Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0597240 | XP_013457002.1 | 98.790 | 248 | 3 | 0 | 2 | 249 | 1 | 248 | 6.42e-177 | 496 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0597240 | sp|Q9M3V8|RS6_ASPOF | 91.736 | 242 | 20 | 0 | 2 | 243 | 1 | 242 | 7.96e-164 | 456 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001760 | Msa0597240 | 0.810922 | 9.060643e-51 | -8.615850e-47 |
| Msa0003330 | Msa0597240 | 0.857086 | 2.074296e-62 | -8.615850e-47 |
| Msa0021290 | Msa0597240 | 0.801814 | 7.537721e-49 | -8.615850e-47 |
| Msa0027590 | Msa0597240 | 0.913629 | 4.930102e-84 | -8.615850e-47 |
| Msa0040220 | Msa0597240 | 0.875450 | 3.052828e-68 | -8.615850e-47 |
| Msa0042510 | Msa0597240 | 0.843450 | 1.391316e-58 | -8.615850e-47 |
| Msa0072570 | Msa0597240 | 0.860267 | 2.326764e-63 | -8.615850e-47 |
| Msa0075350 | Msa0597240 | 0.871188 | 8.267401e-67 | -8.615850e-47 |
| Msa0079560 | Msa0597240 | 0.829686 | 4.479867e-55 | -8.615850e-47 |
| Msa0087910 | Msa0597240 | 0.867403 | 1.404166e-65 | -8.615850e-47 |
| Msa0094210 | Msa0597240 | 0.810343 | 1.208129e-50 | -8.615850e-47 |
| Msa0116600 | Msa0597240 | 0.839543 | 1.488359e-57 | -8.615850e-47 |
| Msa0116690 | Msa0597240 | 0.825877 | 3.688143e-54 | -8.615850e-47 |
| Msa0127230 | Msa0597240 | 0.816690 | 4.856382e-52 | -8.615850e-47 |
| Msa0128330 | Msa0597240 | 0.861927 | 7.271713e-64 | -8.615850e-47 |
| Msa0132460 | Msa0597240 | 0.859676 | 3.506912e-63 | -8.615850e-47 |
| Msa0134580 | Msa0597240 | 0.862601 | 4.515642e-64 | -8.615850e-47 |
| Msa0167860 | Msa0597240 | 0.883864 | 3.126078e-71 | -8.615850e-47 |
| Msa0168320 | Msa0597240 | 0.851811 | 6.958479e-61 | -8.615850e-47 |
| Msa0174580 | Msa0597240 | 0.851014 | 1.169361e-60 | -8.615850e-47 |
| Msa0182050 | Msa0597240 | 0.866179 | 3.445056e-65 | -8.615850e-47 |
| Msa0182100 | Msa0597240 | 0.851329 | 9.529549e-61 | -8.615850e-47 |
| Msa0188740 | Msa0597240 | 0.827966 | 1.168373e-54 | -8.615850e-47 |
| Msa0191450 | Msa0597240 | 0.849843 | 2.493310e-60 | -8.615850e-47 |
| Msa0191550 | Msa0597240 | 0.848159 | 7.321982e-60 | -8.615850e-47 |
| Msa0192300 | Msa0597240 | 0.879901 | 8.534897e-70 | -8.615850e-47 |
| Msa0192750 | Msa0597240 | 0.800335 | 1.512871e-48 | -8.615850e-47 |
| Msa0194940 | Msa0597240 | 0.842643 | 2.280768e-58 | -8.615850e-47 |
| Msa0195030 | Msa0597240 | 0.842014 | 3.349205e-58 | -8.615850e-47 |
| Msa0219090 | Msa0597240 | 0.825674 | 4.122233e-54 | -8.615850e-47 |
| Msa0223440 | Msa0597240 | 0.805585 | 1.243285e-49 | -8.615850e-47 |
| Msa0233550 | Msa0597240 | 0.848087 | 7.663870e-60 | -8.615850e-47 |
| Msa0235050 | Msa0597240 | 0.825653 | 4.167836e-54 | -8.615850e-47 |
| Msa0237180 | Msa0597240 | 0.828039 | 1.122015e-54 | -8.615850e-47 |
| Msa0369410 | Msa0597240 | 0.883025 | 6.357269e-71 | -8.615850e-47 |
| Msa0371490 | Msa0597240 | 0.828438 | 8.989890e-55 | -8.615850e-47 |
| Msa0376850 | Msa0597240 | 0.814343 | 1.616582e-51 | -8.615850e-47 |
| Msa0377370 | Msa0597240 | 0.839855 | 1.234348e-57 | -8.615850e-47 |
| Msa0377520 | Msa0597240 | 0.853426 | 2.409153e-61 | -8.615850e-47 |
| Msa0382670 | Msa0597240 | 0.849210 | 3.742049e-60 | -8.615850e-47 |
| Msa0387290 | Msa0597240 | 0.814011 | 1.914298e-51 | -8.615850e-47 |
| Msa0388520 | Msa0597240 | 0.801094 | 1.058885e-48 | -8.615850e-47 |
| Msa0416470 | Msa0597240 | 0.812712 | 3.692330e-51 | -8.615850e-47 |
| Msa0426090 | Msa0597240 | 0.899401 | 2.055961e-77 | -8.615850e-47 |
| Msa0426250 | Msa0597240 | 0.882347 | 1.124689e-70 | -8.615850e-47 |
| Msa0450150 | Msa0597240 | 0.808074 | 3.703039e-50 | -8.615850e-47 |
| Msa0463520 | Msa0597240 | 0.825988 | 3.470526e-54 | -8.615850e-47 |
| Msa0472480 | Msa0597240 | 0.900974 | 4.278809e-78 | -8.615850e-47 |
| Msa0475810 | Msa0597240 | 0.855995 | 4.338317e-62 | -8.615850e-47 |
| Msa0481520 | Msa0597240 | 0.863465 | 2.442231e-64 | -8.615850e-47 |
| Msa0482560 | Msa0597240 | 0.856524 | 3.035551e-62 | -8.615850e-47 |
| Msa0239420 | Msa0597240 | 0.840271 | 9.616669e-58 | -8.615850e-47 |
| Msa0270160 | Msa0597240 | 0.826742 | 2.296212e-54 | -8.615850e-47 |
| Msa0274940 | Msa0597240 | 0.832810 | 7.644994e-56 | -8.615850e-47 |
| Msa0277600 | Msa0597240 | 0.849263 | 3.617324e-60 | -8.615850e-47 |
| Msa0281330 | Msa0597240 | 0.817427 | 3.317134e-52 | -8.615850e-47 |
| Msa0281370 | Msa0597240 | 0.849973 | 2.291626e-60 | -8.615850e-47 |
| Msa0301250 | Msa0597240 | 0.880808 | 4.046986e-70 | -8.615850e-47 |
| Msa0312210 | Msa0597240 | 0.806797 | 6.909418e-50 | -8.615850e-47 |
| Msa0313060 | Msa0597240 | 0.881425 | 2.427021e-70 | -8.615850e-47 |
| Msa0315430 | Msa0597240 | 0.893081 | 8.759207e-75 | -8.615850e-47 |
| Msa0315660 | Msa0597240 | 0.825831 | 3.782533e-54 | -8.615850e-47 |
| Msa0323070 | Msa0597240 | 0.816788 | 4.616179e-52 | -8.615850e-47 |
| Msa0340560 | Msa0597240 | 0.846609 | 1.950517e-59 | -8.615850e-47 |
