35.0%
AGTAGCTTAACTTTCTGCAT+TGG + chr3_1:6021212-6021231 Msa0346090:intron 35.0%
AAACAAACAGCTTACGTAAC+CGG - chr3_1:6021256-6021275 None:intergenic 35.0%
CTGTAACATAAGCTTGCAAT+CGG - chr3_1:6021319-6021338 None:intergenic 35.0%
CATTTGTGATTGGAATAAGG+AGG - chr3_1:6021495-6021514 None:intergenic 35.0%
TCCAATCACAAATGTCATTC+AGG + chr3_1:6021501-6021520 Msa0346090:intron 35.0%
ACCTGAATGACATTTGTGAT+TGG - chr3_1:6021505-6021524 None:intergenic 35.0%
ATATGTGTCGAATGACTGAA+AGG + chr3_1:6021527-6021546 Msa0346090:intron 35.0%
! ATGAGTCTGAATGACGTTTT+AGG + chr3_1:6021550-6021569 Msa0346090:intron 35.0%
!!! GAATGACGTTTTAGGATTTC+AGG + chr3_1:6021558-6021577 Msa0346090:intron 35.0%
TCAGGTGTTAGTATAATACG+AGG + chr3_1:6021576-6021595 Msa0346090:intron 35.0%
!! CATAGTGACATTTTGATCTG+AGG - chr3_1:6022278-6022297 None:intergenic 35.0%
TTAACTACATGAAAGGGTAG+AGG + chr3_1:6022367-6022386 Msa0346090:intron 35.0%
AATTTGGCGACAAATCTTTG+AGG + chr3_1:6022496-6022515 Msa0346090:intron 35.0%
! ACTAAACCCTAACTAGTTCT+AGG + chr3_1:6022621-6022640 Msa0346090:intron 35.0%
CATAGTCCTAGAACTAGTTA+GGG - chr3_1:6022630-6022649 None:intergenic 35.0%
TCATAGTCCTAGAACTAGTT+AGG - chr3_1:6022631-6022650 None:intergenic 35.0%
!! AACTAGTTCTAGGACTATGA+TGG + chr3_1:6022631-6022650 Msa0346090:intron 35.0%
ATTGAGCTACATAGAAGCAA+AGG + chr3_1:6022833-6022852 Msa0346090:intron 35.0%
TTCGCTAACTAGAATTACCA+AGG + chr3_1:6023259-6023278 Msa0346090:intron 35.0%
AACAAAGTCGCATGTTTGTA+CGG - chr3_1:6023312-6023331 None:intergenic 35.0%
TGACACTTATATGTAGACAC+GGG - chr3_1:6023515-6023534 None:intergenic 35.0%
GTGACACTTATATGTAGACA+CGG - chr3_1:6023516-6023535 None:intergenic 35.0%
! ATTTGCATGATTTGTCTGCT+GGG - chr3_1:6023569-6023588 None:intergenic 35.0%
! TATTTGCATGATTTGTCTGC+TGG - chr3_1:6023570-6023589 None:intergenic 35.0%
! CCCTTTGATTGTAGTTCTTT+TGG + chr3_1:6023838-6023857 Msa0346090:intron 35.0%
AAATTATATATGTAGCCGGG+GGG + chr3_1:6024188-6024207 Msa0346090:intron 35.0%
!!! ATTTTTGTTATTCGGAGCGA+CGG - chr3_1:6024524-6024543 None:intergenic 35.0%
CTCTCTCAAACATTAGGTTA+TGG + chr3_1:6024592-6024611 Msa0346090:CDS 35.0%
CGCAAAATGTTGGATTCAAA+GGG - chr3_1:6024658-6024677 None:intergenic 35.0%
TCGCAAAATGTTGGATTCAA+AGG - chr3_1:6024659-6024678 None:intergenic 35.0%
TCGGATAATTCGCAAAATGT+TGG - chr3_1:6024668-6024687 None:intergenic 35.0%
CTAGAAACTCCATTTCGTTT+CGG - chr3_1:6024687-6024706 None:intergenic 35.0%
ACATAATTCGCAATTCACGT+TGG - chr3_1:6024765-6024784 None:intergenic 35.0%
ATTGACACGTTGAAATACAC+CGG - chr3_1:6024852-6024871 None:intergenic 35.0%
! ATTACCTTTAGAGAGAACAG+GGG - chr3_1:6025153-6025172 None:intergenic 35.0%
AGTTGGGTAAGACCTAAAAT+TGG - chr3_1:6025275-6025294 None:intergenic 35.0%
AGAGACTAATTTCTCGAGTT+GGG - chr3_1:6025291-6025310 None:intergenic 35.0%
TAGAGACTAATTTCTCGAGT+TGG - chr3_1:6025292-6025311 None:intergenic 35.0%
! TTTTGTACAGGTCACCAAAA+TGG + chr3_1:6025448-6025467 Msa0346090:intron 35.0%
TACACATGTAAACTACGCTA+TGG - chr3_1:6025668-6025687 None:intergenic 35.0%
AGCGTAGTTTACATGTGTAT+TGG + chr3_1:6025669-6025688 Msa0346090:intron 35.0%
TGTATTGGACAATTAGGGTT+TGG + chr3_1:6025684-6025703 Msa0346090:intron 35.0%
GTATTGGACAATTAGGGTTT+GGG + chr3_1:6025685-6025704 Msa0346090:intron 35.0%
TTCTGATTGTTCTTTCACTC+TGG + chr3_1:6025714-6025733 Msa0346090:intron 35.0%
TCCTTCTATTACCAAAGGAA+CGG - chr3_1:6025766-6025785 None:intergenic 35.0%
AGGAGAAACTTCAGTGATAA+TGG + chr3_1:6025878-6025897 Msa0346090:CDS 35.0%
!!! GATAATGGTTCTTTTGGCTT+CGG + chr3_1:6025893-6025912 Msa0346090:CDS 35.0%
AATGTGAAATGATGTGATCG+TGG + chr3_1:6026087-6026106 Msa0346090:intron 35.0%
AATCTGGTGATATCAGTTTG+TGG + chr3_1:6026123-6026142 Msa0346090:intron 35.0%
TTTGTTCCACAATCGGAATT+CGG + chr3_1:6026210-6026229 Msa0346090:intron 35.0%
!! TCGGAAGTACCAATACTAAT+TGG + chr3_1:6026229-6026248 Msa0346090:intron 35.0%
