AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1375980


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1375980 MtrunA17_Chr4g0077111 95.904 293 7 2 1 293 1 288 0.0 576
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1375980 AT2G43945.1 85.714 196 26 1 98 293 96 289 1.75e-122 352
Msa1375980 AT3G59870.1 79.070 215 40 2 84 293 74 288 4.92e-120 346

Find 112 sgRNAs with CRISPR-Local

Find 638 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTATATTACAGTGTCTTTA+TGG 0.129801 tig0019777:+45586 Msa1375980:intron
GAGAGGGATGGTTTGGGTTT+GGG 0.184276 tig0019777:-45459 None:intergenic
GAGGAGAAGGCATTGAAATT+AGG 0.197493 tig0019777:-45408 None:intergenic
GATGGTTTGGGTTTGGGTTT+GGG 0.199124 tig0019777:-45453 None:intergenic
GGATGGTTTGGGTTTGGGTT+TGG 0.214849 tig0019777:-45454 None:intergenic
AATATAACTGTAAGCAATTC+TGG 0.218417 tig0019777:-46941 None:intergenic
TGATTTGTTGCAGGAGTTAT+TGG 0.223382 tig0019777:+46623 Msa1375980:intron
CAATTTCAGGCTATGTAATA+TGG 0.235449 tig0019777:+54005 Msa1375980:intron
TGAGAGGGATGGTTTGGGTT+TGG 0.240709 tig0019777:-45460 None:intergenic
GAGGCTGTTTGCTTAAACTT+TGG 0.240953 tig0019777:-46967 None:intergenic
CTTTAACTCCAAACTTGTTT+GGG 0.246462 tig0019777:+45289 Msa1375980:CDS
AGGCTGTTTGCTTAAACTTT+GGG 0.252597 tig0019777:-46966 None:intergenic
ACTTTAACTCCAAACTTGTT+TGG 0.259552 tig0019777:+45288 Msa1375980:CDS
AGGAGAAGGCATTGAAATTA+GGG 0.276819 tig0019777:-45407 None:intergenic
CAAATAAGCCTGGACCATTC+TGG 0.279838 tig0019777:-45651 None:intergenic
TTATTATTCTTCTTTCAATA+AGG 0.280243 tig0019777:+45374 Msa1375980:CDS
TAGAGGTAGATGATCGTTAT+AGG 0.284823 tig0019777:-53153 None:intergenic
GGACCAATGCAGCTGTTATT+CGG 0.310151 tig0019777:+46897 Msa1375980:CDS
GACCAATGCAGCTGTTATTC+GGG 0.320394 tig0019777:+46898 Msa1375980:CDS
CCGTGTTGAGAGGGATGGTT+TGG 0.327532 tig0019777:-45466 None:intergenic
TTTATATATTCACACACATT+TGG 0.331883 tig0019777:+54460 Msa1375980:three_prime_UTR
AGGTAATTTAACCACATTCT+AGG 0.332108 tig0019777:+54291 Msa1375980:three_prime_UTR
CAAACTATGGTCGAAGGTTC+AGG 0.349293 tig0019777:+45721 Msa1375980:CDS
CTGTGCCTAATGTGGGGATT+GGG 0.355169 tig0019777:+54181 Msa1375980:three_prime_UTR
GAGGCATTTAGTAGGAGTAT+AGG 0.372516 tig0019777:+45149 Msa1375980:five_prime_UTR
ATATACACATCTGGAGCATC+TGG 0.382091 tig0019777:+46875 Msa1375980:CDS
TAAGAATCTCAATTAGTTCC+TGG 0.386071 tig0019777:-46710 None:intergenic
ACCATTCTGGAATTCGTAAT+CGG 0.393480 tig0019777:-45638 None:intergenic
CAACAAGGACCTAGAGCTAT+TGG 0.399054 tig0019777:+46654 Msa1375980:CDS
AGAGGTAGATGATCGTTATA+GGG 0.427240 tig0019777:-53152 None:intergenic
ACCATAGTTTGAACCTGGGT+TGG 0.428852 tig0019777:-45709 None:intergenic
TCCAACCCAGGTTCAAACTA+TGG 0.430883 tig0019777:+45708 Msa1375980:CDS
TCTTTGAAGTTTAGTTAGAA+AGG 0.440882 tig0019777:+54271 Msa1375980:three_prime_UTR
AAGGCATTGAAATTAGGGTT+TGG 0.442869 tig0019777:-45402 None:intergenic
AAGCAAAGCAGATGACTTGC+TGG 0.443673 tig0019777:-54044 None:intergenic
CAAACAGCCTCCAGAGAGTC+GGG 0.445251 tig0019777:+46979 Msa1375980:CDS