| Msa0346090 | Msa0597240 | 0.864869 | 8.910703e-65 | -8.615850e-47 |
| Msa0485220 | Msa0597240 | 0.843214 | 1.607943e-58 | -8.615850e-47 |
| Msa0511760 | Msa0597240 | 0.835296 | 1.822737e-56 | -8.615850e-47 |
| Msa0516830 | Msa0597240 | 0.814597 | 1.421037e-51 | -8.615850e-47 |
| Msa0517480 | Msa0597240 | 0.834157 | 3.524934e-56 | -8.615850e-47 |
| Msa0529900 | Msa0597240 | 0.806634 | 7.477526e-50 | -8.615850e-47 |
| Msa0547920 | Msa0597240 | 0.894755 | 1.829925e-75 | -8.615850e-47 |
| Msa0573550 | Msa0597240 | 0.916157 | 2.496849e-85 | -8.615850e-47 |
| Msa0574780 | Msa0597240 | 0.846908 | 1.616018e-59 | -8.615850e-47 |
| Msa0579830 | Msa0597240 | 0.813851 | 2.076217e-51 | -8.615850e-47 |
| Msa0582070 | Msa0597240 | 0.832583 | 8.702496e-56 | -8.615850e-47 |
| Msa0597240 | Msa0602900 | 0.891701 | 3.124804e-74 | -8.615850e-47 |
| Msa0597240 | Msa0605890 | 0.876957 | 9.231645e-69 | -8.615850e-47 |
| Msa0597240 | Msa0609120 | 0.810180 | 1.310465e-50 | -8.615850e-47 |
| Msa0597240 | Msa0619230 | 0.897818 | 9.722654e-77 | -8.615850e-47 |
| Msa0597240 | Msa0621190 | 0.836380 | 9.680104e-57 | -8.615850e-47 |
| Msa0597240 | Msa0643960 | 0.887767 | 1.068076e-72 | -8.615850e-47 |
| Msa0597240 | Msa0648670 | 0.817333 | 3.481334e-52 | -8.615850e-47 |
| Msa0597240 | Msa0649890 | 0.817483 | 3.221049e-52 | -8.615850e-47 |
| Msa0597240 | Msa0653060 | 0.832001 | 1.212485e-55 | -8.615850e-47 |
| Msa0597240 | Msa0656450 | 0.808094 | 3.666636e-50 | -8.615850e-47 |
| Msa0597240 | Msa0686550 | 0.801870 | 7.342777e-49 | -8.615850e-47 |
| Msa0597240 | Msa0691760 | 0.814547 | 1.457056e-51 | -8.615850e-47 |
| Msa0597240 | Msa0694400 | 0.900284 | 8.547027e-78 | -8.615850e-47 |
| Msa0597240 | Msa0700370 | 0.801390 | 9.210405e-49 | -8.615850e-47 |
| Msa0597240 | Msa0704860 | 0.826550 | 2.550879e-54 | -8.615850e-47 |
| Msa0597240 | Msa0705800 | 0.801282 | 9.692964e-49 | -8.615850e-47 |
| Msa0597240 | Msa0708630 | 0.859972 | 2.855950e-63 | -8.615850e-47 |
| Msa0597240 | Msa0741510 | 0.805942 | 1.046415e-49 | -8.615850e-47 |
| Msa0597240 | Msa0748350 | 0.809531 | 1.807088e-50 | -8.615850e-47 |
| Msa0597240 | Msa0758420 | 0.830296 | 3.181526e-55 | -8.615850e-47 |
| Msa0597240 | Msa0788380 | 0.881160 | 3.022682e-70 | -8.615850e-47 |
| Msa0597240 | Msa0790450 | 0.840923 | 6.489653e-58 | -8.615850e-47 |
| Msa0597240 | Msa0834220 | 0.800889 | 1.166275e-48 | -8.615850e-47 |
| Msa0597240 | Msa0838070 | 0.873382 | 1.535836e-67 | -8.615850e-47 |
| Msa0597240 | Msa0880050 | 0.821954 | 3.067028e-53 | -8.615850e-47 |
| Msa0597240 | Msa0929680 | 0.802279 | 6.048419e-49 | -8.615850e-47 |
| Msa0597240 | Msa0929700 | 0.917837 | 3.262166e-86 | -8.615850e-47 |
| Msa0597240 | Msa0930360 | 0.830850 | 2.328107e-55 | -8.615850e-47 |
| Msa0597240 | Msa0930790 | 0.827186 | 1.797688e-54 | -8.615850e-47 |
| Msa0597240 | Msa0930890 | 0.837089 | 6.383700e-57 | -8.615850e-47 |
| Msa0597240 | Msa0978470 | 0.800329 | 1.516448e-48 | -8.615850e-47 |
| Msa0597240 | Msa1025220 | 0.800904 | 1.158013e-48 | -8.615850e-47 |
| Msa0597240 | Msa1037290 | 0.809626 | 1.724604e-50 | -8.615850e-47 |
| Msa0597240 | Msa1040160 | 0.869519 | 2.913918e-66 | -8.615850e-47 |
| Msa0597240 | Msa1041680 | 0.858836 | 6.264982e-63 | -8.615850e-47 |
| Msa0597240 | Msa1042100 | 0.850384 | 1.758278e-60 | -8.615850e-47 |
| Msa0597240 | Msa1054280 | 0.849088 | 4.046584e-60 | -8.615850e-47 |
| Msa0597240 | Msa1082050 | 0.809602 | 1.745141e-50 | -8.615850e-47 |
| Msa0597240 | Msa1082170 | 0.845696 | 3.456275e-59 | -8.615850e-47 |
| Msa0597240 | Msa1083370 | 0.868639 | 5.624334e-66 | -8.615850e-47 |
| Msa0597240 | Msa1116940 | 0.847769 | 9.376665e-60 | -8.615850e-47 |
| Msa0597240 | Msa1124980 | 0.818321 | 2.083682e-52 | -8.615850e-47 |
| Msa0597240 | Msa1126520 | 0.802301 | 5.988057e-49 | -8.615850e-47 |
| Msa0597240 | Msa1126690 | 0.849645 | 2.831467e-60 | -8.615850e-47 |
| Msa0597240 | Msa1164150 | 0.830429 | 2.951245e-55 | -8.615850e-47 |
| Msa0597240 | Msa1166570 | 0.862623 | 4.443638e-64 | -8.615850e-47 |
| Msa0597240 | Msa1167360 | 0.822605 | 2.165698e-53 | -8.615850e-47 |
| Msa0597240 | Msa1180000 | 0.903385 | 3.665752e-79 | -8.615850e-47 |
| Msa0597240 | Msa1186030 | 0.874495 | 6.458728e-68 | -8.615850e-47 |
| Msa0597240 | Msa1206240 | 0.825107 | 5.614120e-54 | -8.615850e-47 |
| Msa0597240 | Msa1213850 | 0.838237 | 3.240840e-57 | -8.615850e-47 |
| Msa0597240 | Msa1219760 | 0.815704 | 8.067370e-52 | -8.615850e-47 |
| Msa0597240 | Msa1235950 | 0.867053 | 1.816744e-65 | -8.615850e-47 |
| Msa0597240 | Msa1235980 | 0.875378 | 3.230488e-68 | -8.615850e-47 |
| Msa0597240 | Msa1237040 | 0.893631 | 5.251135e-75 | -8.615850e-47 |
| Msa0597240 | Msa1240270 | 0.871873 | 4.903766e-67 | -8.615850e-47 |
| Msa0597240 | Msa1255850 | 0.801363 | 9.328456e-49 | -8.615850e-47 |
