Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0346360 | XP_013458796.1 | 95.610 | 205 | 8 | 1 | 9 | 213 | 1 | 204 | 2.33e-140 | 400 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0346360 | A0A072UUU4 | 95.610 | 205 | 8 | 1 | 9 | 213 | 1 | 204 | 1.12e-140 | 400 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006000 | Msa0346360 | 0.803014 | 4.266588e-49 | -8.615850e-47 |
| Msa0012040 | Msa0346360 | 0.800523 | 1.384907e-48 | -8.615850e-47 |
| Msa0165220 | Msa0346360 | 0.805373 | 1.377502e-49 | -8.615850e-47 |
| Msa0220740 | Msa0346360 | 0.818873 | 1.561471e-52 | -8.615850e-47 |
| Msa0231880 | Msa0346360 | 0.819443 | 1.158111e-52 | -8.615850e-47 |
| Msa0241640 | Msa0346360 | 0.816929 | 4.291815e-52 | -8.615850e-47 |
| Msa0279790 | Msa0346360 | 0.819227 | 1.297597e-52 | -8.615850e-47 |
| Msa0320100 | Msa0346360 | 0.800927 | 1.145616e-48 | -8.615850e-47 |
| Msa0336040 | Msa0346360 | -0.807138 | 5.850367e-50 | -8.615850e-47 |
| Msa0346360 | Msa0351810 | 0.807135 | 5.861065e-50 | -8.615850e-47 |
| Msa0346360 | Msa0471800 | 0.814034 | 1.892269e-51 | -8.615850e-47 |
| Msa0346360 | Msa0526890 | 0.821488 | 3.931768e-53 | -8.615850e-47 |
| Msa0346360 | Msa0621590 | 0.814350 | 1.611456e-51 | -8.615850e-47 |
| Msa0346360 | Msa0638070 | 0.806674 | 7.335690e-50 | -8.615850e-47 |
| Msa0346360 | Msa0661190 | -0.801517 | 8.672509e-49 | -8.615850e-47 |
| Msa0346360 | Msa0690520 | 0.811676 | 6.213784e-51 | -8.615850e-47 |
| Msa0346360 | Msa0743720 | 0.809612 | 1.736163e-50 | -8.615850e-47 |
| Msa0346360 | Msa0777230 | 0.808980 | 2.371660e-50 | -8.615850e-47 |
| Msa0346360 | Msa0784380 | 0.814962 | 1.179275e-51 | -8.615850e-47 |
| Msa0346360 | Msa0824660 | 0.804436 | 2.162639e-49 | -8.615850e-47 |
| Msa0346360 | Msa0850960 | 0.808873 | 2.499883e-50 | -8.615850e-47 |
| Msa0346360 | Msa0971020 | 0.804645 | 1.955619e-49 | -8.615850e-47 |
| Msa0346360 | Msa1045200 | 0.807862 | 4.107839e-50 | -8.615850e-47 |
| Msa0346360 | Msa1127830 | 0.810771 | 9.767288e-51 | -8.615850e-47 |
| Msa0346360 | Msa1199560 | 0.801009 | 1.102322e-48 | -8.615850e-47 |
| Msa0346360 | Msa1217830 | 0.809667 | 1.689333e-50 | -8.615850e-47 |
| Msa0346360 | Msa1238930 | 0.802272 | 6.069164e-49 | -8.615850e-47 |
| Msa0346360 | Msa1345360 | 0.803762 | 2.986597e-49 | -8.615850e-47 |
| Msa0346360 | Msa1417530 | 0.800723 | 1.260593e-48 | -8.615850e-47 |
| Msa0346360 | Msa1440000 | 0.807839 | 4.154529e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0346360 | MtrunA17_Chr3g0078281 | 95.610 | 205 | 8 | 1 | 9 | 213 | 1 | 204 | 2.15e-144 | 400 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0346360 | AT5G04910.1 | 69.231 | 182 | 56 | 0 | 32 | 213 | 41 | 222 | 4.94e-83 | 246 |
Find 56 sgRNAs with CRISPR-Local
Find 192 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGGAAGAAGATTTGGAATT+TGG | 0.083112 | 3_1:-6765340 | Msa0346360:CDS |
| GATTGTAATGGATGGTTATT+TGG | 0.208831 | 3_1:-6762088 | Msa0346360:three_prime_UTR |
| ACAAGTAATTTATATTAAAA+TGG | 0.239680 | 3_1:-6762165 | Msa0346360:three_prime_UTR |
| ACGAAGCAAAACAGCGATTT+TGG | 0.256682 | 3_1:+6765267 | None:intergenic |
| CGGAGTGATGGAAGAAGATT+TGG | 0.282022 | 3_1:-6765347 | Msa0346360:CDS |
