AlfalfaGEDB | Msa0619230

M. sativa cultivar zhongmu-4 / Msa0619230

KEGG: K02934
GO: GO:0000027 GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005783 GO:0005829 GO:0005840 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0010467 GO:0012505 GO:0015934 GO:0016020 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042221 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0055044 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904
PFAM: PF03868.18

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0619230	ACJ84110.1	99.145	234	2	0	1	234	1	234	5.65e-165	464

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0619230	sp\|P34091\|RL6_MESCR	79.915	234	47	0	1	234	1	234	4.02e-129	367

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001760	Msa0619230	0.872668	2.665454e-67	-8.615850e-47
Msa0003030	Msa0619230	0.827675	1.372544e-54	-8.615850e-47
Msa0003330	Msa0619230	0.885294	9.207106e-72	-8.615850e-47
Msa0020870	Msa0619230	0.807618	4.629104e-50	-8.615850e-47
Msa0027590	Msa0619230	0.875601	2.709787e-68	-8.615850e-47
Msa0037230	Msa0619230	0.814820	1.268317e-51	-8.615850e-47
Msa0040220	Msa0619230	0.858421	8.336684e-63	-8.615850e-47
Msa0042510	Msa0619230	0.900160	9.667652e-78	-8.615850e-47
Msa0071640	Msa0619230	0.801190	1.012211e-48	-8.615850e-47
Msa0072570	Msa0619230	0.849479	3.150574e-60	-8.615850e-47
Msa0075350	Msa0619230	0.818650	1.755175e-52	-8.615850e-47
Msa0079560	Msa0619230	0.895066	1.363900e-75	-8.615850e-47
Msa0086160	Msa0619230	0.808322	3.278651e-50	-8.615850e-47
Msa0087910	Msa0619230	0.860452	2.045214e-63	-8.615850e-47
Msa0094210	Msa0619230	0.864956	8.370355e-65	-8.615850e-47
Msa0114600	Msa0619230	0.809181	2.148271e-50	-8.615850e-47
Msa0116600	Msa0619230	0.837088	6.388433e-57	-8.615850e-47
Msa0116690	Msa0619230	0.828757	7.528340e-55	-8.615850e-47
Msa0602900	Msa0619230	0.906381	1.577233e-80	-8.615850e-47
Msa0605600	Msa0619230	0.806321	8.706653e-50	-8.615850e-47
Msa0605890	Msa0619230	0.881103	3.168023e-70	-8.615850e-47
Msa0609120	Msa0619230	0.836884	7.202929e-57	-8.615850e-47
Msa0619230	Msa0621190	0.902985	5.531424e-79	-8.615850e-47
Msa0619230	Msa0629280	0.805239	1.469260e-49	-8.615850e-47
Msa0619230	Msa0643960	0.905516	3.954771e-80	-8.615850e-47
Msa0619230	Msa0649890	0.850914	1.247358e-60	-8.615850e-47
Msa0619230	Msa0653060	0.825384	4.827899e-54	-8.615850e-47
Msa0619230	Msa0656450	0.913120	8.888327e-84	-8.615850e-47
Msa0619230	Msa0686550	0.862854	3.773081e-64	-8.615850e-47
Msa0619230	Msa0691760	0.882368	1.104692e-70	-8.615850e-47
Msa0619230	Msa0694400	0.911683	4.606005e-83	-8.615850e-47
Msa0619230	Msa0700370	0.867015	1.867874e-65	-8.615850e-47
Msa0619230	Msa0704860	0.913599	5.106294e-84	-8.615850e-47
Msa0619230	Msa0705800	0.807199	5.681215e-50	-8.615850e-47
Msa0619230	Msa0708630	0.884964	1.222626e-71	-8.615850e-47
Msa0619230	Msa0741510	0.840307	9.407682e-58	-8.615850e-47
Msa0619230	Msa0748350	0.809757	1.616348e-50	-8.615850e-47
Msa0619230	Msa0758420	0.840451	8.628777e-58	-8.615850e-47
Msa0619230	Msa0788380	0.856975	2.236429e-62	-8.615850e-47
Msa0619230	Msa0790450	0.880359	5.857244e-70	-8.615850e-47
Msa0619230	Msa0822580	0.805913	1.061193e-49	-8.615850e-47
Msa0619230	Msa0834220	0.833555	4.985688e-56	-8.615850e-47
Msa0619230	Msa0838070	0.836000	1.209237e-56	-8.615850e-47
Msa0619230	Msa0880050	0.833835	4.244907e-56	-8.615850e-47
Msa0619230	Msa0902730	0.832315	1.014185e-55	-8.615850e-47
Msa0619230	Msa0929680	0.853522	2.260083e-61	-8.615850e-47
Msa0619230	Msa0929700	0.914325	2.187332e-84	-8.615850e-47
Msa0619230	Msa0929790	0.819760	9.803980e-53	-8.615850e-47
Msa0619230	Msa0930100	0.847598	1.044932e-59	-8.615850e-47
Msa0619230	Msa0930360	0.887854	9.893194e-73	-8.615850e-47
Msa0619230	Msa0930790	0.881156	3.032163e-70	-8.615850e-47
Msa0619230	Msa0930890	0.839773	1.296448e-57	-8.615850e-47
Msa0619230	Msa1025200	0.819893	9.144257e-53	-8.615850e-47
Msa0619230	Msa1025220	0.831780	1.374740e-55	-8.615850e-47
Msa0619230	Msa1040160	0.825716	4.026958e-54	-8.615850e-47
Msa0619230	Msa1041680	0.835427	1.689009e-56	-8.615850e-47
Msa0619230	Msa1041830	0.800753	1.243285e-48	-8.615850e-47
Msa0619230	Msa1054280	0.853368	2.503161e-61	-8.615850e-47
Msa0619230	Msa1076200	0.822612	2.158407e-53	-8.615850e-47
Msa0619230	Msa1082050	0.859574	3.763693e-63	-8.615850e-47
Msa0619230	Msa1082170	0.802559	5.297710e-49	-8.615850e-47
Msa0619230	Msa1083370	0.829249	5.720859e-55	-8.615850e-47
Msa0619230	Msa1085850	0.806739	7.106930e-50	-8.615850e-47
Msa0619230	Msa1093500	0.828002	1.144962e-54	-8.615850e-47
Msa0619230	Msa1116940	0.823152	1.615648e-53	-8.615850e-47
Msa0619230	Msa1124980	0.842696	2.208165e-58	-8.615850e-47
Msa0619230	Msa1126690	0.886132	4.459801e-72	-8.615850e-47
Msa0619230	Msa1144630	0.849866	2.455198e-60	-8.615850e-47
Msa0619230	Msa1156830	0.819073	1.406616e-52	-8.615850e-47
Msa0619230	Msa1163320	0.846257	2.433532e-59	-8.615850e-47
Msa0619230	Msa1164150	0.815291	9.969497e-52	-8.615850e-47
Msa0619230	Msa1165700	0.808807	2.583217e-50	-8.615850e-47
Msa0619230	Msa1166570	0.834703	2.571755e-56	-8.615850e-47
Msa0619230	Msa1167360	0.843870	1.073791e-58	-8.615850e-47
Msa0619230	Msa1180000	0.879664	1.036059e-69	-8.615850e-47
Msa0619230	Msa1186030	0.850984	1.192532e-60	-8.615850e-47
Msa0619230	Msa1206240	0.820181	7.855448e-53	-8.615850e-47
Msa0619230	Msa1213850	0.827017	1.972882e-54	-8.615850e-47
Msa0619230	Msa1219760	0.830146	3.461255e-55	-8.615850e-47
Msa0619230	Msa1227350	0.850598	1.530918e-60	-8.615850e-47
Msa0619230	Msa1235950	0.882222	1.248457e-70	-8.615850e-47
Msa0619230	Msa1235980	0.890457	9.680150e-74	-8.615850e-47
Msa0619230	Msa1237040	0.894574	2.169181e-75	-8.615850e-47
Msa0619230	Msa1240270	0.823248	1.534322e-53	-8.615850e-47
Msa0619230	Msa1245270	0.832646	8.395038e-56	-8.615850e-47
Msa0619230	Msa1255830	0.807174	5.750036e-50	-8.615850e-47
Msa0619230	Msa1255850	0.822842	1.908337e-53	-8.615850e-47
Msa0619230	Msa1258540	0.853229	2.742923e-61	-8.615850e-47
Msa0619230	Msa1270640	0.858738	6.703198e-63	-8.615850e-47
Msa0619230	Msa1270710	0.859096	5.239218e-63	-8.615850e-47
Msa0619230	Msa1278130	0.826796	2.228845e-54	-8.615850e-47
Msa0619230	Msa1284060	0.829580	4.753355e-55	-8.615850e-47
Msa0619230	Msa1284800	0.875577	2.761443e-68	-8.615850e-47
Msa0619230	Msa1296090	0.844883	5.735998e-59	-8.615850e-47
Msa0619230	Msa1311400	0.800716	1.264805e-48	-8.615850e-47
Msa0619230	Msa1316100	0.853582	2.172777e-61	-8.615850e-47
Msa0619230	Msa1317390	0.905679	3.325621e-80	-8.615850e-47
Msa0619230	Msa1333370	0.825137	5.522545e-54	-8.615850e-47
Msa0619230	Msa1341780	0.809661	1.694773e-50	-8.615850e-47
Msa0619230	Msa1351020	0.919227	5.855988e-87	-8.615850e-47
Msa0619230	Msa1351910	0.830986	2.155937e-55	-8.615850e-47
Msa0619230	Msa1358710	0.829147	6.056297e-55	-8.615850e-47
Msa0619230	Msa1363910	0.868840	4.840406e-66	-8.615850e-47
Msa0619230	Msa1363930	0.853042	3.104256e-61	-8.615850e-47
Msa0619230	Msa1366540	0.808342	3.246373e-50	-8.615850e-47
Msa0619230	Msa1367540	0.808513	2.984384e-50	-8.615850e-47
Msa0619230	Msa1385480	0.894882	1.622873e-75	-8.615850e-47
Msa0619230	Msa1387750	0.899437	1.982965e-77	-8.615850e-47
Msa0619230	Msa1390760	0.999215	1.868104e-296	-8.615850e-47
Msa0619230	Msa1403520	0.828714	7.711135e-55	-8.615850e-47
Msa0619230	Msa1407550	0.891620	3.363921e-74	-8.615850e-47
Msa0619230	Msa1413570	0.916873	1.053584e-85	-8.615850e-47
Msa0619230	Msa1423050	0.832759	7.868431e-56	-8.615850e-47
Msa0619230	Msa1424570	0.868911	4.592403e-66	-8.615850e-47
Msa0619230	Msa1432310	0.911959	3.366163e-83	-8.615850e-47
Msa0619230	Msa1446410	0.857728	1.339385e-62	-8.615850e-47
Msa0619230	Msa1446510	0.866795	2.195776e-65	-8.615850e-47
Msa0619230	Msa1449160	0.840363	9.099142e-58	-8.615850e-47
Msa0619230	Msa1450560	0.886015	4.936549e-72	-8.615850e-47
Msa0619230	Msa1453530	0.848698	5.193739e-60	-8.615850e-47
Msa0619230	Msa1463510	0.810331	1.215712e-50	-8.615850e-47
Msa0619230	Msa1463570	0.890156	1.270281e-73	-8.615850e-47
Msa0619230	Msa1463580	0.800387	1.475811e-48	-8.615850e-47
Msa0619230	Msa1465700	0.888124	7.798122e-73	-8.615850e-47
Msa0619230	Msa1465890	0.827138	1.845745e-54	-8.615850e-47
Msa0123290	Msa0619230	0.816752	4.704082e-52	-8.615850e-47
Msa0127230	Msa0619230	0.884311	2.136525e-71	-8.615850e-47
Msa0128330	Msa0619230	0.894898	1.597965e-75	-8.615850e-47
Msa0132460	Msa0619230	0.884398	1.983817e-71	-8.615850e-47
Msa0134580	Msa0619230	0.878721	2.233739e-69	-8.615850e-47
Msa0146910	Msa0619230	0.825213	5.300017e-54	-8.615850e-47
Msa0167860	Msa0619230	0.906745	1.068542e-80	-8.615850e-47
Msa0168320	Msa0619230	0.882032	1.463630e-70	-8.615850e-47
Msa0174580	Msa0619230	0.880688	4.467261e-70	-8.615850e-47
Msa0175000	Msa0619230	0.801755	7.751605e-49	-8.615850e-47
Msa0182050	Msa0619230	0.888065	8.216944e-73	-8.615850e-47
Msa0182100	Msa0619230	0.883485	4.311387e-71	-8.615850e-47
Msa0183840	Msa0619230	0.830695	2.540785e-55	-8.615850e-47
Msa0188740	Msa0619230	0.864685	1.017658e-64	-8.615850e-47
Msa0191450	Msa0619230	0.876653	1.177175e-68	-8.615850e-47
Msa0191550	Msa0619230	0.877574	5.632177e-69	-8.615850e-47
Msa0192300	Msa0619230	0.896367	3.949489e-76	-8.615850e-47
Msa0194940	Msa0619230	0.843798	1.122389e-58	-8.615850e-47
Msa0195030	Msa0619230	0.841162	5.615369e-58	-8.615850e-47
Msa0216200	Msa0619230	0.834526	2.848094e-56	-8.615850e-47
Msa0219090	Msa0619230	0.834475	2.934440e-56	-8.615850e-47
Msa0233550	Msa0619230	0.894165	3.185690e-75	-8.615850e-47
Msa0235050	Msa0619230	0.810801	9.623404e-51	-8.615850e-47
Msa0237180	Msa0619230	0.828192	1.030357e-54	-8.615850e-47
Msa0369410	Msa0619230	0.843497	1.350960e-58	-8.615850e-47
Msa0371490	Msa0619230	0.893814	4.426533e-75	-8.615850e-47
Msa0373350	Msa0619230	0.826768	2.263064e-54	-8.615850e-47
Msa0376850	Msa0619230	0.885489	7.781743e-72	-8.615850e-47
Msa0377370	Msa0619230	0.822341	2.494914e-53	-8.615850e-47
Msa0377520	Msa0619230	0.873470	1.434450e-67	-8.615850e-47
Msa0382670	Msa0619230	0.878273	3.207745e-69	-8.615850e-47
Msa0387290	Msa0619230	0.837277	5.715783e-57	-8.615850e-47
Msa0388520	Msa0619230	0.868771	5.096861e-66	-8.615850e-47
Msa0416470	Msa0619230	0.850103	2.107797e-60	-8.615850e-47
Msa0426090	Msa0619230	0.909290	6.705966e-82	-8.615850e-47
Msa0426250	Msa0619230	0.896241	4.456130e-76	-8.615850e-47
Msa0430130	Msa0619230	0.809612	1.736464e-50	-8.615850e-47
Msa0436750	Msa0619230	0.801108	1.052000e-48	-8.615850e-47
Msa0450150	Msa0619230	0.815555	8.706327e-52	-8.615850e-47
Msa0472480	Msa0619230	0.906861	9.436545e-81	-8.615850e-47
Msa0473570	Msa0619230	0.802278	6.052756e-49	-8.615850e-47
Msa0475810	Msa0619230	0.830225	3.310263e-55	-8.615850e-47
Msa0481520	Msa0619230	0.857212	1.904127e-62	-8.615850e-47
Msa0482560	Msa0619230	0.835846	1.322750e-56	-8.615850e-47
Msa0239420	Msa0619230	0.897340	1.545490e-76	-8.615850e-47
Msa0256350	Msa0619230	0.833397	5.461549e-56	-8.615850e-47
Msa0264640	Msa0619230	0.822151	2.761746e-53	-8.615850e-47
Msa0270160	Msa0619230	0.868850	4.804182e-66	-8.615850e-47
Msa0274940	Msa0619230	0.846295	2.376528e-59	-8.615850e-47
Msa0277600	Msa0619230	0.882688	8.446048e-71	-8.615850e-47
Msa0281330	Msa0619230	0.831569	1.549718e-55	-8.615850e-47
Msa0281370	Msa0619230	0.874554	6.166592e-68	-8.615850e-47
Msa0301250	Msa0619230	0.900720	5.525163e-78	-8.615850e-47
Msa0313060	Msa0619230	0.898728	3.990565e-77	-8.615850e-47
Msa0315430	Msa0619230	0.897548	1.263453e-76	-8.615850e-47
Msa0315660	Msa0619230	0.836244	1.048251e-56	-8.615850e-47
Msa0340560	Msa0619230	0.821526	3.852165e-53	-8.615850e-47
Msa0346090	Msa0619230	0.804041	2.612581e-49	-8.615850e-47
Msa0485220	Msa0619230	0.843655	1.226201e-58	-8.615850e-47
Msa0511760	Msa0619230	0.900794	5.128010e-78	-8.615850e-47
Msa0516830	Msa0619230	0.885709	6.433473e-72	-8.615850e-47
Msa0517480	Msa0619230	0.865121	7.429328e-65	-8.615850e-47
Msa0521730	Msa0619230	0.801846	7.426339e-49	-8.615850e-47
Msa0540480	Msa0619230	0.807804	4.225674e-50	-8.615850e-47
Msa0547920	Msa0619230	0.913075	9.365962e-84	-8.615850e-47
Msa0552510	Msa0619230	0.805675	1.190700e-49	-8.615850e-47
Msa0573550	Msa0619230	0.915298	6.952486e-85	-8.615850e-47
Msa0574780	Msa0619230	0.875470	3.004719e-68	-8.615850e-47
Msa0578010	Msa0619230	0.906613	1.231150e-80	-8.615850e-47
Msa0579830	Msa0619230	0.841058	5.981962e-58	-8.615850e-47
Msa0582070	Msa0619230	0.847149	1.388525e-59	-8.615850e-47
Msa0597240	Msa0619230	0.897818	9.722654e-77	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0619230	MtrunA17_Chr5g0448021	96.154	234	9	0	1	234	1	234	7.85e-163	449
Msa0619230	MtrunA17_Chr3g0129031	85.897	234	32	1	1	234	1	233	7.16e-145	404
Msa0619230	MtrunA17_Chr3g0129231	85.897	234	32	1	1	234	1	233	1.78e-144	402
Msa0619230	MtrunA17_Chr8g0383131	96.512	172	6	0	1	172	1	172	1.48e-120	341

Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa0619230	AT1G74050.1	81.466	232	43	3	234	2	233	2.08e-122	347
Msa0619230	AT1G74060.1	80.603	232	45	3	234	2	233	1.06e-120	343
Msa0619230	AT1G18540.1	78.879	232	49	3	234	2	233	7.81e-116	330

Find 82 sgRNAs with CRISPR-Local

Find 276 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TCTTCTTGCCGGTAGATTTA+AGG	0.142019	4_2:+70347952	Msa0619230:CDS
GATGGAACTTGAAGTATTTC+AGG	0.215273	4_2:+70349298	Msa0619230:three_prime_UTR
GCACTTTCTTAACTGTAATA+TGG	0.229052	4_2:+70349027	Msa0619230:three_prime_UTR
CCAATTCCTCTGATCAAATC+AGG	0.248411	4_2:-70347381	None:intergenic
TCATCAGCAGGGTAAAATTT+TGG	0.250055	4_2:-70347525	None:intergenic
TTTCAACGGGTACACATAAT+AGG	0.256924	4_2:-70349326	None:intergenic
AGCATGCCAAAGGAAAATTT+TGG	0.277279	4_2:+70349142	Msa0619230:three_prime_UTR
TCTGGATTGCTTCTTGTAAC+TGG	0.291952	4_2:+70348007	Msa0619230:CDS
CACGAACTCGTCTTCTAGTT+TGG	0.298877	4_2:+70348941	Msa0619230:exon
CCTGATTTGATCAGAGGAAT+TGG	0.319315	4_2:+70347381	Msa0619230:CDS
TCAACAGCAGTTTCGGGCTT+AGG	0.337911	4_2:-70347495	None:intergenic
CAAGACACTGACTCGGATAA+AGG	0.338529	4_2:-70349226	None:intergenic
GCAGTTTCGGGCTTAGGTTT+AGG	0.345228	4_2:-70347489	None:intergenic
TCCTTTGAGACGTGTGAATC+AGG	0.346287	4_2:+70348553	Msa0619230:CDS
GAAAGGTATCTGGGCTATTA+AGG	0.349673	4_2:+70347434	Msa0619230:CDS
TGTATCACAAGAAAGGTATC+TGG	0.350934	4_2:+70347424	Msa0619230:CDS
CTCTGATCAAATCAGGGTTT+CGG	0.358025	4_2:-70347374	None:intergenic
CTTCTTGCCGGTAGATTTAA+GGG	0.364740	4_2:+70347953	Msa0619230:CDS
AAGACACTGACTCGGATAAA+GGG	0.388739	4_2:-70349225	None:intergenic
CCAGACTTGAAGACTTATCT+TGG	0.410256	4_2:+70348884	Msa0619230:CDS
CCAAGATAAGTCTTCAAGTC+TGG	0.428069	4_2:-70348884	None:intergenic
TTGAAAAGTACTTGTCATCA+AGG	0.430348	4_2:-70348631	None:intergenic
ACAGTGCTGATTCTTCTTGC+CGG	0.435264	4_2:+70347941	Msa0619230:CDS
CGAATTCTTTGAGTCAGATA+AGG	0.457015	4_2:+70348688	Msa0619230:CDS
AATAAATCTATGTAATGTAA+TGG	0.457278	4_2:-70347237	None:intergenic
GGCTTCTTCACATCATCAGC+AGG	0.465308	4_2:-70347537	None:intergenic
TGAAGACTTATCTTGGTGCC+AGG	0.466625	4_2:+70348891	Msa0619230:CDS
AAGAAGAATCAGCACTGTGC+CGG	0.476099	4_2:-70347936	None:intergenic
AACACCGGAGATATCGACTT+TGG	0.477360	4_2:-70348597	None:intergenic
TCAGTTCCATCTCAATAAGC+TGG	0.483444	4_2:-70349256	None:intergenic
ACCTGCCTTGAGAGAAAACC+TGG	0.493075	4_2:-70348909	None:intergenic
ATCAGGGTTTCGGCTAACCC+TGG	0.499591	4_2:-70347364	None:intergenic
TGGTCATCTTTCTTCTGCTG+AGG	0.501451	4_2:-70348818	None:intergenic
TCTTCTAGTTTGGAGGAAAG+AGG	0.510621	4_2:+70348951	Msa0619230:exon
ACTGTAATATGGAATTCTGC+TGG	0.512780	4_2:+70349038	Msa0619230:three_prime_UTR
AGAAGAATCAGCACTGTGCC+GGG	0.513749	4_2:-70347935	None:intergenic
CAATTCCTCTGATCAAATCA+GGG	0.517272	4_2:-70347380	None:intergenic
AGGAACTCCGTTGATCTTGA+AGG	0.517314	4_2:-70348534	None:intergenic
TTTGCATTTCGTAGCAGCAA+TGG	0.530175	4_2:+70347320	Msa0619230:exon
CGATATCTCCGGTGTTAATG+TGG	0.532682	4_2:+70348604	Msa0619230:CDS
GTGAATCAGGCCTATGTGAT+TGG	0.535696	4_2:+70348566	Msa0619230:CDS
CTGGGTGCTCTCTGCTTCGT+CGG	0.540977	4_2:-70347345	None:intergenic
TCACAGATGTATCACAAGAA+AGG	0.542107	4_2:+70347417	Msa0619230:CDS
ACTGACTCGGATAAAGGGGC+AGG	0.543645	4_2:-70349220	None:intergenic
TTCAGGGCAAGCATCACTCC+CGG	0.546234	4_2:+70347917	Msa0619230:intron
CCTCTTGCCCTTAAATCTAC+CGG	0.549567	4_2:-70347960	None:intergenic
GTATCACAAGAAAGGTATCT+GGG	0.554030	4_2:+70347425	Msa0619230:CDS
GAACTCGTCTTCTAGTTTGG+AGG	0.559347	4_2:+70348944	Msa0619230:exon
TAATAACCAGCTTATTGAGA+TGG	0.562966	4_2:+70349250	Msa0619230:three_prime_UTR
CTTCTAGTTTGGAGGAAAGA+GGG	0.566293	4_2:+70348952	Msa0619230:exon
GGCTTATGCTTGTTGCGAAG+AGG	0.566563	4_2:-70347558	None:intergenic
AGCCTAAGCAGACTAAGCTC+AGG	0.567914	4_2:+70347577	Msa0619230:CDS
TCAGGGTTTCGGCTAACCCT+GGG	0.568120	4_2:-70347363	None:intergenic
TCTATGTAATGTAATGGACC+CGG	0.568422	4_2:-70347231	None:intergenic
CGAAACCCTGATTTGATCAG+AGG	0.574541	4_2:+70347375	Msa0619230:CDS
CGGTAGATTTAAGGGCAAGA+GGG	0.577532	4_2:+70347961	Msa0619230:CDS
GCCTGATTCACACGTCTCAA+AGG	0.578175	4_2:-70348554	None:intergenic
GAGTATATATCAGTATTTCA+CGG	0.578413	4_2:-70349409	None:intergenic
TCAACCAAAGTCGATATCTC+CGG	0.580594	4_2:+70348593	Msa0619230:CDS
CCGGTAGATTTAAGGGCAAG+AGG	0.581183	4_2:+70347960	Msa0619230:CDS
ACAATAGCAAAATTGCATGA+AGG	0.581258	4_2:-70349068	None:intergenic
AACCTGAGCTTAGTCTGCTT+AGG	0.583716	4_2:-70347579	None:intergenic
CTTTCACTTGAGCATGCCAA+AGG	0.584843	4_2:+70349132	Msa0619230:three_prime_UTR
GGAACTCCGTTGATCTTGAA+GGG	0.585587	4_2:-70348533	None:intergenic
GGTTGATGTACCAATCACAT+AGG	0.591225	4_2:-70348576	None:intergenic
GACGAAGCAGAGAGCACCCA+GGG	0.611105	4_2:+70347347	Msa0619230:CDS
AACTAGAAGACGAGTTCGTG+TGG	0.615065	4_2:-70348938	None:intergenic
TCAGGTCCCTTCAAGATCAA+CGG	0.616664	4_2:+70348527	Msa0619230:intron
AAGATAGTCTCTGTGTTGTG+TGG	0.624196	4_2:-70347261	None:intergenic
AGACACTGACTCGGATAAAG+GGG	0.625328	4_2:-70349224	None:intergenic
ATTCTTTGAGTCAGATAAGG+AGG	0.630746	4_2:+70348691	Msa0619230:CDS
TAGATTTAAGGGCAAGAGGG+TGG	0.640763	4_2:+70347964	Msa0619230:CDS
GTTACAAGAAGCAATCCAGA+AGG	0.643198	4_2:-70348004	None:intergenic
CGACGAAGCAGAGAGCACCC+AGG	0.649766	4_2:+70347346	Msa0619230:CDS
CTATGTAATGTAATGGACCC+GGG	0.650162	4_2:-70347230	None:intergenic
GCTTCTTCACATCATCAGCA+GGG	0.669182	4_2:-70347536	None:intergenic
TTATTATCAAGACACTGACT+CGG	0.673999	4_2:-70349233	None:intergenic
AAGGTTATCCACATTAACAC+CGG	0.677708	4_2:-70348612	None:intergenic
