Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0006000 | XP_003588865.1 | 83.893 | 149 | 6 | 2 | 1 | 131 | 1 | 149 | 1.88e-75 | 233 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0006000 | G7I884 | 83.893 | 149 | 6 | 2 | 1 | 131 | 1 | 149 | 9.00e-76 | 233 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006000 | Msa0017510 | 0.832917 | 7.189532e-56 | -8.615850e-47 |
| Msa0006000 | Msa0028640 | 0.806906 | 6.553123e-50 | -8.615850e-47 |
| Msa0006000 | Msa0040690 | 0.806573 | 7.704408e-50 | -8.615850e-47 |
| Msa0006000 | Msa0046750 | 0.813482 | 2.503012e-51 | -8.615850e-47 |
| Msa0006000 | Msa0050390 | 0.808873 | 2.500335e-50 | -8.615850e-47 |
| Msa0006000 | Msa0089630 | 0.811415 | 7.083174e-51 | -8.615850e-47 |
| Msa0006000 | Msa0110970 | 0.803280 | 3.759393e-49 | -8.615850e-47 |
| Msa0006000 | Msa0135380 | 0.808459 | 3.065556e-50 | -8.615850e-47 |
| Msa0006000 | Msa0136070 | 0.806107 | 9.659511e-50 | -8.615850e-47 |
| Msa0006000 | Msa0157290 | 0.833183 | 6.173699e-56 | -8.615850e-47 |
| Msa0006000 | Msa0160550 | 0.809737 | 1.631882e-50 | -8.615850e-47 |
| Msa0006000 | Msa0164980 | 0.804359 | 2.243280e-49 | -8.615850e-47 |
| Msa0006000 | Msa0173990 | 0.816927 | 4.295348e-52 | -8.615850e-47 |
| Msa0006000 | Msa0178960 | 0.802561 | 5.292146e-49 | -8.615850e-47 |
| Msa0006000 | Msa0184960 | 0.804801 | 1.814303e-49 | -8.615850e-47 |
| Msa0006000 | Msa0189290 | 0.806763 | 7.025567e-50 | -8.615850e-47 |
| Msa0006000 | Msa0192510 | 0.800918 | 1.150042e-48 | -8.615850e-47 |
| Msa0006000 | Msa0193120 | 0.804238 | 2.377608e-49 | -8.615850e-47 |
| Msa0006000 | Msa0220740 | 0.803704 | 3.069710e-49 | -8.615850e-47 |
| Msa0006000 | Msa0225740 | 0.802475 | 5.512314e-49 | -8.615850e-47 |
| Msa0006000 | Msa0231650 | 0.807441 | 5.046468e-50 | -8.615850e-47 |
| Msa0006000 | Msa0241640 | 0.835789 | 1.367339e-56 | -8.615850e-47 |
| Msa0006000 | Msa0257460 | 0.800511 | 1.392512e-48 | -8.615850e-47 |
| Msa0006000 | Msa0272690 | 0.813526 | 2.447714e-51 | -8.615850e-47 |
| Msa0006000 | Msa0279790 | 0.849888 | 2.421019e-60 | -8.615850e-47 |
| Msa0006000 | Msa0287650 | 0.805625 | 1.219451e-49 | -8.615850e-47 |
| Msa0006000 | Msa0294560 | -0.800959 | 1.128333e-48 | -8.615850e-47 |
| Msa0006000 | Msa0298700 | 0.802162 | 6.394253e-49 | -8.615850e-47 |
| Msa0006000 | Msa0320100 | 0.805376 | 1.375367e-49 | -8.615850e-47 |
| Msa0006000 | Msa0336040 | -0.818497 | 1.900726e-52 | -8.615850e-47 |
| Msa0006000 | Msa0337620 | 0.806558 | 7.761510e-50 | -8.615850e-47 |
| Msa0006000 | Msa0346360 | 0.803014 | 4.266588e-49 | -8.615850e-47 |
| Msa0006000 | Msa0347360 | 0.801220 | 9.979360e-49 | -8.615850e-47 |
| Msa0006000 | Msa0350990 | 0.817658 | 2.942130e-52 | -8.615850e-47 |
| Msa0006000 | Msa0351030 | 0.816537 | 5.254206e-52 | -8.615850e-47 |
| Msa0006000 | Msa0351080 | 0.805211 | 1.489623e-49 | -8.615850e-47 |
| Msa0006000 | Msa0351100 | 0.816782 | 4.629547e-52 | -8.615850e-47 |
| Msa0006000 | Msa0385580 | 0.809766 | 1.608778e-50 | -8.615850e-47 |
| Msa0006000 | Msa0406880 | 0.811464 | 6.909479e-51 | -8.615850e-47 |
| Msa0006000 | Msa0416300 | 0.806033 | 1.000971e-49 | -8.615850e-47 |
| Msa0006000 | Msa0419820 | 0.815385 | 9.498515e-52 | -8.615850e-47 |
| Msa0006000 | Msa0424920 | 0.809548 | 1.792442e-50 | -8.615850e-47 |
| Msa0006000 | Msa0425010 | 0.818341 | 2.061637e-52 | -8.615850e-47 |
| Msa0006000 | Msa0425940 | 0.801786 | 7.639764e-49 | -8.615850e-47 |
| Msa0006000 | Msa0426160 | 0.801157 | 1.028137e-48 | -8.615850e-47 |
| Msa0006000 | Msa0436490 | -0.806472 | 8.093074e-50 | -8.615850e-47 |
| Msa0006000 | Msa0443500 | 0.801536 | 8.596315e-49 | -8.615850e-47 |
| Msa0006000 | Msa0459770 | -0.806840 | 6.765564e-50 | -8.615850e-47 |
| Msa0006000 | Msa0466390 | 0.811225 | 7.785480e-51 | -8.615850e-47 |
| Msa0006000 | Msa0516320 | 0.833006 | 6.833035e-56 | -8.615850e-47 |
| Msa0006000 | Msa0529680 | 0.811590 | 6.488860e-51 | -8.615850e-47 |
| Msa0006000 | Msa0535030 | 0.801099 | 1.056383e-48 | -8.615850e-47 |
| Msa0006000 | Msa0535060 | 0.802463 | 5.543354e-49 | -8.615850e-47 |
| Msa0006000 | Msa0547320 | 0.800765 | 1.235956e-48 | -8.615850e-47 |
| Msa0006000 | Msa0565960 | 0.811964 | 5.378978e-51 | -8.615850e-47 |
| Msa0006000 | Msa0569200 | 0.802922 | 4.456565e-49 | -8.615850e-47 |
| Msa0006000 | Msa0585000 | -0.806915 | 6.523907e-50 | -8.615850e-47 |
| Msa0006000 | Msa0591770 | 0.809981 | 1.446197e-50 | -8.615850e-47 |
| Msa0006000 | Msa0597330 | 0.825569 | 4.364833e-54 | -8.615850e-47 |
| Msa0006000 | Msa0607200 | 0.805677 | 1.189292e-49 | -8.615850e-47 |
| Msa0006000 | Msa0615590 | 0.802159 | 6.402749e-49 | -8.615850e-47 |
| Msa0006000 | Msa0621590 | 0.804895 | 1.734324e-49 | -8.615850e-47 |
| Msa0006000 | Msa0625070 | 0.800078 | 1.705980e-48 | -8.615850e-47 |
| Msa0006000 | Msa0638070 | 0.806039 | 9.983137e-50 | -8.615850e-47 |
| Msa0006000 | Msa0656530 | 0.801389 | 9.213807e-49 | -8.615850e-47 |
| Msa0006000 | Msa0661190 | -0.819639 | 1.044879e-52 | -8.615850e-47 |
| Msa0006000 | Msa0669320 | 0.811394 | 7.156783e-51 | -8.615850e-47 |
| Msa0006000 | Msa0669850 | 0.800432 | 1.445334e-48 | -8.615850e-47 |
| Msa0006000 | Msa0689010 | 0.810117 | 1.351611e-50 | -8.615850e-47 |
