AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1440000


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1440000 MtrunA17_Chr4g0067371 74.586 181 6 2 1 141 384 564 3.79e-85 259
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1440000 AT4G15820.1 42.446 139 70 3 7 136 321 458 2.69e-27 105

Find 48 sgRNAs with CRISPR-Local

Find 265 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGAAGTTCTAGGGATTATT+TGG 0.119169 tig0028916:-41701 Msa1440000:three_prime_UTR
CTTTGTGCACTGTAAAATTT+TGG 0.151302 tig0028916:-41650 Msa1440000:three_prime_UTR
CATCGTCATGTCACCAATTA+TGG 0.260048 tig0028916:+41986 None:intergenic
GTCACCCAAATCTTCAAAAT+AGG 0.266261 tig0028916:+42382 None:intergenic
AGATCAAAATGTGCCATAAT+TGG 0.271589 tig0028916:-41999 Msa1440000:exon
CATGATCTTATAGAAGTTCT+AGG 0.286352 tig0028916:-41711 Msa1440000:three_prime_UTR
GTCCTCAATTCTCTTACTTC+AGG 0.297519 tig0028916:+44996 None:intergenic
ACCGCCATTCCAACCAAAAT+TGG 0.306725 tig0028916:-41957 Msa1440000:three_prime_UTR
AGAAGTTCTAGGGATTATTT+GGG 0.307284 tig0028916:-41700 Msa1440000:three_prime_UTR
TAGTTTAAACTTCACCTCTA+AGG 0.365761 tig0028916:-42486 Msa1440000:CDS
AAACTTCACCTCTAAGGAAC+AGG 0.407016 tig0028916:-42480 Msa1440000:CDS
TAGTAGAAAACAAAAGTTGT+TGG 0.462900 tig0028916:+42409 None:intergenic
AGTTGCAACATCTCCTATCA+AGG 0.464582 tig0028916:-41762 Msa1440000:three_prime_UTR
AGACAGCTTCAACTTTATGC+TGG 0.464632 tig0028916:-42070 Msa1440000:CDS
ATCCTCAAAAGCAACGGTAT+AGG 0.470890 tig0028916:+42442 None:intergenic
ATTTGGGGTAGGTAATATGT+AGG 0.474482 tig0028916:-41684 Msa1440000:three_prime_UTR
GCGTGGACATGTCCCTTGAT+AGG 0.476564 tig0028916:+41749 None:intergenic
TACTACTACTGACTGAACTT+TGG 0.485866 tig0028916:-41839 Msa1440000:three_prime_UTR
ACCTTTGTGACCTTCCTCGT+TGG 0.491487 tig0028916:+42514 None:intergenic
ACTGACTGAACTTTGGTGGC+AGG 0.492662 tig0028916:-41832 Msa1440000:three_prime_UTR
AAGCAGTCTTCACCTCTGTT+CGG 0.507774 tig0028916:+41867 None:intergenic
ATGTCCACGCTGGTGTCATT+AGG 0.507907 tig0028916:-41736 Msa1440000:three_prime_UTR
TTTGGGGTAGGTAATATGTA+GGG 0.513875 tig0028916:-41683 Msa1440000:three_prime_UTR
TATTCTTACTTGTATTGACA+TGG 0.522256 tig0028916:+42337 None:intergenic
GACAGCTTCAACTTTATGCT+GGG 0.524397 tig0028916:-42069 Msa1440000:CDS
TACTACTGACTGAACTTTGG+TGG 0.529646 tig0028916:-41836 Msa1440000:three_prime_UTR
TATTGACATGGGAACTGCAT+TGG 0.531084 tig0028916:+42349 None:intergenic
ATGATCTTATAGAAGTTCTA+GGG 0.536604 tig0028916:-41710 Msa1440000:three_prime_UTR
AATGAAGAAATAATATCTCA+TGG 0.563546 tig0028916:-42118 Msa1440000:CDS
ATTCTTACTTGTATTGACAT+GGG 0.568941 tig0028916:+42338 None:intergenic
AAAACAAAAGTTGTTGGCAT+CGG 0.581793 tig0028916:+42415 None:intergenic
TTCTAGGGATTATTTGGGGT+AGG 0.586381 tig0028916:-41695 Msa1440000:three_prime_UTR
CAAAGAGGCTCCAACGAGGA+AGG 0.587696 tig0028916:-42524 Msa1440000:CDS
ATTGAGGACACAAAACTCCC+AGG 0.597674 tig0028916:-44982 Msa1440000:CDS
GCTACTAACTGATGTTGAGA+TGG 0.601272 tig0028916:-42044 Msa1440000:CDS
TTGAGGACACAAAACTCCCA+GGG 0.605879 tig0028916:-44981 Msa1440000:CDS
CACCTGAAGTAAGAGAATTG+AGG 0.625819 tig0028916:-44998 Msa1440000:CDS
TTGGGGTAGGTAATATGTAG+GGG 0.632584 tig0028916:-41682 Msa1440000:three_prime_UTR
