AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0320100


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0320100 MtrunA17_Chr2g0294971 95.455 110 4 1 1 110 1 109 2.02e-75 223
Msa0320100 MtrunA17_Chr1g0192511 55.056 89 36 1 20 108 24 108 9.00e-33 115
Msa0320100 MtrunA17_Chr7g0271931 51.685 89 38 1 20 103 32 120 9.28e-30 108
Msa0320100 MtrunA17_Chr7g0269721 43.269 104 57 1 14 115 5 108 1.53e-25 96.3
Msa0320100 MtrunA17_Chr1g0192501 47.887 142 58 8 97 228 3 138 9.67e-24 92.4
Msa0320100 MtrunA17_Chr4g0046711 38.532 109 58 3 1 104 1 105 4.94e-21 84.3
Msa0320100 MtrunA17_Chr7g0271941 48.000 125 57 4 110 228 1 123 2.66e-20 83.2
Msa0320100 MtrunA17_Chr2g0294981 100.000 34 0 0 195 228 8 41 1.51e-16 70.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0320100 AT5G49230.1 47.863 234 93 8 1 228 1 211 2.95e-55 176
Msa0320100 AT3G05700.1 44.770 239 105 9 1 228 1 223 7.47e-52 167
Msa0320100 AT5G49230.2 46.154 234 92 8 1 228 1 206 1.69e-51 166
Msa0320100 AT3G06760.1 49.763 211 88 7 23 228 27 224 2.62e-51 166
Msa0320100 AT5G26990.1 44.167 240 104 9 1 228 1 222 6.27e-51 165
Msa0320100 AT3G05700.2 45.178 197 82 8 1 187 1 181 6.25e-43 144
Msa0320100 AT1G56280.1 42.991 214 87 8 20 226 14 199 2.80e-41 140
Msa0320100 AT1G56280.2 44.162 197 78 8 37 226 34 205 9.33e-38 131
Msa0320100 AT4G02200.1 40.415 193 89 6 39 225 37 209 8.93e-34 121
Msa0320100 AT3G06760.2 41.629 221 101 8 23 228 27 234 3.72e-32 117
Msa0320100 AT4G02200.2 39.459 185 86 6 39 217 37 201 2.69e-30 112
Msa0320100 AT4G02200.3 37.681 207 89 7 39 225 37 223 1.21e-29 110
Msa0320100 AT1G02750.1 36.041 197 97 6 39 227 41 216 3.59e-28 106
Msa0320100 AT1G02750.2 30.928 194 95 4 39 227 41 200 4.46e-21 87.8

Find 70 sgRNAs with CRISPR-Local

Find 172 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACACTCTCTATCTTCAATTT+AGG 0.061459 2_4:+20373533 Msa0320100:five_prime_UTR
CACTCTCTATCTTCAATTTA+GGG 0.237702 2_4:+20373534 Msa0320100:five_prime_UTR
GCAGGATTGCATTCTCTTCT+TGG 0.245703 2_4:+20375534 Msa0320100:CDS
GTGGTGGTGGTGATGATTTA+AGG 0.255964 2_4:+20373768 Msa0320100:CDS
CTAGTGTAGCAGCTGAAATA+AGG 0.265670 2_4:-20376518 None:intergenic
TGTAGCTGGTATACTATAAT+AGG 0.281627 2_4:+20376298 Msa0320100:three_prime_UTR
CTACACTAGACTGACATAAT+TGG 0.286778 2_4:+20376532 Msa0320100:three_prime_UTR
TCATAATCTTCAGCACAAAA+AGG 0.288334 2_4:-20373806 None:intergenic
ATTACATATTTACTCGATAA+AGG 0.293138 2_4:-20376443 None:intergenic
AAGTTTACGTGCAGCGTAAA+AGG 0.305767 2_4:+20375457 Msa0320100:CDS
AGAAAAGAGTTGAGGGAAGC+AGG 0.309169 2_4:+20375516 Msa0320100:CDS
TTGAATAGGTGCATATTAGA+TGG 0.343964 2_4:-20376486 None:intergenic
AAAGAAACCAACTTTCAAAA+AGG 0.347692 2_4:-20374951 None:intergenic
ACAGCTTCGTCACCAACAAC+TGG 0.357688 2_4:-20375624 None:intergenic
AACGATTGCAACAAAGTATC+AGG 0.362978 2_4:-20375591 None:intergenic