| Msa0006000 | Msa0696640 | 0.801971 | 7.000635e-49 | -8.615850e-47 |
| Msa0006000 | Msa0698920 | 0.805320 | 1.413341e-49 | -8.615850e-47 |
| Msa0006000 | Msa0743720 | 0.811631 | 6.357053e-51 | -8.615850e-47 |
| Msa0006000 | Msa0750880 | 0.801292 | 9.645478e-49 | -8.615850e-47 |
| Msa0006000 | Msa0787260 | 0.802912 | 4.479436e-49 | -8.615850e-47 |
| Msa0006000 | Msa0803890 | 0.807368 | 5.231175e-50 | -8.615850e-47 |
| Msa0006000 | Msa0808270 | 0.811383 | 7.194338e-51 | -8.615850e-47 |
| Msa0006000 | Msa0850960 | 0.826438 | 2.712962e-54 | -8.615850e-47 |
| Msa0006000 | Msa0871270 | 0.830133 | 3.487303e-55 | -8.615850e-47 |
| Msa0006000 | Msa0876200 | 0.826099 | 3.266028e-54 | -8.615850e-47 |
| Msa0006000 | Msa0880140 | 0.829169 | 5.982172e-55 | -8.615850e-47 |
| Msa0006000 | Msa0888530 | 0.802583 | 5.236201e-49 | -8.615850e-47 |
| Msa0006000 | Msa0910990 | 0.820792 | 5.687146e-53 | -8.615850e-47 |
| Msa0006000 | Msa0938220 | 0.820008 | 8.605712e-53 | -8.615850e-47 |
| Msa0006000 | Msa0944190 | 0.813632 | 2.320072e-51 | -8.615850e-47 |
| Msa0006000 | Msa0947660 | 0.803635 | 3.172487e-49 | -8.615850e-47 |
| Msa0006000 | Msa0970420 | 0.821300 | 4.343992e-53 | -8.615850e-47 |
| Msa0006000 | Msa0975340 | 0.800375 | 1.484767e-48 | -8.615850e-47 |
| Msa0006000 | Msa0992480 | 0.808270 | 3.362890e-50 | -8.615850e-47 |
| Msa0006000 | Msa0993290 | 0.814324 | 1.632526e-51 | -8.615850e-47 |
| Msa0006000 | Msa0993600 | 0.815882 | 7.361998e-52 | -8.615850e-47 |
| Msa0006000 | Msa0998690 | 0.806953 | 6.402478e-50 | -8.615850e-47 |
| Msa0006000 | Msa1014540 | 0.816465 | 5.452436e-52 | -8.615850e-47 |
| Msa0006000 | Msa1040400 | 0.801186 | 1.014145e-48 | -8.615850e-47 |
| Msa0006000 | Msa1040830 | 0.809407 | 1.921415e-50 | -8.615850e-47 |
| Msa0006000 | Msa1134110 | 0.803330 | 3.670923e-49 | -8.615850e-47 |
| Msa0006000 | Msa1139810 | 0.817151 | 3.827253e-52 | -8.615850e-47 |
| Msa0006000 | Msa1179460 | 0.816000 | 6.927087e-52 | -8.615850e-47 |
| Msa0006000 | Msa1181550 | 0.851148 | 1.071826e-60 | -8.615850e-47 |
| Msa0006000 | Msa1187840 | 0.800043 | 1.734387e-48 | -8.615850e-47 |
| Msa0006000 | Msa1233890 | 0.811647 | 6.304779e-51 | -8.615850e-47 |
| Msa0006000 | Msa1238930 | 0.825753 | 3.947597e-54 | -8.615850e-47 |
| Msa0006000 | Msa1244250 | 0.825345 | 4.929909e-54 | -8.615850e-47 |
| Msa0006000 | Msa1254610 | 0.803218 | 3.871664e-49 | -8.615850e-47 |
| Msa0006000 | Msa1275800 | 0.825585 | 4.326158e-54 | -8.615850e-47 |
| Msa0006000 | Msa1283840 | 0.802319 | 5.936284e-49 | -8.615850e-47 |
| Msa0006000 | Msa1284260 | 0.804061 | 2.588106e-49 | -8.615850e-47 |
| Msa0006000 | Msa1293280 | 0.808555 | 2.923531e-50 | -8.615850e-47 |
| Msa0006000 | Msa1312560 | 0.815977 | 7.009736e-52 | -8.615850e-47 |
| Msa0006000 | Msa1327680 | 0.800459 | 1.427406e-48 | -8.615850e-47 |
| Msa0006000 | Msa1336710 | 0.808078 | 3.696422e-50 | -8.615850e-47 |
| Msa0006000 | Msa1346370 | 0.828909 | 6.916684e-55 | -8.615850e-47 |
| Msa0006000 | Msa1359040 | 0.801433 | 9.023678e-49 | -8.615850e-47 |
| Msa0006000 | Msa1395230 | -0.806537 | 7.838297e-50 | -8.615850e-47 |
| Msa0006000 | Msa1424750 | 0.808227 | 3.434546e-50 | -8.615850e-47 |
| Msa0006000 | Msa1445610 | -0.800098 | 1.690251e-48 | -8.615850e-47 |
| Msa0006000 | Msa1457440 | 0.802227 | 6.201512e-49 | -8.615850e-47 |
| Msa0006000 | Msa1457910 | 0.811170 | 8.006136e-51 | -8.615850e-47 |
| Msa0006000 | Msa1460020 | 0.806180 | 9.321679e-50 | -8.615850e-47 |
| Msa0006000 | Msa1461300 | 0.822503 | 2.287229e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0006000 | MtrunA17_Chr1g0150121 | 83.893 | 149 | 6 | 2 | 1 | 131 | 1 | 149 | 1.73e-79 | 233 |
| Msa0006000 | MtrunA17_Chr3g0136861 | 34.118 | 170 | 60 | 4 | 1 | 119 | 1 | 169 | 4.79e-16 | 72.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 54 sgRNAs with CRISPR-Local
Find 298 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTCACCATTTGGGTTCTT+AGG | 0.209622 | 1_1:-8776074 | Msa0006000:three_prime_UTR |
| GAGCAAGGAATTCAGGTAAT+TGG | 0.221390 | 1_1:+8780327 | None:intergenic |
| GGAATTCAGGTAATTGGTTT+TGG | 0.249605 | 1_1:+8780333 | None:intergenic |
| CTTTCTCTCTTCACTGCAAT+TGG | 0.251347 | 1_1:+8780460 | None:intergenic |
| TTCAGCGTCCTTGTTGCTTT+GGG | 0.275461 | 1_1:-8776419 | Msa0006000:CDS |
| AGATGAATGCTTATTGCTTA+TGG | 0.285315 | 1_1:-8776278 | Msa0006000:three_prime_UTR |
| GTGATGCGTCAATAATTAAA+TGG | 0.297952 | 1_1:-8776378 | Msa0006000:exon |
| AATTTAATATTCTCACCATT+TGG | 0.301922 | 1_1:-8776083 | Msa0006000:three_prime_UTR |
| CTGTCCGCGTTTGAGTTTCA+TGG | 0.313096 | 1_1:-8776110 | Msa0006000:three_prime_UTR |
| TATTGCTTATGGCTTGCGAC+TGG | 0.317936 | 1_1:-8776267 | Msa0006000:three_prime_UTR |
| GGTTTGACTCAACACGGATT+TGG | 0.322061 | 1_1:+8780481 | None:intergenic |
| GAAGTCGTTCCAGTCTCTTT+TGG | 0.333344 | 1_1:+8779752 | None:intergenic |
| GTCAATAATTAAATGGCAAC+TGG | 0.334356 | 1_1:-8776371 | Msa0006000:three_prime_UTR |
| ATTTAATATTCTCACCATTT+GGG | 0.346095 | 1_1:-8776082 | Msa0006000:three_prime_UTR |
| TCTGATAGAGCAAGGAATTC+AGG | 0.352555 | 1_1:+8780320 | None:intergenic |
| CACCATTTGGGTTCTTAGGT+TGG | 0.364969 | 1_1:-8776070 | Msa0006000:three_prime_UTR |