| AAGGAGATCACTGAAGCTTC+TGG | 0.308239 | 3_1:-6762439 | Msa0346360:CDS |
| CATGACTTCTGGAGGGGAAT+TGG | 0.328109 | 3_1:-6764015 | Msa0346360:CDS |
| ACACAAGAAGGGTGCCGTTT+TGG | 0.333658 | 3_1:-6765425 | Msa0346360:five_prime_UTR |
| TGGAAGAAGATTTGGAATTT+GGG | 0.347258 | 3_1:-6765339 | Msa0346360:CDS |
| TGCTCAGTGCTAACAGATAT+TGG | 0.350928 | 3_1:-6762253 | Msa0346360:three_prime_UTR |
| CCTGTTCTTGAACAGCTCTA+AGG | 0.384342 | 3_1:+6763762 | None:intergenic |
| TTGAAAATTTGCAATTATCA+TGG | 0.392819 | 3_1:+6762491 | None:intergenic |
| AGATCAATGCGGCTATAGTC+AGG | 0.401278 | 3_1:+6763794 | None:intergenic |
| ACTTTATTACTTGATTGTAA+TGG | 0.416431 | 3_1:-6762100 | Msa0346360:three_prime_UTR |
| CCTTAGAGCTGTTCAAGAAC+AGG | 0.429245 | 3_1:-6763762 | Msa0346360:CDS |
| GTTTCTTCCCTTTGCCAAAA+CGG | 0.431987 | 3_1:+6765411 | None:intergenic |
| AGATTTGGAATTTGGGAAGA+AGG | 0.436083 | 3_1:-6765332 | Msa0346360:CDS |
| AAGCTTATTCCAAACTCAAA+AGG | 0.441845 | 3_1:-6765213 | Msa0346360:intron |
| GCATGAGTGTGTCCATGTTA+AGG | 0.447012 | 3_1:-6762458 | Msa0346360:CDS |
| CCGCTTTCTTTAACAGCTGA+AGG | 0.459259 | 3_1:+6762539 | None:intergenic |
| ATCATGGCTTACCAGTCGTT+CGG | 0.468178 | 3_1:+6762507 | None:intergenic |
| TTGGCTTATCAGCAGCTTTG+CGG | 0.476285 | 3_1:-6763996 | Msa0346360:CDS |
| GAAACAACGACTCCATTTCA+CGG | 0.488812 | 3_1:+6763822 | None:intergenic |
| TGGACACACTCATGCTCTGT+TGG | 0.499630 | 3_1:+6762466 | None:intergenic |
| TTTAGCATAGGTCCGTGAAA+TGG | 0.500168 | 3_1:-6763834 | Msa0346360:intron |
| AGGAGATCACTGAAGCTTCT+GGG | 0.504065 | 3_1:-6762438 | Msa0346360:CDS |
| TGATGACCATGACAGCATCT+TGG | 0.506643 | 3_1:+6762353 | None:intergenic |
| TTTCTTTATGATAAACGAGT+AGG | 0.518535 | 3_1:-6762050 | Msa0346360:three_prime_UTR |
| GGAAAAGCAGAAACTACATC+TGG | 0.524115 | 3_1:-6763741 | Msa0346360:intron |
| CAGTGCTAACAGATATTGGC+AGG | 0.530419 | 3_1:-6762249 | Msa0346360:three_prime_UTR |
| GGGTCGGCCATCCGAACGAC+TGG | 0.546391 | 3_1:-6762518 | Msa0346360:CDS |
| CAATTACAAACGACACAAGA+AGG | 0.546771 | 3_1:-6765437 | None:intergenic |
| TTCGATAAACGACGATACAA+TGG | 0.547298 | 3_1:-6765308 | Msa0346360:CDS |
| TATTACTTGATTGTAATGGA+TGG | 0.548701 | 3_1:-6762096 | Msa0346360:three_prime_UTR |
| TGGCAGGTGTTTACAACCAG+TGG | 0.551061 | 3_1:-6762233 | Msa0346360:three_prime_UTR |
| TGTGCCTATGTACATTCCAC+TGG | 0.555149 | 3_1:+6762217 | None:intergenic |
| CTTCAGCTGTTAAAGAAAGC+GGG | 0.562359 | 3_1:-6762538 | Msa0346360:CDS |
| CTTCAGTGATCTCCTTAACA+TGG | 0.563538 | 3_1:+6762446 | None:intergenic |
| GCTGTGAATGAAGCTATTAG+AGG | 0.564398 | 3_1:-6762379 | Msa0346360:CDS |
| AGTGAGTGAGTTGAATGAAA+AGG | 0.565722 | 3_1:-6765378 | Msa0346360:exon |
| GCTTATCAGCAGCTTTGCGG+TGG | 0.567237 | 3_1:-6763993 | Msa0346360:CDS |
| ACTTGAAGCAGAGTAATACT+TGG | 0.577210 | 3_1:-6762293 | Msa0346360:exon |
| AGGTGTCCAAGATGCTGTCA+TGG | 0.585773 | 3_1:-6762359 | Msa0346360:CDS |
| CCTTCAGCTGTTAAAGAAAG+CGG | 0.588320 | 3_1:-6762539 | Msa0346360:CDS |
| TGGGACTGAAGAAGCAGAAG+CGG | 0.588338 | 3_1:-6762419 | Msa0346360:CDS |
| ATTCACAGCATTATCATACT+CGG | 0.588368 | 3_1:+6762393 | None:intergenic |
| CGCTTTCTTTAACAGCTGAA+GGG | 0.591750 | 3_1:+6762540 | None:intergenic |
| CTGACTACATGACTTCTGGA+GGG | 0.596770 | 3_1:-6764022 | Msa0346360:CDS |