TTTCGAGCTATCGTTTACTA+TGG 0.363939 2_4:-20375679 None:intergenic
TTCAGGTGTGTCCTGCTTGT+GGG 0.376343 2_4:+20374864 Msa0320100:intron
CAAAGTATCAGGTTCGGAAT+TGG 0.385398 2_4:-20375580 None:intergenic
TGGTGGTGGTGATGATTTAA+GGG 0.397394 2_4:+20373769 Msa0320100:CDS
GTTTACTATGGCAGCTTCAA+TGG 0.397661 2_4:-20375667 None:intergenic
TAATGAATGTATCTATTGTT+AGG 0.400511 2_4:+20376462 Msa0320100:three_prime_UTR
AATATGCACCTATTCAAATA+TGG 0.407575 2_4:+20376492 Msa0320100:three_prime_UTR
TAGTGTAGCAGCTGAAATAA+GGG 0.424904 2_4:-20376517 None:intergenic
ATGAATCAGAGTCCATGTTT+TGG 0.426328 2_4:-20373571 None:intergenic
AGCAGTGCATGCACCTGGTT+TGG 0.430739 2_4:+20376584 Msa0320100:three_prime_UTR
CGCCGTTACTATTCTCGATC+CGG 0.436721 2_4:+20373623 Msa0320100:CDS
TAAGGGGACCATATTTGAAT+AGG 0.442155 2_4:-20376500 None:intergenic
AAAACATGGACTCTGATTCA+TGG 0.453838 2_4:+20373573 Msa0320100:exon
GGATTGCATTCTCTTCTTGG+AGG 0.458470 2_4:+20375537 Msa0320100:CDS
TTTCAGGTGTGTCCTGCTTG+TGG 0.467996 2_4:+20374863 Msa0320100:intron
CGAAGGTTTGATTTCGTGCA+AGG 0.485172 2_4:+20376231 Msa0320100:CDS
GTTATAATTGCAATTGTAGC+TGG 0.487425 2_4:+20376284 Msa0320100:exon
GTTATTTAGAAAAGAGTTGA+GGG 0.489200 2_4:+20375509 Msa0320100:CDS
GATGCTGAACCTGGTGGTGG+TGG 0.514579 2_4:+20373755 Msa0320100:CDS
AGTATCAGGTTCGGAATTGG+AGG 0.520777 2_4:-20375577 None:intergenic
GCAGGAGCTGATCGCGAGGG+AGG 0.524927 2_4:+20376322 Msa0320100:three_prime_UTR
TTATAACTCATCATCAAGAA+TGG 0.527350 2_4:-20376268 None:intergenic
CAGAGTGGCAGTAGCTAGAT+CGG 0.528724 2_4:+20376363 Msa0320100:three_prime_UTR
CGTTATTTAGAAAAGAGTTG+AGG 0.531210 2_4:+20375508 Msa0320100:CDS
TGGTATACTATAATAGGAGC+AGG 0.532207 2_4:+20376304 Msa0320100:three_prime_UTR
CAGGAGCTGATCGCGAGGGA+GGG 0.532264 2_4:+20376323 Msa0320100:three_prime_UTR
CTAAAAGCAGTGCATGCACC+TGG 0.539621 2_4:+20376579 Msa0320100:three_prime_UTR
TAGCTCGAAAGATGATTTCG+TGG 0.542543 2_4:+20375692 Msa0320100:CDS
TTGCAACAAAGTATCAGGTT+CGG 0.543065 2_4:-20375586 None:intergenic
ATCCTCTTCAAGCTAACACT+GGG 0.551131 2_4:+20373864 Msa0320100:CDS
AGGAGCAGGAGCTGATCGCG+AGG 0.557148 2_4:+20376318 Msa0320100:three_prime_UTR
CATCCTCTTCAAGCTAACAC+TGG 0.567489 2_4:+20373863 Msa0320100:CDS
CTTCTCTACTCGATCCTCGT+CGG 0.568903 2_4:-20376205 None:intergenic
GGAAATGATGATGCTGAACC+TGG 0.576479 2_4:+20373746 Msa0320100:CDS
ACCCCAGTGTTAGCTTGAAG+AGG 0.580064 2_4:-20373866 None:intergenic
CGAAAGATGATTTCGTGGAA+AGG 0.582410 2_4:+20375697 Msa0320100:CDS
GGAGCAGGAGCTGATCGCGA+GGG 0.589112 2_4:+20376319 Msa0320100:three_prime_UTR
TTCGGAATTGGAGGAAGCTG+TGG 0.593717 2_4:-20375568 None:intergenic
GAAGGTTTGATTTCGTGCAA+GGG 0.604633 2_4:+20376232 Msa0320100:CDS
CGTAAAAGGAGGGTGAGGAA+AGG 0.608256 2_4:+20375471 Msa0320100:CDS
CAGCTTCGTCACCAACAACT+GGG 0.608504 2_4:-20375623 None:intergenic