TTAGGTTTAGGATCATGACG+AGG	0.681191	4_2:-70347477	None:intergenic
TAGGTTTAGGATCATGACGA+GGG	0.683516	4_2:-70347476	None:intergenic
GAAAGATGACCAGAAAACAG+TGG	0.686525	4_2:+70348829	Msa0619230:CDS
CTGACTCGGATAAAGGGGCA+GGG	0.687621	4_2:-70349219	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	GTGTTTTATAATTTTTTTAA+TGG	+	chr4_2:70348986-70349005	Msa0619230:three_prime_UTR	10.0%
!!!	GTGTTTTATAATTTTTTTAA+TGG	+	chr4_2:70348986-70349005	Msa0619230:three_prime_UTR	10.0%
!!	AATAAATCTATGTAATGTAA+TGG	-	chr4_2:70347240-70347259	None:intergenic	15.0%
!!!	TACATGATTTTGATATTATT+TGG	+	chr4_2:70347788-70347807	Msa0619230:intron	15.0%
!!!	ACATGATTTTGATATTATTT+GGG	+	chr4_2:70347789-70347808	Msa0619230:intron	15.0%
!!!	TATCATTTTTGTTAAGAAAA+AGG	-	chr4_2:70349191-70349210	None:intergenic	15.0%
!!	AATAAATCTATGTAATGTAA+TGG	-	chr4_2:70347240-70347259	None:intergenic	15.0%
!!!	TACATGATTTTGATATTATT+TGG	+	chr4_2:70347788-70347807	Msa0619230:intron	15.0%
!!!	ACATGATTTTGATATTATTT+GGG	+	chr4_2:70347789-70347808	Msa0619230:intron	15.0%
!!!	TATCATTTTTGTTAAGAAAA+AGG	-	chr4_2:70349191-70349210	None:intergenic	15.0%
!!!	CAGTTATTCTTATCATTTTA+CGG	+	chr4_2:70347626-70347645	Msa0619230:intron	20.0%
!!	AATATCAAAATCATGTACAA+AGG	-	chr4_2:70347785-70347804	None:intergenic	20.0%
!!!	TTTTGATATTATTTGGGATA+TGG	+	chr4_2:70347795-70347814	Msa0619230:intron	20.0%
!!	AAGATCAGAAATTTAATTGA+TGG	-	chr4_2:70348103-70348122	None:intergenic	20.0%
!!!	TCTTATTCTTTTTATGTACT+AGG	+	chr4_2:70348119-70348138	Msa0619230:intron	20.0%
!!!	TGTTTTTTATTTTTGATTGC+AGG	+	chr4_2:70348781-70348800	Msa0619230:intron	20.0%
!!!	TATGAATTTTAGTTATTGTG+AGG	+	chr4_2:70349109-70349128	Msa0619230:three_prime_UTR	20.0%
!!!	CAGTTATTCTTATCATTTTA+CGG	+	chr4_2:70347626-70347645	Msa0619230:intron	20.0%
!!	AATATCAAAATCATGTACAA+AGG	-	chr4_2:70347785-70347804	None:intergenic	20.0%
!!!	TTTTGATATTATTTGGGATA+TGG	+	chr4_2:70347795-70347814	Msa0619230:intron	20.0%
!!	AAGATCAGAAATTTAATTGA+TGG	-	chr4_2:70348103-70348122	None:intergenic	20.0%
!!!	TCTTATTCTTTTTATGTACT+AGG	+	chr4_2:70348119-70348138	Msa0619230:intron	20.0%
!!!	TGTTTTTTATTTTTGATTGC+AGG	+	chr4_2:70348781-70348800	Msa0619230:intron	20.0%
!!!	TATGAATTTTAGTTATTGTG+AGG	+	chr4_2:70349109-70349128	Msa0619230:three_prime_UTR	20.0%
!!!	CAACCAGTATTTGTTATTTT+AGG	+	chr4_2:70347754-70347773	Msa0619230:intron	25.0%
!	TCACCTAAAATAACAAATAC+TGG	-	chr4_2:70347760-70347779	None:intergenic	25.0%
!!!	TAATCACTTTTGTTTTGTGT+TGG	+	chr4_2:70347882-70347901	Msa0619230:intron	25.0%
!!!	AATCACTTTTGTTTTGTGTT+GGG	+	chr4_2:70347883-70347902	Msa0619230:intron	25.0%
!!!	ACTTTGATCATTTTTTCAAC+GGG	-	chr4_2:70349342-70349361	None:intergenic	25.0%
!!!	CACTTTGATCATTTTTTCAA+CGG	-	chr4_2:70349343-70349362	None:intergenic	25.0%
!!!	CAACCAGTATTTGTTATTTT+AGG	+	chr4_2:70347754-70347773	Msa0619230:intron	25.0%
!	TCACCTAAAATAACAAATAC+TGG	-	chr4_2:70347760-70347779	None:intergenic	25.0%
!!!	TAATCACTTTTGTTTTGTGT+TGG	+	chr4_2:70347882-70347901	Msa0619230:intron	25.0%
!!!	AATCACTTTTGTTTTGTGTT+GGG	+	chr4_2:70347883-70347902	Msa0619230:intron	25.0%
!!!	ACTTTGATCATTTTTTCAAC+GGG	-	chr4_2:70349342-70349361	None:intergenic	25.0%
!!!	CACTTTGATCATTTTTTCAA+CGG	-	chr4_2:70349343-70349362	None:intergenic	25.0%
	ACAGTGTTCTTTGTGTTAAT+TGG	+	chr4_2:70347696-70347715	Msa0619230:intron	30.0%
	CAGTGTTCTTTGTGTTAATT+GGG	+	chr4_2:70347697-70347716	Msa0619230:intron	30.0%
	TTTGTGTTAATTGGGATTAC+TGG	+	chr4_2:70347705-70347724	Msa0619230:intron	30.0%
	TTTGTTGCTCTTGATTGATA+AGG	+	chr4_2:70348049-70348068	Msa0619230:intron	30.0%
	AGAAATGTTGACGAGATATA+AGG	+	chr4_2:70348153-70348172	Msa0619230:intron	30.0%
	GAAATGTTGACGAGATATAA+GGG	+	chr4_2:70348154-70348173	Msa0619230:intron	30.0%
!!	CATAAGTTTTGTCACTGTTT+GGG	-	chr4_2:70348331-70348350	None:intergenic	30.0%
!!	ACATAAGTTTTGTCACTGTT+TGG	-	chr4_2:70348332-70348351	None:intergenic	30.0%
	TATTCAATGTTGACATCAGT+TGG	-	chr4_2:70348426-70348445	None:intergenic	30.0%
	GATGTCAACATTGAATATCA+TGG	+	chr4_2:70348429-70348448	Msa0619230:intron	30.0%
!	TTTTTCTTACTTTGCATCTC+AGG	+	chr4_2:70348509-70348528	Msa0619230:intron	30.0%
!!	TTGAAAAGTACTTGTCATCA+AGG	-	chr4_2:70348634-70348653	None:intergenic	30.0%
!	TGATGACAAGTACTTTTCAA+AGG	+	chr4_2:70348634-70348653	Msa0619230:CDS	30.0%
!!	TTTTTGATTGCAGGAGAAAA+AGG	+	chr4_2:70348790-70348809	Msa0619230:intron	30.0%
	GCACTTTCTTAACTGTAATA+TGG	+	chr4_2:70349027-70349046	Msa0619230:three_prime_UTR	30.0%
	ACAATAGCAAAATTGCATGA+AGG	-	chr4_2:70349071-70349090	None:intergenic	30.0%
!	TTATTATCAAGACACTGACT+CGG	-	chr4_2:70349236-70349255	None:intergenic	30.0%
	TAATAACCAGCTTATTGAGA+TGG	+	chr4_2:70349250-70349269	Msa0619230:three_prime_UTR	30.0%
	GAAAAATTCTTAATGCGAGA+TGG	+	chr4_2:70349280-70349299	Msa0619230:three_prime_UTR	30.0%
	ACAGTGTTCTTTGTGTTAAT+TGG	+	chr4_2:70347696-70347715	Msa0619230:intron	30.0%
	CAGTGTTCTTTGTGTTAATT+GGG	+	chr4_2:70347697-70347716	Msa0619230:intron	30.0%
	TTTGTGTTAATTGGGATTAC+TGG	+	chr4_2:70347705-70347724	Msa0619230:intron	30.0%
	TTTGTTGCTCTTGATTGATA+AGG	+	chr4_2:70348049-70348068	Msa0619230:intron	30.0%
	AGAAATGTTGACGAGATATA+AGG	+	chr4_2:70348153-70348172	Msa0619230:intron	30.0%
	GAAATGTTGACGAGATATAA+GGG	+	chr4_2:70348154-70348173	Msa0619230:intron	30.0%
!!	CATAAGTTTTGTCACTGTTT+GGG	-	chr4_2:70348331-70348350	None:intergenic	30.0%
!!	ACATAAGTTTTGTCACTGTT+TGG	-	chr4_2:70348332-70348351	None:intergenic	30.0%
	TATTCAATGTTGACATCAGT+TGG	-	chr4_2:70348426-70348445	None:intergenic	30.0%
	GATGTCAACATTGAATATCA+TGG	+	chr4_2:70348429-70348448	Msa0619230:intron	30.0%