CAATCAAACTGAGTTAGAGA+TGG - chr3_1:6026379-6026398 None:intergenic 35.0%
CATCTCTAACTCAGTTTGAT+TGG + chr3_1:6026377-6026396 Msa0346090:intron 35.0%
CAACAAAGATACAGAGGAAA+AGG - chr3_1:6026473-6026492 None:intergenic 35.0%
CAACAACAACAAAGATACAG+AGG - chr3_1:6026479-6026498 None:intergenic 35.0%
!! GATGTTTTAAACTATGCTGC+AGG + chr3_1:6026541-6026560 Msa0346090:intron 35.0%
TGGTTCCAAGGTAAATATGA+AGG + chr3_1:6026702-6026721 Msa0346090:CDS 35.0%
TCACACCTTCATATTTACCT+TGG - chr3_1:6026710-6026729 None:intergenic 35.0%
TTTAGTCGTAGCCATTCTTA+AGG + chr3_1:6026751-6026770 Msa0346090:exon 35.0%
TAGAACTCAGTCCTTAAGAA+TGG - chr3_1:6026765-6026784 None:intergenic 35.0%
ATCACTGAATTCGATGACAT+TGG - chr3_1:6026914-6026933 None:intergenic 35.0%
TCTGTATATCTCATCACCAG+GGG - chr3_1:6014854-6014873 None:intergenic 40.0%
CTTCTGTATATCTCATCACC+AGG - chr3_1:6014856-6014875 None:intergenic 40.0%
GGTGATGAGATATACAGAAG+TGG + chr3_1:6014856-6014875 Msa0346090:CDS 40.0%
TGATAGAGACGATGAGCATT+TGG - chr3_1:6015154-6015173 None:intergenic 40.0%
TTTGAGAACACTCAGTTGTC+TGG + chr3_1:6015437-6015456 Msa0346090:intron 40.0%
ATTGTTGAGTGCAAGAGAGT+CGG + chr3_1:6015466-6015485 Msa0346090:intron 40.0%
GGCAAGAAGAACAAGGTTTA+TGG + chr3_1:6015555-6015574 Msa0346090:CDS 40.0%
CAGGTCAACATCATAGTAGA+GGG - chr3_1:6015625-6015644 None:intergenic 40.0%
ACAGGTCAACATCATAGTAG+AGG - chr3_1:6015626-6015645 None:intergenic 40.0%
!! TACACAGTCTTTGAAGTAGC+AGG + chr3_1:6015816-6015835 Msa0346090:intron 40.0%
!! ACACAGTCTTTGAAGTAGCA+GGG + chr3_1:6015817-6015836 Msa0346090:intron 40.0%
GAGGATACATGCCAAATTGT+AGG - chr3_1:6016117-6016136 None:intergenic 40.0%
!! CATGAAGAGGCCTATTTTTC+AGG - chr3_1:6016201-6016220 None:intergenic 40.0%
TCAAAGAAGGAGGGAAAAGT+TGG + chr3_1:6016293-6016312 Msa0346090:CDS 40.0%
!! GAAAAGTTGGTACACCTGAA+AGG + chr3_1:6016306-6016325 Msa0346090:CDS 40.0%
TGCTAAGCTACAGAGGATAT+TGG + chr3_1:6016348-6016367 Msa0346090:CDS 40.0%
CAGAATGTCTAAAAGAACCC+TGG - chr3_1:6016375-6016394 None:intergenic 40.0%
GCTGGGATATATGAGATGTT+TGG + chr3_1:6016573-6016592 Msa0346090:intron 40.0%
! GCCTAGAACTGATTCAATAC+AGG + chr3_1:6016748-6016767 Msa0346090:CDS 40.0%
! TTGTGCGGATCCAAAAGTTT+TGG + chr3_1:6016788-6016807 Msa0346090:CDS 40.0%
! AGATGGCGATCCAAAACTTT+TGG - chr3_1:6016801-6016820 None:intergenic 40.0%
CATCACAGCAGTTCTTTGAT+GGG - chr3_1:6016900-6016919 None:intergenic 40.0%
ACATCACAGCAGTTCTTTGA+TGG - chr3_1:6016901-6016920 None:intergenic 40.0%
GAATGAAACGATGGGAATGT+CGG + chr3_1:6017919-6017938 Msa0346090:intron 40.0%
AACGTTGGAGTCATGTTGTT+TGG - chr3_1:6018076-6018095 None:intergenic 40.0%
! GGTATTGAAGTGTCAAGGAA+TGG - chr3_1:6018189-6018208 None:intergenic 40.0%
GCTTCTACCAGATTTGTAGT+AGG + chr3_1:6018276-6018295 Msa0346090:intron 40.0%
ATGCGTTCCTACTACAAATC+TGG - chr3_1:6018286-6018305 None:intergenic 40.0%
GATTTGTAGTAGGAACGCAT+TGG + chr3_1:6018286-6018305 Msa0346090:intron 40.0%
ATAATAAACTGGCGAGGTGA+AGG + chr3_1:6018446-6018465 Msa0346090:intron 40.0%
TGATCTGTTTGGATCTGGTT+TGG + chr3_1:6018825-6018844 Msa0346090:intron 40.0%
!! TTGGATCTGGTTTGGTATCT+AGG + chr3_1:6018833-6018852 Msa0346090:intron 40.0%
TTTGGTATCTAGGCCATGTT+TGG + chr3_1:6018843-6018862 Msa0346090:intron 40.0%
AGTAAACCATCATTCAGTCC+CGG + chr3_1:6019192-6019211 Msa0346090:intron 40.0%
TTAGGGACTAAATAGGTGAG+AGG + chr3_1:6019321-6019340 Msa0346090:intron 40.0%
GATAGTAAACAAGCAGACGT+TGG - chr3_1:6019503-6019522 None:intergenic 40.0%
! TGCACTTTGATTTCCCTCAT+TGG - chr3_1:6019578-6019597 None:intergenic 40.0%
TAGGTTCTTGAACAGCTAAG+TGG + chr3_1:6019741-6019760 Msa0346090:intron 40.0%
! CAAACACCTGTTTTCTCCAA+AGG + chr3_1:6019765-6019784 Msa0346090:CDS 40.0%
AACTCCATCGCAATCTTCTA+TGG - chr3_1:6020188-6020207 None:intergenic 40.0%
GGTTGTGTTTGTATCCTGAT+TGG + chr3_1:6020395-6020414 Msa0346090:intron 40.0%
CTTATTGACAGCTAGGTACA+CGG + chr3_1:6020437-6020456 Msa0346090:intron 40.0%
