AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0971020


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0971020 MtrunA17_Chr6g0450171 89.714 175 1 1 1 158 1 175 4.59e-113 318
Msa0971020 MtrunA17_Chr1g0194801 29.070 172 81 6 1 146 1 157 5.19e-16 70.9
Msa0971020 MtrunA17_Chr4g0001641 48.333 60 29 1 86 145 8 65 1.10e-14 65.1
Msa0971020 MtrunA17_Chr1g0192651 27.811 169 95 5 3 154 6 164 6.51e-14 65.5
Msa0971020 MtrunA17_Chr5g0427291 48.333 60 29 1 86 145 113 170 7.06e-14 65.9
Msa0971020 MtrunA17_Chr1g0195661 25.316 158 90 4 8 146 14 162 1.91e-13 64.3
Msa0971020 MtrunA17_Chr1g0176311 43.396 53 30 0 93 145 129 181 8.94e-13 63.2
Msa0971020 MtrunA17_Chr5g0433951 28.571 147 77 4 24 145 14 157 9.82e-13 62.4
Msa0971020 MtrunA17_Chr1g0176321 41.509 53 31 0 93 145 116 168 3.86e-12 60.8
Msa0971020 MtrunA17_Chr4g0032261 42.623 61 35 0 91 151 103 163 1.16e-11 59.7
Msa0971020 MtrunA17_Chr4g0008801 38.095 63 39 0 91 153 103 165 1.28e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0971020 AT5G14680.1 65.143 175 44 1 1 158 1 175 1.55e-81 238
Msa0971020 AT3G01520.1 66.286 175 42 1 1 158 1 175 3.23e-81 238
Msa0971020 AT3G11930.2 28.994 169 81 6 7 145 34 193 9.08e-16 71.6
Msa0971020 AT3G58450.1 50.000 60 28 1 86 145 131 188 2.71e-15 70.5
Msa0971020 AT3G58450.2 50.000 60 28 1 86 145 124 181 3.33e-15 70.1
Msa0971020 AT3G11930.4 28.235 170 82 6 7 145 34 194 1.69e-14 68.2
Msa0971020 AT3G11930.1 36.082 97 45 2 66 145 96 192 1.97e-14 67.8
Msa0971020 AT1G68300.1 26.061 165 84 5 7 148 11 160 5.82e-14 65.9
Msa0971020 AT3G62550.1 44.828 58 32 0 93 150 104 161 1.66e-13 64.7
Msa0971020 AT1G09740.2 40.845 71 42 0 81 151 100 170 2.63e-12 61.6
Msa0971020 AT1G09740.1 40.845 71 42 0 81 151 100 170 2.63e-12 61.6
Msa0971020 AT3G53990.1 41.429 70 39 1 78 147 92 159 4.00e-12 60.8
Msa0971020 AT3G03270.2 40.351 57 34 0 91 147 103 159 9.85e-11 57.4

Find 44 sgRNAs with CRISPR-Local

Find 244 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACATTGTTACGAATGATTT+TGG 0.101569 6_4:+2671638 None:intergenic
CTTGCATCTACCAAAGATTT+TGG 0.133667 6_4:+2667334 None:intergenic
CTCATTCAATATCACTTCTT+TGG 0.192686 6_4:+2668582 None:intergenic
ATGCATGAACCATATCATTT+TGG 0.239322 6_4:-2667361 Msa0971020:three_prime_UTR
TTTGGCCTGCCAAAATGATA+TGG 0.315363 6_4:+2667352 None:intergenic
TCATTCAATATCACTTCTTT+GGG 0.324923 6_4:+2668583 None:intergenic
TCGAAATACTAGTCATCAAC+AGG 0.355011 6_4:+2667667 None:intergenic
AACTCGTTCTCTTCTTCAAA+TGG 0.395053 6_4:+2671788 None:intergenic
GTTGTTGGAAGCAGAGGTCT+TGG 0.398274 6_4:-2668532 Msa0971020:CDS
CTTCCAACAACTAGTAAATC+TGG 0.412953 6_4:+2668544 None:intergenic
CTGCAGACAGATACAAATAA+AGG 0.420107 6_4:+2667495 None:intergenic
GCACCTTTGCTACTGATTGA+AGG 0.436887 6_4:+2671678 None:intergenic
TAATATAAATAAATAAGGTA+TGG 0.448150 6_4:-2671893 None:intergenic
GATATTGAATGAGGTGAAAC+GGG 0.455961 6_4:-2668572 Msa0971020:CDS
TGATATTGAATGAGGTGAAA+CGG 0.457358 6_4:-2668573 Msa0971020:CDS
CGTCCAGATTTACTAGTTGT+TGG 0.459311 6_4:-2668547 Msa0971020:CDS
GGCTAGAGGGACTCATCTGC+TGG 0.479989 6_4:-2669043 Msa0971020:CDS
AGGAACTGACCGTCTTCATC+AGG 0.480141 6_4:+2671579 None:intergenic