!	TTTTTCTTACTTTGCATCTC+AGG	+	chr4_2:70348509-70348528	Msa0619230:intron	30.0%
!!	TTGAAAAGTACTTGTCATCA+AGG	-	chr4_2:70348634-70348653	None:intergenic	30.0%
!	TGATGACAAGTACTTTTCAA+AGG	+	chr4_2:70348634-70348653	Msa0619230:CDS	30.0%
!!	TTTTTGATTGCAGGAGAAAA+AGG	+	chr4_2:70348790-70348809	Msa0619230:intron	30.0%
	GCACTTTCTTAACTGTAATA+TGG	+	chr4_2:70349027-70349046	Msa0619230:three_prime_UTR	30.0%
	ACAATAGCAAAATTGCATGA+AGG	-	chr4_2:70349071-70349090	None:intergenic	30.0%
!	TTATTATCAAGACACTGACT+CGG	-	chr4_2:70349236-70349255	None:intergenic	30.0%
	TAATAACCAGCTTATTGAGA+TGG	+	chr4_2:70349250-70349269	Msa0619230:three_prime_UTR	30.0%
	GAAAAATTCTTAATGCGAGA+TGG	+	chr4_2:70349280-70349299	Msa0619230:three_prime_UTR	30.0%
!!	TCTATGTAATGTAATGGACC+CGG	-	chr4_2:70347234-70347253	None:intergenic	35.0%
	TTGCACAGACAGAAAAAACT+AGG	+	chr4_2:70347296-70347315	Msa0619230:five_prime_UTR	35.0%
	TGCACAGACAGAAAAAACTA+GGG	+	chr4_2:70347297-70347316	Msa0619230:five_prime_UTR	35.0%
	CAATTCCTCTGATCAAATCA+GGG	-	chr4_2:70347383-70347402	None:intergenic	35.0%
	TCACAGATGTATCACAAGAA+AGG	+	chr4_2:70347417-70347436	Msa0619230:CDS	35.0%
!!	TGTATCACAAGAAAGGTATC+TGG	+	chr4_2:70347424-70347443	Msa0619230:CDS	35.0%
!!	GTATCACAAGAAAGGTATCT+GGG	+	chr4_2:70347425-70347444	Msa0619230:CDS	35.0%
!!	TGGTTTTTCAACAGCAGTTT+CGG	-	chr4_2:70347505-70347524	None:intergenic	35.0%
!	TCATCAGCAGGGTAAAATTT+TGG	-	chr4_2:70347528-70347547	None:intergenic	35.0%
!!!	TTGGGTCTTTTTTGTCTTCA+GGG	+	chr4_2:70347901-70347920	Msa0619230:intron	35.0%
	AAGGTTATCCACATTAACAC+CGG	-	chr4_2:70348615-70348634	None:intergenic	35.0%
	CGAATTCTTTGAGTCAGATA+AGG	+	chr4_2:70348688-70348707	Msa0619230:CDS	35.0%
	ATTCTTTGAGTCAGATAAGG+AGG	+	chr4_2:70348691-70348710	Msa0619230:CDS	35.0%
	ACTGTAATATGGAATTCTGC+TGG	+	chr4_2:70349038-70349057	Msa0619230:three_prime_UTR	35.0%
!	AGCATGCCAAAGGAAAATTT+TGG	+	chr4_2:70349142-70349161	Msa0619230:three_prime_UTR	35.0%
!	CTGTCTCCAAAATTTTCCTT+TGG	-	chr4_2:70349151-70349170	None:intergenic	35.0%
!	GATGGAACTTGAAGTATTTC+AGG	+	chr4_2:70349298-70349317	Msa0619230:three_prime_UTR	35.0%
	TTTCAACGGGTACACATAAT+AGG	-	chr4_2:70349329-70349348	None:intergenic	35.0%
!!	TCTATGTAATGTAATGGACC+CGG	-	chr4_2:70347234-70347253	None:intergenic	35.0%
	TTGCACAGACAGAAAAAACT+AGG	+	chr4_2:70347296-70347315	Msa0619230:five_prime_UTR	35.0%
	TGCACAGACAGAAAAAACTA+GGG	+	chr4_2:70347297-70347316	Msa0619230:five_prime_UTR	35.0%
	CAATTCCTCTGATCAAATCA+GGG	-	chr4_2:70347383-70347402	None:intergenic	35.0%
	TCACAGATGTATCACAAGAA+AGG	+	chr4_2:70347417-70347436	Msa0619230:CDS	35.0%
!!	TGTATCACAAGAAAGGTATC+TGG	+	chr4_2:70347424-70347443	Msa0619230:CDS	35.0%
!!	GTATCACAAGAAAGGTATCT+GGG	+	chr4_2:70347425-70347444	Msa0619230:CDS	35.0%
!!	TGGTTTTTCAACAGCAGTTT+CGG	-	chr4_2:70347505-70347524	None:intergenic	35.0%
!	TCATCAGCAGGGTAAAATTT+TGG	-	chr4_2:70347528-70347547	None:intergenic	35.0%
!!!	TTGGGTCTTTTTTGTCTTCA+GGG	+	chr4_2:70347901-70347920	Msa0619230:intron	35.0%
	AAGGTTATCCACATTAACAC+CGG	-	chr4_2:70348615-70348634	None:intergenic	35.0%
	CGAATTCTTTGAGTCAGATA+AGG	+	chr4_2:70348688-70348707	Msa0619230:CDS	35.0%
	ATTCTTTGAGTCAGATAAGG+AGG	+	chr4_2:70348691-70348710	Msa0619230:CDS	35.0%
	ACTGTAATATGGAATTCTGC+TGG	+	chr4_2:70349038-70349057	Msa0619230:three_prime_UTR	35.0%
!	AGCATGCCAAAGGAAAATTT+TGG	+	chr4_2:70349142-70349161	Msa0619230:three_prime_UTR	35.0%
!	CTGTCTCCAAAATTTTCCTT+TGG	-	chr4_2:70349151-70349170	None:intergenic	35.0%
!	GATGGAACTTGAAGTATTTC+AGG	+	chr4_2:70349298-70349317	Msa0619230:three_prime_UTR	35.0%
	TTTCAACGGGTACACATAAT+AGG	-	chr4_2:70349329-70349348	None:intergenic	35.0%
!!	CTATGTAATGTAATGGACCC+GGG	-	chr4_2:70347233-70347252	None:intergenic	40.0%
	AAGATAGTCTCTGTGTTGTG+TGG	-	chr4_2:70347264-70347283	None:intergenic	40.0%
	TTTGCATTTCGTAGCAGCAA+TGG	+	chr4_2:70347320-70347339	Msa0619230:exon	40.0%
	CTCTGATCAAATCAGGGTTT+CGG	-	chr4_2:70347377-70347396	None:intergenic	40.0%
	CCAATTCCTCTGATCAAATC+AGG	-	chr4_2:70347384-70347403	None:intergenic	40.0%
!	CCTGATTTGATCAGAGGAAT+TGG	+	chr4_2:70347381-70347400	Msa0619230:CDS	40.0%
!!	GAAAGGTATCTGGGCTATTA+AGG	+	chr4_2:70347434-70347453	Msa0619230:CDS	40.0%
	TGGGCTATTAAGGCCAAAAA+TGG	+	chr4_2:70347444-70347463	Msa0619230:CDS	40.0%
	GCTATTAAGGCCAAAAATGG+TGG	+	chr4_2:70347447-70347466	Msa0619230:CDS	40.0%
!	TAGGTTTAGGATCATGACGA+GGG	-	chr4_2:70347479-70347498	None:intergenic	40.0%
!	TTAGGTTTAGGATCATGACG+AGG	-	chr4_2:70347480-70347499	None:intergenic	40.0%
!!	GGTTTTTCAACAGCAGTTTC+GGG	-	chr4_2:70347504-70347523	None:intergenic	40.0%
!	TCAGCAGGGTAAAATTTTGG+TGG	-	chr4_2:70347525-70347544	None:intergenic	40.0%
!!!	GTTGGGTCTTTTTTGTCTTC+AGG	+	chr4_2:70347900-70347919	Msa0619230:intron	40.0%
	TCTTCTTGCCGGTAGATTTA+AGG	+	chr4_2:70347952-70347971	Msa0619230:CDS	40.0%
	CTTCTTGCCGGTAGATTTAA+GGG	+	chr4_2:70347953-70347972	Msa0619230:CDS	40.0%
!!!	TTTTTGAAGCAGCTTCCTTC+TGG	+	chr4_2:70347989-70348008	Msa0619230:CDS	40.0%
	GTTACAAGAAGCAATCCAGA+AGG	-	chr4_2:70348007-70348026	None:intergenic	40.0%
	TCTGGATTGCTTCTTGTAAC+TGG	+	chr4_2:70348007-70348026	Msa0619230:CDS	40.0%
!	GGTTGATGTACCAATCACAT+AGG	-	chr4_2:70348579-70348598	None:intergenic	40.0%
	TCAACCAAAGTCGATATCTC+CGG	+	chr4_2:70348593-70348612	Msa0619230:CDS	40.0%
!!!	TCCCTTGCTCTTCTTTTTTG+GGG	-	chr4_2:70348663-70348682	None:intergenic	40.0%
!!!	CTCCCTTGCTCTTCTTTTTT+GGG	-	chr4_2:70348664-70348683	None:intergenic	40.0%
!!!	TCTCCCTTGCTCTTCTTTTT+TGG	-	chr4_2:70348665-70348684	None:intergenic	40.0%