ATCAAGGGACATGTCCACGC+TGG 0.636595 tig0028916:-41746 Msa1440000:three_prime_UTR
GGCCTGATCCTCAAAAGCAA+CGG 0.638889 tig0028916:+42436 None:intergenic
GTTGCAACATCTCCTATCAA+GGG 0.638907 tig0028916:-41761 Msa1440000:three_prime_UTR
ACATATAAACTTTCAGAACA+AGG 0.639006 tig0028916:+41792 None:intergenic
AAGGTTATTCTCATGCAAAG+AGG 0.664120 tig0028916:-42539 Msa1440000:CDS
TCCAACGAGGAAGGTCACAA+AGG 0.682997 tig0028916:-42515 Msa1440000:CDS
GACGCTGAACTTCCGAACAG+AGG 0.689376 tig0028916:-41879 Msa1440000:three_prime_UTR
GAAGTTCTAGGGATTATTTG+GGG 0.724593 tig0028916:-41699 Msa1440000:three_prime_UTR
TGTGCCTAATGACACCAGCG+TGG 0.731174 tig0028916:+41732 None:intergenic
CATGCAAAGAGGCTCCAACG+AGG 0.752490 tig0028916:-42528 Msa1440000:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATTTATATTGAATTTC+GGG - tig0028916:42104-42123 Msa1440000:CDS 10.0%
!! AATTTCTTTATATTGAATTT+CGG - tig0028916:43693-43712 Msa1440000:intron 10.0%
!! AAATATATATTGAATGTAAG+TGG + tig0028916:42092-42111 None:intergenic 15.0%
!! ATTATATTATTGAATGTAAG+TGG + tig0028916:43676-43695 None:intergenic 15.0%
!! ATTTCTTTATATTGAATTTC+GGG - tig0028916:43694-43713 Msa1440000:intron 15.0%
!! CTAATATCAAAATCAAAAAT+TGG - tig0028916:44658-44677 Msa1440000:intron 15.0%
!! CACTTTATTAATTATCTGAA+TGG + tig0028916:41907-41926 None:intergenic 20.0%
!! TGTGTAAGAAATTTAAAGAT+CGG - tig0028916:42653-42672 Msa1440000:intron 20.0%
!!! ATTATTGTTAAGAGTTTGTT+AGG - tig0028916:43550-43569 Msa1440000:intron 20.0%
!! TTTCTTTATATTGAATTTCG+GGG - tig0028916:43695-43714 Msa1440000:intron 20.0%
!!! TGTGTAATTTTATTTGGTAT+AGG - tig0028916:44385-44404 Msa1440000:intron 20.0%
!! AATGAAGAAATAATATCTCA+TGG - tig0028916:44449-44468 Msa1440000:intron 20.0%
!!! AGATTTTGCTTGTTTAACTT+TGG + tig0028916:41691-41710 None:intergenic 25.0%
! AAGTTAAACAAGCAAAATCT+AGG - tig0028916:41691-41710 Msa1440000:three_prime_UTR 25.0%
! AGAGTAAAAGTTAGTTAATG+TGG - tig0028916:41833-41852 Msa1440000:three_prime_UTR 25.0%
!! GAAATATTGAAGAGTTTGTT+AGG - tig0028916:41983-42002 Msa1440000:three_prime_UTR 25.0%
! ATATATTGAATGTAAGTGGA+TGG + tig0028916:42088-42107 None:intergenic 25.0%
! AAAACAGTTCAGTTGTATTT+GGG - tig0028916:42476-42495 Msa1440000:CDS 25.0%
!!! TGGAAGATAATTTTAGAACA+TGG - tig0028916:42763-42782 Msa1440000:intron 25.0%
! AATTCTTCATCATCAAGAAT+TGG + tig0028916:42932-42951 None:intergenic 25.0%
!!! ATTCTTGATGATGAAGAATT+TGG - tig0028916:42932-42951 Msa1440000:intron 25.0%
!! TGGAAAATTGATAACATGAT+TGG - tig0028916:43072-43091 Msa1440000:intron 25.0%
! TATATGAAGACATGTAATCA+GGG - tig0028916:43115-43134 Msa1440000:intron 25.0%
! TTGACATATCAAAATCATTC+AGG - tig0028916:43199-43218 Msa1440000:intron 25.0%
! AAAATCATTCAGGAAAGATT+TGG - tig0028916:43209-43228 Msa1440000:intron 25.0%
! AAATCATTCAGGAAAGATTT+GGG - tig0028916:43210-43229 Msa1440000:intron 25.0%
! GTCACTTATTAATTATCGAA+TGG + tig0028916:43474-43493 None:intergenic 25.0%
!! AAACAACGAAGTAGTATTTT+CGG + tig0028916:43763-43782 None:intergenic 25.0%
!! TTGACTTTGTTGAAGTTTTA+AGG + tig0028916:43849-43868 None:intergenic 25.0%
!!! AGATTTCTTTTGTTTGCATT+GGG - tig0028916:43908-43927 Msa1440000:intron 25.0%
! TAGTAGAAAACAAAAGTTGT+TGG + tig0028916:44161-44180 None:intergenic 25.0%
!!! AGAATCCTATTTTGAAGATT+TGG - tig0028916:44180-44199 Msa1440000:intron 25.0%