| Msa0597240 | Msa1258540 | 0.869705 | 2.533621e-66 | -8.615850e-47 |
| Msa0597240 | Msa1270640 | 0.893916 | 4.023833e-75 | -8.615850e-47 |
| Msa0597240 | Msa1270710 | 0.895912 | 6.101675e-76 | -8.615850e-47 |
| Msa0597240 | Msa1278130 | 0.862446 | 5.039510e-64 | -8.615850e-47 |
| Msa0597240 | Msa1284060 | 0.828802 | 7.341656e-55 | -8.615850e-47 |
| Msa0597240 | Msa1284800 | 0.816859 | 4.451003e-52 | -8.615850e-47 |
| Msa0597240 | Msa1311400 | 0.805738 | 1.154994e-49 | -8.615850e-47 |
| Msa0597240 | Msa1316100 | 0.845676 | 3.500060e-59 | -8.615850e-47 |
| Msa0597240 | Msa1317390 | 0.866639 | 2.461969e-65 | -8.615850e-47 |
| Msa0597240 | Msa1333370 | 0.817078 | 3.974154e-52 | -8.615850e-47 |
| Msa0597240 | Msa1341780 | 0.808680 | 2.750113e-50 | -8.615850e-47 |
| Msa0597240 | Msa1351020 | 0.835652 | 1.481178e-56 | -8.615850e-47 |
| Msa0597240 | Msa1351910 | 0.838039 | 3.643849e-57 | -8.615850e-47 |
| Msa0597240 | Msa1358710 | 0.822652 | 2.112316e-53 | -8.615850e-47 |
| Msa0597240 | Msa1363910 | 0.820447 | 6.827289e-53 | -8.615850e-47 |
| Msa0597240 | Msa1368920 | 0.812507 | 4.094503e-51 | -8.615850e-47 |
| Msa0597240 | Msa1385480 | 0.876592 | 1.235224e-68 | -8.615850e-47 |
| Msa0597240 | Msa1387750 | 0.816590 | 5.112249e-52 | -8.615850e-47 |
| Msa0597240 | Msa1390760 | 0.896679 | 2.925870e-76 | -8.615850e-47 |
| Msa0597240 | Msa1407550 | 0.829235 | 5.765312e-55 | -8.615850e-47 |
| Msa0597240 | Msa1410570 | 0.802699 | 4.957362e-49 | -8.615850e-47 |
| Msa0597240 | Msa1413570 | 0.812958 | 3.262212e-51 | -8.615850e-47 |
| Msa0597240 | Msa1423050 | 0.822786 | 1.966479e-53 | -8.615850e-47 |
| Msa0597240 | Msa1424570 | 0.814928 | 1.200086e-51 | -8.615850e-47 |
| Msa0597240 | Msa1425070 | 0.810779 | 9.726599e-51 | -8.615850e-47 |
| Msa0597240 | Msa1432310 | 0.842776 | 2.103523e-58 | -8.615850e-47 |
| Msa0597240 | Msa1446410 | 0.812717 | 3.682968e-51 | -8.615850e-47 |
| Msa0597240 | Msa1449160 | 0.827876 | 1.227704e-54 | -8.615850e-47 |
| Msa0597240 | Msa1450560 | 0.848742 | 5.049609e-60 | -8.615850e-47 |
| Msa0597240 | Msa1453530 | 0.858783 | 6.497301e-63 | -8.615850e-47 |
| Msa0597240 | Msa1463570 | 0.864937 | 8.485358e-65 | -8.615850e-47 |
| Msa0597240 | Msa1465700 | 0.877451 | 6.218556e-69 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0597240 | MtrunA17_Chr4g0047021 | 98.790 | 248 | 3 | 0 | 2 | 249 | 1 | 248 | 0.0 | 496 |
| Msa0597240 | MtrunA17_Chr7g0234621 | 95.565 | 248 | 11 | 0 | 2 | 249 | 1 | 248 | 3.44e-175 | 481 |
| Msa0597240 | MtrunA17_Chr2g0282411 | 95.565 | 248 | 11 | 0 | 2 | 249 | 1 | 248 | 1.49e-174 | 480 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0597240 | AT5G10360.1 | 90.763 | 249 | 21 | 1 | 2 | 248 | 1 | 249 | 7.61e-163 | 451 |
| Msa0597240 | AT4G31700.1 | 90.400 | 250 | 22 | 1 | 2 | 249 | 1 | 250 | 7.40e-156 | 433 |
| Msa0597240 | AT5G10360.2 | 72.691 | 249 | 14 | 2 | 2 | 248 | 1 | 197 | 3.95e-118 | 335 |
| Msa0597240 | AT4G31700.2 | 90.426 | 188 | 16 | 1 | 64 | 249 | 1 | 188 | 5.57e-109 | 312 |
Find 93 sgRNAs with CRISPR-Local
Find 191 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATATTGCAGCCGTGCTTTC+TGG | 0.027256 | 4_2:+29200056 | Msa0597240:intron |
| TTATCAATTTGATGTTATTT+TGG | 0.155467 | 4_2:+29201962 | Msa0597240:three_prime_UTR |
| TTGCTCTCTGCAGGAGTTTA+AGG | 0.158668 | 4_2:+29200206 | Msa0597240:intron |
| GTTGAACAGCTTACGGATTT+TGG | 0.198177 | 4_2:-29201060 | None:intergenic |
| TTAATCATCGCAACTTATAA+TGG | 0.258242 | 4_2:-29202013 | None:intergenic |
| CAATTCTTGCTCGCTTCCTT+TGG | 0.278485 | 4_2:-29201594 | None:intergenic |
| ATAATAAATGTTAGGATAGT+TGG | 0.294989 | 4_2:+29202128 | Msa0597240:three_prime_UTR |
| GTGACCAATCGTTGTATCTT+TGG | 0.296066 | 4_2:-29201559 | None:intergenic |
| GGAAGTTCTTGGTGATGCTT+TGG | 0.339745 | 4_2:+29200096 | Msa0597240:CDS |
| TGAGATTTCATTTGAATTGA+AGG | 0.342708 | 4_2:+29201920 | Msa0597240:three_prime_UTR |
| ATATTGCAGCCGTGCTTTCT+GGG | 0.350681 | 4_2:+29200057 | Msa0597240:intron |
| AAGTACAGCTGTAGGATAAT+AGG | 0.351903 | 4_2:+29202065 | Msa0597240:three_prime_UTR |
| TTCCCTCTGCTCCTTCAATC+TGG | 0.366847 | 4_2:-29201683 | None:intergenic |
| CTCTTAGGACCTCTCATCCT+TGG | 0.367925 | 4_2:-29201032 | None:intergenic |
| AAAGGTGATAATGATCTTCC+AGG | 0.375447 | 4_2:+29200990 | Msa0597240:CDS |
| GTCAACACTCCCTGCTTCAT+TGG | 0.384872 | 4_2:-29200273 | None:intergenic |
| TGTTGACCCCTGGCCGTGTT+AGG | 0.390290 | 4_2:+29200289 | Msa0597240:CDS |
| GGCGCAATGGAGAGCGTAGA+AGG | 0.390771 | 4_2:+29200904 | Msa0597240:CDS |
| TGCTCTCTGCAGGAGTTTAA+GGG | 0.392051 | 4_2:+29200207 | Msa0597240:intron |
| TGCGATGATTAACAATGAAC+AGG | 0.394403 | 4_2:+29202024 | Msa0597240:three_prime_UTR |
| AGGATCTCACAGGAAGTTCT+TGG | 0.420484 | 4_2:+29200085 | Msa0597240:CDS |
| GAAGTTCTTGGTGATGCTTT+GGG | 0.420593 | 4_2:+29200097 | Msa0597240:CDS |
| ACTCCTTGCTTCCAGATTGA+AGG | 0.422012 | 4_2:+29201672 | Msa0597240:CDS |