| ACAACCAGTGGAATGTACAT+AGG | 0.597483 | 3_1:-6762221 | Msa0346360:three_prime_UTR |
| TCTGACTACATGACTTCTGG+AGG | 0.598390 | 3_1:-6764023 | Msa0346360:CDS |
| TGGCTTACCAGTCGTTCGGA+TGG | 0.598843 | 3_1:+6762511 | None:intergenic |
| TGACTACATGACTTCTGGAG+GGG | 0.607829 | 3_1:-6764021 | Msa0346360:CDS |
| AATTACAAACGACACAAGAA+GGG | 0.625253 | 3_1:-6765436 | None:intergenic |
| GATCAATGCGGCTATAGTCA+GGG | 0.644027 | 3_1:+6763795 | None:intergenic |
| AGCTGTTAAAGAAAGCGGGT+CGG | 0.673250 | 3_1:-6762534 | Msa0346360:CDS |
| GGATTTGTGCTAGATCAATG+CGG | 0.738873 | 3_1:+6763783 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAAGTAATTTATATTAAAA+TGG | - | chr3_1:6765302-6765321 | Msa0346360:CDS | 10.0% |
| !!! | TTAAATTTCTAGATTTATGT+TGG | - | chr3_1:6763212-6763231 | Msa0346360:intron | 15.0% |
| !!! | TGAATTTTCATAATAGAAAA+AGG | + | chr3_1:6763323-6763342 | None:intergenic | 15.0% |
| !! | AATTCATACAATGTATTAAT+AGG | - | chr3_1:6763337-6763356 | Msa0346360:intron | 15.0% |
| !! | ATTCATACAATGTATTAATA+GGG | - | chr3_1:6763338-6763357 | Msa0346360:intron | 15.0% |
| !! | ACTAATTATAGTTGATTAAA+TGG | + | chr3_1:6764042-6764061 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTTTTAGTGTGAT+CGG | + | chr3_1:6764653-6764672 | None:intergenic | 15.0% |
| !!! | TATGTTGGTTGTTTTTTAAA+AGG | - | chr3_1:6763227-6763246 | Msa0346360:intron | 20.0% |
| !!! | TTCTTTTTATATCTTCTATC+TGG | - | chr3_1:6763858-6763877 | Msa0346360:intron | 20.0% |
| !! | TTGAACAAACATGAAATTAA+AGG | + | chr3_1:6764140-6764159 | None:intergenic | 20.0% |
| !!! | AAGCTGATTTAACTTAAAAA+AGG | + | chr3_1:6764226-6764245 | None:intergenic | 20.0% |
| !!! | CATAATTTTTTTCTGAAAAC+AGG | + | chr3_1:6764325-6764344 | None:intergenic | 20.0% |
| !! | TTCAGAAAAAAATTATGAAC+TGG | - | chr3_1:6764328-6764347 | Msa0346360:intron | 20.0% |
| !! | TCAGAAAAAAATTATGAACT+GGG | - | chr3_1:6764329-6764348 | Msa0346360:intron | 20.0% |
| !! | TTCTTAAGGTAATACTATTA+GGG | + | chr3_1:6764495-6764514 | None:intergenic | 20.0% |
| !! | TTTCTTAAGGTAATACTATT+AGG | + | chr3_1:6764496-6764515 | None:intergenic | 20.0% |
| !! | AATACAAAACACTTGAATTT+AGG | + | chr3_1:6764874-6764893 | None:intergenic | 20.0% |
| !! | TTGAAAATTTGCAATTATCA+TGG | + | chr3_1:6764979-6764998 | None:intergenic | 20.0% |
| !! | ACTTTATTACTTGATTGTAA+TGG | - | chr3_1:6765367-6765386 | Msa0346360:CDS | 20.0% |
| !! | AGTTGAATTTTTGTGCAATT+TGG | + | chr3_1:6762302-6762321 | None:intergenic | 25.0% |
| !! | TTAGTAGTTATGTTAGTTTC+CGG | - | chr3_1:6762457-6762476 | Msa0346360:CDS | 25.0% |
| ! | TAACTTAAACTATGTGTGTT+TGG | - | chr3_1:6762561-6762580 | Msa0346360:intron | 25.0% |
| ! | AATTAAATATACCGTAACAC+CGG | + | chr3_1:6762931-6762950 | None:intergenic | 25.0% |
| ! | TCAAAATTCCAAAAACATTC+TGG | + | chr3_1:6763004-6763023 | None:intergenic | 25.0% |
| ! | GTAAGTTAACTTCAATCTTA+GGG | - | chr3_1:6763273-6763292 | Msa0346360:intron | 25.0% |
| ! | CAATGTCATTATGAAACATT+TGG | + | chr3_1:6763399-6763418 | None:intergenic | 25.0% |
| ! | GTTTAATGATTGCTCAAAAA+AGG | - | chr3_1:6763509-6763528 | Msa0346360:intron | 25.0% |
| ! | TGAAAGAAAACGATAATGTT+AGG | + | chr3_1:6763548-6763567 | None:intergenic | 25.0% |