TCCGTTCCTTTGGTATTAGA+AGG + chr3_1:6020460-6020479 Msa0346090:CDS 40.0%
TCAAGGAATATGAGCTGTTG+AGG + chr3_1:6020556-6020575 Msa0346090:CDS 40.0%
AGGAGAAACTTCAGTGATAC+CGG + chr3_1:6020576-6020595 Msa0346090:CDS 40.0%
GCTCTACCTAAGTTCAATTG+TGG + chr3_1:6020760-6020779 Msa0346090:intron 40.0%
GATCCTTCCACTGGTATTTA+TGG + chr3_1:6020953-6020972 Msa0346090:CDS 40.0%
AATCCAACATCGTGTCACAA+AGG + chr3_1:6021051-6021070 Msa0346090:CDS 40.0%
GATCTCACTAAACAATTGCC+TGG - chr3_1:6021132-6021151 None:intergenic 40.0%
GGCAATTGTTTAGTGAGATC+AGG + chr3_1:6021132-6021151 Msa0346090:intron 40.0%
ACAATTGATGTGTAGCATGG+AGG + chr3_1:6022096-6022115 Msa0346090:intron 40.0%
GCTAACATTTGTCAGTCAAG+AGG - chr3_1:6022136-6022155 None:intergenic 40.0%
CGCAAGAAACTTTGTAGAAG+TGG - chr3_1:6022910-6022929 None:intergenic 40.0%
ATGTATCAGTTGCTCCTTGT+TGG + chr3_1:6023222-6023241 Msa0346090:intron 40.0%
GCTGATAAACATCTCCAACA+AGG - chr3_1:6023239-6023258 None:intergenic 40.0%
!! TGGTTGTTATTTGGTGGACT+TGG - chr3_1:6023396-6023415 None:intergenic 40.0%
! TTTGCATGATTTGTCTGCTG+GGG - chr3_1:6023568-6023587 None:intergenic 40.0%
GGTAATAGGATGCTTAGCAT+TGG - chr3_1:6023784-6023803 None:intergenic 40.0%
TACAATCAAAGGGTCCTAAG+GGG - chr3_1:6023831-6023850 None:intergenic 40.0%
CTACAATCAAAGGGTCCTAA+GGG - chr3_1:6023832-6023851 None:intergenic 40.0%
ACTACAATCAAAGGGTCCTA+AGG - chr3_1:6023833-6023852 None:intergenic 40.0%
AATTATATATGTAGCCGGGG+GGG + chr3_1:6024189-6024208 Msa0346090:intron 40.0%
!! TTCGGTTTCTTTTTAAGGGG+GGG - chr3_1:6024358-6024377 None:intergenic 40.0%
!! GTTCGGTTTCTTTTTAAGGG+GGG - chr3_1:6024359-6024378 None:intergenic 40.0%
!! GGTTCGGTTTCTTTTTAAGG+GGG - chr3_1:6024360-6024379 None:intergenic 40.0%
!!! CGGTTCGGTTTCTTTTTAAG+GGG - chr3_1:6024361-6024380 None:intergenic 40.0%
!!! GCGGTTCGGTTTCTTTTTAA+GGG - chr3_1:6024362-6024381 None:intergenic 40.0%
!!! TGCGGTTCGGTTTCTTTTTA+AGG - chr3_1:6024363-6024382 None:intergenic 40.0%
AATCAAGTGAGTATGCGGTT+CGG - chr3_1:6024376-6024395 None:intergenic 40.0%
CGAACAAGAACAGACATGTT+TGG - chr3_1:6024547-6024566 None:intergenic 40.0%
GCGAATTATCCGAAACGAAA+TGG + chr3_1:6024675-6024694 Msa0346090:CDS 40.0%
TGAAAAATGAGAACCTGGTG+TGG - chr3_1:6024724-6024743 None:intergenic 40.0%
TATGAAACACAGACACTCCT+TGG - chr3_1:6024896-6024915 None:intergenic 40.0%
TGCACTTTGATATCCCTCAA+TGG - chr3_1:6025041-6025060 None:intergenic 40.0%
ATGTCTACTTTCACCACCAA+CGG - chr3_1:6025084-6025103 None:intergenic 40.0%
TGGGTAAGACCTAAAATTGG+TGG - chr3_1:6025272-6025291 None:intergenic 40.0%
AATTGTTGTCCGTGACTGAA+AGG + chr3_1:6025413-6025432 Msa0346090:intron 40.0%
GAATGTGTACCTTTCAGTCA+CGG - chr3_1:6025425-6025444 None:intergenic 40.0%
TTACTACATCATGCATCTCG+AGG - chr3_1:6025559-6025578 None:intergenic 40.0%
TCTATTACCAAAGGAACGGA+CGG - chr3_1:6025762-6025781 None:intergenic 40.0%
! TCCGTTCCTTTGGTAATAGA+AGG + chr3_1:6025762-6025781 Msa0346090:CDS 40.0%
!!! TTCTTTTGGCTTCGGTATTC+AGG + chr3_1:6025901-6025920 Msa0346090:CDS 40.0%
TGCAGGTATGATCCTTCTAT+TGG + chr3_1:6026558-6026577 Msa0346090:intron 40.0%
TTTACCTTGGAACCACTTCA+TGG - chr3_1:6026697-6026716 None:intergenic 40.0%
! ATGAAGGTGTGATCCTAAAC+AGG + chr3_1:6021104-6021123 Msa0346090:intron 40.0%
CTGTATATCTCATCACCAGG+GGG - chr3_1:6014853-6014872 None:intergenic 45.0%
AGACGATGAGCATTTGGAGA+AGG - chr3_1:6015148-6015167 None:intergenic 45.0%
!! GGTTGATGGCAAGAAGAACA+AGG + chr3_1:6015548-6015567 Msa0346090:intron 45.0%
TGATGAAAGAGGATGCCACA+TGG + chr3_1:6015671-6015690 Msa0346090:CDS 45.0%
TTTCCTTTGGTAAGGTGGGA+GGG - chr3_1:6016141-6016160 None:intergenic 45.0%
AGCCTTTCCTTTGGTAAGGT+GGG - chr3_1:6016145-6016164 None:intergenic 45.0%
TAGCCTTTCCTTTGGTAAGG+TGG - chr3_1:6016146-6016165 None:intergenic 45.0%
CCATAGCCTTTCCTTTGGTA+AGG - chr3_1:6016149-6016168 None:intergenic 45.0%