!!! GAATCCTATTTTGAAGATTT+GGG - tig0028916:44181-44200 Msa1440000:intron 25.0%
!! ATTCTTACTTGTATTGACAT+GGG + tig0028916:44232-44251 None:intergenic 25.0%
!! TATTCTTACTTGTATTGACA+TGG + tig0028916:44233-44252 None:intergenic 25.0%
! AATTTCAATTAACAAGTGCA+TGG + tig0028916:44328-44347 None:intergenic 25.0%
! AAATAAAATTACACACACAC+TGG + tig0028916:44380-44399 None:intergenic 25.0%
!! AGTGTGTGTGTAATTTTATT+TGG - tig0028916:44379-44398 Msa1440000:intron 25.0%
!! AAATATACTCCTTTTAGACA+TGG + tig0028916:44411-44430 None:intergenic 25.0%
! GAGTATATTTATTGCTTTGT+AGG - tig0028916:44421-44440 Msa1440000:intron 25.0%
! ACATATAAACTTTCAGAACA+AGG + tig0028916:44778-44797 None:intergenic 25.0%
! ATGATCTTATAGAAGTTCTA+GGG - tig0028916:44857-44876 Msa1440000:intron 25.0%
! ATTATCCTTTTCAAAACCCT+GGG + tig0028916:41605-41624 None:intergenic 30.0%
! AATTATCCTTTTCAAAACCC+TGG + tig0028916:41606-41625 None:intergenic 30.0%
!!! AGGGTTTTGAAAAGGATAAT+TGG - tig0028916:41605-41624 Msa1440000:three_prime_UTR 30.0%
GGATAATTGGACAGTATAAA+TGG - tig0028916:41618-41637 Msa1440000:three_prime_UTR 30.0%
! AAATCTAGGACTGATATTTG+TGG - tig0028916:41705-41724 Msa1440000:three_prime_UTR 30.0%
TCGATATGCTACTGAAAAAT+AGG + tig0028916:41778-41797 None:intergenic 30.0%
!! TTTTTCAGTAGCATATCGAT+AGG - tig0028916:41779-41798 Msa1440000:three_prime_UTR 30.0%
GTAAAAGTTAGTTAATGTGG+TGG - tig0028916:41836-41855 Msa1440000:three_prime_UTR 30.0%
GCACTAATTGTTATGTGAAT+GGG - tig0028916:41858-41877 Msa1440000:three_prime_UTR 30.0%
CACTAATTGTTATGTGAATG+GGG - tig0028916:41859-41878 Msa1440000:three_prime_UTR 30.0%
! CACTCTTTTCATTGAAGATT+CGG - tig0028916:42284-42303 Msa1440000:intron 30.0%
!! TTTTCATTGAAGATTCGGTT+TGG - tig0028916:42289-42308 Msa1440000:intron 30.0%
! TTCATGACTTTTATCTTCTC+TGG + tig0028916:42418-42437 None:intergenic 30.0%
ATTCTCGTTAATACTTCTGA+TGG + tig0028916:42451-42470 None:intergenic 30.0%
CAAAACAGTTCAGTTGTATT+TGG - tig0028916:42475-42494 Msa1440000:CDS 30.0%
AAACAGTTCAGTTGTATTTG+GGG - tig0028916:42477-42496 Msa1440000:CDS 30.0%
GTGTGATGAAAGAAATCAAA+GGG - tig0028916:42675-42694 Msa1440000:intron 30.0%
TGTGATGAAAGAAATCAAAG+GGG - tig0028916:42676-42695 Msa1440000:intron 30.0%
AAAGAAATCAAAGGGGTAAA+AGG - tig0028916:42683-42702 Msa1440000:intron 30.0%
AAGAAATCAAAGGGGTAAAA+GGG - tig0028916:42684-42703 Msa1440000:intron 30.0%
!! GTCAGGCAATATTAATTTGT+TGG - tig0028916:42743-42762 Msa1440000:intron 30.0%
GAAGAATTTGGTATAAAAGC+TGG - tig0028916:42944-42963 Msa1440000:intron 30.0%
CATATACACTAGAAGTAATG+TGG + tig0028916:43101-43120 None:intergenic 30.0%
GTATATGAAGACATGTAATC+AGG - tig0028916:43114-43133 Msa1440000:intron 30.0%
ATATGAAGACATGTAATCAG+GGG - tig0028916:43116-43135 Msa1440000:intron 30.0%
AGCTCTTGATGTTCATAATA+TGG - tig0028916:43159-43178 Msa1440000:intron 30.0%
TCTTTATCACTGAGACAAAT+AGG + tig0028916:43274-43293 None:intergenic 30.0%
AGAGAGTAAAGTTAGTAATG+TGG - tig0028916:43404-43423 Msa1440000:intron 30.0%
!! TGGCACTATTGTTATTTGAT+GGG - tig0028916:43427-43446 Msa1440000:intron 30.0%
! ACATTGATTGTCATGTGAAT+GGG - tig0028916:43492-43511 Msa1440000:intron 30.0%
ACAATGGTGATAAAACAGAA+AGG + tig0028916:43637-43656 None:intergenic 30.0%