TTTACGTGCAGCGTAAAAGG+AGG 0.609185 2_4:+20375460 Msa0320100:CDS
TGCAGCGTAAAAGGAGGGTG+AGG 0.609548 2_4:+20375466 Msa0320100:CDS
AAATCATCACCACCACCACC+AGG 0.612097 2_4:-20373764 None:intergenic
GATGATGCTGAACCTGGTGG+TGG 0.614096 2_4:+20373752 Msa0320100:CDS
TAACTCATCATCAAGAATGG+TGG 0.628185 2_4:-20376265 None:intergenic
TCGTCGGAAAGCTGTACTTG+TGG 0.638527 2_4:-20376189 None:intergenic
AACCGGATCGAGAATAGTAA+CGG 0.650025 2_4:-20373625 None:intergenic
ATCGAGTAGAGAAGACACGA+AGG 0.652664 2_4:+20376214 Msa0320100:CDS
AGTGTAGCAGCTGAAATAAG+GGG 0.660186 2_4:-20376516 None:intergenic
TTACGTGCAGCGTAAAAGGA+GGG 0.661430 2_4:+20375461 Msa0320100:CDS
TTCATTCGAGTGTTACAGAG+TGG 0.673676 2_4:+20376348 Msa0320100:three_prime_UTR
ACAAGTACAGCTTTCCGACG+AGG 0.683663 2_4:+20376191 Msa0320100:CDS
AATGATGATGCTGAACCTGG+TGG 0.756267 2_4:+20373749 Msa0320100:CDS
TCCTCTTCAAGCTAACACTG+GGG 0.784823 2_4:+20373865 Msa0320100:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATTTTTTTGTTGAAATTT+TGG + chr2_4:20373681-20373700 Msa0320100:intron 10.0%
!!! AATAAAGATATGTTTAATTT+TGG + chr2_4:20374082-20374101 Msa0320100:intron 10.0%
!!! TTTTATTACATAAATTTGAT+AGG + chr2_4:20374462-20374481 Msa0320100:intron 10.0%
!! ATTGAAATTAATGATTATGA+TGG - chr2_4:20373655-20373674 None:intergenic 15.0%
!!! CAACAATTTATTTTAAAATG+TGG + chr2_4:20374209-20374228 Msa0320100:intron 15.0%
!!! TTAAAATGTGGTTATATTTT+AGG + chr2_4:20374221-20374240 Msa0320100:intron 15.0%
!!! TAAAATGTGGTTATATTTTA+GGG + chr2_4:20374222-20374241 Msa0320100:intron 15.0%
!!! TAAAAAATGTACACATTTTT+CGG - chr2_4:20375170-20375189 None:intergenic 15.0%
!!! AAAATGTGTACATTTTTTAA+TGG + chr2_4:20375171-20375190 Msa0320100:intron 15.0%
!!! TTTCAGTTTTCACATATATT+AGG + chr2_4:20373978-20373997 Msa0320100:intron 20.0%
!!! GTTTTAATTAAGGTTATACA+TGG + chr2_4:20374129-20374148 Msa0320100:intron 20.0%
!!! AAAATGTGGTTATATTTTAG+GGG + chr2_4:20374223-20374242 Msa0320100:intron 20.0%
!!! AAAATATCCTTTTTGAAAGT+TGG + chr2_4:20374944-20374963 Msa0320100:CDS 20.0%
!! AATGCAATAAAATATGAACA+TGG - chr2_4:20375107-20375126 None:intergenic 20.0%
!!! TCAAATAAAATTTGTTTTCC+AGG - chr2_4:20375130-20375149 None:intergenic 20.0%
!!! TCTATATAAAAGTATAGTAC+CGG + chr2_4:20375922-20375941 Msa0320100:intron 20.0%
!! ATTACATATTTACTCGATAA+AGG - chr2_4:20376446-20376465 None:intergenic 20.0%
!! TAATGAATGTATCTATTGTT+AGG + chr2_4:20376462-20376481 Msa0320100:three_prime_UTR 20.0%
!!! TTTTGGTGATGATTTGTTTT+TGG + chr2_4:20373698-20373717 Msa0320100:intron 25.0%
!!! GTTTTTAACTTTCAAACACT+TGG + chr2_4:20374104-20374123 Msa0320100:intron 25.0%
!!! ACACTTGGTAGTTTTAATTA+AGG + chr2_4:20374119-20374138 Msa0320100:intron 25.0%
!!! AAATGTGGTTATATTTTAGG+GGG + chr2_4:20374224-20374243 Msa0320100:intron 25.0%
! GTATTTAGTGCAATTTACTT+TGG + chr2_4:20374258-20374277 Msa0320100:intron 25.0%