| TGGCTTAGCACTGGATAGTC+TGG | 0.428627 | 4_2:-29201737 | None:intergenic |
| GATAGTTGGTTTGTTAAAAG+TGG | 0.430739 | 4_2:+29202142 | Msa0597240:three_prime_UTR |
| CGCTTCCTTTGGAGTGTCAA+AGG | 0.447165 | 4_2:-29201583 | None:intergenic |
| AACTTGGTTATTGTTAAGAA+AGG | 0.454665 | 4_2:+29200972 | Msa0597240:CDS |
| TCAACACTCCCTGCTTCATT+GGG | 0.455023 | 4_2:-29200272 | None:intergenic |
| CTGACATCCAGTGGTTGGAT+TGG | 0.459762 | 4_2:-29199367 | None:intergenic |
| TTGTTTGATTGCAGGGAAGA+AGG | 0.460053 | 4_2:+29201525 | Msa0597240:intron |
| TTGACAGGTTGAACAGCTTA+CGG | 0.462619 | 4_2:-29201067 | None:intergenic |
| AGCAAGAGCCTAACACGGCC+AGG | 0.463109 | 4_2:-29200297 | None:intergenic |
| ACAAGGATTCCCAATGAAGC+AGG | 0.478682 | 4_2:+29200263 | Msa0597240:CDS |
| GCAGCTTACAGCTAGAGATA+TGG | 0.481546 | 4_2:+29201775 | Msa0597240:three_prime_UTR |
| TTCTTCTGACATCCAGTGGT+TGG | 0.481727 | 4_2:-29199372 | None:intergenic |
| AAGTTCAAAACAGAGAGGTC+GGG | 0.481755 | 4_2:-29200954 | None:intergenic |
| GCTGCTTATGCTGTGGCAGA+TGG | 0.483327 | 4_2:-29201757 | None:intergenic |
| GCACATCATCATCCTTTGAC+AGG | 0.490483 | 4_2:-29201082 | None:intergenic |
| TGAACAGGTTTAGCTTGTAA+AGG | 0.493498 | 4_2:+29202039 | Msa0597240:three_prime_UTR |
| AATCAGAAACTTACCATCCT+TGG | 0.507683 | 4_2:-29201141 | None:intergenic |
| AACGTTGCCAATCCAACCAC+TGG | 0.507932 | 4_2:+29199360 | Msa0597240:CDS |
| TCATTAGTCTTGTTCCATGA+GGG | 0.522530 | 4_2:+29201823 | Msa0597240:three_prime_UTR |
| GCAAGAGCCTAACACGGCCA+GGG | 0.526221 | 4_2:-29200296 | None:intergenic |
| CAAGAATTGCAGACAAGAAG+AGG | 0.527902 | 4_2:+29201608 | Msa0597240:CDS |
| GGTTATGTCTTCAAGATCAC+TGG | 0.529877 | 4_2:+29200228 | Msa0597240:CDS |
| AAGCTTCTTCTGACATCCAG+TGG | 0.530433 | 4_2:-29199376 | None:intergenic |
| GTTTATCATTAACACCCTCA+TGG | 0.538364 | 4_2:-29201837 | None:intergenic |
| TATGTCTTCAAGATCACTGG+TGG | 0.541337 | 4_2:+29200231 | Msa0597240:CDS |
| TTCATTAGTCTTGTTCCATG+AGG | 0.544368 | 4_2:+29201822 | Msa0597240:three_prime_UTR |
| AAGCAGGGAGTGTTGACCCC+TGG | 0.544754 | 4_2:+29200279 | Msa0597240:CDS |
| CTTCCGTGTCCACGGAAACA+AGG | 0.545510 | 4_2:-29200882 | None:intergenic |
| TTCTCAACATCAGTAAGCCC+TGG | 0.548857 | 4_2:-29201008 | None:intergenic |
| GCCGTGCTTTCTGGGACAAG+AGG | 0.553103 | 4_2:+29200065 | Msa0597240:intron |
| CAAGTTCAAAACAGAGAGGT+CGG | 0.553854 | 4_2:-29200955 | None:intergenic |
| GGAACGCCGAAGTGAGAGCT+TGG | 0.554466 | 4_2:+29201702 | Msa0597240:CDS |
| CTTGTTTCCGTGGACACGGA+AGG | 0.556226 | 4_2:+29200883 | Msa0597240:CDS |
| CAGAAACTTACCATCCTTGG+TGG | 0.557776 | 4_2:-29201138 | None:intergenic |
| TCCTCTTGTCCCAGAAAGCA+CGG | 0.564472 | 4_2:-29200066 | None:intergenic |
| CGTGGACACGGAAGGCGCAA+TGG | 0.565614 | 4_2:+29200891 | Msa0597240:CDS |
| ACTCCTTGTTTCCGTGGACA+CGG | 0.569669 | 4_2:+29200879 | Msa0597240:CDS |
| AGCTCCAAAGATACAACGAT+TGG | 0.570130 | 4_2:+29201555 | Msa0597240:CDS |
| GCAGGAACTCCTTGTTTCCG+TGG | 0.571103 | 4_2:+29200873 | Msa0597240:intron |
| CGTAGAAGGAAGTCTGTTCG+TGG | 0.573391 | 4_2:+29200918 | Msa0597240:CDS |
| GCTCCTTCAATCTGGAAGCA+AGG | 0.577913 | 4_2:-29201675 | None:intergenic |
| CCTTGGTGGTGAAAGTTCTA+CGG | 0.579080 | 4_2:-29201124 | None:intergenic |
| CATCGCAACTTATAATGGAA+AGG | 0.579252 | 4_2:-29202008 | None:intergenic |
| TTCCAGATTGAAGGAGCAGA+GGG | 0.584168 | 4_2:+29201681 | Msa0597240:CDS |
| CAAGAAGAGGAGAATTGCTA+AGG | 0.587376 | 4_2:+29201621 | Msa0597240:CDS |
| AGAACTTTCACCACCAAGGA+TGG | 0.589936 | 4_2:+29201128 | Msa0597240:CDS |
| CATTGCGCCTTCCGTGTCCA+CGG | 0.591891 | 4_2:-29200890 | None:intergenic |
| CTGGGACAAGAGGATCTCAC+AGG | 0.592723 | 4_2:+29200075 | Msa0597240:CDS |
| TAAGCTGTTCAACCTGTCAA+AGG | 0.594543 | 4_2:+29201070 | Msa0597240:CDS |
| AGTTCAAAACAGAGAGGTCG+GGG | 0.595017 | 4_2:-29200953 | None:intergenic |
| TTACTGATGTTGAGAAGCCA+AGG | 0.596042 | 4_2:+29201015 | Msa0597240:CDS |
| GTTGAGAAGCCAAGGATGAG+AGG | 0.601224 | 4_2:+29201023 | Msa0597240:CDS |
| TGTGGCAGATGGCTTAGCAC+TGG | 0.603451 | 4_2:-29201746 | None:intergenic |
| AAGGTGATAATGATCTTCCA+GGG | 0.607328 | 4_2:+29200991 | Msa0597240:CDS |
| AAAGGAATAAGTACAGCTGT+AGG | 0.608411 | 4_2:+29202057 | Msa0597240:three_prime_UTR |
| GTTAGGCTCTTGCTCCATAG+AGG | 0.608724 | 4_2:+29200306 | Msa0597240:CDS |
| TCACTCCTTTGACACTCCAA+AGG | 0.610174 | 4_2:+29201578 | Msa0597240:CDS |
| TCTTAGCCAAGCTCTCACTT+CGG | 0.610174 | 4_2:-29201708 | None:intergenic |
| GTGAGAGCTTGGCTAAGAAG+AGG | 0.611225 | 4_2:+29201713 | Msa0597240:CDS |
| CAAGAGCCTAACACGGCCAG+GGG | 0.618346 | 4_2:-29200295 | None:intergenic |
| CTTCCAGATTGAAGGAGCAG+AGG | 0.620391 | 4_2:+29201680 | Msa0597240:CDS |
| ATGTCTTCAAGATCACTGGT+GGG | 0.622519 | 4_2:+29200232 | Msa0597240:CDS |
| GGTGGTGAAAGTTCTACGGT+AGG | 0.627958 | 4_2:-29201120 | None:intergenic |
| CAAGGATTCCCAATGAAGCA+GGG | 0.635106 | 4_2:+29200264 | Msa0597240:CDS |