GTTCTATCAATATCCATACA+GGG - tig0028916:43717-43736 Msa1440000:intron 30.0%
! AACAACGAAGTAGTATTTTC+GGG + tig0028916:43762-43781 None:intergenic 30.0%
! TTCACAAGGTTCTTTAAGAA+AGG + tig0028916:43788-43807 None:intergenic 30.0%
TACAGCTAGAAAATTTCACA+AGG + tig0028916:43802-43821 None:intergenic 30.0%
TCAACAAAGTCAAATATCCT+AGG - tig0028916:43856-43875 Msa1440000:intron 30.0%
!! GAGATTTCTTTTGTTTGCAT+TGG - tig0028916:43907-43926 Msa1440000:intron 30.0%
!! TTTTGTTTGCATTGGGTTTA+TGG - tig0028916:43915-43934 Msa1440000:intron 30.0%
TTTGTTTGCATTGGGTTTAT+GGG - tig0028916:43916-43935 Msa1440000:intron 30.0%
ATGGGAAATAGACATATGTT+TGG - tig0028916:43934-43953 Msa1440000:intron 30.0%
CACAAAGAGATATGATTTCA+TGG + tig0028916:44008-44027 None:intergenic 30.0%
GAAATCATATCTCTTTGTGA+AGG - tig0028916:44009-44028 Msa1440000:intron 30.0%
TAGTTTAAACTTCACCTCTA+AGG - tig0028916:44081-44100 Msa1440000:intron 30.0%
AAAACAAAAGTTGTTGGCAT+CGG + tig0028916:44155-44174 None:intergenic 30.0%
AGATCAAAATGTGCCATAAT+TGG - tig0028916:44568-44587 Msa1440000:intron 30.0%
! TTTTCACTGTCTACCAATTT+TGG + tig0028916:44626-44645 None:intergenic 30.0%
CATGATCTTATAGAAGTTCT+AGG - tig0028916:44856-44875 Msa1440000:intron 30.0%
!! TAGAAGTTCTAGGGATTATT+TGG - tig0028916:44866-44885 Msa1440000:intron 30.0%
!! AGAAGTTCTAGGGATTATTT+GGG - tig0028916:44867-44886 Msa1440000:intron 30.0%
! CTTTGTGCACTGTAAAATTT+TGG - tig0028916:44917-44936 Msa1440000:intron 30.0%
TGCACATACTAGAAATAACG+TGG + tig0028916:41736-41755 None:intergenic 35.0%
GGCACTAATTGTTATGTGAA+TGG - tig0028916:41857-41876 Msa1440000:three_prime_UTR 35.0%
TTATGTGAATGGGGAATGAA+AGG - tig0028916:41868-41887 Msa1440000:three_prime_UTR 35.0%
TATGTGAATGGGGAATGAAA+GGG - tig0028916:41869-41888 Msa1440000:three_prime_UTR 35.0%
! TTGTTAGGAGATTTTCTCTC+TGG - tig0028916:41998-42017 Msa1440000:exon 35.0%
!! TGAATTTCGGGTTCTATCAA+TGG - tig0028916:42116-42135 Msa1440000:CDS 35.0%
! TTACACAAAGAGAGCTTTGA+CGG + tig0028916:42640-42659 None:intergenic 35.0%
GGTGTGATGAAAGAAATCAA+AGG - tig0028916:42674-42693 Msa1440000:intron 35.0%
GAGTATCTTCTTAACCTAGT+GGG - tig0028916:42721-42740 Msa1440000:intron 35.0%
ACATGGCTGAAATAGAGATA+AGG - tig0028916:42780-42799 Msa1440000:intron 35.0%
CATGGCTGAAATAGAGATAA+GGG - tig0028916:42781-42800 Msa1440000:intron 35.0%
!!! CTCAGAAGAGGTTTTGAATT+GGG - tig0028916:42877-42896 Msa1440000:intron 35.0%
!!! TCAGAAGAGGTTTTGAATTG+GGG - tig0028916:42878-42897 Msa1440000:intron 35.0%
TTCATCATCAAGAATTGGAG+TGG + tig0028916:42927-42946 None:intergenic 35.0%
TTGGTATAAAAGCTGGATCA+TGG - tig0028916:42951-42970 Msa1440000:intron 35.0%
TATCACTGAGACAAATAGGA+CGG + tig0028916:43270-43289 None:intergenic 35.0%
TTACTCTTCTTAATACGAGG+AGG + tig0028916:43297-43316 None:intergenic 35.0%
CCATTACTCTTCTTAATACG+AGG + tig0028916:43300-43319 None:intergenic 35.0%
CCTCGTATTAAGAAGAGTAA+TGG - tig0028916:43297-43316 Msa1440000:intron 35.0%
TTATAACAACCTTGTCCTCA+AGG + tig0028916:43336-43355 None:intergenic 35.0%
AGGACAAGGTTGTTATAAGA+AGG - tig0028916:43338-43357 Msa1440000:intron 35.0%
ACAAGGTTGTTATAAGAAGG+TGG - tig0028916:43341-43360 Msa1440000:intron 35.0%
!! TATAAGAAGGTGGCATTGAT+AGG - tig0028916:43351-43370 Msa1440000:intron 35.0%
GAGTAAAGTTAGTAATGTGG+TGG - tig0028916:43407-43426 Msa1440000:intron 35.0%