CCTTACCAAAGGAAAGGCTA+TGG + chr3_1:6016146-6016165 Msa0346090:CDS 45.0%
TAGCAGTCCAAGGTCTGAAA+GGG - chr3_1:6016333-6016352 None:intergenic 45.0%
TTAGCAGTCCAAGGTCTGAA+AGG - chr3_1:6016334-6016353 None:intergenic 45.0%
CTACAGAGGATATTGGACCA+GGG + chr3_1:6016355-6016374 Msa0346090:CDS 45.0%
! AGGACAGCATGTCATTTGTG+CGG + chr3_1:6016773-6016792 Msa0346090:CDS 45.0%
TTTGGATCGCCATCTCAAAG+CGG + chr3_1:6016806-6016825 Msa0346090:CDS 45.0%
ACTTCAGCATTTAACTGCCG+AGG + chr3_1:6018361-6018380 Msa0346090:intron 45.0%
CTTCAGCATTTAACTGCCGA+GGG + chr3_1:6018362-6018381 Msa0346090:intron 45.0%
TTCAGCATTTAACTGCCGAG+GGG + chr3_1:6018363-6018382 Msa0346090:intron 45.0%
! GGAAGGGTATAGTCGTCATT+TGG + chr3_1:6018467-6018486 Msa0346090:intron 45.0%
CGGGATATGGTCACTAACTA+GGG - chr3_1:6018512-6018531 None:intergenic 45.0%
TCGGGATATGGTCACTAACT+AGG - chr3_1:6018513-6018532 None:intergenic 45.0%
AATGGAATGGTAGAGGGAGA+CGG - chr3_1:6018542-6018561 None:intergenic 45.0%
CTTGTACTCAACATCTCCGT+CGG + chr3_1:6019602-6019621 Msa0346090:CDS 45.0%
AGAAAATACCTTAGCGGCTC+TGG - chr3_1:6019648-6019667 None:intergenic 45.0%
GGAGAAACTTCAGTGATACC+GGG + chr3_1:6020577-6020596 Msa0346090:CDS 45.0%
! TTCAGTGATACCGGGTGTTT+TGG + chr3_1:6020585-6020604 Msa0346090:CDS 45.0%
TTCAGGTATGATCCTTCCAC+TGG + chr3_1:6020944-6020963 Msa0346090:intron 45.0%
TGTGATCCTAAACAAGTCCC+AGG + chr3_1:6021111-6021130 Msa0346090:intron 45.0%
! CAATTGCCTGGGACTTGTTT+AGG - chr3_1:6021120-6021139 None:intergenic 45.0%
AGACGCTTGAATGAATGCCA+CGG + chr3_1:6021792-6021811 Msa0346090:intron 45.0%
TTATTCAGGGCCAAGCTATG+TGG - chr3_1:6022324-6022343 None:intergenic 45.0%
GTAGAGGACTGTCATAAACC+TGG + chr3_1:6022383-6022402 Msa0346090:intron 45.0%
GGTGCTTATGCTGTGGTAAT+AGG - chr3_1:6023798-6023817 None:intergenic 45.0%
ACAATCAAAGGGTCCTAAGG+GGG - chr3_1:6023830-6023849 None:intergenic 45.0%
! TGGTGGCGTTTGATCATTTC+AGG - chr3_1:6023866-6023885 None:intergenic 45.0%
ATTATATATGTAGCCGGGGG+GGG + chr3_1:6024190-6024209 Msa0346090:intron 45.0%
!!! TTTAGTTTTGAAACCCCCCC+CGG - chr3_1:6024206-6024225 None:intergenic 45.0%
!! TCGGTTTCTTTTTAAGGGGG+GGG - chr3_1:6024357-6024376 None:intergenic 45.0%
AGGATCAACAGAGGATATGG+CGG - chr3_1:6024463-6024482 None:intergenic 45.0%
GTTGGATTCAAAGGGTGATC+TGG - chr3_1:6024650-6024669 None:intergenic 45.0%
AAAATGAGAACCTGGTGTGG+AGG - chr3_1:6024721-6024740 None:intergenic 45.0%
TGTCAGACACACATAGTCCA+AGG + chr3_1:6024876-6024895 Msa0346090:intron 45.0%
CTTGTACTCAACATCTCCGT+TGG + chr3_1:6019602-6019621 Msa0346090:CDS 45.0%
ATGGTTCTTCACCACCTTAG+CGG + chr3_1:6025122-6025141 Msa0346090:CDS 45.0%
CAAACCCCTGTTCTCTCTAA+AGG + chr3_1:6025146-6025165 Msa0346090:CDS 45.0%
AGTCTCTACAGTTGTGTGCA+AGG + chr3_1:6025304-6025323 Msa0346090:intron 45.0%
! ACAATTTTACCGTTGCGCCA+AGG - chr3_1:6025399-6025418 None:intergenic 45.0%
TGTACAGGTCACCAAAATGG+TGG + chr3_1:6025451-6025470 Msa0346090:intron 45.0%
GTACAGGTCACCAAAATGGT+GGG + chr3_1:6025452-6025471 Msa0346090:intron 45.0%
TTTCCCAGACCTTGCATATG+CGG + chr3_1:6025479-6025498 Msa0346090:intron 45.0%
CTGGTGATATCAGTTTGTGG+TGG + chr3_1:6026126-6026145 Msa0346090:intron 45.0%
GTGATATCAGTTTGTGGTGG+CGG + chr3_1:6026129-6026148 Msa0346090:intron 45.0%
!! TGACATCACACGGTGTTATG+TGG + chr3_1:6026172-6026191 Msa0346090:intron 45.0%
GTACTTCCGAATTCCGATTG+TGG - chr3_1:6026219-6026238 None:intergenic 45.0%
AATCCAGCATCGTGTCACAA+AGG + chr3_1:6026665-6026684 Msa0346090:CDS 45.0%
CAAAGGATGATGCCATGAAG+TGG + chr3_1:6026682-6026701 Msa0346090:CDS 45.0%
TGGCTACGACTAAATGAGCT+CGG - chr3_1:6026745-6026764 None:intergenic 45.0%
!!! AAATATATTTTTTTTTAACT+GGG - chr3_1:6017321-6017340 None:intergenic 5.0%
!!! TAAATATATTTTTTTTTAAC+TGG - chr3_1:6017322-6017341 None:intergenic 5.0%
!!! ATATATTTTTTTTATAGTTT+AGG + chr3_1:6019303-6019322 Msa0346090:intron 5.0%
!!! TATATTTTTTTTATAGTTTA+GGG + chr3_1:6019304-6019323 Msa0346090:intron 5.0%