| ACTGGTGGGTGTGACAAACA+AGG | 0.636404 | 4_2:+29200246 | Msa0597240:CDS |
| AATTGCTAAGGCAAAATCAG+AGG | 0.653481 | 4_2:+29201633 | Msa0597240:CDS |
| GCTGTAAGCTGCTTATGCTG+TGG | 0.655143 | 4_2:-29201764 | None:intergenic |
| CCGTAGAACTTTCACCACCA+AGG | 0.691015 | 4_2:+29201124 | Msa0597240:CDS |
| TATGGAGCAAGAGCCTAACA+CGG | 0.710814 | 4_2:-29200302 | None:intergenic |
| TAACCAAGTTCAAAACAGAG+AGG | 0.738467 | 4_2:-29200959 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTATATATCCTTATATTAA+GGG | + | chr4_2:29201186-29201205 | Msa0597240:intron | 10.0% |
| !!! | TTTTTGAAATAATAAATGTT+AGG | + | chr4_2:29202120-29202139 | Msa0597240:three_prime_UTR | 10.0% |
| !! | TATAAGGATATATAAAGAAA+TGG | - | chr4_2:29201182-29201201 | None:intergenic | 15.0% |
| !! | CTTTATATATCCTTATATTA+AGG | + | chr4_2:29201185-29201204 | Msa0597240:intron | 15.0% |
| !!! | TTATCAATTTGATGTTATTT+TGG | + | chr4_2:29201962-29201981 | Msa0597240:three_prime_UTR | 15.0% |
| !! | CAGAAAATTGAAAAGAATTT+CGG | - | chr4_2:29199554-29199573 | None:intergenic | 20.0% |
| !! | TAGCTTATGAAAATAGTTTA+TGG | + | chr4_2:29199808-29199827 | Msa0597240:intron | 20.0% |
| !!! | TTAAGTTGTTTATCAAAACA+AGG | + | chr4_2:29199941-29199960 | Msa0597240:intron | 20.0% |
| !!! | TTTTTGTGAAGTTATTTATG+TGG | + | chr4_2:29200004-29200023 | Msa0597240:intron | 20.0% |
| !! | TAAATAGATTGAAGATTTGA+AGG | - | chr4_2:29200347-29200366 | None:intergenic | 20.0% |
| !! | ACATGAGATAAATAGTAAAA+TGG | - | chr4_2:29200475-29200494 | None:intergenic | 20.0% |
| !! | AAGAATATTACTTTCATTGA+AGG | + | chr4_2:29201346-29201365 | Msa0597240:intron | 20.0% |
| !! | ATAATAAATGTTAGGATAGT+TGG | + | chr4_2:29202128-29202147 | Msa0597240:three_prime_UTR | 20.0% |
| !!! | TCAATATGTTTTGATATGCA+TGG | + | chr4_2:29199636-29199655 | Msa0597240:intron | 25.0% |
| !! | CATTGTCATTTATCTGAATT+TGG | + | chr4_2:29199668-29199687 | Msa0597240:intron | 25.0% |
| !!! | ATTTGGTTTGAACTGATATT+TGG | + | chr4_2:29199685-29199704 | Msa0597240:intron | 25.0% |
| !! | ACTATTTTCATAAGCTATCT+TGG | - | chr4_2:29199805-29199824 | None:intergenic | 25.0% |
| !!! | TTTATTTTATCGTGTGTAGT+AGG | + | chr4_2:29199853-29199872 | Msa0597240:intron | 25.0% |
| ! | TTACAATGCTCTACAAAATA+AGG | - | chr4_2:29200163-29200182 | None:intergenic | 25.0% |
| ! | AAAAAAAAATGCTACCTCTA+TGG | - | chr4_2:29200323-29200342 | None:intergenic | 25.0% |
| ! | TCTTCAATCTATTTACCTTT+CGG | + | chr4_2:29200352-29200371 | Msa0597240:intron | 25.0% |
| ! | CGTTCATAAATTTATAGTAG+TGG | + | chr4_2:29200426-29200445 | Msa0597240:intron | 25.0% |
| ! | TCATAAATTTATAGTAGTGG+AGG | + | chr4_2:29200429-29200448 | Msa0597240:intron | 25.0% |
| ! | GTTATCTCTAATATTACATG+TGG | - | chr4_2:29200557-29200576 | None:intergenic | 25.0% |
| !! | AGTTCTTTTCATAAAGTTAG+TGG | - | chr4_2:29200605-29200624 | None:intergenic | 25.0% |
| ! | TCATCCAAAACTATTTAACT+AGG | - | chr4_2:29200637-29200656 | None:intergenic | 25.0% |
| !!! | TTAAATAGTTTTGGATGAGT+GGG | + | chr4_2:29200639-29200658 | Msa0597240:intron | 25.0% |
| ! | AACAATAATCATTGTGATCA+TGG | - | chr4_2:29200743-29200762 | None:intergenic | 25.0% |
| ! | GCAAATAATGAAATACTAAG+TGG | - | chr4_2:29200802-29200821 | None:intergenic | 25.0% |
| ! | CTTAGTATTTCATTATTTGC+AGG | + | chr4_2:29200802-29200821 | Msa0597240:intron | 25.0% |
| ! | AACTTGGTTATTGTTAAGAA+AGG | + | chr4_2:29200972-29200991 | Msa0597240:CDS | 25.0% |
| ! | ATATATCCTTATATTAAGGG+TGG | + | chr4_2:29201189-29201208 | Msa0597240:intron | 25.0% |
| ! | AGAACAAAAATGAATACAAG+TGG | - | chr4_2:29201288-29201307 | None:intergenic | 25.0% |
| ! | TTCATTACAAATGTCTGTAT+TGG | - | chr4_2:29201487-29201506 | None:intergenic | 25.0% |
| ! | GTAATGAATTGTAATCTTAG+TGG | + | chr4_2:29201499-29201518 | Msa0597240:intron | 25.0% |
| ! | TGAGATTTCATTTGAATTGA+AGG | + | chr4_2:29201920-29201939 | Msa0597240:three_prime_UTR | 25.0% |
| ! | TTAATCATCGCAACTTATAA+TGG | - | chr4_2:29202016-29202035 | None:intergenic | 25.0% |
| GAAAATGAAGAGAGAGTAAA+TGG | - | chr4_2:29199433-29199452 | None:intergenic | 30.0% | |
| CCAACATAGATTTATGAACA+TGG | - | chr4_2:29199510-29199529 | None:intergenic | 30.0% | |
| CCATGTTCATAAATCTATGT+TGG | + | chr4_2:29199507-29199526 | Msa0597240:intron | 30.0% | |
| ATATGACTGTAGTGTAAATC+TGG | + | chr4_2:29199604-29199623 | Msa0597240:intron | 30.0% | |
| TTAAACAAACCAATCCAAAC+AGG | - | chr4_2:29199713-29199732 | None:intergenic | 30.0% | |
| ! | TGTAGAAATAAGTTGGAAAC+AGG | - | chr4_2:29199776-29199795 | None:intergenic | 30.0% |
| GTGAACTTGTAGAAATAAGT+TGG | - | chr4_2:29199783-29199802 | None:intergenic | 30.0% | |
| TTGCCTCTTAGTATTACTAT+CGG | + | chr4_2:29200400-29200419 | Msa0597240:intron | 30.0% | |
| ! | TATCTCATGTGATTTTGCAT+TGG | + | chr4_2:29200485-29200504 | Msa0597240:intron | 30.0% |
| ! | GTGATTTTGCATTGGATTAT+TGG | + | chr4_2:29200493-29200512 | Msa0597240:intron | 30.0% |