!! GTGGCACTATTGTTATTTGA+TGG - tig0028916:43426-43445 Msa1440000:intron 35.0%
!! GGCACTATTGTTATTTGATG+GGG - tig0028916:43428-43447 Msa1440000:intron 35.0%
TTATTTGATGGGGAGATGAA+AGG - tig0028916:43438-43457 Msa1440000:intron 35.0%
TATTTGATGGGGAGATGAAA+GGG - tig0028916:43439-43458 Msa1440000:intron 35.0%
! GACATTGATTGTCATGTGAA+TGG - tig0028916:43491-43510 Msa1440000:intron 35.0%
! CATTGATTGTCATGTGAATG+GGG - tig0028916:43493-43512 Msa1440000:intron 35.0%
AATGTAAGTGGATGAGCTTA+AGG + tig0028916:43664-43683 None:intergenic 35.0%
GGTTCTATCAATATCCATAC+AGG - tig0028916:43716-43735 Msa1440000:intron 35.0%
GGAAATAGACATATGTTTGG+CGG - tig0028916:43937-43956 Msa1440000:intron 35.0%
AGAGATATGATTTCATGGTC+AGG + tig0028916:44003-44022 None:intergenic 35.0%
AAGGTTATTCTCATGCAAAG+AGG - tig0028916:44028-44047 Msa1440000:intron 35.0%
! ATTTTGTTCCTGTTCCTTAG+AGG + tig0028916:44098-44117 None:intergenic 35.0%
GTCACCCAAATCTTCAAAAT+AGG + tig0028916:44188-44207 None:intergenic 35.0%
!!! TCTACCAATTTTGGTTGGAA+TGG + tig0028916:44617-44636 None:intergenic 35.0%
! TACTACTACTGACTGAACTT+TGG - tig0028916:44728-44747 Msa1440000:intron 35.0%
!! GAAGTTCTAGGGATTATTTG+GGG - tig0028916:44868-44887 Msa1440000:intron 35.0%
! ATTTGGGGTAGGTAATATGT+AGG - tig0028916:44883-44902 Msa1440000:intron 35.0%
! TTTGGGGTAGGTAATATGTA+GGG - tig0028916:44884-44903 Msa1440000:intron 35.0%
CACCTGAAGTAAGAGAATTG+AGG - tig0028916:41569-41588 Msa1440000:three_prime_UTR 40.0%
GTCCTCAATTCTCTTACTTC+AGG + tig0028916:41574-41593 None:intergenic 40.0%
!!! AAACTCCCAGGGTTTTGAAA+AGG - tig0028916:41597-41616 Msa1440000:three_prime_UTR 40.0%
GACAGTATAAATGGCAGTTC+AGG - tig0028916:41627-41646 Msa1440000:three_prime_UTR 40.0%
ATAAATGGCAGTTCAGGACA+AGG - tig0028916:41633-41652 Msa1440000:three_prime_UTR 40.0%
ATAGGACCTGAAAGTTCAAG+TGG - tig0028916:41797-41816 Msa1440000:three_prime_UTR 40.0%
TAGGACCTGAAAGTTCAAGT+GGG - tig0028916:41798-41817 Msa1440000:three_prime_UTR 40.0%
TATTCCCCACTTGAACTTTC+AGG + tig0028916:41806-41825 None:intergenic 40.0%
GAAAGTTCAAGTGGGGAATA+TGG - tig0028916:41806-41825 Msa1440000:three_prime_UTR 40.0%
ATGTGAATGGGGAATGAAAG+GGG - tig0028916:41870-41889 Msa1440000:three_prime_UTR 40.0%
AGTGCTTGATTGTCATGTGA+AGG - tig0028916:41923-41942 Msa1440000:three_prime_UTR 40.0%
GTGCTTGATTGTCATGTGAA+GGG - tig0028916:41924-41943 Msa1440000:three_prime_UTR 40.0%
TGCTTGATTGTCATGTGAAG+GGG - tig0028916:41925-41944 Msa1440000:three_prime_UTR 40.0%
TGTGAAGGGGTTAAAAAGAG+AGG - tig0028916:41938-41957 Msa1440000:three_prime_UTR 40.0%
AGGGGTTAAAAAGAGAGGAA+AGG - tig0028916:41943-41962 Msa1440000:three_prime_UTR 40.0%
GGGGTTAAAAAGAGAGGAAA+GGG - tig0028916:41944-41963 Msa1440000:three_prime_UTR 40.0%
ATCGTCACTATCTCGAAATC+CGG + tig0028916:42151-42170 None:intergenic 40.0%
AATTCAAACGTCTCGATCTG+TGG - tig0028916:42176-42195 Msa1440000:intron 40.0%
ATTCAAACGTCTCGATCTGT+GGG - tig0028916:42177-42196 Msa1440000:intron 40.0%
GTGGGAATCTGGAAAATGTT+TGG - tig0028916:42195-42214 Msa1440000:intron 40.0%
!! GAGTTTGCTAAATTGCGAGA+AGG - tig0028916:42253-42272 Msa1440000:intron 40.0%
!! TTGAAGATTCGGTTTGGAGA+TGG - tig0028916:42295-42314 Msa1440000:intron 40.0%
TTGACAACTCTCTGTACTGT+TGG - tig0028916:42350-42369 Msa1440000:CDS 40.0%