!! ATAAAAATTAAATAATAGAA+AGG - chr3_1:6019826-6019845 None:intergenic 5.0%
!!! TTTATTATATTTTTTTTTTC+TGG + chr3_1:6019917-6019936 Msa0346090:intron 5.0%
!! AATTTGATATATATAATAAA+GGG + chr3_1:6025370-6025389 Msa0346090:intron 5.0%
!!! TTTTTTTTTTTTCAAATTAA+AGG - chr3_1:6026415-6026434 None:intergenic 5.0%
TGTGATCTTAAGCATCCCCC+TGG + chr3_1:6014835-6014854 Msa0346090:CDS 50.0%
AGAACACTCAGTTGTCTGGC+AGG + chr3_1:6015441-6015460 Msa0346090:intron 50.0%
GAAAGAGGATGCCACATGGT+TGG + chr3_1:6015675-6015694 Msa0346090:CDS 50.0%
CTTTCCTTTGGTAAGGTGGG+AGG - chr3_1:6016142-6016161 None:intergenic 50.0%
CTCCCACCTTACCAAAGGAA+AGG + chr3_1:6016140-6016159 Msa0346090:CDS 50.0%
AGCAGTCCAAGGTCTGAAAG+GGG - chr3_1:6016332-6016351 None:intergenic 50.0%
CTCTGTAGCTTAGCAGTCCA+AGG - chr3_1:6016343-6016362 None:intergenic 50.0%
CTTGGACTGCTAAGCTACAG+AGG + chr3_1:6016341-6016360 Msa0346090:CDS 50.0%
GCTACAGAGGATATTGGACC+AGG + chr3_1:6016354-6016373 Msa0346090:CDS 50.0%
GAAACGATGGGAATGTCGGT+CGG + chr3_1:6017923-6017942 Msa0346090:intron 50.0%
ACATGACTCCAACGTTCGTC+CGG + chr3_1:6018080-6018099 Msa0346090:intron 50.0%
GAATGGAACCATGGGTATGC+CGG - chr3_1:6018102-6018121 None:intergenic 50.0%
TTTCCTCGGCAGTTAACTGC+AGG + chr3_1:6018326-6018345 Msa0346090:intron 50.0%
TAAACTGGCGAGGTGAAGGA+AGG + chr3_1:6018450-6018469 Msa0346090:intron 50.0%
AAACTGGCGAGGTGAAGGAA+GGG + chr3_1:6018451-6018470 Msa0346090:intron 50.0%
AACCATCATTCAGTCCCGGA+AGG + chr3_1:6019196-6019215 Msa0346090:intron 50.0%
TTCCTTCCGGGACTGAATGA+TGG - chr3_1:6019201-6019220 None:intergenic 50.0%
AACATCTCCGTCGGTGAAAG+CGG + chr3_1:6019611-6019630 Msa0346090:CDS 50.0%
GTGGCCATAGAAGATTGCGA+TGG + chr3_1:6020181-6020200 Msa0346090:intron 50.0%
TTAAGACACCACGGCAGAAC+CGG - chr3_1:6020222-6020241 None:intergenic 50.0%
!!! GAGTTTTTGGCCTTTGCCCA+TGG + chr3_1:6020246-6020265 Msa0346090:intron 50.0%
GATTGCAGAAGACGGACCAT+GGG - chr3_1:6020265-6020284 None:intergenic 50.0%
!! GTGCAACGGATTGCAGAAGA+CGG - chr3_1:6020273-6020292 None:intergenic 50.0%
GCATGCTACGTCACTGTTAG+AGG + chr3_1:6020495-6020514 Msa0346090:CDS 50.0%
! CGACAAGGCAATGCAGCTTT+TGG + chr3_1:6020518-6020537 Msa0346090:CDS 50.0%
!! GCAATGCAGCTTTTGGAGAG+CGG + chr3_1:6020525-6020544 Msa0346090:CDS 50.0%
!! GCTTTTGGAGAGCGGTTTGA+AGG + chr3_1:6020533-6020552 Msa0346090:CDS 50.0%
!!! GATACCGGGTGTTTTGGCTT+CGG + chr3_1:6020591-6020610 Msa0346090:CDS 50.0%
GATACCGAAGCCAAAACACC+CGG - chr3_1:6020598-6020617 None:intergenic 50.0%
!!! GTGTTTTGGCTTCGGTATCC+AGG + chr3_1:6020599-6020618 Msa0346090:CDS 50.0%
CGTCCTTTGTGACACGATGT+TGG - chr3_1:6021057-6021076 None:intergenic 50.0%
CAAAGGACGATGCCATGAAG+TGG + chr3_1:6021068-6021087 Msa0346090:CDS 50.0%
!! AAGCACTGGTGCTTATGCTG+TGG - chr3_1:6023805-6023824 None:intergenic 50.0%
!! CTTTTTAAGGGGGGGGTATG+CGG - chr3_1:6024350-6024369 None:intergenic 50.0%
GCGAGGATCAACAGAGGATA+TGG - chr3_1:6024466-6024485 None:intergenic 50.0%
GTACTCAACATCTCCGTTGG+TGG + chr3_1:6025068-6025087 Msa0346090:CDS 50.0%
GCTAAGGTGGTGAAGAACCA+TGG - chr3_1:6025123-6025142 None:intergenic 50.0%
CTCTACAGTTGTGTGCAAGG+AGG + chr3_1:6025307-6025326 Msa0346090:intron 50.0%
!!! GGGAAAGTGTCCCACCATTT+TGG - chr3_1:6025465-6025484 None:intergenic 50.0%
TTCCCAGACCTTGCATATGC+GGG + chr3_1:6025480-6025499 Msa0346090:intron 50.0%
CAAAAGCTCCCGCATATGCA+AGG - chr3_1:6025491-6025510 None:intergenic 50.0%
! ATGCGGGAGCTTTTGTGAAC+CGG + chr3_1:6025496-6025515 Msa0346090:intron 50.0%
AGAACCATAAAAGGGCAGCC+CGG - chr3_1:6025518-6025537 None:intergenic 50.0%
! GCTTGCTACGTCACTGTTAG+AGG + chr3_1:6025797-6025816 Msa0346090:CDS 50.0%
! CGACAAGGCAATGCAGCTTT+TGG + chr3_1:6020518-6020537 Msa0346090:CDS 50.0%
!! GCAATGCAGCTTTTGGAGAG+CGG + chr3_1:6020525-6020544 Msa0346090:CDS 50.0%
!! GCTTTTGGAGAGCGGTTTGA+AGG + chr3_1:6020533-6020552 Msa0346090:CDS 50.0%