	AAAAAGAAGAGCAAGGGAGA+AGG	+	chr4_2:70348665-70348684	Msa0619230:CDS	40.0%
	GTTATGCTCATTGCTTCTGT+TGG	+	chr4_2:70348752-70348771	Msa0619230:intron	40.0%
	GAAAGATGACCAGAAAACAG+TGG	+	chr4_2:70348829-70348848	Msa0619230:CDS	40.0%
	CCAAGATAAGTCTTCAAGTC+TGG	-	chr4_2:70348887-70348906	None:intergenic	40.0%
	CCAGACTTGAAGACTTATCT+TGG	+	chr4_2:70348884-70348903	Msa0619230:CDS	40.0%
!!	TCTTCTAGTTTGGAGGAAAG+AGG	+	chr4_2:70348951-70348970	Msa0619230:exon	40.0%
!!	CTTCTAGTTTGGAGGAAAGA+GGG	+	chr4_2:70348952-70348971	Msa0619230:exon	40.0%
!!	AAGACACTGACTCGGATAAA+GGG	-	chr4_2:70349228-70349247	None:intergenic	40.0%
	TCAGTTCCATCTCAATAAGC+TGG	-	chr4_2:70349259-70349278	None:intergenic	40.0%
!!	CTATGTAATGTAATGGACCC+GGG	-	chr4_2:70347233-70347252	None:intergenic	40.0%
	AAGATAGTCTCTGTGTTGTG+TGG	-	chr4_2:70347264-70347283	None:intergenic	40.0%
	TTTGCATTTCGTAGCAGCAA+TGG	+	chr4_2:70347320-70347339	Msa0619230:exon	40.0%
	CTCTGATCAAATCAGGGTTT+CGG	-	chr4_2:70347377-70347396	None:intergenic	40.0%
	CCAATTCCTCTGATCAAATC+AGG	-	chr4_2:70347384-70347403	None:intergenic	40.0%
!	CCTGATTTGATCAGAGGAAT+TGG	+	chr4_2:70347381-70347400	Msa0619230:CDS	40.0%
!!	GAAAGGTATCTGGGCTATTA+AGG	+	chr4_2:70347434-70347453	Msa0619230:CDS	40.0%
	TGGGCTATTAAGGCCAAAAA+TGG	+	chr4_2:70347444-70347463	Msa0619230:CDS	40.0%
	GCTATTAAGGCCAAAAATGG+TGG	+	chr4_2:70347447-70347466	Msa0619230:CDS	40.0%
!	TAGGTTTAGGATCATGACGA+GGG	-	chr4_2:70347479-70347498	None:intergenic	40.0%
!	TTAGGTTTAGGATCATGACG+AGG	-	chr4_2:70347480-70347499	None:intergenic	40.0%
!!	GGTTTTTCAACAGCAGTTTC+GGG	-	chr4_2:70347504-70347523	None:intergenic	40.0%
!	TCAGCAGGGTAAAATTTTGG+TGG	-	chr4_2:70347525-70347544	None:intergenic	40.0%
!!!	GTTGGGTCTTTTTTGTCTTC+AGG	+	chr4_2:70347900-70347919	Msa0619230:intron	40.0%
	TCTTCTTGCCGGTAGATTTA+AGG	+	chr4_2:70347952-70347971	Msa0619230:CDS	40.0%
	CTTCTTGCCGGTAGATTTAA+GGG	+	chr4_2:70347953-70347972	Msa0619230:CDS	40.0%
!!!	TTTTTGAAGCAGCTTCCTTC+TGG	+	chr4_2:70347989-70348008	Msa0619230:CDS	40.0%
	GTTACAAGAAGCAATCCAGA+AGG	-	chr4_2:70348007-70348026	None:intergenic	40.0%
	TCTGGATTGCTTCTTGTAAC+TGG	+	chr4_2:70348007-70348026	Msa0619230:CDS	40.0%
!	GGTTGATGTACCAATCACAT+AGG	-	chr4_2:70348579-70348598	None:intergenic	40.0%
	TCAACCAAAGTCGATATCTC+CGG	+	chr4_2:70348593-70348612	Msa0619230:CDS	40.0%
!!!	TCCCTTGCTCTTCTTTTTTG+GGG	-	chr4_2:70348663-70348682	None:intergenic	40.0%
!!!	CTCCCTTGCTCTTCTTTTTT+GGG	-	chr4_2:70348664-70348683	None:intergenic	40.0%
!!!	TCTCCCTTGCTCTTCTTTTT+TGG	-	chr4_2:70348665-70348684	None:intergenic	40.0%
	AAAAAGAAGAGCAAGGGAGA+AGG	+	chr4_2:70348665-70348684	Msa0619230:CDS	40.0%
	GTTATGCTCATTGCTTCTGT+TGG	+	chr4_2:70348752-70348771	Msa0619230:intron	40.0%
	GAAAGATGACCAGAAAACAG+TGG	+	chr4_2:70348829-70348848	Msa0619230:CDS	40.0%
	CCAAGATAAGTCTTCAAGTC+TGG	-	chr4_2:70348887-70348906	None:intergenic	40.0%
	CCAGACTTGAAGACTTATCT+TGG	+	chr4_2:70348884-70348903	Msa0619230:CDS	40.0%
!!	TCTTCTAGTTTGGAGGAAAG+AGG	+	chr4_2:70348951-70348970	Msa0619230:exon	40.0%
!!	CTTCTAGTTTGGAGGAAAGA+GGG	+	chr4_2:70348952-70348971	Msa0619230:exon	40.0%
!!	AAGACACTGACTCGGATAAA+GGG	-	chr4_2:70349228-70349247	None:intergenic	40.0%
	TCAGTTCCATCTCAATAAGC+TGG	-	chr4_2:70349259-70349278	None:intergenic	40.0%
!	CGAAACCCTGATTTGATCAG+AGG	+	chr4_2:70347375-70347394	Msa0619230:CDS	45.0%
!	AGGGAAAACGCCACCATTTT+TGG	-	chr4_2:70347460-70347479	None:intergenic	45.0%
	GCTTCTTCACATCATCAGCA+GGG	-	chr4_2:70347539-70347558	None:intergenic	45.0%
	AACCTGAGCTTAGTCTGCTT+AGG	-	chr4_2:70347582-70347601	None:intergenic	45.0%
	AAGAAGAATCAGCACTGTGC+CGG	-	chr4_2:70347939-70347958	None:intergenic	45.0%
!!	ACAGTGCTGATTCTTCTTGC+CGG	+	chr4_2:70347941-70347960	Msa0619230:CDS	45.0%
	CCTCTTGCCCTTAAATCTAC+CGG	-	chr4_2:70347963-70347982	None:intergenic	45.0%
	CGGTAGATTTAAGGGCAAGA+GGG	+	chr4_2:70347961-70347980	Msa0619230:CDS	45.0%
	TAGATTTAAGGGCAAGAGGG+TGG	+	chr4_2:70347964-70347983	Msa0619230:CDS	45.0%
	TTAACAGGCACCACTTGTCT+TGG	+	chr4_2:70348471-70348490	Msa0619230:intron	45.0%
	TGAAGAGAAGCCAAGACAAG+TGG	-	chr4_2:70348484-70348503	None:intergenic	45.0%
	TCAGGTCCCTTCAAGATCAA+CGG	+	chr4_2:70348527-70348546	Msa0619230:intron	45.0%
	GGAACTCCGTTGATCTTGAA+GGG	-	chr4_2:70348536-70348555	None:intergenic	45.0%
	AGGAACTCCGTTGATCTTGA+AGG	-	chr4_2:70348537-70348556	None:intergenic	45.0%
!!	TCCTTTGAGACGTGTGAATC+AGG	+	chr4_2:70348553-70348572	Msa0619230:CDS	45.0%
	GTGAATCAGGCCTATGTGAT+TGG	+	chr4_2:70348566-70348585	Msa0619230:CDS	45.0%
!!	AACACCGGAGATATCGACTT+TGG	-	chr4_2:70348600-70348619	None:intergenic	45.0%
!	CGATATCTCCGGTGTTAATG+TGG	+	chr4_2:70348604-70348623	Msa0619230:CDS	45.0%
	AGCCCCAAAAAAGAAGAGCA+AGG	+	chr4_2:70348658-70348677	Msa0619230:CDS	45.0%
	GCCCCAAAAAAGAAGAGCAA+GGG	+	chr4_2:70348659-70348678	Msa0619230:CDS	45.0%
	TGGTCATCTTTCTTCTGCTG+AGG	-	chr4_2:70348821-70348840	None:intergenic	45.0%
!!	TGAAGACTTATCTTGGTGCC+AGG	+	chr4_2:70348891-70348910	Msa0619230:CDS	45.0%
	AACTAGAAGACGAGTTCGTG+TGG	-	chr4_2:70348941-70348960	None:intergenic	45.0%
!	CACGAACTCGTCTTCTAGTT+TGG	+	chr4_2:70348941-70348960	Msa0619230:exon	45.0%
!!	GAACTCGTCTTCTAGTTTGG+AGG	+	chr4_2:70348944-70348963	Msa0619230:exon	45.0%
	CTTTCACTTGAGCATGCCAA+AGG	+	chr4_2:70349132-70349151	Msa0619230:three_prime_UTR	45.0%
!!	AGACACTGACTCGGATAAAG+GGG	-	chr4_2:70349227-70349246	None:intergenic	45.0%
!!	CAAGACACTGACTCGGATAA+AGG	-	chr4_2:70349229-70349248	None:intergenic	45.0%
!	CGAAACCCTGATTTGATCAG+AGG	+	chr4_2:70347375-70347394	Msa0619230:CDS	45.0%