TGACAACTCTCTGTACTGTT+GGG - tig0028916:42351-42370 Msa1440000:CDS 40.0%
ATACTTCTGATGGCTAAACG+TGG + tig0028916:42441-42460 None:intergenic 40.0%
!!! TCAACATTGGTGGTTTTGGT+TGG + tig0028916:42587-42606 None:intergenic 40.0%
TTTGACGGCAATCACTATGA+CGG + tig0028916:42625-42644 None:intergenic 40.0%
CGAGTATCTTCTTAACCTAG+TGG - tig0028916:42720-42739 Msa1440000:intron 40.0%
TTAATATTGCCTGACCCACT+AGG + tig0028916:42738-42757 None:intergenic 40.0%
ACATTCAAAGTCCTCAGAAG+AGG - tig0028916:42865-42884 Msa1440000:intron 40.0%
CCAATTCAAAACCTCTTCTG+AGG + tig0028916:42879-42898 None:intergenic 40.0%
!!! CCTCAGAAGAGGTTTTGAAT+TGG - tig0028916:42876-42895 Msa1440000:intron 40.0%
GATCATGGAAACCCTGTTAT+GGG - tig0028916:42966-42985 Msa1440000:intron 40.0%
AAGGATTTCAAAACCACCAC+TGG + tig0028916:43019-43038 None:intergenic 40.0%
!!! AGTGGTGGTTTTGAAATCCT+TGG - tig0028916:43018-43037 Msa1440000:intron 40.0%
! TGGTGATGTTGGCAATGAAA+TGG - tig0028916:43052-43071 Msa1440000:intron 40.0%
GTTGTTCTGCACACTAAAGT+TGG + tig0028916:43248-43267 None:intergenic 40.0%
TAGGAACCTGAAAGTTCAAG+TGG - tig0028916:43370-43389 Msa1440000:intron 40.0%
AGGAACCTGAAAGTTCAAGT+GGG - tig0028916:43371-43390 Msa1440000:intron 40.0%
TATTCCCCACTTGAACTTTC+AGG + tig0028916:41806-41825 None:intergenic 40.0%
GAAAGTTCAAGTGGGGAATA+TGG - tig0028916:41806-41825 Msa1440000:three_prime_UTR 40.0%
GTGAATGGGGTTATAAAGAG+AGG - tig0028916:43506-43525 Msa1440000:intron 40.0%
TTTGTTAGGAGAGTTCTCTC+TGG - tig0028916:43564-43583 Msa1440000:intron 40.0%
ATGAGCTTAAGGCTCTACAA+TGG + tig0028916:43653-43672 None:intergenic 40.0%
TATCCATACAGGGACTTCTT+AGG - tig0028916:43727-43746 Msa1440000:intron 40.0%
ATACCTAAGAAGTCCCTGTA+TGG + tig0028916:43733-43752 None:intergenic 40.0%
AGTCAAATATCCTAGGTCGT+AGG - tig0028916:43863-43882 Msa1440000:intron 40.0%
AAGAAAAGATCCTACGACCT+AGG + tig0028916:43876-43895 None:intergenic 40.0%
GGAGCAAATGGATACATGTA+GGG + tig0028916:43982-44001 None:intergenic 40.0%
AGGAGCAAATGGATACATGT+AGG + tig0028916:43983-44002 None:intergenic 40.0%
ATTTCATGGTCAGGAGCAAA+TGG + tig0028916:43994-44013 None:intergenic 40.0%
! AAACTTCACCTCTAAGGAAC+AGG - tig0028916:44087-44106 Msa1440000:intron 40.0%
!!! TTCCTATACCGTTGCTTTTG+AGG - tig0028916:44123-44142 Msa1440000:intron 40.0%
ATCCTCAAAAGCAACGGTAT+AGG + tig0028916:44128-44147 None:intergenic 40.0%
TATTGACATGGGAACTGCAT+TGG + tig0028916:44221-44240 None:intergenic 40.0%
TGGTATAGGCCATGTCTAAA+AGG - tig0028916:44399-44418 Msa1440000:intron 40.0%
AGACAGCTTCAACTTTATGC+TGG - tig0028916:44497-44516 Msa1440000:intron 40.0%
GACAGCTTCAACTTTATGCT+GGG - tig0028916:44498-44517 Msa1440000:intron 40.0%
GCTACTAACTGATGTTGAGA+TGG - tig0028916:44523-44542 Msa1440000:intron 40.0%
CATCGTCATGTCACCAATTA+TGG + tig0028916:44584-44603 None:intergenic 40.0%
!!! ACCAATTTTGGTTGGAATGG+CGG + tig0028916:44614-44633 None:intergenic 40.0%
!! CACTGTCTACCAATTTTGGT+TGG + tig0028916:44622-44641 None:intergenic 40.0%
! TACTACTGACTGAACTTTGG+TGG - tig0028916:44731-44750 Msa1440000:intron 40.0%
AGTTGCAACATCTCCTATCA+AGG - tig0028916:44805-44824 Msa1440000:intron 40.0%
GTTGCAACATCTCCTATCAA+GGG - tig0028916:44806-44825 Msa1440000:intron 40.0%
