Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0372700 | XP_003613699.1 | 84.591 | 318 | 8 | 1 | 1 | 277 | 1 | 318 | 0.0 | 524 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0372700 | sp|B6ZJZ9|PNC1_SOYBN | 74.528 | 318 | 40 | 2 | 1 | 277 | 1 | 318 | 2.32e-154 | 436 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0372700 | G7KCK0 | 84.591 | 318 | 8 | 1 | 1 | 277 | 1 | 318 | 0.0 | 524 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0033970 | Msa0372700 | 0.801426 | 9.053095e-49 | -8.615850e-47 |
| Msa0035510 | Msa0372700 | -0.801429 | 9.043411e-49 | -8.615850e-47 |
| Msa0035590 | Msa0372700 | -0.805052 | 1.607584e-49 | -8.615850e-47 |
| Msa0036250 | Msa0372700 | -0.815899 | 7.297997e-52 | -8.615850e-47 |
| Msa0069150 | Msa0372700 | -0.820279 | 7.458672e-53 | -8.615850e-47 |
| Msa0087550 | Msa0372700 | 0.806552 | 7.781470e-50 | -8.615850e-47 |
| Msa0132430 | Msa0372700 | 0.803038 | 4.218177e-49 | -8.615850e-47 |
| Msa0134270 | Msa0372700 | 0.810827 | 9.499173e-51 | -8.615850e-47 |
| Msa0182020 | Msa0372700 | 0.824286 | 8.764546e-54 | -8.615850e-47 |
| Msa0199160 | Msa0372700 | -0.810538 | 1.096938e-50 | -8.615850e-47 |
| Msa0237650 | Msa0372700 | -0.820480 | 6.710181e-53 | -8.615850e-47 |
| Msa0372700 | Msa0428720 | -0.807818 | 4.198232e-50 | -8.615850e-47 |
| Msa0372700 | Msa0460170 | -0.805104 | 1.568130e-49 | -8.615850e-47 |
| Msa0372700 | Msa0560280 | 0.823960 | 1.045247e-53 | -8.615850e-47 |
| Msa0372700 | Msa0569580 | -0.814884 | 1.227405e-51 | -8.615850e-47 |
| Msa0372700 | Msa0572730 | -0.808743 | 2.666201e-50 | -8.615850e-47 |
| Msa0372700 | Msa0573940 | -0.814370 | 1.594967e-51 | -8.615850e-47 |
| Msa0372700 | Msa0633730 | 0.804256 | 2.357094e-49 | -8.615850e-47 |
| Msa0372700 | Msa0638820 | 0.822103 | 2.833527e-53 | -8.615850e-47 |
| Msa0372700 | Msa0652700 | 0.807981 | 3.874743e-50 | -8.615850e-47 |
| Msa0372700 | Msa0697510 | 0.810569 | 1.079946e-50 | -8.615850e-47 |
| Msa0372700 | Msa0697520 | 0.820694 | 5.990445e-53 | -8.615850e-47 |
| Msa0372700 | Msa1204240 | 0.801969 | 7.005693e-49 | -8.615850e-47 |
| Msa0372700 | Msa1312770 | 0.802365 | 5.807228e-49 | -8.615850e-47 |
| Msa0372700 | Msa1375730 | 0.800032 | 1.742988e-48 | -8.615850e-47 |
| Msa0372700 | Msa1375980 | -0.808163 | 3.544174e-50 | -8.615850e-47 |
| Msa0372700 | Msa1377980 | -0.809110 | 2.224336e-50 | -8.615850e-47 |
| Msa0372700 | Msa1408280 | -0.807690 | 4.469412e-50 | -8.615850e-47 |
| Msa0372700 | Msa1454300 | -0.802154 | 6.417313e-49 | -8.615850e-47 |
| Msa0372700 | Msa1456180 | -0.810772 | 9.763281e-51 | -8.615850e-47 |
| Msa0315720 | Msa0372700 | -0.817012 | 4.111109e-52 | -8.615850e-47 |
| Msa0333350 | Msa0372700 | -0.800440 | 1.440073e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0372700 | MtrunA17_Chr5g0416661 | 84.591 | 318 | 8 | 1 | 1 | 277 | 1 | 318 | 0.0 | 524 |
| Msa0372700 | MtrunA17_Chr7g0231821 | 81.081 | 259 | 8 | 1 | 1 | 218 | 1 | 259 | 2.52e-134 | 380 |
| Msa0372700 | MtrunA17_Chr1g0205941 | 58.387 | 310 | 86 | 3 | 1 | 267 | 1 | 310 | 1.84e-120 | 347 |
| Msa0372700 | MtrunA17_Chr5g0436571 | 26.378 | 254 | 136 | 7 | 47 | 260 | 81 | 323 | 2.44e-18 | 83.6 |
| Msa0372700 | MtrunA17_Chr1g0163521 | 23.305 | 236 | 133 | 4 | 59 | 252 | 122 | 351 | 3.68e-12 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0372700 | AT3G05290.1 | 60.802 | 324 | 76 | 4 | 1 | 276 | 1 | 321 | 4.00e-131 | 374 |
| Msa0372700 | AT5G27520.1 | 59.875 | 319 | 84 | 3 | 1 | 276 | 3 | 320 | 2.73e-125 | 360 |
| Msa0372700 | AT2G39970.1 | 26.939 | 245 | 132 | 6 | 47 | 252 | 81 | 317 | 5.21e-19 | 85.5 |
Find 88 sgRNAs with CRISPR-Local
Find 249 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCATCGCTGTCTGCGTTTA+TGG | 0.113898 | 3_1:-71413231 | Msa0372700:CDS |
| TTCTTATACTTGCAATTAAA+AGG | 0.195595 | 3_1:-71412847 | Msa0372700:CDS |
| TATGTAGTAACTTCAGTTTC+AGG | 0.205298 | 3_1:-71412422 | Msa0372700:three_prime_UTR |
| TTACTTTAAAAGACTGTATC+TGG | 0.233981 | 3_1:-71414369 | Msa0372700:CDS |
| TCAAGCTGAGGCACGTTCTA+AGG | 0.234200 | 3_1:-71416029 | Msa0372700:CDS |
| CACCTCTAACCCTGCAATTC+AGG | 0.243289 | 3_1:-71413457 | Msa0372700:intron |
| TGCGCATTTGCGTAGATTCT+TGG | 0.250476 | 3_1:+71412643 | None:intergenic |
| TTGTTAATTGCTGCTGCTGC+TGG | 0.271660 | 3_1:-71414308 | Msa0372700:CDS |
| AGCTTGATACTTTGTCTTGC+AGG | 0.275313 | 3_1:+71416045 | None:intergenic |