ATATAGATTACCTGTGTTTG+TGG 0.485118 6_4:-2667638 Msa0971020:three_prime_UTR
GAACATGAAACAGCAGGAAA+AGG 0.486725 6_4:-2669064 Msa0971020:CDS
GTAGCAAAGGTGCTTTCGAT+TGG 0.487042 6_4:-2671668 Msa0971020:CDS
GAATCAACACGAGTTATGAT+TGG 0.488228 6_4:-2671735 Msa0971020:CDS
GTGGATAGTATCTATGCATC+AGG 0.492226 6_4:-2669099 Msa0971020:CDS
TAGTCATCAACAGGGTCCCT+TGG 0.510016 6_4:+2667676 None:intergenic
GATGACTAGTATTTCGACAT+TGG 0.510202 6_4:-2667661 Msa0971020:exon
TTACTAGTTGTTGGAAGCAG+AGG 0.512564 6_4:-2668538 Msa0971020:CDS
TTGCTACTGATTGAAGGATG+TGG 0.522286 6_4:+2671684 None:intergenic
GGTAGATGCAAGATTGCTCA+TGG 0.527392 6_4:-2667323 Msa0971020:three_prime_UTR
TTGCGTTTGATAGTCATGAC+AGG 0.533981 6_4:+2667712 None:intergenic
CAAAGAAGTGATATTGAATG+AGG 0.559803 6_4:-2668581 Msa0971020:CDS
CTTTAAGAACATGAAACAGC+AGG 0.564406 6_4:-2669070 Msa0971020:CDS
TACAAAGCTATCTGCTTGTG+TGG 0.567447 6_4:-2667449 Msa0971020:three_prime_UTR
GTGAACGAGTCAAGCTTGAA+AGG 0.573861 6_4:-2671711 Msa0971020:CDS
CATCCTTCAATCAGTAGCAA+AGG 0.586643 6_4:-2671681 Msa0971020:CDS
TGTATGCAGTTGTTCAGTGT+AGG 0.606294 6_4:-2667571 Msa0971020:three_prime_UTR
AACAGCAGGAAAAGGCTAGA+GGG 0.609669 6_4:-2669056 Msa0971020:CDS
TGCGTTTGATAGTCATGACA+GGG 0.634272 6_4:+2667713 None:intergenic
AAACAGCAGGAAAAGGCTAG+AGG 0.635603 6_4:-2669057 Msa0971020:CDS
GTTCAAGTTCCTGATGAAGA+CGG 0.636387 6_4:-2671588 Msa0971020:intron
GCAATGCAGATGAAACTCCA+AGG 0.637395 6_4:-2667693 Msa0971020:CDS
CAGACAGATACAAATAAAGG+AGG 0.650743 6_4:+2667498 None:intergenic
CAATGCAGATGAAACTCCAA+GGG 0.667475 6_4:-2667692 Msa0971020:CDS
TCTTGTAGGTTACGATGACG+TGG 0.674991 6_4:-2669118 Msa0971020:intron
CGAAATACTAGTCATCAACA+GGG 0.682603 6_4:+2667668 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTATTTTTAAAAT+CGG + chr6_4:2670718-2670737 None:intergenic 0.0%
!!! TGCTTTTTTTTATTTTAATT+TGG + chr6_4:2667317-2667336 None:intergenic 10.0%
!!! ATTATTTTCTTATTTTTGAT+AGG + chr6_4:2669708-2669727 None:intergenic 10.0%
!! ATTCATATTTAAAAATATCA+TGG + chr6_4:2670846-2670865 None:intergenic 10.0%
!!! GTAAAAATTCTTTTTAATGA+TGG - chr6_4:2668165-2668184 Msa0971020:intron 15.0%
!!! TATTTTGATTTGTTATGTTA+GGG - chr6_4:2668313-2668332 Msa0971020:intron 15.0%
!! AAAGATCAAATAAATTCAAA+TGG + chr6_4:2668651-2668670 None:intergenic 15.0%
!!! TGTTATAATGTTCTTTTTAA+CGG - chr6_4:2669199-2669218 Msa0971020:intron 15.0%
!! TGGAAAATATGAAAAAAATA+TGG + chr6_4:2669918-2669937 None:intergenic 15.0%
!! TATTATACAAAGCAAAATAA+AGG - chr6_4:2670001-2670020 Msa0971020:intron 15.0%
!! ATTATACAAAGCAAAATAAA+GGG - chr6_4:2670002-2670021 Msa0971020:intron 15.0%
!! CTAAATATTTATACATTTGT+AGG - chr6_4:2670539-2670558 Msa0971020:intron 15.0%
!!! TAAATATGGAATGAATTTTT+TGG - chr6_4:2670892-2670911 Msa0971020:intron 15.0%
!!! CAGTTATGTTAATTAATTTT+AGG - chr6_4:2670988-2671007 Msa0971020:intron 15.0%
!!! AAAATTCTTTTTAATGATGG+TGG - chr6_4:2668168-2668187 Msa0971020:intron 20.0%
!!! GTATTTTGATTTGTTATGTT+AGG - chr6_4:2668312-2668331 Msa0971020:intron 20.0%
!! CACAAATTGAATTGAATAAA+AGG + chr6_4:2669106-2669125 None:intergenic 20.0%
!! TTTATTCAATTCAATTTGTG+AGG - chr6_4:2669106-2669125 Msa0971020:CDS 20.0%
!! TTATTCAATTCAATTTGTGA+GGG - chr6_4:2669107-2669126 Msa0971020:CDS 20.0%