! TTCTAGGGATTATTTGGGGT+AGG - tig0028916:44872-44891 Msa1440000:intron 40.0%
TTGGGGTAGGTAATATGTAG+GGG - tig0028916:44885-44904 Msa1440000:intron 40.0%
ATTGAGGACACAAAACTCCC+AGG - tig0028916:41585-41604 Msa1440000:three_prime_UTR 45.0%
TTGAGGACACAAAACTCCCA+GGG - tig0028916:41586-41605 Msa1440000:three_prime_UTR 45.0%
AGGACCTGAAAGTTCAAGTG+GGG - tig0028916:41799-41818 Msa1440000:three_prime_UTR 45.0%
TTTCTCTCTGGTCTAAGCTC+TGG - tig0028916:42010-42029 Msa1440000:CDS 45.0%
TATCTCGAAATCCGGTAGGT+CGG + tig0028916:42143-42162 None:intergenic 45.0%
TCACTATCTCGAAATCCGGT+AGG + tig0028916:42147-42166 None:intergenic 45.0%
ACGAAATCCGACTCTGTTGA+AGG - tig0028916:42512-42531 Msa1440000:CDS 45.0%
AAATCCGACTCTGTTGAAGG+AGG - tig0028916:42515-42534 Msa1440000:CDS 45.0%
!! CGGTTCAACATTGGTGGTTT+TGG + tig0028916:42591-42610 None:intergenic 45.0%
AATCACTATGACGGCATCTG+TGG + tig0028916:42616-42635 None:intergenic 45.0%
! TCTTCTTAACCTAGTGGGTC+AGG - tig0028916:42726-42745 Msa1440000:intron 45.0%
AGATAAGGGAGCTAGTCCAA+TGG - tig0028916:42795-42814 Msa1440000:intron 45.0%
GATAAGGGAGCTAGTCCAAT+GGG - tig0028916:42796-42815 Msa1440000:intron 45.0%
ACTTCTTCCATGTCTCCCAT+TGG + tig0028916:42814-42833 None:intergenic 45.0%
GGATCATGGAAACCCTGTTA+TGG - tig0028916:42965-42984 Msa1440000:intron 45.0%
TCATTGCCAACATCACCACT+AGG + tig0028916:43050-43069 None:intergenic 45.0%
GAAGACATGTAATCAGGGGT+TGG - tig0028916:43120-43139 Msa1440000:intron 45.0%
GGAAATCACTTCCAACCTTG+AGG - tig0028916:43318-43337 Msa1440000:intron 45.0%
AACAACCTTGTCCTCAAGGT+TGG + tig0028916:43332-43351 None:intergenic 45.0%
GGAACCTGAAAGTTCAAGTG+GGG - tig0028916:43372-43391 Msa1440000:intron 45.0%
!!! TACCGTTGCTTTTGAGGATC+AGG - tig0028916:44129-44148 Msa1440000:intron 45.0%
ACCGCCATTCCAACCAAAAT+TGG - tig0028916:44610-44629 Msa1440000:intron 45.0%
AAGCAGTCTTCACCTCTGTT+CGG + tig0028916:44703-44722 None:intergenic 45.0%
!! TATATATTTATATTGAATTT+CGG - tig0028916:42103-42122 Msa1440000:CDS 5.0%
! TCTCTGGTCTAAGCTCTGGT+AGG - tig0028916:42014-42033 Msa1440000:CDS 50.0%
CTGGTAGGTTCTCTGAACTC+TGG - tig0028916:42029-42048 Msa1440000:CDS 50.0%
CTATCAATGGTCCGACCTAC+CGG - tig0028916:42129-42148 Msa1440000:intron 50.0%
TGTACTGTTGGGCAAGAACG+AGG - tig0028916:42362-42381 Msa1440000:CDS 50.0%
TGTTGGGCAAGAACGAGGAA+TGG - tig0028916:42367-42386 Msa1440000:CDS 50.0%
TCGATGCGAGTAACCAGACA+CGG + tig0028916:42393-42412 None:intergenic 50.0%
TCCTCCTCCTTCAACAGAGT+CGG + tig0028916:42522-42541 None:intergenic 50.0%
AAGGAGGAGGAATTGCGAAG+AGG - tig0028916:42531-42550 Msa1440000:CDS 50.0%
TCTGTGGTGCGGTTCAACAT+TGG + tig0028916:42600-42619 None:intergenic 50.0%
AGCTAGTCCAATGGGAGACA+TGG - tig0028916:42804-42823 Msa1440000:intron 50.0%
ACCCTGTTATGGGAAGTCTC+TGG - tig0028916:42976-42995 Msa1440000:intron 50.0%
GCCAGAGACTTCCCATAACA+GGG + tig0028916:42980-42999 None:intergenic 50.0%
AATCCTTGGCGTGTACCTAG+TGG - tig0028916:43032-43051 Msa1440000:intron 50.0%
! CGTGTACCTAGTGGTGATGT+TGG - tig0028916:43041-43060 Msa1440000:intron 50.0%
CACTTCCAACCTTGAGGACA+AGG - tig0028916:43324-43343 Msa1440000:intron 50.0%
TAGGAGAGTTCTCTCTGGTC+TGG - tig0028916:43569-43588 Msa1440000:intron 50.0%
CTGTAGGAGTTCTCTGACTC+TGG - tig0028916:43601-43620 Msa1440000:intron 50.0%