! AGAAATCATAGATAAGATGA+GGG + chr2_4:20374328-20374347 Msa0320100:intron 25.0%
! CATAAATTTGATAGGTTGTT+TGG + chr2_4:20374470-20374489 Msa0320100:intron 25.0%
! ATATAACATTATGCAGTGTT+TGG + chr2_4:20374560-20374579 Msa0320100:intron 25.0%
! TCTTCATAGAATAGATATAC+AGG + chr2_4:20374611-20374630 Msa0320100:intron 25.0%
! AAAGAAACCAACTTTCAAAA+AGG - chr2_4:20374954-20374973 None:intergenic 25.0%
!! TTCATATTTTATTGCATTCC+TGG + chr2_4:20375109-20375128 Msa0320100:intron 25.0%
! CATGCTAAATATAAACATAC+TGG - chr2_4:20375241-20375260 None:intergenic 25.0%
! TTTATTTCAGTATCGTTAGA+TGG + chr2_4:20375319-20375338 Msa0320100:intron 25.0%
! TAATTAAAACAAGTTGTGTC+TGG + chr2_4:20375382-20375401 Msa0320100:intron 25.0%
! GTTATTTAGAAAAGAGTTGA+GGG + chr2_4:20375509-20375528 Msa0320100:CDS 25.0%
!!! TTTATTTTTAACCCAGTTGT+TGG + chr2_4:20375612-20375631 Msa0320100:CDS 25.0%
! ATGTATATGGATACTATTGT+TGG + chr2_4:20375721-20375740 Msa0320100:intron 25.0%
!!! TAAGTTGTAGGTATTTTTGT+AGG + chr2_4:20375776-20375795 Msa0320100:intron 25.0%
!!! AAGTTGTAGGTATTTTTGTA+GGG + chr2_4:20375777-20375796 Msa0320100:intron 25.0%
! GAGTTAAGTAATCTATATAC+CGG - chr2_4:20375901-20375920 None:intergenic 25.0%
! TTATAACTCATCATCAAGAA+TGG - chr2_4:20376271-20376290 None:intergenic 25.0%
! AATATGCACCTATTCAAATA+TGG + chr2_4:20376492-20376511 Msa0320100:three_prime_UTR 25.0%
ACACTCTCTATCTTCAATTT+AGG + chr2_4:20373533-20373552 Msa0320100:five_prime_UTR 30.0%
CACTCTCTATCTTCAATTTA+GGG + chr2_4:20373534-20373553 Msa0320100:five_prime_UTR 30.0%
!! ATGATTATGATGGTTCTAAC+CGG - chr2_4:20373645-20373664 None:intergenic 30.0%
!!! TGTTGTTTCAGATCTGTTTT+TGG + chr2_4:20373721-20373740 Msa0320100:intron 30.0%
!! GTTGTTTCAGATCTGTTTTT+GGG + chr2_4:20373722-20373741 Msa0320100:intron 30.0%
CATAATCTTCAGCACAAAAA+GGG - chr2_4:20373808-20373827 None:intergenic 30.0%
TCATAATCTTCAGCACAAAA+AGG - chr2_4:20373809-20373828 None:intergenic 30.0%
!! GTTATATTTTAGGGGGAAAA+AGG + chr2_4:20374231-20374250 Msa0320100:intron 30.0%
TTTAGTGCAATTTACTTTGG+AGG + chr2_4:20374261-20374280 Msa0320100:intron 30.0%
GAGAAATCATAGATAAGATG+AGG + chr2_4:20374327-20374346 Msa0320100:intron 30.0%
GCTCATTAAAACTAATAAGC+AGG - chr2_4:20374743-20374762 None:intergenic 30.0%
CTGATGATTGTGATAATTGA+TGG + chr2_4:20374827-20374846 Msa0320100:intron 30.0%
! ATTGTGATAATTGATGGCAT+TGG + chr2_4:20374833-20374852 Msa0320100:intron 30.0%
! GCACCATTCATATATGTTTT+CGG + chr2_4:20375025-20375044 Msa0320100:intron 30.0%
ACACCGAAAACATATATGAA+TGG - chr2_4:20375031-20375050 None:intergenic 30.0%
CAATTGATACACAAGTTTGT+TGG + chr2_4:20375068-20375087 Msa0320100:intron 30.0%
CGTTATTTAGAAAAGAGTTG+AGG + chr2_4:20375508-20375527 Msa0320100:CDS 30.0%
!! GATTTCCTTTGCTTTAGAAA+TGG + chr2_4:20375749-20375768 Msa0320100:intron 30.0%