| CCAATGTTCTCTGCGGAATA+TGG | 0.298856 | 3_1:-71412985 | Msa0372700:CDS |
| ATGGAAACAGGAGGGCATAT+TGG | 0.346257 | 3_1:-71412966 | Msa0372700:CDS |
| GCTTGAGCTACCTGAATTGC+AGG | 0.374609 | 3_1:+71413447 | None:intergenic |
| ATATAAGTTAAGAATAGTTT+AGG | 0.374653 | 3_1:-71412475 | Msa0372700:three_prime_UTR |
| TGGAAACAGGAGGGCATATT+GGG | 0.376453 | 3_1:-71412965 | Msa0372700:CDS |
| TGTTAATTGCTGCTGCTGCT+GGG | 0.386082 | 3_1:-71414307 | Msa0372700:CDS |
| CACTCCATGTGCCTTCTGTA+AGG | 0.389324 | 3_1:+71413514 | None:intergenic |
| GTCTAACATATCCTGCTATC+AGG | 0.400419 | 3_1:-71413169 | Msa0372700:intron |
| AAAAGATTTCTGCTACTACT+TGG | 0.401800 | 3_1:-71412871 | Msa0372700:CDS |
| TACCTGAATTGCAGGGTTAG+AGG | 0.402089 | 3_1:+71413455 | None:intergenic |
| GAGAAAGATGAACGTGGATC+TGG | 0.407048 | 3_1:-71416140 | Msa0372700:exon |
| AGATACTCCTTTCTCAGCTA+TGG | 0.412205 | 3_1:+71413256 | None:intergenic |
| TCCTTGGCAGAAGCCACTTC+CGG | 0.416039 | 3_1:-71416115 | Msa0372700:CDS |
| CCGTCTCAGCTCTAACGAAA+TGG | 0.421822 | 3_1:+71412728 | None:intergenic |
| AACTTATATCCTTCTGATGT+AGG | 0.438182 | 3_1:+71412489 | None:intergenic |
| CTGAAGTTACTACATAAAAG+AGG | 0.440129 | 3_1:+71412429 | None:intergenic |
| CAAGTTTGCTCTTGTTCCAA+TGG | 0.441171 | 3_1:+71414328 | None:intergenic |
| GAAGCCACTTCCGGAGCTAT+AGG | 0.447170 | 3_1:-71416106 | Msa0372700:CDS |
| CCCTGGATACAGCCTCTTCA+AGG | 0.449791 | 3_1:-71413581 | Msa0372700:CDS |
| GTCCCTTTGGAAAGGCTAAA+GGG | 0.451978 | 3_1:-71413548 | Msa0372700:CDS |
| TCCTTGAAGAGGCTGTATCC+AGG | 0.461040 | 3_1:+71413580 | None:intergenic |
| AAAGATTTCTGCTACTACTT+GGG | 0.468655 | 3_1:-71412870 | Msa0372700:CDS |
| ATAAACGCAGACAGCGATGC+TGG | 0.471939 | 3_1:+71413233 | None:intergenic |
| AGTCCCTTTGGAAAGGCTAA+AGG | 0.474955 | 3_1:-71413549 | Msa0372700:CDS |
| GAACGTGGATCTGGAATCCT+TGG | 0.478004 | 3_1:-71416131 | Msa0372700:CDS |
| AGCATTGCTCTTGATGATCA+AGG | 0.485915 | 3_1:-71412894 | Msa0372700:CDS |
| TCTCTGCGGAATATGGAAAC+AGG | 0.492285 | 3_1:-71412978 | Msa0372700:CDS |
| AAAAGTGGGTATAAATCCAT+TGG | 0.494876 | 3_1:-71414344 | Msa0372700:CDS |
| AGGATGCAGACAAGTCCCTT+TGG | 0.495911 | 3_1:-71413561 | Msa0372700:CDS |
| TAAGACTTTCAGCCTTGCTA+TGG | 0.505896 | 3_1:+71412615 | None:intergenic |
| ACTCCATGTGCCTTCTGTAA+GGG | 0.511405 | 3_1:+71413515 | None:intergenic |
| TTTGATTATTTGCCAGTACT+CGG | 0.514328 | 3_1:+71413279 | None:intergenic |
| ACATGGAGTGATGCATTTGA+TGG | 0.529163 | 3_1:-71413501 | Msa0372700:CDS |
| AGGTATCTATTACTCCCAAA+GGG | 0.530893 | 3_1:-71412827 | Msa0372700:CDS |
| CCATATTCCGCAGAGAACAT+TGG | 0.534435 | 3_1:+71412985 | None:intergenic |
| AATCAAACCATAGCTGAGAA+AGG | 0.535904 | 3_1:-71413263 | Msa0372700:CDS |
| AGCCCTTTAGCCTTTCCAAA+GGG | 0.538176 | 3_1:+71413546 | None:intergenic |
| AAGCAATGATCCTATAGCTC+CGG | 0.539116 | 3_1:+71416096 | None:intergenic |
| CCTTGAAGAGGCTGTATCCA+GGG | 0.540930 | 3_1:+71413581 | None:intergenic |
| AAGGTATCTATTACTCCCAA+AGG | 0.541045 | 3_1:-71412828 | Msa0372700:CDS |
| GATAGCAGGATATGTTAGAC+AGG | 0.545301 | 3_1:+71413172 | None:intergenic |
| TGAAACTGCACCTAAAAGAA+AGG | 0.545604 | 3_1:+71413208 | None:intergenic |
| ACAATTATATACCTGATAGC+AGG | 0.548603 | 3_1:+71413158 | None:intergenic |
| GTTAATTGCTGCTGCTGCTG+GGG | 0.551615 | 3_1:-71414306 | Msa0372700:CDS |
| TCCGGAAGTGGCTTCTGCCA+AGG | 0.556060 | 3_1:+71416114 | None:intergenic |
| ATCTATTACTCCCAAAGGGT+AGG | 0.558027 | 3_1:-71412823 | Msa0372700:CDS |
| TCATTGATACAGAGAAGAAG+AGG | 0.559350 | 3_1:-71416177 | Msa0372700:five_prime_UTR |
| CCATTTCGTTAGAGCTGAGA+CGG | 0.559911 | 3_1:-71412728 | Msa0372700:three_prime_UTR |
| CAAGCTGAGGCACGTTCTAA+GGG | 0.562422 | 3_1:-71416028 | Msa0372700:CDS |
| TAGCCCTTTAGCCTTTCCAA+AGG | 0.584771 | 3_1:+71413545 | None:intergenic |
| TCTATTACTCCCAAAGGGTA+GGG | 0.587510 | 3_1:-71412822 | Msa0372700:CDS |
| CGTCACTGCCATCACAACTC+AGG | 0.587603 | 3_1:-71414282 | Msa0372700:intron |
| TGTGGAAGTCCTACATCAGA+AGG | 0.587707 | 3_1:-71412498 | Msa0372700:three_prime_UTR |
| TTTGTCTTGCAGGTATCAAG+AGG | 0.588173 | 3_1:+71416055 | None:intergenic |
| CTGAGTTGTGATGGCAGTGA+CGG | 0.590782 | 3_1:+71414283 | None:intergenic |
| TGATCCTATAGCTCCGGAAG+TGG | 0.597767 | 3_1:+71416102 | None:intergenic |
| ACTTGTCTGCATCCTTGAAG+AGG | 0.599190 | 3_1:+71413569 | None:intergenic |
| CTACCTCACCTGAGTTGTGA+TGG | 0.602227 | 3_1:+71414274 | None:intergenic |