TCCAACGAGGAAGGTCACAA+AGG - tig0028916:44052-44071 Msa1440000:intron 50.0%
ACCTTTGTGACCTTCCTCGT+TGG + tig0028916:44056-44075 None:intergenic 50.0%
GGCCTGATCCTCAAAAGCAA+CGG + tig0028916:44134-44153 None:intergenic 50.0%
! ACTGACTGAACTTTGGTGGC+AGG - tig0028916:44735-44754 Msa1440000:intron 50.0%
!! ATGTCCACGCTGGTGTCATT+AGG - tig0028916:44831-44850 Msa1440000:intron 50.0%
CGTCTCGATCTGTGGGAATC+TGG - tig0028916:42184-42203 Msa1440000:intron 55.0%
TCCGACTCTGTTGAAGGAGG+AGG - tig0028916:42518-42537 Msa1440000:CDS 55.0%
GTGGTGCGGTTCAACATTGG+TGG + tig0028916:42597-42616 None:intergenic 55.0%
CTATGACGGCATCTGTGGTG+CGG + tig0028916:42611-42630 None:intergenic 55.0%
GGCCAGAGACTTCCCATAAC+AGG + tig0028916:42981-43000 None:intergenic 55.0%
CACTGGTCACTACGTGGTAC+TGG + tig0028916:43002-43021 None:intergenic 55.0%
CAGTACCACGTAGTGACCAG+TGG - tig0028916:43000-43019 Msa1440000:intron 55.0%
TACCACGTAGTGACCAGTGG+TGG - tig0028916:43003-43022 Msa1440000:intron 55.0%
AACCACCACTGGTCACTACG+TGG + tig0028916:43008-43027 None:intergenic 55.0%
TCACCACTAGGTACACGCCA+AGG + tig0028916:43038-43057 None:intergenic 55.0%
!! GGTCTGGAGCTTAGCTCTGT+AGG - tig0028916:43585-43604 Msa1440000:intron 55.0%
CATGCAAAGAGGCTCCAACG+AGG - tig0028916:44039-44058 Msa1440000:intron 55.0%
CAAAGAGGCTCCAACGAGGA+AGG - tig0028916:44043-44062 Msa1440000:intron 55.0%
GACGCTGAACTTCCGAACAG+AGG - tig0028916:44688-44707 Msa1440000:intron 55.0%
GCGTGGACATGTCCCTTGAT+AGG + tig0028916:44821-44840 None:intergenic 55.0%
ATCAAGGGACATGTCCACGC+TGG - tig0028916:44821-44840 Msa1440000:intron 55.0%
TGTGCCTAATGACACCAGCG+TGG + tig0028916:44838-44857 None:intergenic 55.0%
GAACGAGGAATGGCCGTGTC+TGG - tig0028916:42377-42396 Msa1440000:CDS 60.0%
Chromosome Type Strat End Strand Name
tig0028916 gene 41562 45027 41562 ID=Msa1440000;Name=Msa1440000
tig0028916 mRNA 41562 45027 41562 ID=Msa1440000-mRNA-1;Parent=Msa1440000;Name=Msa1440000-mRNA-1;_AED=0.33;_eAED=0.33;_QI=0|0.5|0.66|1|0.5|0.66|3|441|141
tig0028916 exon 41562 42146 41562 ID=Msa1440000-mRNA-1:exon:12054;Parent=Msa1440000-mRNA-1
tig0028916 exon 42346 42558 42346 ID=Msa1440000-mRNA-1:exon:12053;Parent=Msa1440000-mRNA-1
tig0028916 exon 44959 45027 44959 ID=Msa1440000-mRNA-1:exon:12052;Parent=Msa1440000-mRNA-1
tig0028916 CDS 44959 45027 44959 ID=Msa1440000-mRNA-1:cds;Parent=Msa1440000-mRNA-1
tig0028916 CDS 42346 42558 42346 ID=Msa1440000-mRNA-1:cds;Parent=Msa1440000-mRNA-1
tig0028916 CDS 42003 42146 42003 ID=Msa1440000-mRNA-1:cds;Parent=Msa1440000-mRNA-1
tig0028916 three_prime_UTR 41562 42002 41562 ID=Msa1440000-mRNA-1:three_prime_utr;Parent=Msa1440000-mRNA-1
Gene Sequence

>Msa1440000

ATGTCTTCACCTGAAGTAAGAGAATTGAGGACACAAAACTCCCAGGGTTTTGAAAAGGATAATTGGACAGTTATTCTCATGCAAAGAGGCTCCAACGAGGAAGGTCACAAAGGTCTCTATAGTTTAAACTTCACCTCTAAGGAACAGGAACAAAATGATGATTCCTATACCGTTGCTTTTGAGGATCAGGCCGATGCCAACAACTTTTGTTTTCTACTAGAATCCTATTTTGAAGATTTGGGTGACAATTTTAGTGCCAATGCAGTTCCCATGTCAATACAAGAATTGAATGAAGAAATAATATCTCATGGCGAGAAAGTAGTAGTTGTTAAAAAGAGACAGCTTCAACTTTATGCTGGGCAGCTACTAACTGATGTTGAGATGGCGTTGTGCTCTATAATAGAACAAGATCAAAATGTGCCATAA

Protein sequence

>Msa1440000

MSSPEVRELRTQNSQGFEKDNWTVILMQRGSNEEGHKGLYSLNFTSKEQEQNDDSYTVAFEDQADANNFCFLLESYFEDLGDNFSANAVPMSIQELNEEIISHGEKVVVVKKRQLQLYAGQLLTDVEMALCSIIEQDQNVP*