!!! GTTATAATGTTCTTTTTAAC+GGG - chr6_4:2669200-2669219 Msa0971020:intron 20.0%
!! ATAATGAATAAAGATTACAC+AGG + chr6_4:2669568-2669587 None:intergenic 20.0%
!!! TAGGCAATCTTTTATTAAAT+GGG + chr6_4:2669689-2669708 None:intergenic 20.0%
!!! ATAGGCAATCTTTTATTAAA+TGG + chr6_4:2669690-2669709 None:intergenic 20.0%
!! TAGATTAAGTTCAAAGTAAA+GGG + chr6_4:2669960-2669979 None:intergenic 20.0%
!! TTAGATTAAGTTCAAAGTAA+AGG + chr6_4:2669961-2669980 None:intergenic 20.0%
!!! ATGTATAAATATTTAGCTTG+TGG + chr6_4:2670535-2670554 None:intergenic 20.0%
!!! TATTCTGAAATATGTTACTA+AGG - chr6_4:2670773-2670792 Msa0971020:intron 20.0%
!! ATGGTATGAATTCTTAAATA+TGG - chr6_4:2670878-2670897 Msa0971020:intron 20.0%
!!! AATTGTCAAACTTCTTATTT+TGG - chr6_4:2670934-2670953 Msa0971020:intron 20.0%
!!! ACTTCTTATTTTGGAAATTA+TGG - chr6_4:2670943-2670962 Msa0971020:intron 20.0%
!!! ACTACAATTAAATTGTGTTT+TGG - chr6_4:2671249-2671268 Msa0971020:intron 20.0%
! TCAGTGAAAAATCAAGAAAT+GGG - chr6_4:2667415-2667434 Msa0971020:three_prime_UTR 25.0%
!! AACATTGTTACGAATGATTT+TGG + chr6_4:2667542-2667561 None:intergenic 25.0%
! ATCACAACTCAAATCAAATA+TGG + chr6_4:2668484-2668503 None:intergenic 25.0%
! TTGTGATCTTAGTAACTATT+TGG - chr6_4:2668497-2668516 Msa0971020:intron 25.0%
!! AATAAGCTGAAAACATCTTT+TGG + chr6_4:2668575-2668594 None:intergenic 25.0%
!!! CTTATTTCTATGATCTCTTT+AGG - chr6_4:2668589-2668608 Msa0971020:CDS 25.0%
!! TTATGTCTATAAGTCCTTTT+CGG - chr6_4:2668816-2668835 Msa0971020:intron 25.0%
!! AATGTGTAACATCTTTTCAT+AGG + chr6_4:2668869-2668888 None:intergenic 25.0%
! TATGAAAAGATGTTACACAT+TGG - chr6_4:2668868-2668887 Msa0971020:intron 25.0%
! TTTAGAGAAATTGAAACATC+TGG - chr6_4:2668975-2668994 Msa0971020:intron 25.0%
!!! AGCTTGATTTGTAATTGATT+GGG - chr6_4:2669038-2669057 Msa0971020:CDS 25.0%
! AATATAAATAAATGCCTCAC+TGG + chr6_4:2669985-2670004 None:intergenic 25.0%
! TCAATAGGTGTAATGAAATT+GGG - chr6_4:2670166-2670185 Msa0971020:intron 25.0%
!! TTGTGATTTTGGATATTGTT+TGG - chr6_4:2670210-2670229 Msa0971020:intron 25.0%
! AAACAACTTAAATTCCTTGA+CGG + chr6_4:2670474-2670493 None:intergenic 25.0%
! TCATTCAATATCACTTCTTT+GGG + chr6_4:2670597-2670616 None:intergenic 25.0%
! TAAAATCGGACAATTCATAA+TGG + chr6_4:2670704-2670723 None:intergenic 25.0%
! TATGAATGTCTATTGAAGTA+TGG - chr6_4:2670859-2670878 Msa0971020:intron 25.0%
! GAATAATTAGAGAAGAAAAG+AGG - chr6_4:2671010-2671029 Msa0971020:intron 25.0%
! TTTCTACCATCAATAATAGT+CGG - chr6_4:2671224-2671243 Msa0971020:intron 25.0%
! TCTTGAAGTTTCATATATAC+TGG - chr6_4:2671308-2671327 Msa0971020:intron 25.0%
! TTCAACGAGTAACTTAATTA+CGG - chr6_4:2671360-2671379 Msa0971020:intron 25.0%
CTCAGTGAAAAATCAAGAAA+TGG - chr6_4:2667414-2667433 Msa0971020:three_prime_UTR 30.0%
!! GTTACGAATGATTTTGGAAA+CGG + chr6_4:2667536-2667555 None:intergenic 30.0%
AGAGAAAATGACGTAATTGA+AGG + chr6_4:2667774-2667793 None:intergenic 30.0%
TTGAATGTAATCACATGTGT+CGG + chr6_4:2667887-2667906 None:intergenic 30.0%
GAACATTGATAAGATTGTAG+TGG - chr6_4:2668290-2668309 Msa0971020:intron 30.0%
TTGTTATGTTAGGGAATGTT+TGG - chr6_4:2668322-2668341 Msa0971020:intron 30.0%
GAGCTTATGGAAATAGTTTA+TGG - chr6_4:2668371-2668390 Msa0971020:intron 30.0%