| TGAAGTTACTACATAAAAGA+GGG | 0.604968 | 3_1:+71412430 | None:intergenic |
| AGGGTTAGAGGTGAGCATCA+AGG | 0.605239 | 3_1:+71413467 | None:intergenic |
| TGTTCTACATCAACAAGCGA+AGG | 0.608992 | 3_1:+71412672 | None:intergenic |
| CATAATTCAAGCTGAAGACA+CGG | 0.611095 | 3_1:-71413053 | Msa0372700:CDS |
| GCAGACAAGTCCCTTTGGAA+AGG | 0.616563 | 3_1:-71413556 | Msa0372700:CDS |
| TGAGCATCAAGGAAATGCTA+AGG | 0.623451 | 3_1:+71413478 | None:intergenic |
| CTTGAGCTACCTGAATTGCA+GGG | 0.625040 | 3_1:+71413448 | None:intergenic |
| TTGTCTTGCAGGTATCAAGA+GGG | 0.627769 | 3_1:+71416056 | None:intergenic |
| GAACCCTTACAGAAGGCACA+TGG | 0.633064 | 3_1:-71413518 | Msa0372700:CDS |
| TATCAATGACACGAGTGTCA+AGG | 0.634472 | 3_1:+71416191 | None:intergenic |
| CTACTGAGAACCCTTACAGA+AGG | 0.636823 | 3_1:-71413525 | Msa0372700:CDS |
| CTGCGGAATATGGAAACAGG+AGG | 0.641129 | 3_1:-71412975 | Msa0372700:CDS |
| GTTCTACATCAACAAGCGAA+GGG | 0.654780 | 3_1:+71412673 | None:intergenic |
| ATGCGCAATAGACCATAGCA+AGG | 0.658589 | 3_1:-71412627 | Msa0372700:three_prime_UTR |
| CTTGAAGAGGCTGTATCCAG+GGG | 0.660319 | 3_1:+71413582 | None:intergenic |
| TGACACGAGTGTCAAGGTGG+TGG | 0.668703 | 3_1:+71416197 | None:intergenic |
| TGCGGAATATGGAAACAGGA+GGG | 0.672014 | 3_1:-71412974 | Msa0372700:CDS |
| CAAGACAAAGTATCAAGCTG+AGG | 0.676971 | 3_1:-71416041 | Msa0372700:CDS |
| CAATGACACGAGTGTCAAGG+TGG | 0.699688 | 3_1:+71416194 | None:intergenic |
| ACTGTGTCCAATGTTCTCTG+CGG | 0.712853 | 3_1:-71412992 | Msa0372700:CDS |
| GAAGAAGAGAAAGATGAACG+TGG | 0.716099 | 3_1:-71416146 | Msa0372700:exon |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAGTATTTTTTAATAAAACT+TGG | + | chr3_1:71413217-71413236 | None:intergenic | 10.0% |
| !!! | TTTTATCAACAAAAAAAAAA+AGG | + | chr3_1:71414345-71414364 | None:intergenic | 10.0% |
| !! | AAAGAAGATGAATAATTAAA+GGG | + | chr3_1:71412614-71412633 | None:intergenic | 15.0% |
| !! | ATTTATACTTGAAAGTAATT+TGG | - | chr3_1:71413578-71413597 | Msa0372700:CDS | 15.0% |
| !!! | TTTTTTTTTGTTGATAAAAG+AGG | - | chr3_1:71414346-71414365 | Msa0372700:CDS | 15.0% |
| !!! | TTTTTTTGTAACTATGTTAT+AGG | + | chr3_1:71414737-71414756 | None:intergenic | 15.0% |
| !!! | TTTGTTTATAGTTGATTTTT+TGG | - | chr3_1:71416062-71416081 | Msa0372700:CDS | 15.0% |
| !! | ATATAAGTTAAGAATAGTTT+AGG | - | chr3_1:71416113-71416132 | Msa0372700:CDS | 15.0% |
| !! | CAAAGAAGATGAATAATTAA+AGG | + | chr3_1:71412615-71412634 | None:intergenic | 20.0% |
| !!! | TTTTAATAAAACTTGGTATC+TGG | + | chr3_1:71413210-71413229 | None:intergenic | 20.0% |
| !!! | ATTTGAACTATTATTTTCCA+CGG | - | chr3_1:71414003-71414022 | Msa0372700:intron | 20.0% |
| !! | CTAAAACTAAAACTACAAAT+AGG | + | chr3_1:71414380-71414399 | None:intergenic | 20.0% |
| !!! | CTATTTGTAGTTTTAGTTTT+AGG | - | chr3_1:71414378-71414397 | Msa0372700:intron | 20.0% |
| !! | TTTATAACGATTATTAGCTA+TGG | + | chr3_1:71414439-71414458 | None:intergenic | 20.0% |
| !! | AGCTAATAATCGTTATAAAT+TGG | - | chr3_1:71414440-71414459 | Msa0372700:intron | 20.0% |
| !! | AAATTGTGATCTAAATCTTA+TGG | - | chr3_1:71414485-71414504 | Msa0372700:intron | 20.0% |
| !!! | TATGGTATGATTATTTTTGT+TGG | - | chr3_1:71414516-71414535 | Msa0372700:intron | 20.0% |
| !!! | CGAACATATTATTTTTTGTT+TGG | - | chr3_1:71414896-71414915 | Msa0372700:intron | 20.0% |
| !! | AAAAAAAAACACACAAATGA+TGG | + | chr3_1:71415186-71415205 | None:intergenic | 20.0% |
| !!! | TAAGTTGCATTTTGTTTAAA+AGG | - | chr3_1:71415211-71415230 | Msa0372700:intron | 20.0% |
| !! | ATTTCAAAGTTAAGCTATAT+TGG | + | chr3_1:71415249-71415268 | None:intergenic | 20.0% |
| !!! | ATCTTTTTTTATCTTCGTAT+AGG | - | chr3_1:71415504-71415523 | Msa0372700:intron | 20.0% |
| !! | TTCTTATACTTGCAATTAAA+AGG | - | chr3_1:71415741-71415760 | Msa0372700:intron | 20.0% |
| ! | ACAAAAACATTCTTAAACAG+AGG | + | chr3_1:71412885-71412904 | None:intergenic | 25.0% |
| !! | TTTTGTATGTCAATTATCCA+AGG | - | chr3_1:71413058-71413077 | Msa0372700:CDS | 25.0% |
| !!! | TGTGTTCGAAAAGTTTTTTT+TGG | - | chr3_1:71413265-71413284 | Msa0372700:CDS | 25.0% |
| !!! | GTGTTCGAAAAGTTTTTTTT+GGG | - | chr3_1:71413266-71413285 | Msa0372700:CDS | 25.0% |
| !!! | TGTTCGAAAAGTTTTTTTTG+GGG | - | chr3_1:71413267-71413286 | Msa0372700:CDS | 25.0% |
| ! | ATCACTAGGATTAGATTTAT+TGG | - | chr3_1:71413517-71413536 | Msa0372700:CDS | 25.0% |