!	AGGGAAAACGCCACCATTTT+TGG	-	chr4_2:70347460-70347479	None:intergenic	45.0%
	GCTTCTTCACATCATCAGCA+GGG	-	chr4_2:70347539-70347558	None:intergenic	45.0%
	AACCTGAGCTTAGTCTGCTT+AGG	-	chr4_2:70347582-70347601	None:intergenic	45.0%
	AAGAAGAATCAGCACTGTGC+CGG	-	chr4_2:70347939-70347958	None:intergenic	45.0%
!!	ACAGTGCTGATTCTTCTTGC+CGG	+	chr4_2:70347941-70347960	Msa0619230:CDS	45.0%
	CCTCTTGCCCTTAAATCTAC+CGG	-	chr4_2:70347963-70347982	None:intergenic	45.0%
	CGGTAGATTTAAGGGCAAGA+GGG	+	chr4_2:70347961-70347980	Msa0619230:CDS	45.0%
	TAGATTTAAGGGCAAGAGGG+TGG	+	chr4_2:70347964-70347983	Msa0619230:CDS	45.0%
	TTAACAGGCACCACTTGTCT+TGG	+	chr4_2:70348471-70348490	Msa0619230:intron	45.0%
	TGAAGAGAAGCCAAGACAAG+TGG	-	chr4_2:70348484-70348503	None:intergenic	45.0%
	TCAGGTCCCTTCAAGATCAA+CGG	+	chr4_2:70348527-70348546	Msa0619230:intron	45.0%
	GGAACTCCGTTGATCTTGAA+GGG	-	chr4_2:70348536-70348555	None:intergenic	45.0%
	AGGAACTCCGTTGATCTTGA+AGG	-	chr4_2:70348537-70348556	None:intergenic	45.0%
!!	TCCTTTGAGACGTGTGAATC+AGG	+	chr4_2:70348553-70348572	Msa0619230:CDS	45.0%
	GTGAATCAGGCCTATGTGAT+TGG	+	chr4_2:70348566-70348585	Msa0619230:CDS	45.0%
!!	AACACCGGAGATATCGACTT+TGG	-	chr4_2:70348600-70348619	None:intergenic	45.0%
!	CGATATCTCCGGTGTTAATG+TGG	+	chr4_2:70348604-70348623	Msa0619230:CDS	45.0%
	AGCCCCAAAAAAGAAGAGCA+AGG	+	chr4_2:70348658-70348677	Msa0619230:CDS	45.0%
	GCCCCAAAAAAGAAGAGCAA+GGG	+	chr4_2:70348659-70348678	Msa0619230:CDS	45.0%
	TGGTCATCTTTCTTCTGCTG+AGG	-	chr4_2:70348821-70348840	None:intergenic	45.0%
!!	TGAAGACTTATCTTGGTGCC+AGG	+	chr4_2:70348891-70348910	Msa0619230:CDS	45.0%
	AACTAGAAGACGAGTTCGTG+TGG	-	chr4_2:70348941-70348960	None:intergenic	45.0%
!	CACGAACTCGTCTTCTAGTT+TGG	+	chr4_2:70348941-70348960	Msa0619230:exon	45.0%
!!	GAACTCGTCTTCTAGTTTGG+AGG	+	chr4_2:70348944-70348963	Msa0619230:exon	45.0%
	CTTTCACTTGAGCATGCCAA+AGG	+	chr4_2:70349132-70349151	Msa0619230:three_prime_UTR	45.0%
!!	AGACACTGACTCGGATAAAG+GGG	-	chr4_2:70349227-70349246	None:intergenic	45.0%
!!	CAAGACACTGACTCGGATAA+AGG	-	chr4_2:70349229-70349248	None:intergenic	45.0%
!!	TGTTAAAAAAAAAAAAAAAA+AGG	-	chr4_2:70348457-70348476	None:intergenic	5.0%
!!!	TTTTTTTTTTTTTTTTTAAC+AGG	+	chr4_2:70348456-70348475	Msa0619230:intron	5.0%
!!	TGTTAAAAAAAAAAAAAAAA+AGG	-	chr4_2:70348457-70348476	None:intergenic	5.0%
!!!	TTTTTTTTTTTTTTTTTAAC+AGG	+	chr4_2:70348456-70348475	Msa0619230:intron	5.0%
	GCAGTTTCGGGCTTAGGTTT+AGG	-	chr4_2:70347492-70347511	None:intergenic	50.0%
	TCAACAGCAGTTTCGGGCTT+AGG	-	chr4_2:70347498-70347517	None:intergenic	50.0%
	GGCTTCTTCACATCATCAGC+AGG	-	chr4_2:70347540-70347559	None:intergenic	50.0%
!	GGCTTATGCTTGTTGCGAAG+AGG	-	chr4_2:70347561-70347580	None:intergenic	50.0%
	AGCCTAAGCAGACTAAGCTC+AGG	+	chr4_2:70347577-70347596	Msa0619230:CDS	50.0%
	AGAAGAATCAGCACTGTGCC+GGG	-	chr4_2:70347938-70347957	None:intergenic	50.0%
	CCGGTAGATTTAAGGGCAAG+AGG	+	chr4_2:70347960-70347979	Msa0619230:CDS	50.0%
	GCCTGATTCACACGTCTCAA+AGG	-	chr4_2:70348557-70348576	None:intergenic	50.0%
!	ATGCAGCGTCCACTGTTTTC+TGG	-	chr4_2:70348841-70348860	None:intergenic	50.0%
!!	TGGTGCCAGGTTTTCTCTCA+AGG	+	chr4_2:70348904-70348923	Msa0619230:CDS	50.0%
	ACCTGCCTTGAGAGAAAACC+TGG	-	chr4_2:70348912-70348931	None:intergenic	50.0%
	GCAGTTTCGGGCTTAGGTTT+AGG	-	chr4_2:70347492-70347511	None:intergenic	50.0%
	TCAACAGCAGTTTCGGGCTT+AGG	-	chr4_2:70347498-70347517	None:intergenic	50.0%
	GGCTTCTTCACATCATCAGC+AGG	-	chr4_2:70347540-70347559	None:intergenic	50.0%
!	GGCTTATGCTTGTTGCGAAG+AGG	-	chr4_2:70347561-70347580	None:intergenic	50.0%
	AGCCTAAGCAGACTAAGCTC+AGG	+	chr4_2:70347577-70347596	Msa0619230:CDS	50.0%
	AGAAGAATCAGCACTGTGCC+GGG	-	chr4_2:70347938-70347957	None:intergenic	50.0%
	CCGGTAGATTTAAGGGCAAG+AGG	+	chr4_2:70347960-70347979	Msa0619230:CDS	50.0%
	GCCTGATTCACACGTCTCAA+AGG	-	chr4_2:70348557-70348576	None:intergenic	50.0%
!	ATGCAGCGTCCACTGTTTTC+TGG	-	chr4_2:70348841-70348860	None:intergenic	50.0%
!!	TGGTGCCAGGTTTTCTCTCA+AGG	+	chr4_2:70348904-70348923	Msa0619230:CDS	50.0%
	ACCTGCCTTGAGAGAAAACC+TGG	-	chr4_2:70348912-70348931	None:intergenic	50.0%
	TCAGGGTTTCGGCTAACCCT+GGG	-	chr4_2:70347366-70347385	None:intergenic	55.0%
	ATCAGGGTTTCGGCTAACCC+TGG	-	chr4_2:70347367-70347386	None:intergenic	55.0%
	TTCAGGGCAAGCATCACTCC+CGG	+	chr4_2:70347917-70347936	Msa0619230:intron	55.0%
!	GCCAGGTTTTCTCTCAAGGC+AGG	+	chr4_2:70348908-70348927	Msa0619230:CDS	55.0%
!!	CTGACTCGGATAAAGGGGCA+GGG	-	chr4_2:70349222-70349241	None:intergenic	55.0%
!!	ACTGACTCGGATAAAGGGGC+AGG	-	chr4_2:70349223-70349242	None:intergenic	55.0%
	TCAGGGTTTCGGCTAACCCT+GGG	-	chr4_2:70347366-70347385	None:intergenic	55.0%
	ATCAGGGTTTCGGCTAACCC+TGG	-	chr4_2:70347367-70347386	None:intergenic	55.0%
	TTCAGGGCAAGCATCACTCC+CGG	+	chr4_2:70347917-70347936	Msa0619230:intron	55.0%
!	GCCAGGTTTTCTCTCAAGGC+AGG	+	chr4_2:70348908-70348927	Msa0619230:CDS	55.0%
!!	CTGACTCGGATAAAGGGGCA+GGG	-	chr4_2:70349222-70349241	None:intergenic	55.0%
!!	ACTGACTCGGATAAAGGGGC+AGG	-	chr4_2:70349223-70349242	None:intergenic	55.0%
	CTGGGTGCTCTCTGCTTCGT+CGG	-	chr4_2:70347348-70347367	None:intergenic	60.0%
!!	GACGAAGCAGAGAGCACCCA+GGG	+	chr4_2:70347347-70347366	Msa0619230:CDS	60.0%
	CTGGGTGCTCTCTGCTTCGT+CGG	-	chr4_2:70347348-70347367	None:intergenic	60.0%
!!	GACGAAGCAGAGAGCACCCA+GGG	+	chr4_2:70347347-70347366	Msa0619230:CDS	60.0%
!!	CGACGAAGCAGAGAGCACCC+AGG	+	chr4_2:70347346-70347365	Msa0619230:CDS	65.0%
!!	CGACGAAGCAGAGAGCACCC+AGG	+	chr4_2:70347346-70347365	Msa0619230:CDS	65.0%