!!! GCTATTTTGATAAGCTATCA+TGG + chr6_4:2668437-2668456 None:intergenic 30.0%
!! CTATTTGGATTTGACTTGTA+AGG - chr6_4:2668512-2668531 Msa0971020:intron 30.0%
!! ATTTGACTTGTAAGGTTGTT+TGG - chr6_4:2668520-2668539 Msa0971020:CDS 30.0%
!! GTTACTTAGAAAGTGTTTGT+AGG - chr6_4:2668762-2668781 Msa0971020:intron 30.0%
CTTATTGCAATAAGTTCACT+GGG - chr6_4:2668839-2668858 Msa0971020:intron 30.0%
TTGAGCAAGATGCAAATAAA+TGG + chr6_4:2669001-2669020 None:intergenic 30.0%
!! GAGCTTGATTTGTAATTGAT+TGG - chr6_4:2669037-2669056 Msa0971020:CDS 30.0%
!! AAAAAGTATCGCATTTAGTG+TGG - chr6_4:2669146-2669165 Msa0971020:intron 30.0%
! TAATGTTCTTTTTAACGGGA+AGG - chr6_4:2669204-2669223 Msa0971020:intron 30.0%
ATACTTCGGATACAAACAAA+TGG + chr6_4:2669335-2669354 None:intergenic 30.0%
!! TATTGTTTGTTTGCTGTTGT+TGG - chr6_4:2669632-2669651 Msa0971020:intron 30.0%
TTTGAACACCAAATACCATA+AGG + chr6_4:2669761-2669780 None:intergenic 30.0%
TGATCAAATTCATCATCTCA+GGG + chr6_4:2669803-2669822 None:intergenic 30.0%
ATTAGGCTATAAAAAACGAG+AGG + chr6_4:2669826-2669845 None:intergenic 30.0%
!!! TCGTTTTTTATAGCCTAATG+AGG - chr6_4:2669827-2669846 Msa0971020:intron 30.0%
!!! CGTTTTTTATAGCCTAATGA+GGG - chr6_4:2669828-2669847 Msa0971020:intron 30.0%
TCTCTGTTATATCTTTCTCT+TGG - chr6_4:2669861-2669880 Msa0971020:intron 30.0%
CTCTGTTATATCTTTCTCTT+GGG - chr6_4:2669862-2669881 Msa0971020:intron 30.0%
TTATATCTTTCTCTTGGGTT+CGG - chr6_4:2669867-2669886 Msa0971020:intron 30.0%
GTCAATAGGTGTAATGAAAT+TGG - chr6_4:2670165-2670184 Msa0971020:intron 30.0%
CAATAGGTGTAATGAAATTG+GGG - chr6_4:2670167-2670186 Msa0971020:intron 30.0%
! TTCTACTCTACTTGTGATTT+TGG - chr6_4:2670199-2670218 Msa0971020:intron 30.0%
TCAAGAAAAACATGCAGTAA+AGG - chr6_4:2670405-2670424 Msa0971020:intron 30.0%
CTCATTCAATATCACTTCTT+TGG + chr6_4:2670598-2670617 None:intergenic 30.0%
CAAAGAAGTGATATTGAATG+AGG - chr6_4:2670596-2670615 Msa0971020:intron 30.0%
TGATATTGAATGAGGTGAAA+CGG - chr6_4:2670604-2670623 Msa0971020:intron 30.0%
AGCACATCATTTATCACAAT+TGG + chr6_4:2670814-2670833 None:intergenic 30.0%
!! AGTTTGTTAATGAGTGGTTA+TGG - chr6_4:2671045-2671064 Msa0971020:intron 30.0%
! GTTTGTTAATGAGTGGTTAT+GGG - chr6_4:2671046-2671065 Msa0971020:intron 30.0%
TAGTAACCGACTATTATTGA+TGG + chr6_4:2671233-2671252 None:intergenic 30.0%
TGTAAATTTCTGTCAGAAAC+TGG + chr6_4:2671277-2671296 None:intergenic 30.0%
ACTTAATTACGGTCAATAAC+CGG - chr6_4:2671371-2671390 Msa0971020:intron 30.0%
ATATAGATTACCTGTGTTTG+TGG - chr6_4:2671539-2671558 Msa0971020:intron 30.0%
! ATGCATGAACCATATCATTT+TGG - chr6_4:2671816-2671835 Msa0971020:five_prime_UTR 30.0%
AACTCGTTCTCTTCTTCAAA+TGG + chr6_4:2667392-2667411 None:intergenic 35.0%
GAATCAACACGAGTTATGAT+TGG - chr6_4:2667442-2667461 Msa0971020:three_prime_UTR 35.0%
! ATGGATTAAGAGAGAAAGAG+AGG + chr6_4:2667621-2667640 None:intergenic 35.0%
!! TTCTGATCAAAGAAGTGTCT+AGG - chr6_4:2667853-2667872 Msa0971020:intron 35.0%
!! TCTGATCAAAGAAGTGTCTA+GGG - chr6_4:2667854-2667873 Msa0971020:intron 35.0%
TACTACTGATATCAATGTGC+CGG - chr6_4:2667977-2667996 Msa0971020:intron 35.0%
!! TATGTGTGTGACTTTAGAAC+TGG - chr6_4:2668087-2668106 Msa0971020:intron 35.0%