| !! | TATGATTTTCCTCAATTGAA+TGG | + | chr3_1:71413660-71413679 | None:intergenic | 25.0% |
| ! | TCTTATGAGAAACAATTGAA+TGG | - | chr3_1:71413680-71413699 | Msa0372700:intron | 25.0% |
| ! | ACAATGTAAGATATACATTC+TGG | + | chr3_1:71413865-71413884 | None:intergenic | 25.0% |
| ! | AGTACATAAACCAAAGAAAT+CGG | + | chr3_1:71414045-71414064 | None:intergenic | 25.0% |
| !!! | ATTGAAGATTTTTTGTTCCA+AGG | + | chr3_1:71414162-71414181 | None:intergenic | 25.0% |
| !! | TTACTTTAAAAGACTGTATC+TGG | - | chr3_1:71414219-71414238 | Msa0372700:intron | 25.0% |
| !!! | ATAAATTGGCATTGTTGTTT+TGG | - | chr3_1:71414454-71414473 | Msa0372700:intron | 25.0% |
| !!! | AATCTTATGGTTTTGCTTTA+TGG | - | chr3_1:71414498-71414517 | Msa0372700:intron | 25.0% |
| ! | CAAGTAGATATAATAGATCA+CGG | - | chr3_1:71414850-71414869 | Msa0372700:intron | 25.0% |
| ! | TGAAGTTACTACATAAAAGA+GGG | + | chr3_1:71416161-71416180 | None:intergenic | 25.0% |
| AGCATGATCTTTACAACAAA+GGG | + | chr3_1:71412647-71412666 | None:intergenic | 30.0% | |
| AAGCATGATCTTTACAACAA+AGG | + | chr3_1:71412648-71412667 | None:intergenic | 30.0% | |
| ! | TTTGTGTTTGATCGTTGTTT+TGG | - | chr3_1:71412690-71412709 | Msa0372700:three_prime_UTR | 30.0% |
| !! | TTGTGTTTGATCGTTGTTTT+GGG | - | chr3_1:71412691-71412710 | Msa0372700:three_prime_UTR | 30.0% |
| !!! | TGCTATTTTGTTCTATGTTG+TGG | - | chr3_1:71412839-71412858 | Msa0372700:CDS | 30.0% |
| ! | TATTTTGTTCTATGTTGTGG+TGG | - | chr3_1:71412842-71412861 | Msa0372700:CDS | 30.0% |
| ! | ATTTTGTTCTATGTTGTGGT+GGG | - | chr3_1:71412843-71412862 | Msa0372700:CDS | 30.0% |
| ! | TAATCCTAGAAGTGTAATAG+TGG | - | chr3_1:71413346-71413365 | Msa0372700:intron | 30.0% |
| TAAATCTAATCCTAGTGATC+AGG | + | chr3_1:71413516-71413535 | None:intergenic | 30.0% | |
| TACATTTCACCATTCAATTG+AGG | - | chr3_1:71413648-71413667 | Msa0372700:intron | 30.0% | |
| CTGTAATTATCAGATTCGAT+TGG | - | chr3_1:71413782-71413801 | Msa0372700:intron | 30.0% | |
| ATGTAAGATATACATTCTGG+TGG | + | chr3_1:71413862-71413881 | None:intergenic | 30.0% | |
| CTTACATTGTTGTCAAATAG+TGG | - | chr3_1:71413875-71413894 | Msa0372700:intron | 30.0% | |
| AAAAGTGGGTATAAATCCAT+TGG | - | chr3_1:71414244-71414263 | Msa0372700:intron | 30.0% | |
| TTGGAAGAGATGAATAAGTT+TGG | + | chr3_1:71414565-71414584 | None:intergenic | 30.0% | |
| TTTGATTATTTGCCAGTACT+CGG | + | chr3_1:71415312-71415331 | None:intergenic | 30.0% | |
| ACAATTATATACCTGATAGC+AGG | + | chr3_1:71415433-71415452 | None:intergenic | 30.0% | |
| AAAAGATTTCTGCTACTACT+TGG | - | chr3_1:71415717-71415736 | Msa0372700:intron | 30.0% | |
| AAAGATTTCTGCTACTACTT+GGG | - | chr3_1:71415718-71415737 | Msa0372700:intron | 30.0% | |
| !!! | GTTGATTTTTTGGTATGTTG+TGG | - | chr3_1:71416072-71416091 | Msa0372700:CDS | 30.0% |
| AACTTATATCCTTCTGATGT+AGG | + | chr3_1:71416102-71416121 | None:intergenic | 30.0% | |
| CTGAAGTTACTACATAAAAG+AGG | + | chr3_1:71416162-71416181 | None:intergenic | 30.0% | |
| TATGTAGTAACTTCAGTTTC+AGG | - | chr3_1:71416166-71416185 | Msa0372700:five_prime_UTR | 30.0% | |
| TCATTGATACAGAGAAGAAG+AGG | - | chr3_1:71412411-71412430 | Msa0372700:three_prime_UTR | 35.0% | |
| TCTTTACAACAAAGGGTAAC+AGG | + | chr3_1:71412640-71412659 | None:intergenic | 35.0% | |
| !!! | GATTGCTGAGTTGTTTTGAT+TGG | - | chr3_1:71412733-71412752 | Msa0372700:three_prime_UTR | 35.0% |
| AGCTGTATTGTCAATTTGTG+TGG | - | chr3_1:71413094-71413113 | Msa0372700:intron | 35.0% | |
| GCTGTATTGTCAATTTGTGT+GGG | - | chr3_1:71413095-71413114 | Msa0372700:intron | 35.0% | |
| ! | TGTGTGGGTTATTCCATATA+TGG | - | chr3_1:71413110-71413129 | Msa0372700:intron | 35.0% |
| !! | TTCCATATATGGTTTTGCTC+TGG | - | chr3_1:71413121-71413140 | Msa0372700:intron | 35.0% |
| ACTTATTGGACTAAGAGTCA+TGG | - | chr3_1:71413322-71413341 | Msa0372700:intron | 35.0% | |
| CAATCCACTATTACACTTCT+AGG | + | chr3_1:71413353-71413372 | None:intergenic | 35.0% | |
| !! | CTAGAAGTGTAATAGTGGAT+TGG | - | chr3_1:71413351-71413370 | Msa0372700:intron | 35.0% |
| TGCAATTCAACTCTCATTGA+AGG | + | chr3_1:71413449-71413468 | None:intergenic | 35.0% | |
| TGATCAGGTGACATTGTAAA+AGG | + | chr3_1:71413501-71413520 | None:intergenic | 35.0% | |
| TAGATTTATTGGAGAACCAG+AGG | - | chr3_1:71413528-71413547 | Msa0372700:CDS | 35.0% | |
| GTAATTTGGATCAAAGCTTG+TGG | - | chr3_1:71413592-71413611 | Msa0372700:intron | 35.0% | |