| AATATACCTTCACTCAAATC+TGG | 0.367127 | 1_1:+8779730 | None:intergenic |
| GTCACGTTCTCTGTTTCATT+TGG | 0.368600 | 1_1:+8780419 | None:intergenic |
| AGAGAGAAAGAGAAAGAAAA+TGG | 0.371294 | 1_1:-8780447 | Msa0006000:exon |
| GGGAGTGTAGAGAGATGATC+AGG | 0.372048 | 1_1:+8780296 | None:intergenic |
| GTTCAGCGTCCTTGTTGCTT+TGG | 0.391508 | 1_1:-8776420 | Msa0006000:CDS |
| ATTGCTTATGGCTTGCGACT+GGG | 0.406029 | 1_1:-8776266 | Msa0006000:three_prime_UTR |
| CAAAAGTCATTATCTAACTT+TGG | 0.413615 | 1_1:+8776172 | None:intergenic |
| AGAGAGAATGAGCACGTTGA+AGG | 0.421510 | 1_1:+8780270 | None:intergenic |
| TCGAATTGTTCTTCGGAAGA+TGG | 0.432800 | 1_1:+8778469 | None:intergenic |
| TACAAACAGCAGCTCATAGC+TGG | 0.435981 | 1_1:+8776303 | None:intergenic |
| TCAACTACGTATATATTGTA+TGG | 0.445908 | 1_1:-8776197 | Msa0006000:three_prime_UTR |
| AGCAGAACAGTGGCAAGATA+TGG | 0.460848 | 1_1:-8778539 | Msa0006000:intron |
| AATTTGATCGAATTGTTCTT+CGG | 0.466862 | 1_1:+8778462 | None:intergenic |
| AAGTGTGTGCCAAAAGAGAC+TGG | 0.467228 | 1_1:-8779761 | Msa0006000:CDS |
| TACAATATATACGTAGTTGA+AGG | 0.499424 | 1_1:+8776200 | None:intergenic |
| ATTCGATCAAATTGATTCCA+AGG | 0.503194 | 1_1:-8778452 | Msa0006000:CDS |
| TCAGCGTCCTTGTTGCTTTG+GGG | 0.510939 | 1_1:-8776418 | Msa0006000:CDS |
| GAATGAGCACGTTGAAGGAG+TGG | 0.521754 | 1_1:+8780275 | None:intergenic |
| GGCCAACCTAAGAACCCAAA+TGG | 0.527569 | 1_1:+8776068 | None:intergenic |
| TGCAGTATATGTGAACTACA+TGG | 0.528259 | 1_1:-8776461 | Msa0006000:intron |
| CATGAAACTCAAACGCGGAC+AGG | 0.532022 | 1_1:+8776111 | None:intergenic |
| TGAAATACGAACATTCAAAG+AGG | 0.532834 | 1_1:+8780222 | None:intergenic |
| TTGCTTATGGCTTGCGACTG+GGG | 0.534371 | 1_1:-8776265 | Msa0006000:three_prime_UTR |
| AGGAGCAGACTGGTCAAAAG+AGG | 0.536792 | 1_1:-8778498 | Msa0006000:CDS |
| GGGTAGAAGTGAGTTTAGCG+AGG | 0.542381 | 1_1:+8780243 | None:intergenic |
| GGTAGAAGTGAGTTTAGCGA+GGG | 0.544132 | 1_1:+8780244 | None:intergenic |
| AATGAGCACGTTGAAGGAGT+GGG | 0.547922 | 1_1:+8780276 | None:intergenic |
| TGGGGCGACTCATCAAAGCT+TGG | 0.551107 | 1_1:-8776400 | Msa0006000:CDS |
| CGACTTCCAGATTTGAGTGA+AGG | 0.560270 | 1_1:-8779736 | Msa0006000:intron |
| GCAATTGGTTTGACTCAACA+CGG | 0.581499 | 1_1:+8780475 | None:intergenic |
| GAAATACGAACATTCAAAGA+GGG | 0.610103 | 1_1:+8780223 | None:intergenic |
| AGAACAGTGGCAAGATATGG+TGG | 0.633543 | 1_1:-8778536 | Msa0006000:CDS |
| GGTTATTTCAAGCAGAACAG+TGG | 0.634126 | 1_1:-8778549 | Msa0006000:intron |
| GATCAGGGTCTGATAGAGCA+AGG | 0.637548 | 1_1:+8780312 | None:intergenic |
| TCAATAATTAAATGGCAACT+GGG | 0.658227 | 1_1:-8776370 | Msa0006000:three_prime_UTR |
| TGAGTCGCCCCAAAGCAACA+AGG | 0.677678 | 1_1:+8776411 | None:intergenic |
| GGAGTGTAGAGAGATGATCA+GGG | 0.695485 | 1_1:+8780297 | None:intergenic |
| ACAACCATGAAACTCAAACG+CGG | 0.755773 | 1_1:+8776106 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATAAAGTTACAATTTTTGA+AGG | + | chr1_1:8776381-8776400 | None:intergenic | 15.0% |
| !!! | TTTTTAAAATTGAAAAACTG+AGG | + | chr1_1:8777598-8777617 | None:intergenic | 15.0% |
| !! | ATGTGTTTGAAAAAAAAAAA+TGG | - | chr1_1:8777987-8778006 | Msa0006000:intron | 15.0% |
| !! | TAATAAATATATCTCAAAGA+TGG | + | chr1_1:8778542-8778561 | None:intergenic | 15.0% |
| !!! | TTTTGAAGGAAAACATTAAT+GGG | + | chr1_1:8776367-8776386 | None:intergenic | 20.0% |
| !!! | TTTTTGAAGGAAAACATTAA+TGG | + | chr1_1:8776368-8776387 | None:intergenic | 20.0% |
| !!! | GTTGTTTTTTTTTCTTTTTC+TGG | - | chr1_1:8776447-8776466 | Msa0006000:CDS | 20.0% |
| !! | ATACTTAGAATGAAATATCA+CGG | + | chr1_1:8777176-8777195 | None:intergenic | 20.0% |
| !! | TGTTGCATACAAATAAAAAT+GGG | - | chr1_1:8777497-8777516 | Msa0006000:intron | 20.0% |
| !! | ATGTTAAGAATTTGATTGAA+TGG | - | chr1_1:8777892-8777911 | Msa0006000:intron | 20.0% |
| !! | TGTTAAGAATTTGATTGAAT+GGG | - | chr1_1:8777893-8777912 | Msa0006000:intron | 20.0% |
| !! | CTACCAAAATACATAAAATA+TGG | + | chr1_1:8778319-8778338 | None:intergenic | 20.0% |
| !! | TTATGATCTCTATCTAATTT+AGG | - | chr1_1:8778349-8778368 | Msa0006000:intron | 20.0% |
| !! | TATGATCTCTATCTAATTTA+GGG | - | chr1_1:8778350-8778369 | Msa0006000:intron | 20.0% |
| !! | ACATAATTAGTTAATTCGTT+TGG | - | chr1_1:8778851-8778870 | Msa0006000:intron | 20.0% |
| !!! | AAAGGTAAAATTTGAGTTAT+TGG | - | chr1_1:8779050-8779069 | Msa0006000:intron | 20.0% |
| !! | ATAAATTTCCATTGTAGTTA+TGG | - | chr1_1:8779131-8779150 | Msa0006000:intron | 20.0% |
| !!! | AAGTATAGTTATTTCAGTTA+TGG | - | chr1_1:8779484-8779503 | Msa0006000:intron | 20.0% |
| !! | GTAAACAAAGCAATTATATA+TGG | + | chr1_1:8780010-8780029 | None:intergenic | 20.0% |
| !!! | TATATAATTGCTTTGTTTAC+TGG | - | chr1_1:8780010-8780029 | Msa0006000:intron | 20.0% |
| !!! | CCTATAAATATTCTAGATTT+TGG | + | chr1_1:8780042-8780061 | None:intergenic | 20.0% |
| !!! | CCAAAATCTAGAATATTTAT+AGG | - | chr1_1:8780039-8780058 | Msa0006000:intron | 20.0% |
| !! | AATTTAATATTCTCACCATT+TGG | - | chr1_1:8780474-8780493 | Msa0006000:five_prime_UTR | 20.0% |
| !! | ATTTAATATTCTCACCATTT+GGG | - | chr1_1:8780475-8780494 | Msa0006000:five_prime_UTR | 20.0% |
| ! | ACAACAACAAAAACGAAAAT+GGG | + | chr1_1:8776429-8776448 | None:intergenic | 25.0% |