TAGAATATTATTTACCCCAC+CGG + chr2_4:20375879-20375898 Msa0320100:intron 30.0%
TAAGTAATCTATATACCGGT+GGG - chr2_4:20375897-20375916 None:intergenic 30.0%
TTAAGTAATCTATATACCGG+TGG - chr2_4:20375898-20375917 None:intergenic 30.0%
ATCAATGTATGCAGAGTAAA+TGG - chr2_4:20375961-20375980 None:intergenic 30.0%
! GCATACATTGATTAGATTTG+TGG + chr2_4:20375969-20375988 Msa0320100:intron 30.0%
TGATGAAATGTTGTATCCTT+AGG + chr2_4:20376015-20376034 Msa0320100:intron 30.0%
GTTATAATTGCAATTGTAGC+TGG + chr2_4:20376284-20376303 Msa0320100:exon 30.0%
TGTAGCTGGTATACTATAAT+AGG + chr2_4:20376298-20376317 Msa0320100:three_prime_UTR 30.0%
TTGAATAGGTGCATATTAGA+TGG - chr2_4:20376489-20376508 None:intergenic 30.0%
! ATTTTATTAGGTACCAAACC+AGG - chr2_4:20376600-20376619 None:intergenic 30.0%
!!! CCATGTTTTGGTGGAAAATT+CGG - chr2_4:20373562-20373581 None:intergenic 35.0%
! ATGAATCAGAGTCCATGTTT+TGG - chr2_4:20373574-20373593 None:intergenic 35.0%
AAAACATGGACTCTGATTCA+TGG + chr2_4:20373573-20373592 Msa0320100:exon 35.0%
!!! GGATTCGCTACTTTTAAGAT+GGG - chr2_4:20374398-20374417 None:intergenic 35.0%
CATCTTAAAAGTAGCGAATC+CGG + chr2_4:20374397-20374416 Msa0320100:intron 35.0%
CATACTAACTTTCCCATATC+CGG - chr2_4:20374419-20374438 None:intergenic 35.0%
TAGTATGAGTTTGTGTTGAG+TGG + chr2_4:20374432-20374451 Msa0320100:intron 35.0%
CTGTTCTACCAATACTTGTT+TGG + chr2_4:20374692-20374711 Msa0320100:intron 35.0%
CTTGAACACCAAACAAGTAT+TGG - chr2_4:20374703-20374722 None:intergenic 35.0%
GACAAAGACTGACTAAAACA+TGG - chr2_4:20374765-20374784 None:intergenic 35.0%
!!! GGTTGGTGTTTCTTTGTTTT+TGG + chr2_4:20374794-20374813 Msa0320100:intron 35.0%
!!! TGGCATTGGTTATACTTTTC+AGG + chr2_4:20374847-20374866 Msa0320100:intron 35.0%
GAAAAACTTTGCATGTTGAG+TGG - chr2_4:20374924-20374943 None:intergenic 35.0%
! TTGCAACAAAGTATCAGGTT+CGG - chr2_4:20375589-20375608 None:intergenic 35.0%
! AACGATTGCAACAAAGTATC+AGG - chr2_4:20375594-20375613 None:intergenic 35.0%
TTTCGAGCTATCGTTTACTA+TGG - chr2_4:20375682-20375701 None:intergenic 35.0%
! TTCGTGGAAAGGTATGTATA+TGG + chr2_4:20375708-20375727 Msa0320100:intron 35.0%
!! AGCATCCATTTCTAAAGCAA+AGG - chr2_4:20375757-20375776 None:intergenic 35.0%
AGAAATGGATGCTAAGTTGT+AGG + chr2_4:20375764-20375783 Msa0320100:intron 35.0%
AAGTAATCTATATACCGGTG+GGG - chr2_4:20375896-20375915 None:intergenic 35.0%
AATGTATGCAGAGTAAATGG+CGG - chr2_4:20375958-20375977 None:intergenic 35.0%
! ATTTGTGGACACTTTGTTTG+AGG + chr2_4:20375984-20376003 Msa0320100:intron 35.0%
GTATCCTTAGGAATAATGTC+TGG + chr2_4:20376027-20376046 Msa0320100:intron 35.0%
GAAACCAGACATTATTCCTA+AGG - chr2_4:20376034-20376053 None:intergenic 35.0%
CTATTACAGTTCAAGTCACA+TGG - chr2_4:20376056-20376075 None:intergenic 35.0%
! TACTGTCAGACTACATGTTT+TGG - chr2_4:20376152-20376171 None:intergenic 35.0%
TAACTCATCATCAAGAATGG+TGG - chr2_4:20376268-20376287 None:intergenic 35.0%