| !! | TATCTTTTCTGATTTAGCAT+AGG | - | chr3_1:6763621-6763640 | Msa0346360:intron | 25.0% |
| !! | TGATGTTTTATGTGCATTAT+TGG | - | chr3_1:6763925-6763944 | Msa0346360:intron | 25.0% |
| ! | TATAGTTGATTAAATGGAAC+AGG | + | chr3_1:6764036-6764055 | None:intergenic | 25.0% |
| ! | GTTAAAATATTAGCTAAACC+TGG | - | chr3_1:6764183-6764202 | Msa0346360:intron | 25.0% |
| ! | TAATTCAAAAACTTCAGTTC+TGG | - | chr3_1:6764389-6764408 | Msa0346360:intron | 25.0% |
| !! | ACATCTTTTGATATGTTTCA+CGG | - | chr3_1:6764543-6764562 | Msa0346360:intron | 25.0% |
| !! | ATTTTGTTGAATCACTTGAA+CGG | - | chr3_1:6764683-6764702 | Msa0346360:intron | 25.0% |
| !!! | ATTCTGCTTACTTTTAATTG+TGG | - | chr3_1:6764810-6764829 | Msa0346360:intron | 25.0% |
| !! | TATTACTTGATTGTAATGGA+TGG | - | chr3_1:6765371-6765390 | Msa0346360:exon | 25.0% |
| ! | TTTCTTTATGATAAACGAGT+AGG | - | chr3_1:6765417-6765436 | Msa0346360:five_prime_UTR | 25.0% |
| TGAATGAAAAGGCGAAAAAT+CGG | - | chr3_1:6762100-6762119 | Msa0346360:three_prime_UTR | 30.0% | |
| ! | ATGGAAGAAGATTTGGAATT+TGG | - | chr3_1:6762127-6762146 | Msa0346360:three_prime_UTR | 30.0% |
| ! | TGGAAGAAGATTTGGAATTT+GGG | - | chr3_1:6762128-6762147 | Msa0346360:three_prime_UTR | 30.0% |
| AAGCTTATTCCAAACTCAAA+AGG | - | chr3_1:6762254-6762273 | Msa0346360:three_prime_UTR | 30.0% | |
| ! | TGAATTTTTGTGCAATTTGG+CGG | + | chr3_1:6762299-6762318 | None:intergenic | 30.0% |
| ! | ATCTTTTGATCTGTAACCTA+TGG | - | chr3_1:6762378-6762397 | Msa0346360:CDS | 30.0% |
| TAGCTTCTGTAAAATCACAA+TGG | + | chr3_1:6762619-6762638 | None:intergenic | 30.0% | |
| !! | AAGCTAAAAAGTGTAGCTTT+TGG | - | chr3_1:6762633-6762652 | Msa0346360:intron | 30.0% |
| ATAGCCTATGTTTAGTATCA+CGG | + | chr3_1:6762696-6762715 | None:intergenic | 30.0% | |
| TATATCAATGTTGTCAACAG+TGG | - | chr3_1:6762713-6762732 | Msa0346360:intron | 30.0% | |
| ! | AAATCTTGCCAGAATGTTTT+TGG | - | chr3_1:6762993-6763012 | Msa0346360:intron | 30.0% |
| CGTAAGTTAACTTCAATCTT+AGG | - | chr3_1:6763272-6763291 | Msa0346360:intron | 30.0% | |
| CAATGTATTAATAGGGCTAT+TGG | - | chr3_1:6763345-6763364 | Msa0346360:intron | 30.0% | |
| TGACATTGAAATTTGACACT+TGG | - | chr3_1:6763411-6763430 | Msa0346360:intron | 30.0% | |
| AAGAAATGTGCTTAAACTAG+GGG | + | chr3_1:6763756-6763775 | None:intergenic | 30.0% | |
| GAAGAAATGTGCTTAAACTA+GGG | + | chr3_1:6763757-6763776 | None:intergenic | 30.0% | |
| AGAAGAAATGTGCTTAAACT+AGG | + | chr3_1:6763758-6763777 | None:intergenic | 30.0% | |
| CATTCATACAGAATGATCAT+AGG | + | chr3_1:6763821-6763840 | None:intergenic | 30.0% | |
| CTCTTTGACCATTAAATCTT+CGG | - | chr3_1:6763963-6763982 | Msa0346360:CDS | 30.0% | |
| AAGAATAGCCGAAGATTTAA+TGG | + | chr3_1:6763974-6763993 | None:intergenic | 30.0% | |
| ATTTGACTAAACATTCCAAC+AGG | + | chr3_1:6764087-6764106 | None:intergenic | 30.0% | |
| AATTAAAGGAACATCCTTGA+GGG | + | chr3_1:6764126-6764145 | None:intergenic | 30.0% | |
| AAATTAAAGGAACATCCTTG+AGG | + | chr3_1:6764127-6764146 | None:intergenic | 30.0% | |
| CCTTAATCTTGGTATAAACA+AGG | + | chr3_1:6764264-6764283 | None:intergenic | 30.0% | |
| ! | CCTTGTTTATACCAAGATTA+AGG | - | chr3_1:6764261-6764280 | Msa0346360:intron | 30.0% |
| ACATAAATGTAGCATGTCTT+TGG | + | chr3_1:6764467-6764486 | None:intergenic | 30.0% | |