! GAATGTGTCTGATGATGTAA+TGG - chr6_4:2668124-2668143 Msa0971020:intron 35.0%
! AGACTTTTTGTGAGAGCTTA+TGG - chr6_4:2668358-2668377 Msa0971020:intron 35.0%
ACATGCATATCTATATCACG+AGG - chr6_4:2668690-2668709 Msa0971020:intron 35.0%
CATGCATATCTATATCACGA+GGG - chr6_4:2668691-2668710 Msa0971020:intron 35.0%
CTTATTGCAATAAGCCGAAA+AGG + chr6_4:2668833-2668852 None:intergenic 35.0%
GCTTATTGCAATAAGTTCAC+TGG - chr6_4:2668838-2668857 Msa0971020:intron 35.0%
GTTCACAAAAATGTTGTGTG+TGG - chr6_4:2668949-2668968 Msa0971020:intron 35.0%
GATTTGTAATTGATTGGGAG+TGG - chr6_4:2669043-2669062 Msa0971020:CDS 35.0%
TCAATTTGTGAGGGTAAGAA+AGG - chr6_4:2669116-2669135 Msa0971020:intron 35.0%
GCATTTAGTGTGGTTAACAA+CGG - chr6_4:2669156-2669175 Msa0971020:intron 35.0%
GAAGGTTGTGAATTGTTTAG+AGG - chr6_4:2669222-2669241 Msa0971020:intron 35.0%
ATCCTATCAAACACCTATCT+TGG - chr6_4:2669251-2669270 Msa0971020:intron 35.0%
ACATAAACCAAGACCAAGAT+AGG + chr6_4:2669267-2669286 None:intergenic 35.0%
! AAATGGATTCAACCACCAAT+AGG + chr6_4:2669318-2669337 None:intergenic 35.0%
TTTACCAGAATGCATCCTTA+TGG - chr6_4:2669743-2669762 Msa0971020:intron 35.0%
AATACCATAAGGATGCATTC+TGG + chr6_4:2669750-2669769 None:intergenic 35.0%
GAATGCATCCTTATGGTATT+TGG - chr6_4:2669750-2669769 Msa0971020:intron 35.0%
ATCTCAGGGAATGTTGATAT+TGG + chr6_4:2669789-2669808 None:intergenic 35.0%
GTGATCAAATTCATCATCTC+AGG + chr6_4:2669804-2669823 None:intergenic 35.0%
GAAAGATACTTTCCCTCATT+AGG + chr6_4:2669843-2669862 None:intergenic 35.0%
ATGGCAAGAATGCATAAAAC+AGG + chr6_4:2669899-2669918 None:intergenic 35.0%
AGTTCAAAGTAAAGGGACAA+TGG + chr6_4:2669953-2669972 None:intergenic 35.0%
GAACTTAATCTAATCCAGTG+AGG - chr6_4:2669968-2669987 Msa0971020:intron 35.0%
TAAAGGGAACTGCAATCTAA+TGG - chr6_4:2670018-2670037 Msa0971020:intron 35.0%
ACTTGTGTTTCGTTTCTTGT+AGG - chr6_4:2670045-2670064 Msa0971020:intron 35.0%
! CTTTAAGAACATGAAACAGC+AGG - chr6_4:2670107-2670126 Msa0971020:intron 35.0%
AACTTATCCATAAGCACTAG+TGG - chr6_4:2670237-2670256 Msa0971020:intron 35.0%
! TCTTTTACCACTAGTGCTTA+TGG + chr6_4:2670247-2670266 None:intergenic 35.0%
CTAGTTTCACAGGTTATGTA+AGG + chr6_4:2670316-2670335 None:intergenic 35.0%
! GATAGAAAAGCTAGTTTCAC+AGG + chr6_4:2670326-2670345 None:intergenic 35.0%
GCTGTTCAATCTTCATCTAA+CGG + chr6_4:2670439-2670458 None:intergenic 35.0%
TTGTTTGATCTGCATCTGAT+TGG - chr6_4:2670488-2670507 Msa0971020:intron 35.0%
!! ATATTTAGCTTGTGGTCAAG+TGG + chr6_4:2670527-2670546 None:intergenic 35.0%
GATATTGAATGAGGTGAAAC+GGG - chr6_4:2670605-2670624 Msa0971020:intron 35.0%
CTTCCAACAACTAGTAAATC+TGG + chr6_4:2670636-2670655 None:intergenic 35.0%
!! TCATGCACATACTTTTGGAA+AGG + chr6_4:2670672-2670691 None:intergenic 35.0%
! AGAGATCATGCACATACTTT+TGG + chr6_4:2670677-2670696 None:intergenic 35.0%
TAGAGAAGAAAAGAGGAAAG+TGG - chr6_4:2671017-2671036 Msa0971020:intron 35.0%
!! GTGGATAGTTTGTTAATGAG+TGG - chr6_4:2671039-2671058 Msa0971020:intron 35.0%
AGAGACCAAACTCTAATTCT+TGG - chr6_4:2671073-2671092 Msa0971020:intron 35.0%
GAGACCAAACTCTAATTCTT+GGG - chr6_4:2671074-2671093 Msa0971020:intron 35.0%
CGAAATACTAGTCATCAACA+GGG + chr6_4:2671512-2671531 None:intergenic 35.0%
TCGAAATACTAGTCATCAAC+AGG + chr6_4:2671513-2671532 None:intergenic 35.0%