Chromosome	Type	Strat	End	Strand	Name
chr4_2	gene	70347230	70349428	70347230	ID=Msa0619230;Name=Msa0619230
chr4_2	mRNA	70347230	70349428	70347230	ID=Msa0619230-mRNA-1;Parent=Msa0619230;Name=Msa0619230-mRNA-1;_AED=0.05;_eAED=0.05;_QI=109\|1\|1\|1\|1\|1\|4\|470\|234
chr4_2	exon	70347230	70347598	70347230	ID=Msa0619230-mRNA-1:exon:20455;Parent=Msa0619230-mRNA-1
chr4_2	exon	70347922	70348028	70347922	ID=Msa0619230-mRNA-1:exon:20456;Parent=Msa0619230-mRNA-1
chr4_2	exon	70348531	70348712	70348531	ID=Msa0619230-mRNA-1:exon:20457;Parent=Msa0619230-mRNA-1
chr4_2	exon	70348803	70349428	70348803	ID=Msa0619230-mRNA-1:exon:20458;Parent=Msa0619230-mRNA-1
chr4_2	five_prime_UTR	70347230	70347338	70347230	ID=Msa0619230-mRNA-1:five_prime_utr;Parent=Msa0619230-mRNA-1
chr4_2	CDS	70347339	70347598	70347339	ID=Msa0619230-mRNA-1:cds;Parent=Msa0619230-mRNA-1
chr4_2	CDS	70347922	70348028	70347922	ID=Msa0619230-mRNA-1:cds;Parent=Msa0619230-mRNA-1
chr4_2	CDS	70348531	70348712	70348531	ID=Msa0619230-mRNA-1:cds;Parent=Msa0619230-mRNA-1
chr4_2	CDS	70348803	70348958	70348803	ID=Msa0619230-mRNA-1:cds;Parent=Msa0619230-mRNA-1
chr4_2	three_prime_UTR	70348959	70349428	70348959	ID=Msa0619230-mRNA-1:three_prime_utr;Parent=Msa0619230-mRNA-1