| ! | AACAACAACAAAAACGAAAA+TGG | + | chr1_1:8776430-8776449 | None:intergenic | 25.0% |
| !! | CTAAATGGTTCTTTTCTTTT+GGG | - | chr1_1:8776536-8776555 | Msa0006000:intron | 25.0% |
| ! | TGAATGTAATCATATGTGTA+CGG | + | chr1_1:8776637-8776656 | None:intergenic | 25.0% |
| !!! | TTGTTCAAGTTTTGACATTT+GGG | - | chr1_1:8776718-8776737 | Msa0006000:intron | 25.0% |
| !! | CAAACTATTTTCATATAAGC+TGG | - | chr1_1:8776923-8776942 | Msa0006000:intron | 25.0% |
| !! | TTATCATAAGTCCTTTTCAA+TGG | - | chr1_1:8777125-8777144 | Msa0006000:intron | 25.0% |
| ! | TGAAAATTCAACCATTGAAA+AGG | + | chr1_1:8777139-8777158 | None:intergenic | 25.0% |
| ! | GTGTTGCATACAAATAAAAA+TGG | - | chr1_1:8777496-8777515 | Msa0006000:intron | 25.0% |
| ! | CATACAAATAAAAATGGGAA+TGG | - | chr1_1:8777502-8777521 | Msa0006000:intron | 25.0% |
| ! | AGTAGCAGGAAAAAAAAAAT+CGG | + | chr1_1:8777677-8777696 | None:intergenic | 25.0% |
| ! | AATTTGATCGAATTGTTCTT+CGG | + | chr1_1:8778098-8778117 | None:intergenic | 25.0% |
| ! | AATAACAGAAAACAGAGTTT+GGG | + | chr1_1:8778265-8778284 | None:intergenic | 25.0% |
| ! | CCAAAATACATAAAATATGG+AGG | + | chr1_1:8778316-8778335 | None:intergenic | 25.0% |
| !! | CCTCCATATTTTATGTATTT+TGG | - | chr1_1:8778313-8778332 | Msa0006000:intron | 25.0% |
| !!! | ATTGAGTTTTAGCAAAAGTT+CGG | - | chr1_1:8778572-8778591 | Msa0006000:intron | 25.0% |
| ! | TAATGAGAAAATGAAAGCTA+AGG | + | chr1_1:8778910-8778929 | None:intergenic | 25.0% |
| !!! | TTTTGTTTAAAGCAGTTTAG+TGG | + | chr1_1:8778942-8778961 | None:intergenic | 25.0% |
| !! | ATTGTTGGTTGAATTATTCA+AGG | - | chr1_1:8779025-8779044 | Msa0006000:intron | 25.0% |
| !! | TTGTTGGTTGAATTATTCAA+GGG | - | chr1_1:8779026-8779045 | Msa0006000:intron | 25.0% |
| ! | AAATGTAATGATAAAGCTTG+TGG | - | chr1_1:8779319-8779338 | Msa0006000:intron | 25.0% |
| ! | AATGTAATGATAAAGCTTGT+GGG | - | chr1_1:8779320-8779339 | Msa0006000:intron | 25.0% |
| ! | CTACTCATTATTAATTGAGT+TGG | + | chr1_1:8779412-8779431 | None:intergenic | 25.0% |
| ! | CAACTCAATTAATAATGAGT+AGG | - | chr1_1:8779410-8779429 | Msa0006000:intron | 25.0% |
| !! | ATAGTTATTTCAGTTATGGA+CGG | - | chr1_1:8779488-8779507 | Msa0006000:intron | 25.0% |
| ! | TCAATAATTAAATGGCAACT+GGG | - | chr1_1:8780187-8780206 | Msa0006000:intron | 25.0% |
| ! | TACAATATATACGTAGTTGA+AGG | + | chr1_1:8780360-8780379 | None:intergenic | 25.0% |
| ! | TCAACTACGTATATATTGTA+TGG | - | chr1_1:8780360-8780379 | Msa0006000:CDS | 25.0% |
| ! | CAAAAGTCATTATCTAACTT+TGG | + | chr1_1:8780388-8780407 | None:intergenic | 25.0% |
| AGAGAGAAAGAGAAAGAAAA+TGG | - | chr1_1:8776110-8776129 | Msa0006000:three_prime_UTR | 30.0% | |
| GAAATACGAACATTCAAAGA+GGG | + | chr1_1:8776337-8776356 | None:intergenic | 30.0% | |
| TGAAATACGAACATTCAAAG+AGG | + | chr1_1:8776338-8776357 | None:intergenic | 30.0% | |
| ! | ATTTAAAGGCATGGTCATTT+GGG | + | chr1_1:8776503-8776522 | None:intergenic | 30.0% |
| ! | GCTAAATGGTTCTTTTCTTT+TGG | - | chr1_1:8776535-8776554 | Msa0006000:intron | 30.0% |
| !! | GTTGTTCAAGTTTTGACATT+TGG | - | chr1_1:8776717-8776736 | Msa0006000:intron | 30.0% |
| !! | TGTTCAAGTTTTGACATTTG+GGG | - | chr1_1:8776719-8776738 | Msa0006000:intron | 30.0% |
| AATATACCTTCACTCAAATC+TGG | + | chr1_1:8776830-8776849 | None:intergenic | 30.0% | |
| GTTACTTATCCAAACAAACA+GGG | + | chr1_1:8776875-8776894 | None:intergenic | 30.0% | |
| AGTTACTTATCCAAACAAAC+AGG | + | chr1_1:8776876-8776895 | None:intergenic | 30.0% | |
| AATAAGCGGAAAACAAGTTA+TGG | - | chr1_1:8776985-8777004 | Msa0006000:intron | 30.0% | |
| AAAAGGACTTATGATAAGCA+TGG | + | chr1_1:8777122-8777141 | None:intergenic | 30.0% | |
| GTTATCTCTAATGTCTAAGA+CGG | - | chr1_1:8777251-8777270 | Msa0006000:intron | 30.0% | |
| ATAATATCAGTAGTAAGCTG+TGG | - | chr1_1:8777364-8777383 | Msa0006000:intron | 30.0% | |
| ACAAATAAAAATGGGAATGG+AGG | - | chr1_1:8777505-8777524 | Msa0006000:intron | 30.0% | |
| GTAGCAGGAAAAAAAAAATC+GGG | + | chr1_1:8777676-8777695 | None:intergenic | 30.0% | |
| !!! | CTAGTTTTTTTTTAGGGCAA+TGG | + | chr1_1:8777738-8777757 | None:intergenic | 30.0% |
| CATTGCCCTAAAAAAAAACT+AGG | - | chr1_1:8777736-8777755 | Msa0006000:intron | 30.0% | |
| !!! | GCTGTCCTAGTTTTTTTTTA+GGG | + | chr1_1:8777744-8777763 | None:intergenic | 30.0% |
| AAGAATTTGATTGAATGGGT+TGG | - | chr1_1:8777897-8777916 | Msa0006000:intron | 30.0% | |
| !! | CTTTTTGTTTAACACTCTGT+TGG | - | chr1_1:8777931-8777950 | Msa0006000:intron | 30.0% |
| TCAAAATGAAAGACACGTAT+GGG | + | chr1_1:8777962-8777981 | None:intergenic | 30.0% | |
| TTCAAAATGAAAGACACGTA+TGG | + | chr1_1:8777963-8777982 | None:intergenic | 30.0% | |
| ! | ATTCGATCAAATTGATTCCA+AGG | - | chr1_1:8778105-8778124 | Msa0006000:intron | 30.0% |
| AAACAGAGTTTGGGTAATAA+GGG | + | chr1_1:8778256-8778275 | None:intergenic | 30.0% | |
| AAAACAGAGTTTGGGTAATA+AGG | + | chr1_1:8778257-8778276 | None:intergenic | 30.0% | |
| CAATAACAGAAAACAGAGTT+TGG | + | chr1_1:8778266-8778285 | None:intergenic | 30.0% | |
| GCAACGAAGTTAAAAATCAT+AGG | - | chr1_1:8778479-8778498 | Msa0006000:CDS | 30.0% | |
| GGTTATATGAGATTTGAATG+TGG | - | chr1_1:8778500-8778519 | Msa0006000:CDS | 30.0% | |
| TATATGAGATTTGAATGTGG+AGG | - | chr1_1:8778503-8778522 | Msa0006000:CDS | 30.0% | |