GATGACTAGTATTTCGACAT+TGG - chr6_4:2671516-2671535 Msa0971020:intron 35.0%
CAGACAGATACAAATAAAGG+AGG + chr6_4:2671682-2671701 None:intergenic 35.0%
CTGCAGACAGATACAAATAA+AGG + chr6_4:2671685-2671704 None:intergenic 35.0%
!! ATGAACCATATCATTTTGGC+AGG - chr6_4:2671820-2671839 Msa0971020:five_prime_UTR 35.0%
! CTTGCATCTACCAAAGATTT+TGG + chr6_4:2671846-2671865 None:intergenic 35.0%
! TTGCTACTGATTGAAGGATG+TGG + chr6_4:2667496-2667515 None:intergenic 40.0%
CATCCTTCAATCAGTAGCAA+AGG - chr6_4:2667496-2667515 Msa0971020:three_prime_UTR 40.0%
! GTTCAAGTTCCTGATGAAGA+CGG - chr6_4:2667589-2667608 Msa0971020:three_prime_UTR 40.0%
ATGTGTCAGACACTTCTGAT+CGG - chr6_4:2667718-2667737 Msa0971020:CDS 40.0%
!! TGTGACTTTAGAACTGGTTG+TGG - chr6_4:2668093-2668112 Msa0971020:intron 40.0%
AAGCTATCATGGAGAGCTTA+TGG + chr6_4:2668426-2668445 None:intergenic 40.0%
TTGTAATTGATTGGGAGTGG+AGG - chr6_4:2669046-2669065 Msa0971020:CDS 40.0%
!! TAACAACGGCTTGGTGTATT+TGG - chr6_4:2669170-2669189 Msa0971020:intron 40.0%
GGTTGTGAATTGTTTAGAGG+TGG - chr6_4:2669225-2669244 Msa0971020:intron 40.0%
GACCAAGATAGGTGTTTGAT+AGG + chr6_4:2669256-2669275 None:intergenic 40.0%
TCAAACACCTATCTTGGTCT+TGG - chr6_4:2669257-2669276 Msa0971020:intron 40.0%
!! CTTGGTCTTGGTTTATGTGT+AGG - chr6_4:2669269-2669288 Msa0971020:intron 40.0%
CGAACTTTCGATGATCCTAT+TGG - chr6_4:2669300-2669319 Msa0971020:intron 40.0%
ACTTTCGATGATCCTATTGG+TGG - chr6_4:2669303-2669322 Msa0971020:intron 40.0%
AAGGCGACGTTCAAATACTT+CGG + chr6_4:2669349-2669368 None:intergenic 40.0%
TACTCGTATCAGTTTGTGTG+CGG - chr6_4:2669400-2669419 Msa0971020:intron 40.0%
TACGTGCTCCATTTCTTTGT+TGG - chr6_4:2669484-2669503 Msa0971020:intron 40.0%
ACGTGCTCCATTTCTTTGTT+GGG - chr6_4:2669485-2669504 Msa0971020:intron 40.0%
AGTTCCACCCAACAAAGAAA+TGG + chr6_4:2669495-2669514 None:intergenic 40.0%
!! GAGATCAATTCTAGCCTTGT+CGG - chr6_4:2669519-2669538 Msa0971020:intron 40.0%
TATCTGTCAATCCTCTGTTG+TGG - chr6_4:2669589-2669608 Msa0971020:intron 40.0%
TCTTCACAATTCCACAACAG+AGG + chr6_4:2669603-2669622 None:intergenic 40.0%
GACAATGGATCACAAGTGAA+TGG + chr6_4:2669938-2669957 None:intergenic 40.0%
GTGGATAGTATCTATGCATC+AGG - chr6_4:2670078-2670097 Msa0971020:intron 40.0%
GAACATGAAACAGCAGGAAA+AGG - chr6_4:2670113-2670132 Msa0971020:intron 40.0%
TGCTGGAATACTTCGTCAAT+AGG - chr6_4:2670151-2670170 Msa0971020:intron 40.0%
TGTGAAGCATGGATAAAGCA+GGG - chr6_4:2670567-2670586 Msa0971020:intron 40.0%
CGTCCAGATTTACTAGTTGT+TGG - chr6_4:2670630-2670649 Msa0971020:intron 40.0%
TTACTAGTTGTTGGAAGCAG+AGG - chr6_4:2670639-2670658 Msa0971020:intron 40.0%
AGAAGAAAAGAGGAAAGTGG+TGG - chr6_4:2671020-2671039 Msa0971020:intron 40.0%
GTTAATGAGTGGTTATGGGA+AGG - chr6_4:2671050-2671069 Msa0971020:intron 40.0%
CTCTCCCAAGAATTAGAGTT+TGG + chr6_4:2671081-2671100 None:intergenic 40.0%
ACCAAGACTCTCGAATTTCT+TGG - chr6_4:2671101-2671120 Msa0971020:intron 40.0%
CCAAGACTCTCGAATTTCTT+GGG - chr6_4:2671102-2671121 Msa0971020:intron 40.0%
CAGAACATGACAACTCAAAC+CGG + chr6_4:2671393-2671412 None:intergenic 40.0%
!! TTTGAGTTGTCATGTTCTGC+AGG - chr6_4:2671394-2671413 Msa0971020:intron 40.0%