| ! | TTGATTGTTTGTTGCATGTG+TGG | - | chr3_1:71413732-71413751 | Msa0372700:intron | 35.0% |
| !! | TTGTCAAATAGTGGTGCTAT+AGG | - | chr3_1:71413884-71413903 | Msa0372700:intron | 35.0% |
| AACAGTGTATTGCAAAACAG+TGG | + | chr3_1:71413932-71413951 | None:intergenic | 35.0% | |
| !! | TACAAAGTGCTGTCAAATAG+CGG | - | chr3_1:71413955-71413974 | Msa0372700:intron | 35.0% |
| !! | ATTGACATCACCGATTTCTT+TGG | - | chr3_1:71414032-71414051 | Msa0372700:intron | 35.0% |
| !!! | TGTACTTGTTTTACCTTTGC+AGG | - | chr3_1:71414074-71414093 | Msa0372700:intron | 35.0% |
| GAATCTCTCTGATGTGTTAT+GGG | - | chr3_1:71414096-71414115 | Msa0372700:intron | 35.0% | |
| GTAGACAAACTGTGAAAAGA+AGG | + | chr3_1:71414185-71414204 | None:intergenic | 35.0% | |
| TCACAGTTTGTCTACTTCTA+TGG | - | chr3_1:71414190-71414209 | Msa0372700:intron | 35.0% | |
| AGACTGTATCTGGAAAAAAG+TGG | - | chr3_1:71414229-71414248 | Msa0372700:intron | 35.0% | |
| GACTGTATCTGGAAAAAAGT+GGG | - | chr3_1:71414230-71414249 | Msa0372700:intron | 35.0% | |
| !! | TTTTGTTGGTGTTTCACTGT+TGG | - | chr3_1:71414530-71414549 | Msa0372700:intron | 35.0% |
| AACATTACGTTTGTCTGAGT+GGG | - | chr3_1:71414583-71414602 | Msa0372700:intron | 35.0% | |
| AAACACACAAATGATGGTTC+CGG | + | chr3_1:71415180-71415199 | None:intergenic | 35.0% | |
| AATCAAACCATAGCTGAGAA+AGG | - | chr3_1:71415325-71415344 | Msa0372700:intron | 35.0% | |
| TGAAACTGCACCTAAAAGAA+AGG | + | chr3_1:71415383-71415402 | None:intergenic | 35.0% | |
| !!! | TTCCAACTTGTTTTGATCTG+CGG | - | chr3_1:71415456-71415475 | Msa0372700:intron | 35.0% |
| CATAATTCAAGCTGAAGACA+CGG | - | chr3_1:71415535-71415554 | Msa0372700:intron | 35.0% | |
| ! | AGAACATTGGACACAGTTTT+CGG | + | chr3_1:71415593-71415612 | None:intergenic | 35.0% |
| !! | GGCATATTGGGCTATTTTAA+AGG | - | chr3_1:71415635-71415654 | Msa0372700:intron | 35.0% |
| ! | AAGGTATCTATTACTCCCAA+AGG | - | chr3_1:71415760-71415779 | Msa0372700:intron | 35.0% |
| AGGTATCTATTACTCCCAAA+GGG | - | chr3_1:71415761-71415780 | Msa0372700:intron | 35.0% | |
| !!! | TTCTTTTTCTGGCTTCTCTT+TGG | - | chr3_1:71415885-71415904 | Msa0372700:intron | 35.0% |
| TATCAATGACACGAGTGTCA+AGG | + | chr3_1:71412400-71412419 | None:intergenic | 40.0% | |
| GAAGAAGAGAAAGATGAACG+TGG | - | chr3_1:71412442-71412461 | Msa0372700:three_prime_UTR | 40.0% | |
| AAGCAATGATCCTATAGCTC+CGG | + | chr3_1:71412495-71412514 | None:intergenic | 40.0% | |
| TTGTCTTGCAGGTATCAAGA+GGG | + | chr3_1:71412535-71412554 | None:intergenic | 40.0% | |
| TTTGTCTTGCAGGTATCAAG+AGG | + | chr3_1:71412536-71412555 | None:intergenic | 40.0% | |
| AGCTTGATACTTTGTCTTGC+AGG | + | chr3_1:71412546-71412565 | None:intergenic | 40.0% | |
| ! | CAAGACAAAGTATCAAGCTG+AGG | - | chr3_1:71412547-71412566 | Msa0372700:three_prime_UTR | 40.0% |
| !!! | TGTTTGATCGTTGTTTTGGG+TGG | - | chr3_1:71412694-71412713 | Msa0372700:three_prime_UTR | 40.0% |
| !!! | TGCTGAGTTGTTTTGATTGG+TGG | - | chr3_1:71412736-71412755 | Msa0372700:three_prime_UTR | 40.0% |
| AGCTCAAACTACATACTCCT+TGG | + | chr3_1:71413078-71413097 | None:intergenic | 40.0% | |
| AGCCAGAGCAAAACCATATA+TGG | + | chr3_1:71413126-71413145 | None:intergenic | 40.0% | |
| TTAAATAGACCCCCCAATAG+TGG | - | chr3_1:71413146-71413165 | Msa0372700:intron | 40.0% | |
| AAAACTTGGTATCTGGTCGA+AGG | + | chr3_1:71413203-71413222 | None:intergenic | 40.0% | |
| ACTCTTAGTCCAATAAGTGC+CGG | + | chr3_1:71413320-71413339 | None:intergenic | 40.0% | |
| !! | AGTGTAATAGTGGATTGGTG+TGG | - | chr3_1:71413356-71413375 | Msa0372700:intron | 40.0% |
| ! | AGGTTGAATGCTGTTAGCTT+TGG | - | chr3_1:71413387-71413406 | Msa0372700:intron | 40.0% |
| TACAATGTCACCTGATCACT+AGG | - | chr3_1:71413503-71413522 | Msa0372700:CDS | 40.0% | |
| AAAAACCTTCGCCAAAACCA+TGG | + | chr3_1:71413555-71413574 | None:intergenic | 40.0% | |
| GGAATCTCTCTGATGTGTTA+TGG | - | chr3_1:71414095-71414114 | Msa0372700:intron | 40.0% | |
| GGTAAAGGGAAAGAATCTGA+CGG | + | chr3_1:71414135-71414154 | None:intergenic | 40.0% | |
| CAGATTCTTTCCCTTTACCA+AGG | - | chr3_1:71414136-71414155 | Msa0372700:intron | 40.0% | |
| !!! | GATTTTTTGTTCCAAGGCCT+TGG | + | chr3_1:71414156-71414175 | None:intergenic | 40.0% |
| ! | CAAGTTTGCTCTTGTTCCAA+TGG | + | chr3_1:71414263-71414282 | None:intergenic | 40.0% |
| CACTCAGACAAACGTAATGT+TGG | + | chr3_1:71414584-71414603 | None:intergenic | 40.0% | |