| ! | GCATATGTAGTTATTTCAGT+AGG | + | chr4_2:29200523-29200542 | Msa0597240:intron | 30.0% |
| CCAAAACTATTTAACTAGGA+GGG | - | chr4_2:29200633-29200652 | None:intergenic | 30.0% | |
| TCCAAAACTATTTAACTAGG+AGG | - | chr4_2:29200634-29200653 | None:intergenic | 30.0% | |
| !!! | GTTAAATAGTTTTGGATGAG+TGG | + | chr4_2:29200638-29200657 | Msa0597240:intron | 30.0% |
| ! | TTATGCATTTTGCATTTTGC+AGG | + | chr4_2:29200855-29200874 | Msa0597240:intron | 30.0% |
| ACAAAAATGAATACAAGTGG+AGG | - | chr4_2:29201285-29201304 | None:intergenic | 30.0% | |
| ACAGTATACATTGTCTAGAT+TGG | + | chr4_2:29201381-29201400 | Msa0597240:intron | 30.0% | |
| CAGTATACATTGTCTAGATT+GGG | + | chr4_2:29201382-29201401 | Msa0597240:intron | 30.0% | |
| AGTATACATTGTCTAGATTG+GGG | + | chr4_2:29201383-29201402 | Msa0597240:intron | 30.0% | |
| !! | CTGTATTGGTACAATTTTAC+CGG | - | chr4_2:29201473-29201492 | None:intergenic | 30.0% |
| !!! | TTGATGTTATTTTGGCACAA+TGG | + | chr4_2:29201970-29201989 | Msa0597240:three_prime_UTR | 30.0% |
| !! | GATAGTTGGTTTGTTAAAAG+TGG | + | chr4_2:29202142-29202161 | Msa0597240:three_prime_UTR | 30.0% |
| TCTCCGATAGTAATACTAAG+AGG | - | chr4_2:29200406-29200425 | None:intergenic | 35.0% | |
| ! | CCCTCCTAGTTAAATAGTTT+TGG | + | chr4_2:29200630-29200649 | Msa0597240:intron | 35.0% |
| TGGGAAACATGCATATAGTA+TGG | + | chr4_2:29200658-29200677 | Msa0597240:intron | 35.0% | |
| AAAAAATCCATGCCATAGTG+AGG | + | chr4_2:29200683-29200702 | Msa0597240:intron | 35.0% | |
| AAAAATCCATGCCATAGTGA+GGG | + | chr4_2:29200684-29200703 | Msa0597240:intron | 35.0% | |
| ! | GAGTAAGCTTCTTTTCTACT+TGG | + | chr4_2:29200824-29200843 | Msa0597240:intron | 35.0% |
| TAACCAAGTTCAAAACAGAG+AGG | - | chr4_2:29200962-29200981 | None:intergenic | 35.0% | |
| ! | AAAGGTGATAATGATCTTCC+AGG | + | chr4_2:29200990-29201009 | Msa0597240:CDS | 35.0% |
| ! | AAGGTGATAATGATCTTCCA+GGG | + | chr4_2:29200991-29201010 | Msa0597240:CDS | 35.0% |
| AATCAGAAACTTACCATCCT+TGG | - | chr4_2:29201144-29201163 | None:intergenic | 35.0% | |
| AGAAATGGTTACGATATTCG+TGG | - | chr4_2:29201167-29201186 | None:intergenic | 35.0% | |
| TATCCTTATATTAAGGGTGG+TGG | + | chr4_2:29201192-29201211 | Msa0597240:intron | 35.0% | |
| ATCCTTATATTAAGGGTGGT+GGG | + | chr4_2:29201193-29201212 | Msa0597240:intron | 35.0% | |
| AAACAGTTGTCCAAACTACT+AGG | + | chr4_2:29201249-29201268 | Msa0597240:intron | 35.0% | |
| AACAGTTGTCCAAACTACTA+GGG | + | chr4_2:29201250-29201269 | Msa0597240:intron | 35.0% | |
| AATCGCAAATTGTGAGGAAA+CGG | - | chr4_2:29201435-29201454 | None:intergenic | 35.0% | |
| AATTGCTAAGGCAAAATCAG+AGG | + | chr4_2:29201633-29201652 | Msa0597240:CDS | 35.0% | |
| !! | TTCATTAGTCTTGTTCCATG+AGG | + | chr4_2:29201822-29201841 | Msa0597240:three_prime_UTR | 35.0% |
| !! | TCATTAGTCTTGTTCCATGA+GGG | + | chr4_2:29201823-29201842 | Msa0597240:three_prime_UTR | 35.0% |
| GTTTATCATTAACACCCTCA+TGG | - | chr4_2:29201840-29201859 | None:intergenic | 35.0% | |
| ! | CATCGCAACTTATAATGGAA+AGG | - | chr4_2:29202011-29202030 | None:intergenic | 35.0% |
| TGCGATGATTAACAATGAAC+AGG | + | chr4_2:29202024-29202043 | Msa0597240:three_prime_UTR | 35.0% | |
| !! | TGAACAGGTTTAGCTTGTAA+AGG | + | chr4_2:29202039-29202058 | Msa0597240:three_prime_UTR | 35.0% |
| AAAGGAATAAGTACAGCTGT+AGG | + | chr4_2:29202057-29202076 | Msa0597240:three_prime_UTR | 35.0% | |
| AAGTACAGCTGTAGGATAAT+AGG | + | chr4_2:29202065-29202084 | Msa0597240:three_prime_UTR | 35.0% | |
| ! | ACTGATATTTGGAGCCTGTT+TGG | + | chr4_2:29199696-29199715 | Msa0597240:intron | 40.0% |
| ! | TATTTGGAGCCTGTTTGGAT+TGG | + | chr4_2:29199701-29199720 | Msa0597240:intron | 40.0% |
| !! | GAAGTTCTTGGTGATGCTTT+GGG | + | chr4_2:29200097-29200116 | Msa0597240:CDS | 40.0% |
| GGTTATGTCTTCAAGATCAC+TGG | + | chr4_2:29200228-29200247 | Msa0597240:CDS | 40.0% | |
| TATGTCTTCAAGATCACTGG+TGG | + | chr4_2:29200231-29200250 | Msa0597240:CDS | 40.0% | |
| ATGTCTTCAAGATCACTGGT+GGG | + | chr4_2:29200232-29200251 | Msa0597240:CDS | 40.0% | |
| TAAAGTTAGTGGAGACGTTG+AGG | - | chr4_2:29200594-29200613 | None:intergenic | 40.0% | |
| AAGTTCAAAACAGAGAGGTC+GGG | - | chr4_2:29200957-29200976 | None:intergenic | 40.0% | |
| CAAGTTCAAAACAGAGAGGT+CGG | - | chr4_2:29200958-29200977 | None:intergenic | 40.0% | |
| TTACTGATGTTGAGAAGCCA+AGG | + | chr4_2:29201015-29201034 | Msa0597240:CDS | 40.0% | |
| ! | GTTGAACAGCTTACGGATTT+TGG | - | chr4_2:29201063-29201082 | None:intergenic | 40.0% |
| ! | TTGACAGGTTGAACAGCTTA+CGG | - | chr4_2:29201070-29201089 | None:intergenic | 40.0% |
| TAAGCTGTTCAACCTGTCAA+AGG | + | chr4_2:29201070-29201089 | Msa0597240:CDS | 40.0% | |
| TCCTTATATTAAGGGTGGTG+GGG | + | chr4_2:29201194-29201213 | Msa0597240:intron | 40.0% | |
| ACAGTTGTCCAAACTACTAG+GGG | + | chr4_2:29201251-29201270 | Msa0597240:intron | 40.0% | |
| AAACGGCACTTCTTTCAAAC+GGG | - | chr4_2:29201418-29201437 | None:intergenic | 40.0% | |