TGGTATACTATAATAGGAGC+AGG + chr2_4:20376304-20376323 Msa0320100:three_prime_UTR 35.0%
TAAGGGGACCATATTTGAAT+AGG - chr2_4:20376503-20376522 None:intergenic 35.0%
TAGTGTAGCAGCTGAAATAA+GGG - chr2_4:20376520-20376539 None:intergenic 35.0%
CTACACTAGACTGACATAAT+TGG + chr2_4:20376532-20376551 Msa0320100:three_prime_UTR 35.0%
GGCTAACATAAAAAAGACTC+TGG + chr2_4:20376553-20376572 Msa0320100:three_prime_UTR 35.0%
! CCGAATTTTCCACCAAAACA+TGG + chr2_4:20373559-20373578 Msa0320100:exon 40.0%
!! AATCAGAGTCCATGTTTTGG+TGG - chr2_4:20373571-20373590 None:intergenic 40.0%
AACCGGATCGAGAATAGTAA+CGG - chr2_4:20373628-20373647 None:intergenic 40.0%
!!! GTTTCAGATCTGTTTTTGGG+TGG + chr2_4:20373725-20373744 Msa0320100:intron 40.0%
!! TGGTGGTGGTGATGATTTAA+GGG + chr2_4:20373769-20373788 Msa0320100:CDS 40.0%
ATCCTCTTCAAGCTAACACT+GGG + chr2_4:20373864-20373883 Msa0320100:CDS 40.0%
!! ATTTTAGGGGGAAAAAGGCT+TGG + chr2_4:20374236-20374255 Msa0320100:intron 40.0%
!!! CGGATTCGCTACTTTTAAGA+TGG - chr2_4:20374399-20374418 None:intergenic 40.0%
AAAAGTAGCGAATCCGGATA+TGG + chr2_4:20374403-20374422 Msa0320100:intron 40.0%
AAAGTAGCGAATCCGGATAT+GGG + chr2_4:20374404-20374423 Msa0320100:intron 40.0%
TCAGTCTTTGTCCATTGTCA+TGG + chr2_4:20374773-20374792 Msa0320100:intron 40.0%
TCTTTGTCCATTGTCATGGT+TGG + chr2_4:20374777-20374796 Msa0320100:intron 40.0%
AGAAACACCAACCATGACAA+TGG - chr2_4:20374787-20374806 None:intergenic 40.0%
! TGCACGTAAACTTCTGGTTA+TGG - chr2_4:20375450-20375469 None:intergenic 40.0%
AAGTTTACGTGCAGCGTAAA+AGG + chr2_4:20375457-20375476 Msa0320100:CDS 40.0%
! CAAAGTATCAGGTTCGGAAT+TGG - chr2_4:20375583-20375602 None:intergenic 40.0%
GTTTACTATGGCAGCTTCAA+TGG - chr2_4:20375670-20375689 None:intergenic 40.0%
TAGCTCGAAAGATGATTTCG+TGG + chr2_4:20375692-20375711 Msa0320100:CDS 40.0%
CGAAAGATGATTTCGTGGAA+AGG + chr2_4:20375697-20375716 Msa0320100:CDS 40.0%
ATGTATGCAGAGTAAATGGC+GGG - chr2_4:20375957-20375976 None:intergenic 40.0%
ATGTAGTCTGACAGTAGCTA+TGG + chr2_4:20376156-20376175 Msa0320100:intron 40.0%
! GAAGGTTTGATTTCGTGCAA+GGG + chr2_4:20376232-20376251 Msa0320100:CDS 40.0%
TTCATTCGAGTGTTACAGAG+TGG + chr2_4:20376348-20376367 Msa0320100:three_prime_UTR 40.0%
AGTGTAGCAGCTGAAATAAG+GGG - chr2_4:20376519-20376538 None:intergenic 40.0%
CTAGTGTAGCAGCTGAAATA+AGG - chr2_4:20376521-20376540 None:intergenic 40.0%
! GGAAATGATGATGCTGAACC+TGG + chr2_4:20373746-20373765 Msa0320100:CDS 45.0%
! AATGATGATGCTGAACCTGG+TGG + chr2_4:20373749-20373768 Msa0320100:CDS 45.0%
!! GTGGTGGTGGTGATGATTTA+AGG + chr2_4:20373768-20373787 Msa0320100:CDS 45.0%
CATCCTCTTCAAGCTAACAC+TGG + chr2_4:20373863-20373882 Msa0320100:CDS 45.0%
TCCTCTTCAAGCTAACACTG+GGG + chr2_4:20373865-20373884 Msa0320100:CDS 45.0%
TTACGCTGCACGTAAACTTC+TGG - chr2_4:20375456-20375475 None:intergenic 45.0%