TCGAAGGTTCAGGTTCCATC+AGG 0.450277 tig0019777:+45731 Msa1375980:CDS
TCTGTGCCTAATGTGGGGAT+TGG 0.451536 tig0019777:+54180 Msa1375980:three_prime_UTR
CTTCGACCATAGTTTGAACC+TGG 0.455469 tig0019777:-45714 None:intergenic
CGTGTTGAGAGGGATGGTTT+GGG 0.459718 tig0019777:-45465 None:intergenic
AACCTGCTGGCTTCTAATAG+AGG 0.471307 tig0019777:-53170 None:intergenic
TCCTGATGTTGATTATCTAC+AGG 0.472012 tig0019777:+45774 Msa1375980:CDS
TTAACCACATTCTAGGAGAA+TGG 0.472667 tig0019777:+54298 Msa1375980:three_prime_UTR
TGCCTAATGTGGGGATTGGG+AGG 0.479567 tig0019777:+54184 Msa1375980:three_prime_UTR
AGCAGACAAGGAGGAGGAGA+AGG 0.481680 tig0019777:-45421 None:intergenic
ACCTGTAGATAATCAACATC+AGG 0.485806 tig0019777:-45775 None:intergenic
CATTATTTCTGTGCCTAATG+TGG 0.485895 tig0019777:+54173 Msa1375980:three_prime_UTR
TACGAATTCCAGAATGGTCC+AGG 0.489866 tig0019777:+45643 Msa1375980:CDS
GCCTACTAGTTGTTCTTCAT+CGG 0.495921 tig0019777:-45677 None:intergenic
GAAGAATAATAATGTGGATG+TGG 0.498732 tig0019777:-45363 None:intergenic
GAGGGGAAAATCGAGGAAGA+AGG 0.499709 tig0019777:+45249 Msa1375980:five_prime_UTR
ATTATTTCTGTGCCTAATGT+GGG 0.500738 tig0019777:+54174 Msa1375980:three_prime_UTR
GCTTTGCTTTCCATGACAGT+AGG 0.502426 tig0019777:+54058 Msa1375980:CDS
ATACTGTTCAAAAGTGTGCT+TGG 0.503618 tig0019777:-54427 None:intergenic
GAAAGGTAGAGGCATTTAGT+AGG 0.504966 tig0019777:+45141 None:intergenic
AGATAATCAACATCAGGAGC+AGG 0.506296 tig0019777:-45769 None:intergenic
CCATTCTGGAATTCGTAATC+GGG 0.512432 tig0019777:-45637 None:intergenic
CCATGACAGTAGGTTGCTCA+TGG 0.514082 tig0019777:+54068 Msa1375980:CDS
ATATGAAGATGAAGCGATGA+TGG 0.520857 tig0019777:-45331 None:intergenic
TACCTCTATTAGAAGCCAGC+AGG 0.523502 tig0019777:+53168 Msa1375980:CDS
TTTCTAACTAAACTTCAAAG+AGG 0.526054 tig0019777:-54269 None:intergenic
GGCTGTTTGCTTAAACTTTG+GGG 0.529115 tig0019777:-46965 None:intergenic
ACCCCGAATAACAGCTGCAT+TGG 0.530833 tig0019777:-46900 None:intergenic
GAGAGAAGCAGACAAGGAGG+AGG 0.533896 tig0019777:-45427 None:intergenic
TCATCGGAATCAAATAAGCC+TGG 0.538261 tig0019777:-45661 None:intergenic
AGATGAAGCGATGATGGTAT+TGG 0.547279 tig0019777:-45325 None:intergenic
ATTCTAGGAGAATGGTAGAA+TGG 0.550253 tig0019777:+54306 Msa1375980:three_prime_UTR
GTTGTCCGTGTTGAGAGGGA+TGG 0.554548 tig0019777:-45471 None:intergenic
ACCCTCCCAATCCCCACATT+AGG 0.555266 tig0019777:-54186 None:intergenic
TGAGATTCTTAGCTATGCCA+TGG 0.555470 tig0019777:+46722 Msa1375980:CDS
GGGCGAGAGAGAAGCAGACA+AGG 0.558012 tig0019777:-45433 None:intergenic
GAAGAAAGAAAGCAAAGCAG+AGG 0.558270 tig0019777:+45221 Msa1375980:five_prime_UTR
GCAAACAGCCTCCAGAGAGT+CGG 0.563421 tig0019777:+46978 Msa1375980:CDS
TACCGTTGTCCGTGTTGAGA+GGG 0.564509 tig0019777:-45475 None:intergenic
CCATGAGCAACCTACTGTCA+TGG 0.568451 tig0019777:-54068 None:intergenic
CCCGATTACGAATTCCAGAA+TGG 0.568870 tig0019777:+45637 Msa1375980:CDS
TTTAACTCCAAACTTGTTTG+GGG 0.571717 tig0019777:+45290 Msa1375980:CDS
TTCGACCATAGTTTGAACCT+GGG 0.575169 tig0019777:-45713 None:intergenic