! TTGAGTTGTCATGTTCTGCA+GGG - chr6_4:2671395-2671414 Msa0971020:intron 40.0%
! ATGTTCTGCAGGGTTTTTGT+TGG - chr6_4:2671405-2671424 Msa0971020:intron 40.0%
! GCACGGTTAGTGAATTTTGT+TGG - chr6_4:2671427-2671446 Msa0971020:intron 40.0%
! TGCGTTTGATAGTCATGACA+GGG + chr6_4:2671467-2671486 None:intergenic 40.0%
! TTGCGTTTGATAGTCATGAC+AGG + chr6_4:2671468-2671487 None:intergenic 40.0%
CAATGCAGATGAAACTCCAA+GGG - chr6_4:2671485-2671504 Msa0971020:intron 40.0%
!! TTTTTCAGCTCCACAAACAC+AGG + chr6_4:2671552-2671571 None:intergenic 40.0%
TGTATGCAGTTGTTCAGTGT+AGG - chr6_4:2671606-2671625 Msa0971020:CDS 40.0%
TACAAAGCTATCTGCTTGTG+TGG - chr6_4:2671728-2671747 Msa0971020:CDS 40.0%
TTTGGCCTGCCAAAATGATA+TGG + chr6_4:2671828-2671847 None:intergenic 40.0%
! TTTTGGCAGGCCAAAATCTT+TGG - chr6_4:2671833-2671852 Msa0971020:five_prime_UTR 40.0%
GTGAACGAGTCAAGCTTGAA+AGG - chr6_4:2667466-2667485 Msa0971020:three_prime_UTR 45.0%
! GCACCTTTGCTACTGATTGA+AGG + chr6_4:2667502-2667521 None:intergenic 45.0%
!! GTAGCAAAGGTGCTTTCGAT+TGG - chr6_4:2667509-2667528 Msa0971020:three_prime_UTR 45.0%
GCGTCTTCGATCAGAAATGT+CGG + chr6_4:2667689-2667708 None:intergenic 45.0%
GCTCAAAGACGTCGAAAGTA+TGG - chr6_4:2669015-2669034 Msa0971020:intron 45.0%
TAGTGTGGTTAACAACGGCT+TGG - chr6_4:2669161-2669180 Msa0971020:intron 45.0%
!! AACGGCTTGGTGTATTTGGT+TGG - chr6_4:2669174-2669193 Msa0971020:intron 45.0%
ACTCGTATCAGTTTGTGTGC+GGG - chr6_4:2669401-2669420 Msa0971020:intron 45.0%
TGCTCCATTTCTTTGTTGGG+TGG - chr6_4:2669488-2669507 Msa0971020:intron 45.0%
TCTTTGTTGGGTGGAACTGT+AGG - chr6_4:2669497-2669516 Msa0971020:intron 45.0%
TCTTGTAGGTTACGATGACG+TGG - chr6_4:2670059-2670078 Msa0971020:intron 45.0%
AAACAGCAGGAAAAGGCTAG+AGG - chr6_4:2670120-2670139 Msa0971020:intron 45.0%
AACAGCAGGAAAAGGCTAGA+GGG - chr6_4:2670121-2670140 Msa0971020:intron 45.0%
GCTCATAATTTCGACCGTCA+AGG - chr6_4:2670457-2670476 Msa0971020:intron 45.0%
CTGCTTTATCCATGCTTCAC+AGG + chr6_4:2670568-2670587 None:intergenic 45.0%
CTGTGAAGCATGGATAAAGC+AGG - chr6_4:2670566-2670585 Msa0971020:intron 45.0%
CCCAAGAAATTCGAGAGTCT+TGG + chr6_4:2671105-2671124 None:intergenic 45.0%
GACTCTCGAATTTCTTGGGT+AGG - chr6_4:2671106-2671125 Msa0971020:intron 45.0%
GCAATGCAGATGAAACTCCA+AGG - chr6_4:2671484-2671503 Msa0971020:intron 45.0%
GGTAGATGCAAGATTGCTCA+TGG - chr6_4:2671854-2671873 Msa0971020:five_prime_UTR 45.0%
!! ATCAAAATTAAAAAATAAAA+TGG + chr6_4:2667640-2667659 None:intergenic 5.0%
AGGAACTGACCGTCTTCATC+AGG + chr6_4:2667601-2667620 None:intergenic 50.0%
TGTCAGACACTTCTGATCGG+CGG - chr6_4:2667721-2667740 Msa0971020:CDS 50.0%
CGACACAGACACACTAACAC+CGG + chr6_4:2667999-2668018 None:intergenic 50.0%
! CGGTGTTAGTGTGTCTGTGT+CGG - chr6_4:2667997-2668016 Msa0971020:intron 50.0%
CGACTACCAACAGTGCAAGA+AGG + chr6_4:2669368-2669387 None:intergenic 50.0%
TATCAGTTTGTGTGCGGGTC+TGG - chr6_4:2669406-2669425 Msa0971020:intron 50.0%
TTTGCAGGGAGCTGAACTGA+AGG - chr6_4:2669431-2669450 Msa0971020:intron 50.0%
TTGCAGGGAGCTGAACTGAA+GGG - chr6_4:2669432-2669451 Msa0971020:intron 50.0%
GAGCTGAACTGAAGGGTTGT+GGG - chr6_4:2669439-2669458 Msa0971020:intron 50.0%
AGCTGAACTGAAGGGTTGTG+GGG - chr6_4:2669440-2669459 Msa0971020:intron 50.0%