TTTACGTGCAGCGTAAAAGG+AGG + chr2_4:20375460-20375479 Msa0320100:CDS 45.0%
TTACGTGCAGCGTAAAAGGA+GGG + chr2_4:20375461-20375480 Msa0320100:CDS 45.0%
AGAAAAGAGTTGAGGGAAGC+AGG + chr2_4:20375516-20375535 Msa0320100:CDS 45.0%
GCAGGATTGCATTCTCTTCT+TGG + chr2_4:20375534-20375553 Msa0320100:CDS 45.0%
GGATTGCATTCTCTTCTTGG+AGG + chr2_4:20375537-20375556 Msa0320100:CDS 45.0%
AGTATCAGGTTCGGAATTGG+AGG - chr2_4:20375580-20375599 None:intergenic 45.0%
ATCGAGTAGAGAAGACACGA+AGG + chr2_4:20376214-20376233 Msa0320100:CDS 45.0%
! CGAAGGTTTGATTTCGTGCA+AGG + chr2_4:20376231-20376250 Msa0320100:CDS 45.0%
!! AGGTGCATGCACTGCTTTTA+GGG - chr2_4:20376580-20376599 None:intergenic 45.0%
!!! TAATAAAAATTGTATTTTTA+AGG + chr2_4:20373946-20373965 Msa0320100:intron 5.0%
CGCCGTTACTATTCTCGATC+CGG + chr2_4:20373623-20373642 Msa0320100:CDS 50.0%
AAATCATCACCACCACCACC+AGG - chr2_4:20373767-20373786 None:intergenic 50.0%
! ACCCCAGTGTTAGCTTGAAG+AGG - chr2_4:20373869-20373888 None:intergenic 50.0%
TCTTCAAGCTAACACTGGGG+TGG + chr2_4:20373868-20373887 Msa0320100:intron 50.0%
CTTCAAGCTAACACTGGGGT+GGG + chr2_4:20373869-20373888 Msa0320100:intron 50.0%
! TTTCAGGTGTGTCCTGCTTG+TGG + chr2_4:20374863-20374882 Msa0320100:intron 50.0%
TTCAGGTGTGTCCTGCTTGT+GGG + chr2_4:20374864-20374883 Msa0320100:intron 50.0%
TCCTGCTTGTGGGCAAAAAG+TGG + chr2_4:20374874-20374893 Msa0320100:CDS 50.0%
CCTGCTTGTGGGCAAAAAGT+GGG + chr2_4:20374875-20374894 Msa0320100:CDS 50.0%
CTGCTTGTGGGCAAAAAGTG+GGG + chr2_4:20374876-20374895 Msa0320100:CDS 50.0%
TTGTGGGCAAAAAGTGGGGA+TGG + chr2_4:20374880-20374899 Msa0320100:CDS 50.0%
CGTAAAAGGAGGGTGAGGAA+AGG + chr2_4:20375471-20375490 Msa0320100:CDS 50.0%
TTCGGAATTGGAGGAAGCTG+TGG - chr2_4:20375571-20375590 None:intergenic 50.0%
CAGCTTCGTCACCAACAACT+GGG - chr2_4:20375626-20375645 None:intergenic 50.0%
ACAGCTTCGTCACCAACAAC+TGG - chr2_4:20375627-20375646 None:intergenic 50.0%
! AAATGGCGGGAACATGCATC+CGG - chr2_4:20375944-20375963 None:intergenic 50.0%
TCGTCGGAAAGCTGTACTTG+TGG - chr2_4:20376192-20376211 None:intergenic 50.0%
ACAAGTACAGCTTTCCGACG+AGG + chr2_4:20376191-20376210 Msa0320100:CDS 50.0%
CTTCTCTACTCGATCCTCGT+CGG - chr2_4:20376208-20376227 None:intergenic 50.0%
CAGAGTGGCAGTAGCTAGAT+CGG + chr2_4:20376363-20376382 Msa0320100:three_prime_UTR 50.0%
!! CAGGTGCATGCACTGCTTTT+AGG - chr2_4:20376581-20376600 None:intergenic 50.0%
CTAAAAGCAGTGCATGCACC+TGG + chr2_4:20376579-20376598 Msa0320100:three_prime_UTR 50.0%
GATGATGCTGAACCTGGTGG+TGG + chr2_4:20373752-20373771 Msa0320100:CDS 55.0%
!!! CCCACTTTTTGCCCACAAGC+AGG - chr2_4:20374878-20374897 None:intergenic 55.0%
TGCAGCGTAAAAGGAGGGTG+AGG + chr2_4:20375466-20375485 Msa0320100:CDS 55.0%
AGCAGTGCATGCACCTGGTT+TGG + chr2_4:20376584-20376603 Msa0320100:three_prime_UTR 55.0%