| CAACATTACGTTTGTCTGAG+TGG | - | chr3_1:71414582-71414601 | Msa0372700:intron | 40.0% | |
| TGTCTGAGTGGGATTAATCT+CGG | - | chr3_1:71414594-71414613 | Msa0372700:intron | 40.0% | |
| AATCTCGGATCACTTAAGCA+AGG | - | chr3_1:71414609-71414628 | Msa0372700:intron | 40.0% | |
| CGAAATATTCACCTCCATCA+GGG | + | chr3_1:71414712-71414731 | None:intergenic | 40.0% | |
| ACATGGAGTGATGCATTTGA+TGG | - | chr3_1:71415087-71415106 | Msa0372700:intron | 40.0% | |
| TGAGCATCAAGGAAATGCTA+AGG | + | chr3_1:71415113-71415132 | None:intergenic | 40.0% | |
| ! | TCAAGCTAGTTTGTCTCAAC+CGG | - | chr3_1:71415158-71415177 | Msa0372700:intron | 40.0% |
| AGATACTCCTTTCTCAGCTA+TGG | + | chr3_1:71415335-71415354 | None:intergenic | 40.0% | |
| ! | GCGTTTATGGCCTTTCTTTT+AGG | - | chr3_1:71415370-71415389 | Msa0372700:intron | 40.0% |
| GATAGCAGGATATGTTAGAC+AGG | + | chr3_1:71415419-71415438 | None:intergenic | 40.0% | |
| GTCTAACATATCCTGCTATC+AGG | - | chr3_1:71415419-71415438 | Msa0372700:intron | 40.0% | |
| ! | GCAGATCAAAACAAGTTGGA+AGG | + | chr3_1:71415457-71415476 | None:intergenic | 40.0% |
| ! | CGGCGATTTTGTCAGTTTTT+GGG | + | chr3_1:71415573-71415592 | None:intergenic | 40.0% |
| ! | TCGGCGATTTTGTCAGTTTT+TGG | + | chr3_1:71415574-71415593 | None:intergenic | 40.0% |
| ! | AGCATTGCTCTTGATGATCA+AGG | - | chr3_1:71415694-71415713 | Msa0372700:intron | 40.0% |
| ATCTATTACTCCCAAAGGGT+AGG | - | chr3_1:71415765-71415784 | Msa0372700:intron | 40.0% | |
| TCTATTACTCCCAAAGGGTA+GGG | - | chr3_1:71415766-71415785 | Msa0372700:intron | 40.0% | |
| ! | CGTTTTTAACCCTACCCTTT+GGG | + | chr3_1:71415778-71415797 | None:intergenic | 40.0% |
| ! | ACGTTTTTAACCCTACCCTT+TGG | + | chr3_1:71415779-71415798 | None:intergenic | 40.0% |
| GTTCTACATCAACAAGCGAA+GGG | + | chr3_1:71415918-71415937 | None:intergenic | 40.0% | |
| TGTTCTACATCAACAAGCGA+AGG | + | chr3_1:71415919-71415938 | None:intergenic | 40.0% | |
| TAAGACTTTCAGCCTTGCTA+TGG | + | chr3_1:71415976-71415995 | None:intergenic | 40.0% | |
| GAGAAAGATGAACGTGGATC+TGG | - | chr3_1:71412448-71412467 | Msa0372700:three_prime_UTR | 45.0% | |
| ! | GGATTGGTGTGGACATTGAA+AGG | - | chr3_1:71413367-71413386 | Msa0372700:intron | 45.0% |
| AATGTGTCAATGCGTCAGGT+TGG | - | chr3_1:71413615-71413634 | Msa0372700:intron | 45.0% | |
| GAAATCGGTGATGTCAATCG+AGG | + | chr3_1:71414030-71414049 | None:intergenic | 45.0% | |
| CATCAGAGAGATTCCTGCAA+AGG | + | chr3_1:71414090-71414109 | None:intergenic | 45.0% | |
| TCTCTCTGATGTGTTATGGG+AGG | - | chr3_1:71414099-71414118 | Msa0372700:intron | 45.0% | |
| TGTTCCAAGGCCTTGGTAAA+GGG | + | chr3_1:71414149-71414168 | None:intergenic | 45.0% | |
| TTGTTCCAAGGCCTTGGTAA+AGG | + | chr3_1:71414150-71414169 | None:intergenic | 45.0% | |
| TTGTTAATTGCTGCTGCTGC+TGG | - | chr3_1:71414280-71414299 | Msa0372700:intron | 45.0% | |
| TGTTAATTGCTGCTGCTGCT+GGG | - | chr3_1:71414281-71414300 | Msa0372700:intron | 45.0% | |
| GGATCACTTAAGCAAGGTCT+CGG | - | chr3_1:71414615-71414634 | Msa0372700:intron | 45.0% | |
| GATCACTTAAGCAAGGTCTC+GGG | - | chr3_1:71414616-71414635 | Msa0372700:intron | 45.0% | |
| TGGATGGGAAAGACGTTGTT+GGG | - | chr3_1:71414650-71414669 | Msa0372700:intron | 45.0% | |
| GAGGGGAAATGCCACTATAA+AGG | - | chr3_1:71414672-71414691 | Msa0372700:intron | 45.0% | |
| GGGAAATGCCACTATAAAGG+TGG | - | chr3_1:71414675-71414694 | Msa0372700:intron | 45.0% | |
| GCGAAATATTCACCTCCATC+AGG | + | chr3_1:71414713-71414732 | None:intergenic | 45.0% | |
| ACTTGTCTGCATCCTTGAAG+AGG | + | chr3_1:71415022-71415041 | None:intergenic | 45.0% | |
| ! | AGTCCCTTTGGAAAGGCTAA+AGG | - | chr3_1:71415039-71415058 | Msa0372700:intron | 45.0% |
| ! | GTCCCTTTGGAAAGGCTAAA+GGG | - | chr3_1:71415040-71415059 | Msa0372700:intron | 45.0% |
| ! | AGCCCTTTAGCCTTTCCAAA+GGG | + | chr3_1:71415045-71415064 | None:intergenic | 45.0% |
| ! | TAGCCCTTTAGCCTTTCCAA+AGG | + | chr3_1:71415046-71415065 | None:intergenic | 45.0% |
| CTACTGAGAACCCTTACAGA+AGG | - | chr3_1:71415063-71415082 | Msa0372700:intron | 45.0% | |
| ACTCCATGTGCCTTCTGTAA+GGG | + | chr3_1:71415076-71415095 | None:intergenic | 45.0% | |
| TACCTGAATTGCAGGGTTAG+AGG | + | chr3_1:71415136-71415155 | None:intergenic | 45.0% | |
| CTTGAGCTACCTGAATTGCA+GGG | + | chr3_1:71415143-71415162 | None:intergenic | 45.0% | |
| TCAGCTGAAAAACCGAGTAC+TGG | - | chr3_1:71415297-71415316 | Msa0372700:intron | 45.0% | |