| GAAACGGCACTTCTTTCAAA+CGG | - | chr4_2:29201419-29201438 | None:intergenic | 40.0% | |
| AAGGACAATCGCAAATTGTG+AGG | - | chr4_2:29201441-29201460 | None:intergenic | 40.0% | |
| ! | ATTTTACCGGATGTCACTGA+AGG | - | chr4_2:29201460-29201479 | None:intergenic | 40.0% |
| !! | AGTGGTTGTTGTTTGATTGC+AGG | + | chr4_2:29201517-29201536 | Msa0597240:intron | 40.0% |
| !! | GTGGTTGTTGTTTGATTGCA+GGG | + | chr4_2:29201518-29201537 | Msa0597240:intron | 40.0% |
| TTGTTTGATTGCAGGGAAGA+AGG | + | chr4_2:29201525-29201544 | Msa0597240:intron | 40.0% | |
| AGCTCCAAAGATACAACGAT+TGG | + | chr4_2:29201555-29201574 | Msa0597240:CDS | 40.0% | |
| GTGACCAATCGTTGTATCTT+TGG | - | chr4_2:29201562-29201581 | None:intergenic | 40.0% | |
| CAAGAATTGCAGACAAGAAG+AGG | + | chr4_2:29201608-29201627 | Msa0597240:CDS | 40.0% | |
| CAAGAAGAGGAGAATTGCTA+AGG | + | chr4_2:29201621-29201640 | Msa0597240:CDS | 40.0% | |
| TTCTTCTGACATCCAGTGGT+TGG | - | chr4_2:29199375-29199394 | None:intergenic | 45.0% | |
| AAGCTTCTTCTGACATCCAG+TGG | - | chr4_2:29199379-29199398 | None:intergenic | 45.0% | |
| TATATTGCAGCCGTGCTTTC+TGG | + | chr4_2:29200056-29200075 | Msa0597240:intron | 45.0% | |
| ATATTGCAGCCGTGCTTTCT+GGG | + | chr4_2:29200057-29200076 | Msa0597240:intron | 45.0% | |
| AGGATCTCACAGGAAGTTCT+TGG | + | chr4_2:29200085-29200104 | Msa0597240:CDS | 45.0% | |
| !! | GGAAGTTCTTGGTGATGCTT+TGG | + | chr4_2:29200096-29200115 | Msa0597240:CDS | 45.0% |
| ! | GTTGTGATTTTGCTCTCTGC+AGG | + | chr4_2:29200197-29200216 | Msa0597240:intron | 45.0% |
| TTGCTCTCTGCAGGAGTTTA+AGG | + | chr4_2:29200206-29200225 | Msa0597240:intron | 45.0% | |
| TGCTCTCTGCAGGAGTTTAA+GGG | + | chr4_2:29200207-29200226 | Msa0597240:intron | 45.0% | |
| ACAAGGATTCCCAATGAAGC+AGG | + | chr4_2:29200263-29200282 | Msa0597240:CDS | 45.0% | |
| CAAGGATTCCCAATGAAGCA+GGG | + | chr4_2:29200264-29200283 | Msa0597240:CDS | 45.0% | |
| TCAACACTCCCTGCTTCATT+GGG | - | chr4_2:29200275-29200294 | None:intergenic | 45.0% | |
| TATGGAGCAAGAGCCTAACA+CGG | - | chr4_2:29200305-29200324 | None:intergenic | 45.0% | |
| GCAACATACAGTATGCCGAA+AGG | - | chr4_2:29200370-29200389 | None:intergenic | 45.0% | |
| ! | TGGAGACGTTGAGGTATTTG+TGG | - | chr4_2:29200585-29200604 | None:intergenic | 45.0% |
| AGTTCAAAACAGAGAGGTCG+GGG | - | chr4_2:29200956-29200975 | None:intergenic | 45.0% | |
| !! | CGACCTCTCTGTTTTGAACT+TGG | + | chr4_2:29200956-29200975 | Msa0597240:CDS | 45.0% |
| TTCTCAACATCAGTAAGCCC+TGG | - | chr4_2:29201011-29201030 | None:intergenic | 45.0% | |
| ! | CGGATTTTGGATGCTCTCTT+AGG | - | chr4_2:29201050-29201069 | None:intergenic | 45.0% |
| GCACATCATCATCCTTTGAC+AGG | - | chr4_2:29201085-29201104 | None:intergenic | 45.0% | |
| !! | CCTTGGTGGTGAAAGTTCTA+CGG | - | chr4_2:29201127-29201146 | None:intergenic | 45.0% |
| AGAACTTTCACCACCAAGGA+TGG | + | chr4_2:29201128-29201147 | Msa0597240:CDS | 45.0% | |
| CAGAAACTTACCATCCTTGG+TGG | - | chr4_2:29201141-29201160 | None:intergenic | 45.0% | |
| ! | CCTTATATTAAGGGTGGTGG+GGG | + | chr4_2:29201195-29201214 | Msa0597240:intron | 45.0% |
| CTATGAAGCCCCTAGTAGTT+TGG | - | chr4_2:29201262-29201281 | None:intergenic | 45.0% | |
| GATTGTCCTTCAGTGACATC+CGG | + | chr4_2:29201451-29201470 | Msa0597240:intron | 45.0% | |
| TCACTCCTTTGACACTCCAA+AGG | + | chr4_2:29201578-29201597 | Msa0597240:CDS | 45.0% | |
| CAATTCTTGCTCGCTTCCTT+TGG | - | chr4_2:29201597-29201616 | None:intergenic | 45.0% | |
| ACTCCTTGCTTCCAGATTGA+AGG | + | chr4_2:29201672-29201691 | Msa0597240:CDS | 45.0% | |
| TTCCAGATTGAAGGAGCAGA+GGG | + | chr4_2:29201681-29201700 | Msa0597240:CDS | 45.0% | |
| TCTTAGCCAAGCTCTCACTT+CGG | - | chr4_2:29201711-29201730 | None:intergenic | 45.0% | |
| GCAGCTTACAGCTAGAGATA+TGG | + | chr4_2:29201775-29201794 | Msa0597240:three_prime_UTR | 45.0% | |
| AACGTTGCCAATCCAACCAC+TGG | + | chr4_2:29199360-29199379 | Msa0597240:CDS | 50.0% | |
| CTGACATCCAGTGGTTGGAT+TGG | - | chr4_2:29199370-29199389 | None:intergenic | 50.0% | |
| TCCTCTTGTCCCAGAAAGCA+CGG | - | chr4_2:29200069-29200088 | None:intergenic | 50.0% | |
| ! | ACTGGTGGGTGTGACAAACA+AGG | + | chr4_2:29200246-29200265 | Msa0597240:CDS | 50.0% |
| GTCAACACTCCCTGCTTCAT+TGG | - | chr4_2:29200276-29200295 | None:intergenic | 50.0% | |
| GTTAGGCTCTTGCTCCATAG+AGG | + | chr4_2:29200306-29200325 | Msa0597240:CDS | 50.0% | |
| TCATGGACAGCCCTACCTTA+GGG | - | chr4_2:29200726-29200745 | None:intergenic | 50.0% | |
| ATCATGGACAGCCCTACCTT+AGG | - | chr4_2:29200727-29200746 | None:intergenic | 50.0% | |
| ! | ACTCCTTGTTTCCGTGGACA+CGG | + | chr4_2:29200879-29200898 | Msa0597240:CDS | 50.0% |
| CGTAGAAGGAAGTCTGTTCG+TGG | + | chr4_2:29200918-29200937 | Msa0597240:CDS | 50.0% | |
| GTTGAGAAGCCAAGGATGAG+AGG | + | chr4_2:29201023-29201042 | Msa0597240:CDS | 50.0% | |
| CTCTTAGGACCTCTCATCCT+TGG | - | chr4_2:29201035-29201054 | None:intergenic | 50.0% | |