| TGTGTTAAGTCTAATCAATC+AGG | + | chr3_1:6764608-6764627 | None:intergenic | 30.0% | |
| ! | TTGACCTTGAAAATTTTGCT+CGG | - | chr3_1:6764759-6764778 | Msa0346360:intron | 30.0% |
| ! | TTATCCGAGCAAAATTTTCA+AGG | + | chr3_1:6764766-6764785 | None:intergenic | 30.0% |
| AAGTAAGCAGAATAACTAAC+TGG | + | chr3_1:6764803-6764822 | None:intergenic | 30.0% | |
| ATTCACAGCATTATCATACT+CGG | + | chr3_1:6765077-6765096 | None:intergenic | 30.0% | |
| !! | GATTGTAATGGATGGTTATT+TGG | - | chr3_1:6765379-6765398 | Msa0346360:exon | 30.0% |
| ! | AGTGAGTGAGTTGAATGAAA+AGG | - | chr3_1:6762089-6762108 | Msa0346360:three_prime_UTR | 35.0% |
| ! | AGATTTGGAATTTGGGAAGA+AGG | - | chr3_1:6762135-6762154 | Msa0346360:three_prime_UTR | 35.0% |
| TTCGATAAACGACGATACAA+TGG | - | chr3_1:6762159-6762178 | Msa0346360:three_prime_UTR | 35.0% | |
| !!! | AGTAACGAACCTTTTGAGTT+TGG | + | chr3_1:6762266-6762285 | None:intergenic | 35.0% |
| !!! | ACTGAGTCATTTTTAGCCAT+AGG | + | chr3_1:6762397-6762416 | None:intergenic | 35.0% |
| AACTATGTGTGTTTGGTATC+AGG | - | chr3_1:6762568-6762587 | Msa0346360:intron | 35.0% | |
| ACTATGTGTGTTTGGTATCA+GGG | - | chr3_1:6762569-6762588 | Msa0346360:intron | 35.0% | |
| !! | AGCTTTTGGAAAATCACGAT+AGG | - | chr3_1:6762647-6762666 | Msa0346360:intron | 35.0% |
| !! | TTTGACCTAATTCTGAGATG+TGG | - | chr3_1:6763019-6763038 | Msa0346360:intron | 35.0% |
| TAGTACCACATCTCAGAATT+AGG | + | chr3_1:6763027-6763046 | None:intergenic | 35.0% | |
| TGAAGCAGCAGTCAAAATAA+TGG | + | chr3_1:6763065-6763084 | None:intergenic | 35.0% | |
| ! | TTTTCTGACTACATGACTTC+TGG | - | chr3_1:6763441-6763460 | Msa0346360:intron | 35.0% |
| TGCATTATTGGTATATCGAG+TGG | - | chr3_1:6763937-6763956 | Msa0346360:intron | 35.0% | |
| GCATTATTGGTATATCGAGT+GGG | - | chr3_1:6763938-6763957 | Msa0346360:intron | 35.0% | |
| ACATAGTAACTTGATCCTGT+TGG | - | chr3_1:6764069-6764088 | Msa0346360:intron | 35.0% | |
| CATGTTTGTTCAACCTGTTA+AGG | - | chr3_1:6764147-6764166 | Msa0346360:intron | 35.0% | |
| GCTACATTTAGATATTCACC+AGG | + | chr3_1:6764204-6764223 | None:intergenic | 35.0% | |
| ! | TTCTGAAAACAGGTGATTTG+AGG | + | chr3_1:6764315-6764334 | None:intergenic | 35.0% |
| AAAATCAGACAACTTCTCTG+TGG | - | chr3_1:6764415-6764434 | Msa0346360:intron | 35.0% | |
| TAAATGTAGCATGTCTTTGG+TGG | + | chr3_1:6764464-6764483 | None:intergenic | 35.0% | |
| ACCTTAAGAAAAATCCCCAA+AGG | - | chr3_1:6764505-6764524 | Msa0346360:intron | 35.0% | |
| CCTTAAGAAAAATCCCCAAA+GGG | - | chr3_1:6764506-6764525 | Msa0346360:intron | 35.0% | |
| AATATATTGACCACCCTTTG+GGG | + | chr3_1:6764522-6764541 | None:intergenic | 35.0% | |
| CAATATATTGACCACCCTTT+GGG | + | chr3_1:6764523-6764542 | None:intergenic | 35.0% | |
| TCAATATATTGACCACCCTT+TGG | + | chr3_1:6764524-6764543 | None:intergenic | 35.0% | |
| TTGCTCGGATAACATGATAA+CGG | - | chr3_1:6764774-6764793 | Msa0346360:intron | 35.0% | |
| !! | CTTTTAATTGTGGACGTGAT+TGG | - | chr3_1:6764820-6764839 | Msa0346360:intron | 35.0% |
| ACTTGAAGCAGAGTAATACT+TGG | - | chr3_1:6765174-6765193 | Msa0346360:intron | 35.0% | |
| GTTTCTTCCCTTTGCCAAAA+CGG | + | chr3_1:6762059-6762078 | None:intergenic | 40.0% | |