| GTCCGCAGATCAAAACAAGT+TGG | + | chr3_1:71415461-71415480 | None:intergenic | 45.0% | |
| ACTGTGTCCAATGTTCTCTG+CGG | - | chr3_1:71415596-71415615 | Msa0372700:intron | 45.0% | |
| CCATATTCCGCAGAGAACAT+TGG | + | chr3_1:71415606-71415625 | None:intergenic | 45.0% | |
| CCAATGTTCTCTGCGGAATA+TGG | - | chr3_1:71415603-71415622 | Msa0372700:intron | 45.0% | |
| TCTCTGCGGAATATGGAAAC+AGG | - | chr3_1:71415610-71415629 | Msa0372700:intron | 45.0% | |
| TGCGGAATATGGAAACAGGA+GGG | - | chr3_1:71415614-71415633 | Msa0372700:intron | 45.0% | |
| ! | ATGGAAACAGGAGGGCATAT+TGG | - | chr3_1:71415622-71415641 | Msa0372700:intron | 45.0% |
| ! | TGGAAACAGGAGGGCATATT+GGG | - | chr3_1:71415623-71415642 | Msa0372700:intron | 45.0% |
| CCATTTCGTTAGAGCTGAGA+CGG | - | chr3_1:71415860-71415879 | Msa0372700:intron | 45.0% | |
| ! | CTGAGACGGAGTTCTTTTTC+TGG | - | chr3_1:71415874-71415893 | Msa0372700:intron | 45.0% |
| TGCGCATTTGCGTAGATTCT+TGG | + | chr3_1:71415948-71415967 | None:intergenic | 45.0% | |
| ATGCGCAATAGACCATAGCA+AGG | - | chr3_1:71415961-71415980 | Msa0372700:intron | 45.0% | |
| TGTGGAAGTCCTACATCAGA+AGG | - | chr3_1:71416090-71416109 | Msa0372700:CDS | 45.0% | |
| CAATGACACGAGTGTCAAGG+TGG | + | chr3_1:71412397-71412416 | None:intergenic | 50.0% | |
| ! | GAACGTGGATCTGGAATCCT+TGG | - | chr3_1:71412457-71412476 | Msa0372700:three_prime_UTR | 50.0% |
| TGATCCTATAGCTCCGGAAG+TGG | + | chr3_1:71412489-71412508 | None:intergenic | 50.0% | |
| TCAAGCTGAGGCACGTTCTA+AGG | - | chr3_1:71412559-71412578 | Msa0372700:three_prime_UTR | 50.0% | |
| CAAGCTGAGGCACGTTCTAA+GGG | - | chr3_1:71412560-71412579 | Msa0372700:three_prime_UTR | 50.0% | |
| ! | ATAGACCCCCCAATAGTGGA+CGG | - | chr3_1:71413150-71413169 | Msa0372700:intron | 50.0% |
| AATCCCACCGTCCACTATTG+GGG | + | chr3_1:71413160-71413179 | None:intergenic | 50.0% | |
| CAATCCCACCGTCCACTATT+GGG | + | chr3_1:71413161-71413180 | None:intergenic | 50.0% | |
| CGAAGGACAAACTAGTACCG+AGG | + | chr3_1:71413186-71413205 | None:intergenic | 50.0% | |
| TGTTCGACACCGGCACTTAT+TGG | - | chr3_1:71413308-71413327 | Msa0372700:CDS | 50.0% | |
| ATTGGAGAACCAGAGGTCCA+TGG | - | chr3_1:71413535-71413554 | Msa0372700:CDS | 50.0% | |
| ! | GAACCAGAGGTCCATGGTTT+TGG | - | chr3_1:71413541-71413560 | Msa0372700:CDS | 50.0% |
| GTGGAATGTGTCAATGCGTC+AGG | - | chr3_1:71413611-71413630 | Msa0372700:intron | 50.0% | |
| CTTTCCCTTTACCAAGGCCT+TGG | - | chr3_1:71414142-71414161 | Msa0372700:intron | 50.0% | |
| GTTAATTGCTGCTGCTGCTG+GGG | - | chr3_1:71414282-71414301 | Msa0372700:intron | 50.0% | |
| CTGAGTTGTGATGGCAGTGA+CGG | + | chr3_1:71414308-71414327 | None:intergenic | 50.0% | |
| CTACCTCACCTGAGTTGTGA+TGG | + | chr3_1:71414317-71414336 | None:intergenic | 50.0% | |
| TCTTTCCCATCCACAAGGCT+CGG | + | chr3_1:71414643-71414662 | None:intergenic | 50.0% | |
| CAACGTCTTTCCCATCCACA+AGG | + | chr3_1:71414648-71414667 | None:intergenic | 50.0% | |
| GTGGATGGGAAAGACGTTGT+TGG | - | chr3_1:71414649-71414668 | Msa0372700:intron | 50.0% | |
| ATGGGAAAGACGTTGTTGGG+AGG | - | chr3_1:71414653-71414672 | Msa0372700:intron | 50.0% | |
| TGGGAAAGACGTTGTTGGGA+GGG | - | chr3_1:71414654-71414673 | Msa0372700:intron | 50.0% | |
| CAAGCTGGCCACCTTTATAG+TGG | + | chr3_1:71414686-71414705 | None:intergenic | 50.0% | |
| CACTATAAAGGTGGCCAGCT+TGG | - | chr3_1:71414684-71414703 | Msa0372700:intron | 50.0% | |
| ! | ATTGATGACTGTGTAGCCCC+TGG | - | chr3_1:71414990-71415009 | Msa0372700:intron | 50.0% |
| CTTGAAGAGGCTGTATCCAG+GGG | + | chr3_1:71415009-71415028 | None:intergenic | 50.0% | |
| CCTTGAAGAGGCTGTATCCA+GGG | + | chr3_1:71415010-71415029 | None:intergenic | 50.0% | |
| TCCTTGAAGAGGCTGTATCC+AGG | + | chr3_1:71415011-71415030 | None:intergenic | 50.0% | |
| AGGATGCAGACAAGTCCCTT+TGG | - | chr3_1:71415027-71415046 | Msa0372700:intron | 50.0% | |
| ! | GCAGACAAGTCCCTTTGGAA+AGG | - | chr3_1:71415032-71415051 | Msa0372700:intron | 50.0% |
| ! | GAACCCTTACAGAAGGCACA+TGG | - | chr3_1:71415070-71415089 | Msa0372700:intron | 50.0% |
| CACTCCATGTGCCTTCTGTA+AGG | + | chr3_1:71415077-71415096 | None:intergenic | 50.0% | |
| AGGGTTAGAGGTGAGCATCA+AGG | + | chr3_1:71415124-71415143 | None:intergenic | 50.0% | |
| CACCTCTAACCCTGCAATTC+AGG | - | chr3_1:71415131-71415150 | Msa0372700:intron | 50.0% | |
| GCTTGAGCTACCTGAATTGC+AGG | + | chr3_1:71415144-71415163 | None:intergenic | 50.0% | |