| TAATACGATTATACGACTGA+AGG | - | chr1_1:8778652-8778671 | Msa0006000:intron | 30.0% | |
| AATACGATTATACGACTGAA+GGG | - | chr1_1:8778653-8778672 | Msa0006000:intron | 30.0% | |
| !! | TAGCGAGTTTTGATGTTTAT+CGG | - | chr1_1:8778718-8778737 | Msa0006000:intron | 30.0% |
| TTCATTTAGCAAGTGATCTT+AGG | - | chr1_1:8778884-8778903 | Msa0006000:intron | 30.0% | |
| GTTGAATTATTCAAGGGAAA+AGG | - | chr1_1:8779032-8779051 | Msa0006000:intron | 30.0% | |
| TACTAGTTAGATTTCCTGAA+TGG | - | chr1_1:8779078-8779097 | Msa0006000:intron | 30.0% | |
| TCAAGATCCTTACACTAATA+AGG | + | chr1_1:8779112-8779131 | None:intergenic | 30.0% | |
| GTGTATAAGTAGAACAAAAG+AGG | - | chr1_1:8779218-8779237 | Msa0006000:intron | 30.0% | |
| ! | AACAAAAGAGGCATGAAATA+AGG | - | chr1_1:8779230-8779249 | Msa0006000:intron | 30.0% |
| GTGTTTGATTATTTGATGAG+TGG | - | chr1_1:8779283-8779302 | Msa0006000:intron | 30.0% | |
| ATTATTTGATGAGTGGTTCT+GGG | - | chr1_1:8779290-8779309 | Msa0006000:intron | 30.0% | |
| ! | TGAACTCTTAATTTAGCCTT+TGG | - | chr1_1:8779439-8779458 | Msa0006000:intron | 30.0% |
| ! | AATTTAGCCTTTGGTTATAG+AGG | - | chr1_1:8779448-8779467 | Msa0006000:intron | 30.0% |
| AATTGATCCTCTATAACCAA+AGG | + | chr1_1:8779458-8779477 | None:intergenic | 30.0% | |
| AATCTAGAAGACAAAGGATA+TGG | - | chr1_1:8779795-8779814 | Msa0006000:intron | 30.0% | |
| ATCTTTAGATCTAAACCTGA+AGG | - | chr1_1:8779818-8779837 | Msa0006000:intron | 30.0% | |
| !!! | CTTTTAAAACAAAAGCCTTC+AGG | + | chr1_1:8779836-8779855 | None:intergenic | 30.0% |
| !!! | GCTTTTGTTTTAAAAGCCAA+AGG | - | chr1_1:8779840-8779859 | Msa0006000:intron | 30.0% |
| TTAGCCTGAAAATCATACTT+GGG | - | chr1_1:8779926-8779945 | Msa0006000:intron | 30.0% | |
| GTGATGCGTCAATAATTAAA+TGG | - | chr1_1:8780179-8780198 | Msa0006000:intron | 30.0% | |
| GTCAATAATTAAATGGCAAC+TGG | - | chr1_1:8780186-8780205 | Msa0006000:intron | 30.0% | |
| AGATGAATGCTTATTGCTTA+TGG | - | chr1_1:8780279-8780298 | Msa0006000:CDS | 30.0% | |
| !! | GGTTAACTATGCTTTTTAAC+TGG | - | chr1_1:8780313-8780332 | Msa0006000:CDS | 30.0% |
| !! | GGAATTCAGGTAATTGGTTT+TGG | + | chr1_1:8776227-8776246 | None:intergenic | 35.0% |
| ! | GATTTAAAGGCATGGTCATT+TGG | + | chr1_1:8776504-8776523 | None:intergenic | 35.0% |
| GCTTACAAGCTCAGATTTAA+AGG | + | chr1_1:8776517-8776536 | None:intergenic | 35.0% | |
| ATCTGAGCTTGTAAGCTAAA+TGG | - | chr1_1:8776521-8776540 | Msa0006000:intron | 35.0% | |
| ! | GATTTTGTGTTCGACAGAAT+AGG | - | chr1_1:8776771-8776790 | Msa0006000:intron | 35.0% |
| TTTCTTAGACCCTGTTTGTT+TGG | - | chr1_1:8776863-8776882 | Msa0006000:intron | 35.0% | |
| TTAACTAGTGACATAAGCAC+TGG | + | chr1_1:8777054-8777073 | None:intergenic | 35.0% | |
| ! | AAGAACACGGGTCTATTTTA+TGG | + | chr1_1:8777093-8777112 | None:intergenic | 35.0% |
| !!! | TTTTAGAGTCCTACAGATGT+AGG | + | chr1_1:8777290-8777309 | None:intergenic | 35.0% |
| CACACAAGAAAGACAAAACT+TGG | + | chr1_1:8777313-8777332 | None:intergenic | 35.0% | |
| CTATCTGCTATTACACATAG+CGG | + | chr1_1:8777412-8777431 | None:intergenic | 35.0% | |
| AAATAGAGGAAAGCCACATA+GGG | - | chr1_1:8777442-8777461 | Msa0006000:intron | 35.0% | |
| AAAAATGGTACACATAGTGC+AGG | - | chr1_1:8777624-8777643 | Msa0006000:intron | 35.0% | |
| !!! | GTTTTTTTTTAGGGCAATGG+CGG | + | chr1_1:8777735-8777754 | None:intergenic | 35.0% |
| !!! | CGCTGTCCTAGTTTTTTTTT+AGG | + | chr1_1:8777745-8777764 | None:intergenic | 35.0% |
| !! | AGATTTTGGGGGAAAAAACT+GGG | + | chr1_1:8777782-8777801 | None:intergenic | 35.0% |
| ! | TATAGCATAGCAGATTTTGG+GGG | + | chr1_1:8777793-8777812 | None:intergenic | 35.0% |
| ! | GTATAGCATAGCAGATTTTG+GGG | + | chr1_1:8777794-8777813 | None:intergenic | 35.0% |
| ! | GGTATAGCATAGCAGATTTT+GGG | + | chr1_1:8777795-8777814 | None:intergenic | 35.0% |
| CAAATAACAGTGTGCTATAG+CGG | + | chr1_1:8777816-8777835 | None:intergenic | 35.0% | |
| ! | CACACTGTTATTTGACAACA+CGG | - | chr1_1:8777822-8777841 | Msa0006000:intron | 35.0% |
| ! | ACACTGTTATTTGACAACAC+GGG | - | chr1_1:8777823-8777842 | Msa0006000:intron | 35.0% |
| CAAAATGAAAGACACGTATG+GGG | + | chr1_1:8777961-8777980 | None:intergenic | 35.0% | |
| TTTATTCTCACAAAACCCTC+AGG | + | chr1_1:8778435-8778454 | None:intergenic | 35.0% | |
| !! | AGTTTTAGCAAAAGTTCGGA+AGG | - | chr1_1:8778576-8778595 | Msa0006000:intron | 35.0% |
| !! | TTCGGAAGGTATTTACCATA+GGG | - | chr1_1:8778590-8778609 | Msa0006000:intron | 35.0% |
| !! | AGCGAGTTTTGATGTTTATC+GGG | - | chr1_1:8778719-8778738 | Msa0006000:intron | 35.0% |
| ATCAACAGTACACTAACAGA+AGG | + | chr1_1:8778773-8778792 | None:intergenic | 35.0% | |
| AGGTTCACCTTATTAGTGTA+AGG | - | chr1_1:8779102-8779121 | Msa0006000:intron | 35.0% | |
| TGTGCATTCCATAACTACAA+TGG | + | chr1_1:8779142-8779161 | None:intergenic | 35.0% | |
| AATGCACACCTAATGTCTAT+GGG | - | chr1_1:8779154-8779173 | Msa0006000:intron | 35.0% | |
| GATTATTTGATGAGTGGTTC+TGG | - | chr1_1:8779289-8779308 | Msa0006000:intron | 35.0% | |
| AATGTAACGATTGCCATTAC+GGG | + | chr1_1:8779597-8779616 | None:intergenic | 35.0% | |
| GAATGTAACGATTGCCATTA+CGG | + | chr1_1:8779598-8779617 | None:intergenic | 35.0% | |
| GGCAATCGTTACATTCTTAA+CGG | - | chr1_1:8779602-8779621 | Msa0006000:intron | 35.0% | |