| ! | AAGCAAAACAGCGATTTTGG+TGG | + | chr3_1:6762200-6762219 | None:intergenic | 40.0% |
| ! | ACGAAGCAAAACAGCGATTT+TGG | + | chr3_1:6762203-6762222 | None:intergenic | 40.0% |
| TAACAGTCATCTTGCTCTCT+GGG | + | chr3_1:6762427-6762446 | None:intergenic | 40.0% | |
| ATAACAGTCATCTTGCTCTC+TGG | + | chr3_1:6762428-6762447 | None:intergenic | 40.0% | |
| ! | TAGTTTGTACAAGCGTGTTG+CGG | - | chr3_1:6762757-6762776 | Msa0346360:intron | 40.0% |
| ! | AATATACCGTAACACCGGTT+AGG | + | chr3_1:6762926-6762945 | None:intergenic | 40.0% |
| !!! | GATTTTCAGTTCGGTGTTTC+AGG | + | chr3_1:6762963-6762982 | None:intergenic | 40.0% |
| !! | CACGTTTGGGATTTTCAGTT+CGG | + | chr3_1:6762972-6762991 | None:intergenic | 40.0% |
| CTGGCAAGATTTACACGTTT+GGG | + | chr3_1:6762985-6763004 | None:intergenic | 40.0% | |
| TCTGGCAAGATTTACACGTT+TGG | + | chr3_1:6762986-6763005 | None:intergenic | 40.0% | |
| ! | TCTGAGATGTGGTACTATAG+CGG | - | chr3_1:6763030-6763049 | Msa0346360:intron | 40.0% |
| GAACAGAGTAAATCAGTCTG+TGG | + | chr3_1:6763131-6763150 | None:intergenic | 40.0% | |
| TGAAATTTGACACTTGGCAG+TGG | - | chr3_1:6763417-6763436 | Msa0346360:intron | 40.0% | |
| TTTAGCATAGGTCCGTGAAA+TGG | - | chr3_1:6763633-6763652 | Msa0346360:intron | 40.0% | |
| GAAACAACGACTCCATTTCA+CGG | + | chr3_1:6763648-6763667 | None:intergenic | 40.0% | |
| GGATTTGTGCTAGATCAATG+CGG | + | chr3_1:6763687-6763706 | None:intergenic | 40.0% | |
| GGAAAAGCAGAAACTACATC+TGG | - | chr3_1:6763726-6763745 | Msa0346360:intron | 40.0% | |
| ATTGAAGTTTCGTACCCTCA+AGG | - | chr3_1:6764109-6764128 | Msa0346360:intron | 40.0% | |
| CAAACAAAGAGAGCCTTAAC+AGG | + | chr3_1:6764163-6764182 | None:intergenic | 40.0% | |
| CTGTTAAGGCTCTCTTTGTT+TGG | - | chr3_1:6764161-6764180 | Msa0346360:intron | 40.0% | |
| GGACGAAAAAGCCTTAATCT+TGG | + | chr3_1:6764275-6764294 | None:intergenic | 40.0% | |
| GAGGTAGCATGTCATAAAGA+AGG | + | chr3_1:6764296-6764315 | None:intergenic | 40.0% | |
| TAACACCCTTGGTTGGATTA+GGG | - | chr3_1:6764352-6764371 | Msa0346360:intron | 40.0% | |
| AACTACCCTAATCCAACCAA+GGG | + | chr3_1:6764360-6764379 | None:intergenic | 40.0% | |
| AAACTACCCTAATCCAACCA+AGG | + | chr3_1:6764361-6764380 | None:intergenic | 40.0% | |
| TCTGTGGTCATCTGTTAACT+TGG | - | chr3_1:6764431-6764450 | Msa0346360:intron | 40.0% | |
| !! | CCCTTTGGGGATTTTTCTTA+AGG | + | chr3_1:6764509-6764528 | None:intergenic | 40.0% |
| TAAGAAAAATCCCCAAAGGG+TGG | - | chr3_1:6764509-6764528 | Msa0346360:intron | 40.0% | |
| GTTGAATCACTTGAACGGAA+CGG | - | chr3_1:6764688-6764707 | Msa0346360:intron | 40.0% | |
| CGCTTTCTTTAACAGCTGAA+GGG | + | chr3_1:6764930-6764949 | None:intergenic | 40.0% | |
| CCTTCAGCTGTTAAAGAAAG+CGG | - | chr3_1:6764928-6764947 | Msa0346360:intron | 40.0% | |
| CTTCAGCTGTTAAAGAAAGC+GGG | - | chr3_1:6764929-6764948 | Msa0346360:intron | 40.0% | |
| CTTCAGTGATCTCCTTAACA+TGG | + | chr3_1:6765024-6765043 | None:intergenic | 40.0% | |
| GCTGTGAATGAAGCTATTAG+AGG | - | chr3_1:6765088-6765107 | Msa0346360:intron | 40.0% | |
| TGCTCAGTGCTAACAGATAT+TGG | - | chr3_1:6765214-6765233 | Msa0346360:CDS | 40.0% | |
| ACAACCAGTGGAATGTACAT+AGG | - | chr3_1:6765246-6765265 | Msa0346360:CDS | 40.0% | |
| AAGGCGAAAAATCGGAGTGA+TGG | - | chr3_1:6762108-6762127 | Msa0346360:three_prime_UTR | 45.0% | |