GATGCTGCTGTGACATCACA+CGG + chr3_1:6026162-6026181 Msa0346090:intron 50.0%
TTCCAAGACGTGCCTTGCAA+CGG - chr3_1:6026647-6026666 None:intergenic 50.0%
CATCCTTTGTGACACGATGC+TGG - chr3_1:6026671-6026690 None:intergenic 50.0%
GATGCCATGAAGTGGTTCCA+AGG + chr3_1:6021076-6021095 Msa0346090:CDS 50.0%
AAATGAGCTCGGGCCTGTTT+AGG - chr3_1:6026734-6026753 None:intergenic 50.0%
GGCTACGACTAAATGAGCTC+GGG - chr3_1:6026744-6026763 None:intergenic 50.0%
TTTGGTAAGGTGGGAGGGTG+AGG - chr3_1:6016136-6016155 None:intergenic 55.0%
TCACCCTCCCACCTTACCAA+AGG + chr3_1:6016135-6016154 Msa0346090:CDS 55.0%
AGGTCTGAAAGGGGCCTTTC+AGG - chr3_1:6016323-6016342 None:intergenic 55.0%
GAAAGGCCCCTTTCAGACCT+TGG + chr3_1:6016323-6016342 Msa0346090:CDS 55.0%
ATCTCAAAGCGGCTGGCAGA+GGG + chr3_1:6016817-6016836 Msa0346090:CDS 55.0%
AAGCAGCACCAACATCCGAC+CGG + chr3_1:6017754-6017773 Msa0346090:intron 55.0%
GAATGGAACGATGGGACTGC+CGG - chr3_1:6017776-6017795 None:intergenic 55.0%
TGGGAATGTCGGTCGGATGT+TGG + chr3_1:6017930-6017949 Msa0346090:intron 55.0%
AGACGGCAACACTCGGGATA+TGG - chr3_1:6018525-6018544 None:intergenic 55.0%
TAGAGGGAGACGGCAACACT+CGG - chr3_1:6018532-6018551 None:intergenic 55.0%
GGCGCGAATGGAATGGTAGA+GGG - chr3_1:6018548-6018567 None:intergenic 55.0%
AGAGAACGGCGCGAATGGAA+TGG - chr3_1:6018555-6018574 None:intergenic 55.0%
TCTGAAGAGAACGGCGCGAA+TGG - chr3_1:6018560-6018579 None:intergenic 55.0%
ACGATCTCCGCTTTCACCGA+CGG - chr3_1:6019621-6019640 None:intergenic 55.0%
AGAAGACGGACCATGGGCAA+AGG - chr3_1:6020259-6020278 None:intergenic 55.0%
GGATTGCAGAAGACGGACCA+TGG - chr3_1:6020266-6020285 None:intergenic 55.0%
AGGTACACGGTCCGTTCCTT+TGG + chr3_1:6020450-6020469 Msa0346090:CDS 55.0%
CGTCACTGTTAGAGGCGACA+AGG + chr3_1:6020503-6020522 Msa0346090:CDS 55.0%
GGAGAGCGGTTTGAAGGTCA+AGG + chr3_1:6020539-6020558 Msa0346090:CDS 55.0%
! TTTGTTGTCTTGGAGCGCCC+TGG + chr3_1:6020986-6021005 Msa0346090:CDS 55.0%
GACGTCCCACACGATAACCA+GGG - chr3_1:6021006-6021025 None:intergenic 55.0%
CGTAGGTGCAAGGCAAGAGT+TGG + chr3_1:6021028-6021047 Msa0346090:CDS 55.0%
TTCAACTAGGCAGCACACCG+TGG - chr3_1:6021812-6021831 None:intergenic 55.0%
TGCTGGGGAGTGAGAAAGCT+TGG - chr3_1:6023553-6023572 None:intergenic 55.0%
CACCAGTGCTTATCCCCCTT+AGG + chr3_1:6023814-6023833 Msa0346090:intron 55.0%
GTCCTAAGGGGGATAAGCAC+TGG - chr3_1:6023819-6023838 None:intergenic 55.0%
!! GGGTATGCGGTTCGGTTCAT+TGG - chr3_1:6024337-6024356 None:intergenic 55.0%
CAGGTCGACAACGGGTACAA+CGG - chr3_1:6024440-6024459 None:intergenic 55.0%
ATATGGCGGCAGGTCGACAA+CGG - chr3_1:6024449-6024468 None:intergenic 55.0%
TCAACAGAGGATATGGCGGC+AGG - chr3_1:6024459-6024478 None:intergenic 55.0%
TGATGCGCGAGGATCAACAG+AGG - chr3_1:6024472-6024491 None:intergenic 55.0%
! AGCTCTGACAATGATGCGCG+AGG - chr3_1:6024483-6024502 None:intergenic 55.0%
TGATATCGCTCCTCCACACC+AGG + chr3_1:6024708-6024727 Msa0346090:CDS 55.0%
GTGAAGAACCATGGCAGCTC+TGG - chr3_1:6025114-6025133 None:intergenic 55.0%
GAACAGGGGTTTGACCGCTA+AGG - chr3_1:6025139-6025158 None:intergenic 55.0%
AAAGGGGATCCTTGGCGCAA+CGG + chr3_1:6025387-6025406 Msa0346090:intron 55.0%
CTCCCGCATATGCAAGGTCT+GGG - chr3_1:6025485-6025504 None:intergenic 55.0%
! TGCGGGAGCTTTTGTGAACC+GGG + chr3_1:6025497-6025516 Msa0346090:intron 55.0%
! TGAACCGGGCTGCCCTTTTA+TGG + chr3_1:6025511-6025530 Msa0346090:intron 55.0%
AAGCACACCGTCCGTTCCTT+TGG + chr3_1:6025752-6025771 Msa0346090:CDS 55.0%
CGTCACTGTTAGAGGCGACA+AGG + chr3_1:6020503-6020522 Msa0346090:CDS 55.0%
GGAGAGCGGTTTGAAGGTCA+AGG + chr3_1:6020539-6020558 Msa0346090:CDS 55.0%
TCACAGCAGCATCTCAGCTG+CGG - chr3_1:6026155-6026174 None:intergenic 55.0%
! TTTGTTGTCTTGGAGCGCCC+TGG + chr3_1:6020986-6021005 Msa0346090:CDS 55.0%
GACGTCCCACACGATTACCA+GGG - chr3_1:6026620-6026639 None:intergenic 55.0%
TCCAAGACGTGCCTTGCAAC+GGG - chr3_1:6026646-6026665 None:intergenic 55.0%
GATCGCCATCTCAAAGCGGC+TGG + chr3_1:6016810-6016829 Msa0346090:CDS 60.0%