| ! | GAACCATTAGGTCATCTTTT+GGG | + | chr1_1:8779753-8779772 | None:intergenic | 35.0% |
| ! | AGAACCATTAGGTCATCTTT+TGG | + | chr1_1:8779754-8779773 | None:intergenic | 35.0% |
| !! | CAAGTATGATTTTCAGGCTA+AGG | + | chr1_1:8779927-8779946 | None:intergenic | 35.0% |
| CTTAGCCTGAAAATCATACT+TGG | - | chr1_1:8779925-8779944 | Msa0006000:intron | 35.0% | |
| TAGCCTGAAAATCATACTTG+GGG | - | chr1_1:8779927-8779946 | Msa0006000:intron | 35.0% | |
| TGCAGTATATGTGAACTACA+TGG | - | chr1_1:8780096-8780115 | Msa0006000:intron | 35.0% | |
| !! | GCAATTGGTTTGACTCAACA+CGG | + | chr1_1:8776085-8776104 | None:intergenic | 40.0% |
| CTTTCTCTCTTCACTGCAAT+TGG | + | chr1_1:8776100-8776119 | None:intergenic | 40.0% | |
| GTCACGTTCTCTGTTTCATT+TGG | + | chr1_1:8776141-8776160 | None:intergenic | 40.0% | |
| GAGCAAGGAATTCAGGTAAT+TGG | + | chr1_1:8776233-8776252 | None:intergenic | 40.0% | |
| TCTGATAGAGCAAGGAATTC+AGG | + | chr1_1:8776240-8776259 | None:intergenic | 40.0% | |
| ATAGTGAAGTTGAAGTGCAG+AGG | - | chr1_1:8776471-8776490 | Msa0006000:intron | 40.0% | |
| TAGTGAAGTTGAAGTGCAGA+GGG | - | chr1_1:8776472-8776491 | Msa0006000:intron | 40.0% | |
| CAAGCTCAGATTTAAAGGCA+TGG | + | chr1_1:8776512-8776531 | None:intergenic | 40.0% | |
| GTCTGATCGAATGACATGTT+CGG | - | chr1_1:8776591-8776610 | Msa0006000:intron | 40.0% | |
| AGATGTTCTCAAAGCTATCC+TGG | - | chr1_1:8776947-8776966 | Msa0006000:intron | 40.0% | |
| GCAGAGCTTATGGAAATAAG+CGG | - | chr1_1:8776971-8776990 | Msa0006000:intron | 40.0% | |
| ! | CACGGGTCTATTTTATGGAT+TGG | + | chr1_1:8777088-8777107 | None:intergenic | 40.0% |
| ACATTCCTCATCTTTACTGC+TGG | - | chr1_1:8777214-8777233 | Msa0006000:intron | 40.0% | |
| CAAAACCAGCAGTAAAGATG+AGG | + | chr1_1:8777222-8777241 | None:intergenic | 40.0% | |
| AGTCCTACAGATGTAGGATA+AGG | + | chr1_1:8777284-8777303 | None:intergenic | 40.0% | |
| CAGTAGTAAGCTGTGGTAAA+TGG | - | chr1_1:8777371-8777390 | Msa0006000:intron | 40.0% | |
| TAGTAAGCTGTGGTAAATGG+TGG | - | chr1_1:8777374-8777393 | Msa0006000:intron | 40.0% | |
| ATAGCATTGCCTGCAAATAG+AGG | - | chr1_1:8777428-8777447 | Msa0006000:intron | 40.0% | |
| CAAATAGAGGAAAGCCACAT+AGG | - | chr1_1:8777441-8777460 | Msa0006000:intron | 40.0% | |
| AATAGAGGAAAGCCACATAG+GGG | - | chr1_1:8777443-8777462 | Msa0006000:intron | 40.0% | |
| !! | GTTTCTGGTAGCAGATATAG+TGG | + | chr1_1:8777701-8777720 | None:intergenic | 40.0% |
| CTATATCTGCTACCAGAAAC+TGG | - | chr1_1:8777701-8777720 | Msa0006000:intron | 40.0% | |
| !! | CAGATTTTGGGGGAAAAAAC+TGG | + | chr1_1:8777783-8777802 | None:intergenic | 40.0% |
| ! | CGGTATAGCATAGCAGATTT+TGG | + | chr1_1:8777796-8777815 | None:intergenic | 40.0% |
| GGTTTCAGTTTATATTGCCG+AGG | - | chr1_1:8777844-8777863 | Msa0006000:intron | 40.0% | |
| ! | GGTTATTTCAAGCAGAACAG+TGG | - | chr1_1:8778008-8778027 | Msa0006000:intron | 40.0% |
| !! | GGTGGAGCAAAAGTTTTATG+AGG | - | chr1_1:8778039-8778058 | Msa0006000:intron | 40.0% |
| !! | AAGTTTTATGAGGAGCAGAC+TGG | - | chr1_1:8778049-8778068 | Msa0006000:intron | 40.0% |
| TCGAATTGTTCTTCGGAAGA+TGG | + | chr1_1:8778091-8778110 | None:intergenic | 40.0% | |
| ! | AATTGATTCCAAGGAGTACG+TGG | - | chr1_1:8778114-8778133 | Msa0006000:intron | 40.0% |
| ! | TAGTAGTGGAAGCAGTATCA+AGG | - | chr1_1:8778171-8778190 | Msa0006000:intron | 40.0% |
| ! | TGATGACGATGATGATGATG+AGG | - | chr1_1:8778222-8778241 | Msa0006000:intron | 40.0% |
| !! | GTTCGGAAGGTATTTACCAT+AGG | - | chr1_1:8778589-8778608 | Msa0006000:intron | 40.0% |
| GACTCTTCACATATAACGCA+AGG | + | chr1_1:8778688-8778707 | None:intergenic | 40.0% | |
| CAAAACTCGCTAAAAGAGTG+AGG | + | chr1_1:8778710-8778729 | None:intergenic | 40.0% | |
| CAGTACACTAACAGAAGGTA+GGG | + | chr1_1:8778768-8778787 | None:intergenic | 40.0% | |
| ACAGTACACTAACAGAAGGT+AGG | + | chr1_1:8778769-8778788 | None:intergenic | 40.0% | |
| ! | GTTGATTGTACTGATGAGTG+CGG | - | chr1_1:8778787-8778806 | Msa0006000:intron | 40.0% |
| CCAACAATCATGAAAGAGAC+TGG | + | chr1_1:8779013-8779032 | None:intergenic | 40.0% | |
| CCAGTCTCTTTCATGATTGT+TGG | - | chr1_1:8779010-8779029 | Msa0006000:intron | 40.0% | |
| AGTTAGATTTCCTGAATGGC+AGG | - | chr1_1:8779082-8779101 | Msa0006000:intron | 40.0% | |
| GAATGCACACCTAATGTCTA+TGG | - | chr1_1:8779153-8779172 | Msa0006000:intron | 40.0% | |
| GGCCTTAAGCTTGAATAACT+GGG | - | chr1_1:8779175-8779194 | Msa0006000:intron | 40.0% | |
| CACCCAGTTATTCAAGCTTA+AGG | + | chr1_1:8779180-8779199 | None:intergenic | 40.0% | |
| AGGCATGAAATAAGGCAACA+AGG | - | chr1_1:8779238-8779257 | Msa0006000:intron | 40.0% | |
| AAATAAGGCAACAAGGTCAC+TGG | - | chr1_1:8779245-8779264 | Msa0006000:intron | 40.0% | |
| GCTCATTAGTACAGTGATGA+TGG | + | chr1_1:8779371-8779390 | None:intergenic | 40.0% | |
| ATGTAACGATTGCCATTACG+GGG | + | chr1_1:8779596-8779615 | None:intergenic | 40.0% | |
| GTTACATTCTTAACGGCCTT+GGG | - | chr1_1:8779609-8779628 | Msa0006000:intron | 40.0% | |
| !! | ATGTGGAATAGAGGTGTTAG+GGG | + | chr1_1:8779648-8779667 | None:intergenic | 40.0% |
| !! | CATGTGGAATAGAGGTGTTA+GGG | + | chr1_1:8779649-8779668 | None:intergenic | 40.0% |
| TCTATTCCACATGCTCTGTA+CGG | - | chr1_1:8779656-8779675 | Msa0006000:intron | 40.0% | |