!! GATGCTGAACCTGGTGGTGG+TGG + chr2_4:20373755-20373774 Msa0320100:CDS 60.0%
AGGAGCAGGAGCTGATCGCG+AGG + chr2_4:20376318-20376337 Msa0320100:three_prime_UTR 65.0%
GGAGCAGGAGCTGATCGCGA+GGG + chr2_4:20376319-20376338 Msa0320100:three_prime_UTR 65.0%
CAGGAGCTGATCGCGAGGGA+GGG + chr2_4:20376323-20376342 Msa0320100:three_prime_UTR 65.0%
GCAGGAGCTGATCGCGAGGG+AGG + chr2_4:20376322-20376341 Msa0320100:three_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 20373469 20376628 20373469 ID=Msa0320100;Name=Msa0320100
chr2_4 mRNA 20373469 20376628 20373469 ID=Msa0320100-mRNA-1;Parent=Msa0320100;Name=Msa0320100-mRNA-1;_AED=0.19;_eAED=0.19;_QI=109|0.75|0.6|1|1|1|5|338|228
chr2_4 exon 20373469 20373644 20373469 ID=Msa0320100-mRNA-1:exon:7482;Parent=Msa0320100-mRNA-1
chr2_4 exon 20373732 20373886 20373732 ID=Msa0320100-mRNA-1:exon:7483;Parent=Msa0320100-mRNA-1
chr2_4 exon 20374869 20374965 20374869 ID=Msa0320100-mRNA-1:exon:7484;Parent=Msa0320100-mRNA-1
chr2_4 exon 20375457 20375718 20375457 ID=Msa0320100-mRNA-1:exon:7485;Parent=Msa0320100-mRNA-1
chr2_4 exon 20376185 20376628 20376185 ID=Msa0320100-mRNA-1:exon:7486;Parent=Msa0320100-mRNA-1
chr2_4 five_prime_UTR 20373469 20373577 20373469 ID=Msa0320100-mRNA-1:five_prime_utr;Parent=Msa0320100-mRNA-1
chr2_4 CDS 20373578 20373644 20373578 ID=Msa0320100-mRNA-1:cds;Parent=Msa0320100-mRNA-1
chr2_4 CDS 20373732 20373886 20373732 ID=Msa0320100-mRNA-1:cds;Parent=Msa0320100-mRNA-1
chr2_4 CDS 20374869 20374965 20374869 ID=Msa0320100-mRNA-1:cds;Parent=Msa0320100-mRNA-1
chr2_4 CDS 20375457 20375718 20375457 ID=Msa0320100-mRNA-1:cds;Parent=Msa0320100-mRNA-1
chr2_4 CDS 20376185 20376290 20376185 ID=Msa0320100-mRNA-1:cds;Parent=Msa0320100-mRNA-1
chr2_4 three_prime_UTR 20376291 20376628 20376291 ID=Msa0320100-mRNA-1:three_prime_utr;Parent=Msa0320100-mRNA-1
Gene Sequence

>Msa0320100

ATGGACTCTGATTCATGGATCTCTTCTCGTCTTTCTAACTCTTCACGCCGTTACTATTCTCGATCCGATCTGTTTTTGGGTGGAAATGATGATGCTGAACCTGGTGGTGGTGGTGATGATTTAAGGGCTGAATATCTTTGCCCTTTTTGTGCTGAAGATTATGATGTTGTTTCTCTTTGTTGTCACATTGATGAAGAACATCCTCTTCAAGCTAACACTGGGGTGTGTCCTGCTTGTGGGCAAAAAGTGGGGATGGATCTTGTTGCACATATTACCACTCAACATGCAAAGTTTTTCAAAATATCCTTTTTGAAAGTTGAAGTTTACGTGCAGCGTAAAAGGAGGGTGAGGAAAGGAGTCACTAACTCAACGTTATTTAGAAAAGAGTTGAGGGAAGCAGGATTGCATTCTCTTCTTGGAGGTTCTTCGTCCACAGCTTCCTCCAATTCCGAACCTGATACTTTGTTGCAATCGTTTATTTTTAACCCAGTTGTTGGTGACGAAGCTGTGAGCGAACAATCTAATTCTTCCATTGAAGCTGCCATAGTAAACGATAGCTCGAAAGATGATTTCGTGGAAAGAAAACCACAAGTACAGCTTTCCGACGAGGATCGAGTAGAGAAGACACGAAGGTTTGATTTCGTGCAAGGGCTGCTGATGTCCACCATTCTTGATGATGAGTTATAA

Protein sequence

>Msa0320100

MDSDSWISSRLSNSSRRYYSRSDLFLGGNDDAEPGGGGDDLRAEYLCPFCAEDYDVVSLCCHIDEEHPLQANTGVCPACGQKVGMDLVAHITTQHAKFFKISFLKVEVYVQRKRRVRKGVTNSTLFRKELREAGLHSLLGGSSSTASSNSEPDTLLQSFIFNPVVGDEAVSEQSNSSIEAAIVNDSSKDDFVERKPQVQLSDEDRVEKTRRFDFVQGLLMSTILDDEL*