| ! | CGGAGTGATGGAAGAAGATT+TGG | - | chr3_1:6762120-6762139 | Msa0346360:three_prime_UTR | 45.0% |
| ACATTAAACGAGGAGGTCTC+GGG | + | chr3_1:6762490-6762509 | None:intergenic | 45.0% | |
| GACATTAAACGAGGAGGTCT+CGG | + | chr3_1:6762491-6762510 | None:intergenic | 45.0% | |
| CTAAGCGACATTAAACGAGG+AGG | + | chr3_1:6762497-6762516 | None:intergenic | 45.0% | |
| GAGCTAAGCGACATTAAACG+AGG | + | chr3_1:6762500-6762519 | None:intergenic | 45.0% | |
| AAAGTCCCGTGTAAGTAGCT+CGG | + | chr3_1:6762528-6762547 | None:intergenic | 45.0% | |
| ATGTGTGTTTGGTATCAGGG+TGG | - | chr3_1:6762572-6762591 | Msa0346360:intron | 45.0% | |
| TGTGTGTTTGGTATCAGGGT+GGG | - | chr3_1:6762573-6762592 | Msa0346360:intron | 45.0% | |
| CTCGCCGTGATACTAAACAT+AGG | - | chr3_1:6762689-6762708 | Msa0346360:intron | 45.0% | |
| ATGTGGTACTATAGCGGTTG+CGG | - | chr3_1:6763036-6763055 | Msa0346360:intron | 45.0% | |
| GGCAGAACCATCTAGTATAG+CGG | + | chr3_1:6763089-6763108 | None:intergenic | 45.0% | |
| TCTGACTACATGACTTCTGG+AGG | - | chr3_1:6763444-6763463 | Msa0346360:intron | 45.0% | |
| CTGACTACATGACTTCTGGA+GGG | - | chr3_1:6763445-6763464 | Msa0346360:intron | 45.0% | |
| ! | TGACTACATGACTTCTGGAG+GGG | - | chr3_1:6763446-6763465 | Msa0346360:intron | 45.0% |
| TTGGCTTATCAGCAGCTTTG+CGG | - | chr3_1:6763471-6763490 | Msa0346360:intron | 45.0% | |
| GATCAATGCGGCTATAGTCA+GGG | + | chr3_1:6763675-6763694 | None:intergenic | 45.0% | |
| AGATCAATGCGGCTATAGTC+AGG | + | chr3_1:6763676-6763695 | None:intergenic | 45.0% | |
| CCTGTTCTTGAACAGCTCTA+AGG | + | chr3_1:6763708-6763727 | None:intergenic | 45.0% | |
| CCTTAGAGCTGTTCAAGAAC+AGG | - | chr3_1:6763705-6763724 | Msa0346360:intron | 45.0% | |
| TATGAACTGGGTAACACCCT+TGG | - | chr3_1:6764341-6764360 | Msa0346360:intron | 45.0% | |
| GTAACACCCTTGGTTGGATT+AGG | - | chr3_1:6764351-6764370 | Msa0346360:intron | 45.0% | |
| !! | CTTTGCTGTTCTTCCTCAAG+TGG | - | chr3_1:6764720-6764739 | Msa0346360:intron | 45.0% |
| CCGCTTTCTTTAACAGCTGA+AGG | + | chr3_1:6764931-6764950 | None:intergenic | 45.0% | |
| AGCTGTTAAAGAAAGCGGGT+CGG | - | chr3_1:6764933-6764952 | Msa0346360:intron | 45.0% | |
| ATCATGGCTTACCAGTCGTT+CGG | + | chr3_1:6764963-6764982 | None:intergenic | 45.0% | |
| GCATGAGTGTGTCCATGTTA+AGG | - | chr3_1:6765009-6765028 | Msa0346360:intron | 45.0% | |
| AAGGAGATCACTGAAGCTTC+TGG | - | chr3_1:6765028-6765047 | Msa0346360:intron | 45.0% | |
| AGGAGATCACTGAAGCTTCT+GGG | - | chr3_1:6765029-6765048 | Msa0346360:intron | 45.0% | |
| TGATGACCATGACAGCATCT+TGG | + | chr3_1:6765117-6765136 | None:intergenic | 45.0% | |
| CAGTGCTAACAGATATTGGC+AGG | - | chr3_1:6765218-6765237 | Msa0346360:CDS | 45.0% | |
| TGTGCCTATGTACATTCCAC+TGG | + | chr3_1:6765253-6765272 | None:intergenic | 45.0% | |
| !!! | ACACAAGAAGGGTGCCGTTT+TGG | - | chr3_1:6762042-6762061 | Msa0346360:three_prime_UTR | 50.0% |
| !!! | AAGGGTGCCGTTTTGGCAAA+GGG | - | chr3_1:6762049-6762068 | Msa0346360:three_prime_UTR | 50.0% |
| CACCAACCGAGCTACTTACA+CGG | - | chr3_1:6762519-6762538 | Msa0346360:CDS | 50.0% | |
| ACCAACCGAGCTACTTACAC+GGG | - | chr3_1:6762520-6762539 | Msa0346360:CDS | 50.0% | |