| TGTAGATCGTGAAAATGACG+TGG | - | chr1_1:8779680-8779699 | Msa0006000:intron | 40.0% | |
| GCTGGTTAATCATGAGATGA+AGG | - | chr1_1:8779715-8779734 | Msa0006000:intron | 40.0% | |
| GATCCCAAAAGATGACCTAA+TGG | - | chr1_1:8779747-8779766 | Msa0006000:CDS | 40.0% | |
| TTCTGCAATGCAGAACCATT+AGG | + | chr1_1:8779765-8779784 | None:intergenic | 40.0% | |
| GTTCTGCATTGCAGAAAGAA+GGG | - | chr1_1:8779769-8779788 | Msa0006000:intron | 40.0% | |
| TTCTGCATTGCAGAAAGAAG+GGG | - | chr1_1:8779770-8779789 | Msa0006000:intron | 40.0% | |
| GGGGAAAATCTAGAAGACAA+AGG | - | chr1_1:8779789-8779808 | Msa0006000:intron | 40.0% | |
| CAGGATAGAGATATAATCCC+AGG | + | chr1_1:8779953-8779972 | None:intergenic | 40.0% | |
| CTGGGATTATATCTCTATCC+TGG | - | chr1_1:8779951-8779970 | Msa0006000:intron | 40.0% | |
| ACAACCATGAAACTCAAACG+CGG | + | chr1_1:8780454-8780473 | None:intergenic | 40.0% | |
| ! | TTCTCACCATTTGGGTTCTT+AGG | - | chr1_1:8780483-8780502 | Msa0006000:five_prime_UTR | 40.0% |
| GGTTTGACTCAACACGGATT+TGG | + | chr1_1:8776079-8776098 | None:intergenic | 45.0% | |
| GGAGTGTAGAGAGATGATCA+GGG | + | chr1_1:8776263-8776282 | None:intergenic | 45.0% | |
| AATGAGCACGTTGAAGGAGT+GGG | + | chr1_1:8776284-8776303 | None:intergenic | 45.0% | |
| AGAGAGAATGAGCACGTTGA+AGG | + | chr1_1:8776290-8776309 | None:intergenic | 45.0% | |
| GGTAGAAGTGAGTTTAGCGA+GGG | + | chr1_1:8776316-8776335 | None:intergenic | 45.0% | |
| TGTCATTCGATCAGACGTGT+CGG | + | chr1_1:8776587-8776606 | None:intergenic | 45.0% | |
| ! | TTGTGTTGACGTGTCAGTGT+CGG | - | chr1_1:8776669-8776688 | Msa0006000:intron | 45.0% |
| AAGTGTGTGCCAAAAGAGAC+TGG | - | chr1_1:8776796-8776815 | Msa0006000:intron | 45.0% | |
| ! | GAAGTCGTTCCAGTCTCTTT+TGG | + | chr1_1:8776808-8776827 | None:intergenic | 45.0% |
| CGACTTCCAGATTTGAGTGA+AGG | - | chr1_1:8776821-8776840 | Msa0006000:intron | 45.0% | |
| ATTTCCATAAGCTCTGCACC+AGG | + | chr1_1:8776968-8776987 | None:intergenic | 45.0% | |
| AGCATGGTCGAGAAAGAACA+CGG | + | chr1_1:8777106-8777125 | None:intergenic | 45.0% | |
| ! | CAGCCTTATCCTACATCTGT+AGG | - | chr1_1:8777278-8777297 | Msa0006000:intron | 45.0% |
| TGTGGCTTTCCTCTATTTGC+AGG | + | chr1_1:8777440-8777459 | None:intergenic | 45.0% | |
| GCTACCAGAAACTGGAATAG+CGG | - | chr1_1:8777709-8777728 | Msa0006000:intron | 45.0% | |
| CAAAACGAAGACAACAGCCT+CGG | + | chr1_1:8777864-8777883 | None:intergenic | 45.0% | |
| AGCAGAACAGTGGCAAGATA+TGG | - | chr1_1:8778018-8778037 | Msa0006000:intron | 45.0% | |
| AGAACAGTGGCAAGATATGG+TGG | - | chr1_1:8778021-8778040 | Msa0006000:intron | 45.0% | |
| CAATTTCTCCACGTACTCCT+TGG | + | chr1_1:8778125-8778144 | None:intergenic | 45.0% | |
| AGTACGTGGAGAAATTGCCA+GGG | - | chr1_1:8778128-8778147 | Msa0006000:intron | 45.0% | |
| !! | GTTGTTGGTGGTAGTAGTAG+TGG | - | chr1_1:8778157-8778176 | Msa0006000:intron | 45.0% |
| ! | AGTTCTGATATGTGAGCCTG+AGG | - | chr1_1:8778416-8778435 | Msa0006000:intron | 45.0% |
| GTTCTGATATGTGAGCCTGA+GGG | - | chr1_1:8778417-8778436 | Msa0006000:intron | 45.0% | |
| ! | CATTCTAGTTGCAAGCCCTA+TGG | + | chr1_1:8778608-8778627 | None:intergenic | 45.0% |
| ATAAGGTGAACCTGCCATTC+AGG | + | chr1_1:8779095-8779114 | None:intergenic | 45.0% | |
| GCTTAAGGCCCATAGACATT+AGG | + | chr1_1:8779165-8779184 | None:intergenic | 45.0% | |
| GGGCCTTAAGCTTGAATAAC+TGG | - | chr1_1:8779174-8779193 | Msa0006000:intron | 45.0% | |
| !! | AACAAGGTCACTGGTTCTAG+TGG | - | chr1_1:8779254-8779273 | Msa0006000:intron | 45.0% |
| !! | ATTTGATGAGTGGTTCTGGG+AGG | - | chr1_1:8779293-8779312 | Msa0006000:intron | 45.0% |
| TTTCAGTTATGGACGGAGAG+TGG | - | chr1_1:8779495-8779514 | Msa0006000:intron | 45.0% | |
| CGTTACATTCTTAACGGCCT+TGG | - | chr1_1:8779608-8779627 | Msa0006000:intron | 45.0% | |
| !! | GCATGTGGAATAGAGGTGTT+AGG | + | chr1_1:8779650-8779669 | None:intergenic | 45.0% |
| GTACAGAGCATGTGGAATAG+AGG | + | chr1_1:8779657-8779676 | None:intergenic | 45.0% | |
| CTCATGATTAACCAGCGTGT+AGG | + | chr1_1:8779711-8779730 | None:intergenic | 45.0% | |
| GGTTCTGCATTGCAGAAAGA+AGG | - | chr1_1:8779768-8779787 | Msa0006000:intron | 45.0% | |
| ! | AGGCCCCAAGTATGATTTTC+AGG | + | chr1_1:8779933-8779952 | None:intergenic | 45.0% |
| TGAAAATCATACTTGGGGCC+TGG | - | chr1_1:8779932-8779951 | Msa0006000:intron | 45.0% | |
| GAAAATCATACTTGGGGCCT+GGG | - | chr1_1:8779933-8779952 | Msa0006000:intron | 45.0% | |
| GACTACACAAGTTCTGTTCC+AGG | + | chr1_1:8779972-8779991 | None:intergenic | 45.0% | |
| !! | TTCAGCGTCCTTGTTGCTTT+GGG | - | chr1_1:8780138-8780157 | Msa0006000:intron | 45.0% |
| TACAAACAGCAGCTCATAGC+TGG | + | chr1_1:8780257-8780276 | None:intergenic | 45.0% | |
| ! | TATTGCTTATGGCTTGCGAC+TGG | - | chr1_1:8780290-8780309 | Msa0006000:CDS | 45.0% |
| ! | ATTGCTTATGGCTTGCGACT+GGG | - | chr1_1:8780291-8780310 | Msa0006000:CDS | 45.0% |
| ! | CACCATTTGGGTTCTTAGGT+TGG | - | chr1_1:8780487-8780506 | Msa0006000:five_prime_UTR | 45.0% |
| !!! | TTTTAAAAATTTGTTAAAAA+TGG | - | chr1_1:8777609-8777628 | Msa0006000:intron | 5.0% |
| GATCAGGGTCTGATAGAGCA+AGG | + | chr1_1:8776248-8776267 | None:intergenic | 50.0% | |
| ! | GGGAGTGTAGAGAGATGATC+AGG | + | chr1_1:8776264-8776283 | None:intergenic | 50.0% |