!! AATTCTAGCCTTGTCGGCGA+TGG - chr6_4:2669525-2669544 Msa0971020:intron 50.0%
TGTAGGTGACCTGTGAAGCA+TGG - chr6_4:2670556-2670575 Msa0971020:intron 50.0%
GTTGTTGGAAGCAGAGGTCT+TGG - chr6_4:2670645-2670664 Msa0971020:intron 50.0%
! CTGCAGGGTTTTTGTTGGCA+CGG - chr6_4:2671410-2671429 Msa0971020:intron 50.0%
TAGTCATCAACAGGGTCCCT+TGG + chr6_4:2671504-2671523 None:intergenic 50.0%
ACGTCGCCTTCTTGCACTGT+TGG - chr6_4:2669359-2669378 Msa0971020:intron 55.0%
!! CTTGCACTGTTGGTAGTCGC+TGG - chr6_4:2669369-2669388 Msa0971020:intron 55.0%
GGAGCTGAACTGAAGGGTTG+TGG - chr6_4:2669438-2669457 Msa0971020:intron 55.0%
! GCGATGGTCGTGCTGACAAT+TGG - chr6_4:2669541-2669560 Msa0971020:intron 55.0%
TGGGAGTGGAGGCTGAAGAC+TGG - chr6_4:2669057-2669076 Msa0971020:CDS 60.0%
GGGAGTGGAGGCTGAAGACT+GGG - chr6_4:2669058-2669077 Msa0971020:CDS 60.0%
GTGGAGGCTGAAGACTGGGA+TGG - chr6_4:2669062-2669081 Msa0971020:CDS 60.0%
TGTGCGGGTCTGGTGTTTGC+AGG - chr6_4:2669416-2669435 Msa0971020:intron 60.0%
GTGCGGGTCTGGTGTTTGCA+GGG - chr6_4:2669417-2669436 Msa0971020:intron 60.0%
GAACTGAAGGGTTGTGGGGC+TGG - chr6_4:2669444-2669463 Msa0971020:intron 60.0%
GGCTAGAGGGACTCATCTGC+TGG - chr6_4:2670134-2670153 Msa0971020:intron 60.0%
CAGCACGACCATCGCCGACA+AGG + chr6_4:2669536-2669555 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 2667296 2671903 2667296 ID=Msa0971020;Name=Msa0971020
chr6_4 mRNA 2667296 2671903 2667296 ID=Msa0971020-mRNA-1;Parent=Msa0971020;Name=Msa0971020-mRNA-1;_AED=0.10;_eAED=0.10;_QI=137|0.66|0.5|1|1|1|4|379|158
chr6_4 exon 2667296 2667783 2667296 ID=Msa0971020-mRNA-1:exon:1336;Parent=Msa0971020-mRNA-1
chr6_4 exon 2668520 2668611 2668520 ID=Msa0971020-mRNA-1:exon:1335;Parent=Msa0971020-mRNA-1
chr6_4 exon 2669035 2669132 2669035 ID=Msa0971020-mRNA-1:exon:1334;Parent=Msa0971020-mRNA-1
chr6_4 exon 2671589 2671903 2671589 ID=Msa0971020-mRNA-1:exon:1333;Parent=Msa0971020-mRNA-1
chr6_4 five_prime_UTR 2671767 2671903 2671767 ID=Msa0971020-mRNA-1:five_prime_utr;Parent=Msa0971020-mRNA-1
chr6_4 CDS 2671589 2671766 2671589 ID=Msa0971020-mRNA-1:cds;Parent=Msa0971020-mRNA-1
chr6_4 CDS 2669035 2669132 2669035 ID=Msa0971020-mRNA-1:cds;Parent=Msa0971020-mRNA-1
chr6_4 CDS 2668520 2668611 2668520 ID=Msa0971020-mRNA-1:cds;Parent=Msa0971020-mRNA-1
chr6_4 CDS 2667675 2667783 2667675 ID=Msa0971020-mRNA-1:cds;Parent=Msa0971020-mRNA-1
chr6_4 three_prime_UTR 2667296 2667674 2667296 ID=Msa0971020-mRNA-1:three_prime_utr;Parent=Msa0971020-mRNA-1
Gene Sequence

>Msa0971020

ATGGGAGAAGAATCAACACGAGTTATGATTGGAGTGAACGAGTCAAGCTTGAAAGGTTATCCACATCCTTCAATCAGTAGCAAAGGTGCTTTCGATTGGACCGTTTCCAAAATCATTCGTAACAATGTTTCTGCTTTTCATCTTCTTTTTCTTCATGTTCAAGTTCCTGATGAAGACGGTTACGATGACGTGGATAGTATCTATGCATCAGGTGAAGACTTTAAGAACATGAAACAGCAGGAAAAGGCTAGAGGGACTCATCTGCTGGAATACTTCGGTGATCCCAAAGAAGTGATATTGAATGAGGTGAAACGGGTTCGTCCAGATTTACTAGTTGTTGGAAGCAGAGGTCTTGGACCTTTCCAAAAGGTTTTTGTTGGCACGGTTAGTGAATTTTGTTGGAAGCATGCTGAATGCCCTGTCATGACTATCAAACGCAATGCAGATGAAACTCCAAGGGACCCTGTTGATGACTAG

Protein sequence

>Msa0971020

MGEESTRVMIGVNESSLKGYPHPSISSKGAFDWTVSKIIRNNVSAFHLLFLHVQVPDEDGYDDVDSIYASGEDFKNMKQQEKARGTHLLEYFGDPKEVILNEVKRVRPDLLVVGSRGLGPFQKVFVGTVSEFCWKHAECPVMTIKRNADETPRDPVDD*