| ATAAACGCAGACAGCGATGC+TGG | + | chr3_1:71415358-71415377 | None:intergenic | 50.0% | |
| AGCATCGCTGTCTGCGTTTA+TGG | - | chr3_1:71415357-71415376 | Msa0372700:intron | 50.0% | |
| CTGCGGAATATGGAAACAGG+AGG | - | chr3_1:71415613-71415632 | Msa0372700:intron | 50.0% | |
| ! | CCGTCTCAGCTCTAACGAAA+TGG | + | chr3_1:71415863-71415882 | None:intergenic | 50.0% |
| TGACACGAGTGTCAAGGTGG+TGG | + | chr3_1:71412394-71412413 | None:intergenic | 55.0% | |
| TCCTTGGCAGAAGCCACTTC+CGG | - | chr3_1:71412473-71412492 | Msa0372700:three_prime_UTR | 55.0% | |
| GAAGCCACTTCCGGAGCTAT+AGG | - | chr3_1:71412482-71412501 | Msa0372700:three_prime_UTR | 55.0% | |
| ATCCCACCGTCCACTATTGG+GGG | + | chr3_1:71413159-71413178 | None:intergenic | 55.0% | |
| CCAATCCCACCGTCCACTAT+TGG | + | chr3_1:71413162-71413181 | None:intergenic | 55.0% | |
| !! | CCAATAGTGGACGGTGGGAT+TGG | - | chr3_1:71413159-71413178 | Msa0372700:intron | 55.0% |
| TCGCCAAAACCATGGACCTC+TGG | + | chr3_1:71413547-71413566 | None:intergenic | 55.0% | |
| !!! | GAGGTCCATGGTTTTGGCGA+AGG | - | chr3_1:71413547-71413566 | Msa0372700:CDS | 55.0% |
| GTGATGTCAATCGAGGACCG+TGG | + | chr3_1:71414023-71414042 | None:intergenic | 55.0% | |
| CGTCACTGCCATCACAACTC+AGG | - | chr3_1:71414306-71414325 | Msa0372700:CDS | 55.0% | |
| CTGCCATCACAACTCAGGTG+AGG | - | chr3_1:71414311-71414330 | Msa0372700:CDS | 55.0% | |
| GGGAAAGACGTTGTTGGGAG+GGG | - | chr3_1:71414655-71414674 | Msa0372700:intron | 55.0% | |
| CCCTGGATACAGCCTCTTCA+AGG | - | chr3_1:71415007-71415026 | Msa0372700:intron | 55.0% | |
| TCCGGAAGTGGCTTCTGCCA+AGG | + | chr3_1:71412477-71412496 | None:intergenic | 60.0% | |
| !! | ACCCCCCAATAGTGGACGGT+GGG | - | chr3_1:71413154-71413173 | Msa0372700:intron | 60.0% |
| TCCCACCGTCCACTATTGGG+GGG | + | chr3_1:71413158-71413177 | None:intergenic | 60.0% | |
| !! | TGGACGGTGGGATTGGTCCT+CGG | - | chr3_1:71413166-71413185 | Msa0372700:intron | 60.0% |
| TGGGGACGTTTGTGTCGCAC+AGG | - | chr3_1:71413285-71413304 | Msa0372700:CDS | 60.0% | |
| GTCGCACAGGTGTTCGACAC+CGG | - | chr3_1:71413298-71413317 | Msa0372700:CDS | 60.0% | |
| TGGCCAGCTTGGTTCCCTGA+TGG | - | chr3_1:71414695-71414714 | Msa0372700:intron | 60.0% | |
| CCTCCATCAGGGAACCAAGC+TGG | + | chr3_1:71414701-71414720 | None:intergenic | 60.0% | |
| CCAGCTTGGTTCCCTGATGG+AGG | - | chr3_1:71414698-71414717 | Msa0372700:intron | 60.0% | |
| !! | GACCCCCCAATAGTGGACGG+TGG | - | chr3_1:71413153-71413172 | Msa0372700:intron | 65.0% |
| ! | TCGGGTCCGAGCCTTGTGGA+TGG | - | chr3_1:71414634-71414653 | Msa0372700:intron | 65.0% |
| ! | CGGGTCCGAGCCTTGTGGAT+GGG | - | chr3_1:71414635-71414654 | Msa0372700:intron | 65.0% |
| GGTCTCGGGTCCGAGCCTTG+TGG | - | chr3_1:71414630-71414649 | Msa0372700:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 71412390 | 71416220 | 71412390 | ID=Msa0372700;Name=Msa0372700 |
| chr3_1 | mRNA | 71412390 | 71416220 | 71412390 | ID=Msa0372700-mRNA-1;Parent=Msa0372700;Name=Msa0372700-mRNA-1;_AED=0.05;_eAED=0.05;_QI=65|0.75|0.8|1|1|1|5|418|277 |
| chr3_1 | exon | 71412390 | 71413084 | 71412390 | ID=Msa0372700-mRNA-1:exon:15731;Parent=Msa0372700-mRNA-1 |
| chr3_1 | exon | 71413170 | 71413327 | 71413170 | ID=Msa0372700-mRNA-1:exon:15730;Parent=Msa0372700-mRNA-1 |
| chr3_1 | exon | 71413458 | 71413604 | 71413458 | ID=Msa0372700-mRNA-1:exon:15729;Parent=Msa0372700-mRNA-1 |
| chr3_1 | exon | 71414283 | 71414391 | 71414283 | ID=Msa0372700-mRNA-1:exon:15728;Parent=Msa0372700-mRNA-1 |
| chr3_1 | exon | 71416013 | 71416220 | 71416013 | ID=Msa0372700-mRNA-1:exon:15727;Parent=Msa0372700-mRNA-1 |
| chr3_1 | five_prime_UTR | 71416156 | 71416220 | 71416156 | ID=Msa0372700-mRNA-1:five_prime_utr;Parent=Msa0372700-mRNA-1 |
| chr3_1 | CDS | 71416013 | 71416155 | 71416013 | ID=Msa0372700-mRNA-1:cds;Parent=Msa0372700-mRNA-1 |
| chr3_1 | CDS | 71414283 | 71414391 | 71414283 | ID=Msa0372700-mRNA-1:cds;Parent=Msa0372700-mRNA-1 |
| chr3_1 | CDS | 71413458 | 71413604 | 71413458 | ID=Msa0372700-mRNA-1:cds;Parent=Msa0372700-mRNA-1 |
| chr3_1 | CDS | 71413170 | 71413327 | 71413170 | ID=Msa0372700-mRNA-1:cds;Parent=Msa0372700-mRNA-1 |
| chr3_1 | CDS | 71412808 | 71413084 | 71412808 | ID=Msa0372700-mRNA-1:cds;Parent=Msa0372700-mRNA-1 |
| chr3_1 | three_prime_UTR | 71412390 | 71412807 | 71412390 | ID=Msa0372700-mRNA-1:three_prime_utr;Parent=Msa0372700-mRNA-1 |
| Gene Sequence |
| Protein sequence |