| GAATGAGCACGTTGAAGGAG+TGG | + | chr1_1:8776285-8776304 | None:intergenic | 50.0% | |
| GGGTAGAAGTGAGTTTAGCG+AGG | + | chr1_1:8776317-8776336 | None:intergenic | 50.0% | |
| CTATCCTGGTGCAGAGCTTA+TGG | - | chr1_1:8776961-8776980 | Msa0006000:intron | 50.0% | |
| GCATGGTCGAGAAAGAACAC+GGG | + | chr1_1:8777105-8777124 | None:intergenic | 50.0% | |
| GACTCATTCCAACCCCTATG+TGG | + | chr1_1:8777458-8777477 | None:intergenic | 50.0% | |
| GCAGATATAGTGGCAGTAGC+AGG | + | chr1_1:8777691-8777710 | None:intergenic | 50.0% | |
| ! | AGGAGCAGACTGGTCAAAAG+AGG | - | chr1_1:8778059-8778078 | Msa0006000:intron | 50.0% |
| GAGTACGTGGAGAAATTGCC+AGG | - | chr1_1:8778127-8778146 | Msa0006000:intron | 50.0% | |
| GTACGTGGAGAAATTGCCAG+GGG | - | chr1_1:8778129-8778148 | Msa0006000:intron | 50.0% | |
| ! | ACGACCTTTCAGGTCGAAGT+TGG | - | chr1_1:8779520-8779539 | Msa0006000:intron | 50.0% |
| GTGTCCAACTTCGACCTGAA+AGG | + | chr1_1:8779527-8779546 | None:intergenic | 50.0% | |
| ! | TGGACACTTGATGACCGTTC+AGG | - | chr1_1:8779540-8779559 | Msa0006000:intron | 50.0% |
| GATGACCGTTCAGGTCGTAA+AGG | - | chr1_1:8779549-8779568 | Msa0006000:intron | 50.0% | |
| !! | GTTGGCCTTTACGACCTGAA+CGG | + | chr1_1:8779557-8779576 | None:intergenic | 50.0% |
| GGATAGGAGTTGCAGTAGGT+TGG | + | chr1_1:8779575-8779594 | None:intergenic | 50.0% | |
| TGCAACTCCTATCCCCGTAA+TGG | - | chr1_1:8779581-8779600 | Msa0006000:intron | 50.0% | |
| ACGATTGCCATTACGGGGAT+AGG | + | chr1_1:8779591-8779610 | None:intergenic | 50.0% | |
| CTACATCCGTACAGAGCATG+TGG | + | chr1_1:8779665-8779684 | None:intergenic | 50.0% | |
| ! | GTTCAGCGTCCTTGTTGCTT+TGG | - | chr1_1:8780137-8780156 | Msa0006000:intron | 50.0% |
| !! | TCAGCGTCCTTGTTGCTTTG+GGG | - | chr1_1:8780139-8780158 | Msa0006000:intron | 50.0% |
| ! | TTGCTTATGGCTTGCGACTG+GGG | - | chr1_1:8780292-8780311 | Msa0006000:CDS | 50.0% |
| CATGAAACTCAAACGCGGAC+AGG | + | chr1_1:8780449-8780468 | None:intergenic | 50.0% | |
| ! | CTGTCCGCGTTTGAGTTTCA+TGG | - | chr1_1:8780447-8780466 | Msa0006000:exon | 50.0% |
| !! | ACATGTTCGGTGTCCGACAC+TGG | - | chr1_1:8776604-8776623 | Msa0006000:intron | 55.0% |
| !! | TGACGTGTCAGTGTCGGTGT+TGG | - | chr1_1:8776675-8776694 | Msa0006000:intron | 55.0% |
| GAGGAAAGCCACATAGGGGT+TGG | - | chr1_1:8777447-8777466 | Msa0006000:intron | 55.0% | |
| TTGCCAGGGGAGGATGTTGT+TGG | - | chr1_1:8778142-8778161 | Msa0006000:intron | 55.0% | |
| GAGAGTGGAGACGACCTTTC+AGG | - | chr1_1:8779510-8779529 | Msa0006000:intron | 55.0% | |
| ACGGGGATAGGAGTTGCAGT+AGG | + | chr1_1:8779579-8779598 | None:intergenic | 55.0% | |
| ACGTGGCTTATCCTACACGC+TGG | - | chr1_1:8779697-8779716 | Msa0006000:intron | 55.0% | |
| ACACGAGACGCGTTCTCCTT+TGG | + | chr1_1:8779859-8779878 | None:intergenic | 55.0% | |
| TGAGTCGCCCCAAAGCAACA+AGG | + | chr1_1:8780149-8780168 | None:intergenic | 55.0% | |
| TGGGGCGACTCATCAAAGCT+TGG | - | chr1_1:8780157-8780176 | Msa0006000:intron | 55.0% | |
| !! | GTACGGTGTCGTGCCAGTGT+CGG | + | chr1_1:8776620-8776639 | None:intergenic | 60.0% |
| GCGGCCGCTATTCCAGTTTC+TGG | + | chr1_1:8777716-8777735 | None:intergenic | 60.0% | |
| CGTGGAGAAATTGCCAGGGG+AGG | - | chr1_1:8778132-8778151 | Msa0006000:intron | 60.0% | |
| CCACCAACAACATCCTCCCC+TGG | + | chr1_1:8778148-8778167 | None:intergenic | 60.0% | |
| CCAGGGGAGGATGTTGTTGG+TGG | - | chr1_1:8778145-8778164 | Msa0006000:intron | 60.0% | |
| ! | GAGGTGTTAGGGGCCACAGA+AGG | + | chr1_1:8779638-8779657 | None:intergenic | 60.0% |
| CGGCCTTGGGACTCCTTCTG+TGG | - | chr1_1:8779622-8779641 | Msa0006000:intron | 65.0% | |
| GGGCCACAGAAGGAGTCCCA+AGG | + | chr1_1:8779628-8779647 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 8776069 | 8780510 | 8776069 | ID=Msa0006000;Name=Msa0006000 |
| chr1_1 | mRNA | 8776069 | 8780510 | 8776069 | ID=Msa0006000-mRNA-1;Parent=Msa0006000;Name=Msa0006000-mRNA-1;_AED=0.14;_eAED=0.14;_QI=60|0.5|0.4|1|0.75|0.8|5|328|154 |
| chr1_1 | exon | 8776069 | 8776478 | 8776069 | ID=Msa0006000-mRNA-1:exon:3108;Parent=Msa0006000-mRNA-1 |
| chr1_1 | exon | 8778451 | 8778556 | 8778451 | ID=Msa0006000-mRNA-1:exon:3107;Parent=Msa0006000-mRNA-1 |
| chr1_1 | exon | 8779737 | 8779786 | 8779737 | ID=Msa0006000-mRNA-1:exon:3106;Parent=Msa0006000-mRNA-1 |
| chr1_1 | exon | 8780095 | 8780104 | 8780095 | ID=Msa0006000-mRNA-1:exon:3105;Parent=Msa0006000-mRNA-1 |
| chr1_1 | exon | 8780234 | 8780510 | 8780234 | ID=Msa0006000-mRNA-1:exon:3104;Parent=Msa0006000-mRNA-1 |
| chr1_1 | five_prime_UTR | 8780451 | 8780510 | 8780451 | ID=Msa0006000-mRNA-1:five_prime_utr;Parent=Msa0006000-mRNA-1 |
| chr1_1 | CDS | 8780234 | 8780450 | 8780234 | ID=Msa0006000-mRNA-1:cds;Parent=Msa0006000-mRNA-1 |
| chr1_1 | CDS | 8780095 | 8780104 | 8780095 | ID=Msa0006000-mRNA-1:cds;Parent=Msa0006000-mRNA-1 |
| chr1_1 | CDS | 8779737 | 8779786 | 8779737 | ID=Msa0006000-mRNA-1:cds;Parent=Msa0006000-mRNA-1 |
| chr1_1 | CDS | 8778451 | 8778556 | 8778451 | ID=Msa0006000-mRNA-1:cds;Parent=Msa0006000-mRNA-1 |
| chr1_1 | CDS | 8776397 | 8776478 | 8776397 | ID=Msa0006000-mRNA-1:cds;Parent=Msa0006000-mRNA-1 |
| chr1_1 | three_prime_UTR | 8776069 | 8776396 | 8776069 | ID=Msa0006000-mRNA-1:three_prime_utr;Parent=Msa0006000-mRNA-1 |
| Gene Sequence |
| Protein sequence |