Gene Sequence

>Msa0619230

ATGGCGCCGACGAAGCAGAGAGCACCCAGGGTTAGCCGAAACCCTGATTTGATCAGAGGAATTGGAAAGTTCTCAAAGTCACAGATGTATCACAAGAAAGGTATCTGGGCTATTAAGGCCAAAAATGGTGGCGTTTTCCCTCGTCATGATCCTAAACCTAAGCCCGAAACTGCTGTTGAAAAACCACCAAAATTTTACCCTGCTGATGATGTGAAGAAGCCTCTTCGCAACAAGCATAAGCCTAAGCAGACTAAGCTCAGGGCAAGCATCACTCCCGGCACAGTGCTGATTCTTCTTGCCGGTAGATTTAAGGGCAAGAGGGTGGTGTTTTTGAAGCAGCTTCCTTCTGGATTGCTTCTTGTAACTGGTCCCTTCAAGATCAACGGAGTTCCTTTGAGACGTGTGAATCAGGCCTATGTGATTGGTACATCAACCAAAGTCGATATCTCCGGTGTTAATGTGGATAACCTTGATGACAAGTACTTTTCAAAGGAAGCCCCAAAAAAGAAGAGCAAGGGAGAAGGCGAATTCTTTGAGTCAGATAAGGAGGAGAAAAAGGCGTTACCTCAGCAGAAGAAAGATGACCAGAAAACAGTGGACGCTGCATTGATAAAAGCTATTGAGAGCGTTCCAGACTTGAAGACTTATCTTGGTGCCAGGTTTTCTCTCAAGGCAGGTGTGAAGCCACACGAACTCGTCTTCTAG

Protein sequence

>Msa0619230

MAPTKQRAPRVSRNPDLIRGIGKFSKSQMYHKKGIWAIKAKNGGVFPRHDPKPKPETAVEKPPKFYPADDVKKPLRNKHKPKQTKLRASITPGTVLILLAGRFKGKRVVFLKQLPSGLLLVTGPFKINGVPLRRVNQAYVIGTSTKVDISGVNVDNLDDKYFSKEAPKKKSKGEGEFFESDKEEKKALPQQKKDDQKTVDAALIKAIESVPDLKTYLGARFSLKAGVKPHELVF*