!! CTCTGCCAGCCGCTTTGAGA+TGG - chr3_1:6016818-6016837 None:intergenic 60.0%
CATCTCAAAGCGGCTGGCAG+AGG + chr3_1:6016816-6016835 Msa0346090:CDS 60.0%
TCTCAAAGCGGCTGGCAGAG+GGG + chr3_1:6016818-6016837 Msa0346090:CDS 60.0%
TGGGTATGCCGGACGAACGT+TGG - chr3_1:6018091-6018110 None:intergenic 60.0%
ACGTTCGTCCGGCATACCCA+TGG + chr3_1:6018091-6018110 Msa0346090:intron 60.0%
AGAGGGAGACGGCAACACTC+GGG - chr3_1:6018531-6018550 None:intergenic 60.0%
CGGCGCGAATGGAATGGTAG+AGG - chr3_1:6018549-6018568 None:intergenic 60.0%
TCGTCTCACCAGAGCCGCTA+AGG + chr3_1:6019637-6019656 Msa0346090:CDS 60.0%
!! TATTGCCACCGGTTCTGCCG+TGG + chr3_1:6020211-6020230 Msa0346090:intron 60.0%
GAGCGCCCTGGTTATCGTGT+GGG + chr3_1:6020998-6021017 Msa0346090:CDS 60.0%
CGACGTCCCACACGATAACC+AGG - chr3_1:6021007-6021026 None:intergenic 60.0%
ATCGTGTGGGACGTCGTCGT+AGG + chr3_1:6021011-6021030 Msa0346090:CDS 60.0%
! TAAGGGGGGGGTATGCGGTT+CGG - chr3_1:6024345-6024364 None:intergenic 60.0%
TATGGCGGCAGGTCGACAAC+GGG - chr3_1:6024448-6024467 None:intergenic 60.0%
TCGTCTCACCAGAGCTGCCA+TGG + chr3_1:6025103-6025122 Msa0346090:CDS 60.0%
CAGGGGTTTGACCGCTAAGG+TGG - chr3_1:6025136-6025155 None:intergenic 60.0%
GCTCCCGCATATGCAAGGTC+TGG - chr3_1:6025486-6025505 None:intergenic 60.0%
GAGCGCCCTGGTAATCGTGT+GGG + chr3_1:6026612-6026631 Msa0346090:CDS 60.0%
CGACGTCCCACACGATTACC+AGG - chr3_1:6026621-6026640 None:intergenic 60.0%
CCAAGACGTGCCTTGCAACG+GGG - chr3_1:6026645-6026664 None:intergenic 60.0%
CTCAAAGCGGCTGGCAGAGG+GGG + chr3_1:6016819-6016838 Msa0346090:CDS 65.0%
TGGGACTGCCGGTCGGATGT+TGG - chr3_1:6017765-6017784 None:intergenic 65.0%
GGAACGATGGGACTGCCGGT+CGG - chr3_1:6017772-6017791 None:intergenic 65.0%
CGGCCTGCAGTTAACTGCCG+AGG - chr3_1:6018332-6018351 None:intergenic 65.0%
AGACACCACGGCAGAACCGG+TGG - chr3_1:6020219-6020238 None:intergenic 65.0%
! GGAGCGCCCTGGTTATCGTG+TGG + chr3_1:6020997-6021016 Msa0346090:CDS 65.0%
GGGACGTCGTCGTAGGTGCA+AGG + chr3_1:6021018-6021037 Msa0346090:CDS 65.0%
GACGGCGAGACACGACGGAA+CGG - chr3_1:6024506-6024525 None:intergenic 65.0%
! GGAGCGCCCTGGTAATCGTG+TGG + chr3_1:6026611-6026630 Msa0346090:CDS 65.0%
CCCCGTTGCAAGGCACGTCT+TGG + chr3_1:6026642-6026661 Msa0346090:CDS 65.0%
GGAGCGACGGCGAGACACGA+CGG - chr3_1:6024511-6024530 None:intergenic 70.0%
GGGACGTCGTCCCCGTTGCA+AGG + chr3_1:6026632-6026651 Msa0346090:CDS 70.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 6014823 6026986 6014823 ID=Msa0346090;Name=Msa0346090
chr3_1 mRNA 6014823 6026986 6014823 ID=Msa0346090-mRNA-1;Parent=Msa0346090;Name=Msa0346090-mRNA-1;_AED=0.19;_eAED=0.19;_QI=0|0.83|0.69|1|1|1|13|231|635
chr3_1 exon 6014823 6014897 6014823 ID=Msa0346090-mRNA-1:exon:1724;Parent=Msa0346090-mRNA-1
chr3_1 exon 6015549 6015710 6015549 ID=Msa0346090-mRNA-1:exon:1725;Parent=Msa0346090-mRNA-1
chr3_1 exon 6016095 6016188 6016095 ID=Msa0346090-mRNA-1:exon:1726;Parent=Msa0346090-mRNA-1
chr3_1 exon 6016282 6016424 6016282 ID=Msa0346090-mRNA-1:exon:1727;Parent=Msa0346090-mRNA-1
chr3_1 exon 6016693 6016854 6016693 ID=Msa0346090-mRNA-1:exon:1728;Parent=Msa0346090-mRNA-1
chr3_1 exon 6019551 6019658 6019551 ID=Msa0346090-mRNA-1:exon:1729;Parent=Msa0346090-mRNA-1
chr3_1 exon 6019744 6019786 6019744 ID=Msa0346090-mRNA-1:exon:1730;Parent=Msa0346090-mRNA-1
chr3_1 exon 6020448 6020643 6020448 ID=Msa0346090-mRNA-1:exon:1731;Parent=Msa0346090-mRNA-1
chr3_1 exon 6020949 6021096 6020949 ID=Msa0346090-mRNA-1:exon:1732;Parent=Msa0346090-mRNA-1
chr3_1 exon 6024499 6024729 6024499 ID=Msa0346090-mRNA-1:exon:1733;Parent=Msa0346090-mRNA-1
chr3_1 exon 6025011 6025167 6025011 ID=Msa0346090-mRNA-1:exon:1734;Parent=Msa0346090-mRNA-1
chr3_1 exon 6025750 6025945 6025750 ID=Msa0346090-mRNA-1:exon:1735;Parent=Msa0346090-mRNA-1
chr3_1 exon 6026563 6026986 6026563 ID=Msa0346090-mRNA-1:exon:1736;Parent=Msa0346090-mRNA-1