| GGGTGGGTATGTCAGAATCA+CGG | - | chr3_1:6762589-6762608 | Msa0346360:intron | 50.0% | |
| ! | GAGAAGCCTAACCGGTGTTA+CGG | - | chr3_1:6762917-6762936 | Msa0346360:intron | 50.0% |
| GCTTCAGCCGCTATACTAGA+TGG | - | chr3_1:6763079-6763098 | Msa0346360:intron | 50.0% | |
| ATCAGTCTGTGGCGTCTACA+TGG | + | chr3_1:6763120-6763139 | None:intergenic | 50.0% | |
| ! | CATGACTTCTGGAGGGGAAT+TGG | - | chr3_1:6763452-6763471 | Msa0346360:intron | 50.0% |
| AACTGGGTAACACCCTTGGT+TGG | - | chr3_1:6764345-6764364 | Msa0346360:intron | 50.0% | |
| ! | AGCATGTCTTTGGTGGTCAC+TGG | + | chr3_1:6764457-6764476 | None:intergenic | 50.0% |
| ACTGCAAGCAACACCACTTG+AGG | + | chr3_1:6764736-6764755 | None:intergenic | 50.0% | |
| !! | CAAGTGGTGTTGCTTGCAGT+TGG | - | chr3_1:6764736-6764755 | Msa0346360:intron | 50.0% |
| TGGACACACTCATGCTCTGT+TGG | + | chr3_1:6765004-6765023 | None:intergenic | 50.0% | |
| TGGGACTGAAGAAGCAGAAG+CGG | - | chr3_1:6765048-6765067 | Msa0346360:intron | 50.0% | |
| AGGTGTCCAAGATGCTGTCA+TGG | - | chr3_1:6765108-6765127 | Msa0346360:intron | 50.0% | |
| TGGCAGGTGTTTACAACCAG+TGG | - | chr3_1:6765234-6765253 | Msa0346360:CDS | 50.0% | |
| !!! | GAAGGGTGCCGTTTTGGCAA+AGG | - | chr3_1:6762048-6762067 | Msa0346360:three_prime_UTR | 55.0% |
| GGAGGTCTCGGGTTTATCTC+CGG | + | chr3_1:6762479-6762498 | None:intergenic | 55.0% | |
| TCCCGTGTAAGTAGCTCGGT+TGG | + | chr3_1:6762524-6762543 | None:intergenic | 55.0% | |
| GACAGCGAGAGAAGCCTAAC+CGG | - | chr3_1:6762909-6762928 | Msa0346360:intron | 55.0% | |
| GGCGTCTACATGGCACACAA+TGG | + | chr3_1:6763110-6763129 | None:intergenic | 55.0% | |
| GCTTATCAGCAGCTTTGCGG+TGG | - | chr3_1:6763474-6763493 | Msa0346360:intron | 55.0% | |
| TGGCTTACCAGTCGTTCGGA+TGG | + | chr3_1:6764959-6764978 | None:intergenic | 55.0% | |
| GGGTCGGCCATCCGAACGAC+TGG | - | chr3_1:6764949-6764968 | Msa0346360:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 6762041 | 6765448 | 6762041 | ID=Msa0346360;Name=Msa0346360 |
| chr3_1 | mRNA | 6762041 | 6765448 | 6762041 | ID=Msa0346360-mRNA-1;Parent=Msa0346360;Name=Msa0346360-mRNA-1;_AED=0.10;_eAED=0.10;_QI=62|1|1|1|1|1|4|259|213 |
| chr3_1 | exon | 6762041 | 6762569 | 6762041 | ID=Msa0346360-mRNA-1:exon:1888;Parent=Msa0346360-mRNA-1 |
| chr3_1 | exon | 6763742 | 6763846 | 6763742 | ID=Msa0346360-mRNA-1:exon:1887;Parent=Msa0346360-mRNA-1 |
| chr3_1 | exon | 6763959 | 6764052 | 6763959 | ID=Msa0346360-mRNA-1:exon:1886;Parent=Msa0346360-mRNA-1 |
| chr3_1 | exon | 6765214 | 6765448 | 6765214 | ID=Msa0346360-mRNA-1:exon:1885;Parent=Msa0346360-mRNA-1 |
| chr3_1 | five_prime_UTR | 6765387 | 6765448 | 6765387 | ID=Msa0346360-mRNA-1:five_prime_utr;Parent=Msa0346360-mRNA-1 |
| chr3_1 | CDS | 6765214 | 6765386 | 6765214 | ID=Msa0346360-mRNA-1:cds;Parent=Msa0346360-mRNA-1 |
| chr3_1 | CDS | 6763959 | 6764052 | 6763959 | ID=Msa0346360-mRNA-1:cds;Parent=Msa0346360-mRNA-1 |
| chr3_1 | CDS | 6763742 | 6763846 | 6763742 | ID=Msa0346360-mRNA-1:cds;Parent=Msa0346360-mRNA-1 |
| chr3_1 | CDS | 6762300 | 6762569 | 6762300 | ID=Msa0346360-mRNA-1:cds;Parent=Msa0346360-mRNA-1 |
| chr3_1 | three_prime_UTR | 6762041 | 6762299 | 6762041 | ID=Msa0346360-mRNA-1:three_prime_utr;Parent=Msa0346360-mRNA-1 |
| Gene Sequence |
| Protein sequence |