| GGTGGTGAAAGTTCTACGGT+AGG | - | chr4_2:29201123-29201142 | None:intergenic | 50.0% | |
| CCGTAGAACTTTCACCACCA+AGG | + | chr4_2:29201124-29201143 | Msa0597240:CDS | 50.0% | |
| CCCCCACCACCCTTAATATA+AGG | - | chr4_2:29201198-29201217 | None:intergenic | 50.0% | |
| !! | CGCTTCCTTTGGAGTGTCAA+AGG | - | chr4_2:29201586-29201605 | None:intergenic | 50.0% |
| GCTCCTTCAATCTGGAAGCA+AGG | - | chr4_2:29201678-29201697 | None:intergenic | 50.0% | |
| CTTCCAGATTGAAGGAGCAG+AGG | + | chr4_2:29201680-29201699 | Msa0597240:CDS | 50.0% | |
| TTCCCTCTGCTCCTTCAATC+TGG | - | chr4_2:29201686-29201705 | None:intergenic | 50.0% | |
| GTGAGAGCTTGGCTAAGAAG+AGG | + | chr4_2:29201713-29201732 | Msa0597240:CDS | 50.0% | |
| ! | TGGCTTAGCACTGGATAGTC+TGG | - | chr4_2:29201740-29201759 | None:intergenic | 50.0% |
| GCTGTAAGCTGCTTATGCTG+TGG | - | chr4_2:29201767-29201786 | None:intergenic | 50.0% | |
| CTGGGACAAGAGGATCTCAC+AGG | + | chr4_2:29200075-29200094 | Msa0597240:CDS | 55.0% | |
| CATGGACAGCCCTACCTTAG+GGG | - | chr4_2:29200725-29200744 | None:intergenic | 55.0% | |
| ! | GCAGGAACTCCTTGTTTCCG+TGG | + | chr4_2:29200873-29200892 | Msa0597240:intron | 55.0% |
| CTTCCGTGTCCACGGAAACA+AGG | - | chr4_2:29200885-29200904 | None:intergenic | 55.0% | |
| CTTGTTTCCGTGGACACGGA+AGG | + | chr4_2:29200883-29200902 | Msa0597240:CDS | 55.0% | |
| TGTGGCAGATGGCTTAGCAC+TGG | - | chr4_2:29201749-29201768 | None:intergenic | 55.0% | |
| GCTGCTTATGCTGTGGCAGA+TGG | - | chr4_2:29201760-29201779 | None:intergenic | 55.0% | |
| !! | GCCGTGCTTTCTGGGACAAG+AGG | + | chr4_2:29200065-29200084 | Msa0597240:intron | 60.0% |
| !! | AAGCAGGGAGTGTTGACCCC+TGG | + | chr4_2:29200279-29200298 | Msa0597240:CDS | 60.0% |
| TGTTGACCCCTGGCCGTGTT+AGG | + | chr4_2:29200289-29200308 | Msa0597240:CDS | 60.0% | |
| CAAGAGCCTAACACGGCCAG+GGG | - | chr4_2:29200298-29200317 | None:intergenic | 60.0% | |
| GCAAGAGCCTAACACGGCCA+GGG | - | chr4_2:29200299-29200318 | None:intergenic | 60.0% | |
| AGCAAGAGCCTAACACGGCC+AGG | - | chr4_2:29200300-29200319 | None:intergenic | 60.0% | |
| CCTTGGCCCTCACTATGGCA+TGG | - | chr4_2:29200693-29200712 | None:intergenic | 60.0% | |
| CCATGCCATAGTGAGGGCCA+AGG | + | chr4_2:29200690-29200709 | Msa0597240:intron | 60.0% | |
| ! | CCCTACCTTAGGGGAGGTGT+GGG | - | chr4_2:29200716-29200735 | None:intergenic | 60.0% |
| CCCACACCTCCCCTAAGGTA+GGG | + | chr4_2:29200713-29200732 | Msa0597240:intron | 60.0% | |
| CATTGCGCCTTCCGTGTCCA+CGG | - | chr4_2:29200893-29200912 | None:intergenic | 60.0% | |
| ! | GGCGCAATGGAGAGCGTAGA+AGG | + | chr4_2:29200904-29200923 | Msa0597240:CDS | 60.0% |
| GGAACGCCGAAGTGAGAGCT+TGG | + | chr4_2:29201702-29201721 | Msa0597240:CDS | 60.0% | |
| GTGGGCCTTGGCCCTCACTA+TGG | - | chr4_2:29200698-29200717 | None:intergenic | 65.0% | |
| ! | CTTAGGGGAGGTGTGGGCCT+TGG | - | chr4_2:29200710-29200729 | None:intergenic | 65.0% |
| CAAGGCCCACACCTCCCCTA+AGG | + | chr4_2:29200708-29200727 | Msa0597240:intron | 65.0% | |
| GCCCACACCTCCCCTAAGGT+AGG | + | chr4_2:29200712-29200731 | Msa0597240:intron | 65.0% | |
| GCCCTACCTTAGGGGAGGTG+TGG | - | chr4_2:29200717-29200736 | None:intergenic | 65.0% | |
| GGACAGCCCTACCTTAGGGG+AGG | - | chr4_2:29200722-29200741 | None:intergenic | 65.0% | |
| ! | CGTGGACACGGAAGGCGCAA+TGG | + | chr4_2:29200891-29200910 | Msa0597240:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 29199348 | 29202170 | 29199348 | ID=Msa0597240;Name=Msa0597240 |
| chr4_2 | mRNA | 29199348 | 29202170 | 29199348 | ID=Msa0597240-mRNA-1;Parent=Msa0597240;Name=Msa0597240-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|1|0.8|1|1|1|5|396|249 |
| chr4_2 | exon | 29199348 | 29199421 | 29199348 | ID=Msa0597240-mRNA-1:exon:7447;Parent=Msa0597240-mRNA-1 |
| chr4_2 | exon | 29200066 | 29200123 | 29200066 | ID=Msa0597240-mRNA-1:exon:7448;Parent=Msa0597240-mRNA-1 |
| chr4_2 | exon | 29200219 | 29200327 | 29200219 | ID=Msa0597240-mRNA-1:exon:7449;Parent=Msa0597240-mRNA-1 |
| chr4_2 | exon | 29200877 | 29201149 | 29200877 | ID=Msa0597240-mRNA-1:exon:7450;Parent=Msa0597240-mRNA-1 |
| chr4_2 | exon | 29201539 | 29202170 | 29201539 | ID=Msa0597240-mRNA-1:exon:7451;Parent=Msa0597240-mRNA-1 |
| chr4_2 | CDS | 29199348 | 29199421 | 29199348 | ID=Msa0597240-mRNA-1:cds;Parent=Msa0597240-mRNA-1 |
| chr4_2 | CDS | 29200066 | 29200123 | 29200066 | ID=Msa0597240-mRNA-1:cds;Parent=Msa0597240-mRNA-1 |
| chr4_2 | CDS | 29200219 | 29200327 | 29200219 | ID=Msa0597240-mRNA-1:cds;Parent=Msa0597240-mRNA-1 |
| chr4_2 | CDS | 29200877 | 29201149 | 29200877 | ID=Msa0597240-mRNA-1:cds;Parent=Msa0597240-mRNA-1 |
| chr4_2 | CDS | 29201539 | 29201774 | 29201539 | ID=Msa0597240-mRNA-1:cds;Parent=Msa0597240-mRNA-1 |
| chr4_2 | three_prime_UTR | 29201775 | 29202170 | 29201775 | ID=Msa0597240-mRNA-1:three_prime_utr;Parent=Msa0597240-mRNA-1 |
| Gene Sequence |
| Protein sequence |