chr3_1 CDS 6014823 6014897 6014823 ID=Msa0346090-mRNA-1:cds;Parent=Msa0346090-mRNA-1
chr3_1 CDS 6015549 6015710 6015549 ID=Msa0346090-mRNA-1:cds;Parent=Msa0346090-mRNA-1
chr3_1 CDS 6016095 6016188 6016095 ID=Msa0346090-mRNA-1:cds;Parent=Msa0346090-mRNA-1
chr3_1 CDS 6016282 6016424 6016282 ID=Msa0346090-mRNA-1:cds;Parent=Msa0346090-mRNA-1
chr3_1 CDS 6016693 6016854 6016693 ID=Msa0346090-mRNA-1:cds;Parent=Msa0346090-mRNA-1
chr3_1 CDS 6019551 6019658 6019551 ID=Msa0346090-mRNA-1:cds;Parent=Msa0346090-mRNA-1
chr3_1 CDS 6019744 6019786 6019744 ID=Msa0346090-mRNA-1:cds;Parent=Msa0346090-mRNA-1
chr3_1 CDS 6020448 6020643 6020448 ID=Msa0346090-mRNA-1:cds;Parent=Msa0346090-mRNA-1
chr3_1 CDS 6020949 6021096 6020949 ID=Msa0346090-mRNA-1:cds;Parent=Msa0346090-mRNA-1
chr3_1 CDS 6024499 6024729 6024499 ID=Msa0346090-mRNA-1:cds;Parent=Msa0346090-mRNA-1
chr3_1 CDS 6025011 6025167 6025011 ID=Msa0346090-mRNA-1:cds;Parent=Msa0346090-mRNA-1
chr3_1 CDS 6025750 6025945 6025750 ID=Msa0346090-mRNA-1:cds;Parent=Msa0346090-mRNA-1
chr3_1 CDS 6026563 6026755 6026563 ID=Msa0346090-mRNA-1:cds;Parent=Msa0346090-mRNA-1
chr3_1 three_prime_UTR 6026756 6026986 6026756 ID=Msa0346090-mRNA-1:three_prime_utr;Parent=Msa0346090-mRNA-1
Gene Sequence

>Msa0346090

ATGCAGAAAAAATGTGATCTTAAGCATCCCCCTGGTGATGAGATATACAGAAGTGGTACATTGTCAATGTTTGAGGTTGATGGCAAGAAGAACAAGGTTTATGGGCAGAATCTTTGTTATTTGGCCAAGTTATTTCTTGATCACAAGACCCTCTACTATGATGTTGACCTGTTTCTGTTCTATGTTTTGTGTGAATGTGATGAAAGAGGATGCCACATGGTTGGATATTTTTCGAAGGAAAAACATTCTGAGGAATCCTACAATTTGGCATGTATCCTCACCCTCCCACCTTACCAAAGGAAAGGCTATGGAAAATTTCTAATTGCTTTTTCATATGAACTTTCAAAGAAGGAGGGAAAAGTTGGTACACCTGAAAGGCCCCTTTCAGACCTTGGACTGCTAAGCTACAGAGGATATTGGACCAGGGTTCTTTTAGACATTCTGAAAAAGCATAAGGGAAACATTTCTATCAAGGAGCTGAGTGATATGACTGCCATTAAAGCTGAAGATATATTGACAACTCTTCAGAGCCTAGAACTGATTCAATACAGGAAAGGACAGCATGTCATTTGTGCGGATCCAAAAGTTTTGGATCGCCATCTCAAAGCGGCTGGCAGAGGGGGTCTTGACGTTGATGCGTCAGAGAAGAAACTGTCTAATCCAATGAGGGAAATCAAAGTGCAAAAACTTGTACTCAACATCTCCGTCGGTGAAAGCGGAGATCGTCTCACCAGAGCCGCTAAGGTTCTTGAACAGCTAAGTGGACAAACACCTGTTTTCTCCAAAGCTAGGTACACGGTCCGTTCCTTTGGTATTAGAAGGAATGAAAAGATTGCATGCTACGTCACTGTTAGAGGCGACAAGGCAATGCAGCTTTTGGAGAGCGGTTTGAAGGTCAAGGAATATGAGCTGTTGAGGAGAAACTTCAGTGATACCGGGTGTTTTGGCTTCGGTATCCAGGAACATATTGATTTGGGAATCAAGTATGATCCTTCCACTGGTATTTATGGTATGGATTTCTTTGTTGTCTTGGAGCGCCCTGGTTATCGTGTGGGACGTCGTCGTAGGTGCAAGGCAAGAGTTGGAATCCAACATCGTGTCACAAAGGACGATGCCATGAAGTGGTTCCAAAGCTCCGTTCCGTCGTGTCTCGCCGTCGCTCCGAATAACAAAAATCCAAACATGTCTGTTCTTGTTCGAACAATTCAAAGAGCTCATAATGTTCTCTCTCAAACATTAGGTTATGGTAACAGCAGAACTTACATTGCTGAATCACTTACCAGATCACCCTTTGAATCCAACATTTTGCGAATTATCCGAAACGAAATGGAGTTTCTAGCTGATATCGCTCCTCCACACCAGGCTTACGAGAAGAAACTGTTGAATAATCCATTGAGGGATATCAAAGTGCAAAAGCTTGTACTCAACATCTCCGTTGGTGGTGAAAGTAGACATCGTCTCACCAGAGCTGCCATGGTTCTTCACCACCTTAGCGGTCAAACCCCTGTTCTCTCTAAAGCTAAGCACACCGTCCGTTCCTTTGGTAATAGAAGGAATGAAAAGATTGCTTGCTACGTCACTGTTAGAGGCGACAAGGCAATGCAGCTTTTGGAGAGCGGTTTGAAGGTCAAGGAATATAAACTGTTGAGGAGAAACTTCAGTGATAATGGTTCTTTTGGCTTCGGTATTCAGGATCATATTGAACTGGGATTCAAGTATGATCCTTCTATTGGTATTTATGGAATGAATTACTTTGTTGTCTTGGAGCGCCCTGGTAATCGTGTGGGACGTCGTCCCCGTTGCAAGGCACGTCTTGGAATCCAGCATCGTGTCACAAAGGATGATGCCATGAAGTGGTTCCAAGGTAAATATGAAGGTGTGATCCTAAACAGGCCCGAGCTCATTTAG
Protein sequence

>Msa0346090

MQKKCDLKHPPGDEIYRSGTLSMFEVDGKKNKVYGQNLCYLAKLFLDHKTLYYDVDLFLFYVLCECDERGCHMVGYFSKEKHSEESYNLACILTLPPYQRKGYGKFLIAFSYELSKKEGKVGTPERPLSDLGLLSYRGYWTRVLLDILKKHKGNISIKELSDMTAIKAEDILTTLQSLELIQYRKGQHVICADPKVLDRHLKAAGRGGLDVDASEKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLERPGYRVGRRRRCKARVGIQHRVTKDDAMKWFQSSVPSCLAVAPNNKNPNMSVLVRTIQRAHNVLSQTLGYGNSRTYIAESLTRSPFESNILRIIRNEMEFLADIAPPHQAYEKKLLNNPLRDIKVQKLVLNISVGGESRHRLTRAAMVLHHLSGQTPVLSKAKHTVRSFGNRRNEKIACYVTVRGDKAMQLLESGLKVKEYKLLRRNFSDNGSFGFGIQDHIELGFKYDPSIGIYGMNYFVVLERPGNRVGRRPRCKARLGIQHRVTKDDAMKWFQGKYEGVILNRPELI*