AGCAAAGCAGAGGTGAGTGA+GGG 0.576158 tig0019777:+45231 Msa1375980:five_prime_UTR
TCCGATGAAGAACAACTAGT+AGG 0.577541 tig0019777:+45676 Msa1375980:CDS
AAGCAAAGCAGAGGTGAGTG+AGG 0.578434 tig0019777:+45230 Msa1375980:five_prime_UTR
TTGAAAGAAGAATAATAATG+TGG 0.585144 tig0019777:-45369 None:intergenic
GAGTCGGGAGCTGTTATCCA+AGG 0.589424 tig0019777:+46994 Msa1375980:CDS
GTTGTAGTCGGATACCCTGA+TGG 0.590913 tig0019777:-45746 None:intergenic
TTAACTCCAAACTTGTTTGG+GGG 0.593798 tig0019777:+45291 Msa1375980:CDS
CACAGAAATAATGTGTACAC+GGG 0.595753 tig0019777:-54163 None:intergenic
GTACCGTTGTCCGTGTTGAG+AGG 0.598096 tig0019777:-45476 None:intergenic
TCTACCATTCTCCTAGAATG+TGG 0.602698 tig0019777:-54302 None:intergenic
ATCCCTCTCAACACGGACAA+CGG 0.603072 tig0019777:+45473 Msa1375980:CDS
TTATTTCTGTGCCTAATGTG+GGG 0.604256 tig0019777:+54175 Msa1375980:three_prime_UTR
TGAAGCGATGATGGTATTGG+TGG 0.605081 tig0019777:-45322 None:intergenic
TATACACATCTGGAGCATCT+GGG 0.612826 tig0019777:+46876 Msa1375980:CDS
ATCAGGAGCAGGGTTGTAGT+CGG 0.614000 tig0019777:-45758 None:intergenic
GCCTAATGTGGGGATTGGGA+GGG 0.616534 tig0019777:+54185 Msa1375980:three_prime_UTR
GCAAAGCAGAGGTGAGTGAG+GGG 0.616762 tig0019777:+45232 Msa1375980:five_prime_UTR
CCAAACCATCCCTCTCAACA+CGG 0.623065 tig0019777:+45466 Msa1375980:CDS
GATAATCAACATCAGGAGCA+GGG 0.624264 tig0019777:-45768 None:intergenic
CGAAGGTTCAGGTTCCATCA+GGG 0.628724 tig0019777:+45732 Msa1375980:CDS
GTTTGGAGTTAAAGTAGCAG+TGG 0.628733 tig0019777:-45280 None:intergenic
AGGCACTCAAATTCCAACCC+AGG 0.632880 tig0019777:+45696 Msa1375980:CDS
CAGGTTCAAACTATGGTCGA+AGG 0.635069 tig0019777:+45715 Msa1375980:CDS
ATGCTCCAGATGTGTATATG+TGG 0.635785 tig0019777:-46871 None:intergenic
CGAGAGAGAAGCAGACAAGG+AGG 0.635916 tig0019777:-45430 None:intergenic
GCACAGAAATAATGTGTACA+CGG 0.638810 tig0019777:-54164 None:intergenic
AAACATGGGATTCATGCACC+AGG 0.638864 tig0019777:+46692 Msa1375980:CDS
AACAGCTCCCGACTCTCTGG+AGG 0.639143 tig0019777:-46986 None:intergenic
ATCTCTTACAGTTATAACCA+TGG 0.660140 tig0019777:-46739 None:intergenic
GGTGAGTGAGGGGAAAATCG+AGG 0.662615 tig0019777:+45242 Msa1375980:five_prime_UTR
ACCAATGCAGCTGTTATTCG+GGG 0.670991 tig0019777:+46899 Msa1375980:CDS
ACTCTCTTCTACCTTGACTG+AGG 0.712767 tig0019777:+54129 Msa1375980:CDS
TTATTGGCTATTCAACAACA+AGG 0.719917 tig0019777:+46639 Msa1375980:CDS
ACAGAAATAATGTGTACACG+GGG 0.771545 tig0019777:-54162 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTATTTAATTTTAACTTTG+TGG + tig0019777:47098-47117 Msa1375980:intron 10.0%
!! TTTAATGTTATAAATTTGAT+AGG + tig0019777:47763-47782 Msa1375980:intron 10.0%
!! AATTAAGAGTAATTAATATA+GGG + tig0019777:48353-48372 Msa1375980:intron 10.0%
!! ATTTCATTTACTTATTATTA+GGG - tig0019777:49858-49877 None:intergenic 10.0%
!! AATTTCATTTACTTATTATT+AGG - tig0019777:49859-49878 None:intergenic 10.0%
!!! TTAATATTTTCTATAATATC+CGG - tig0019777:51447-51466 None:intergenic 10.0%
!! TTATTATTCTTCTTTCAATA+AGG + tig0019777:45374-45393 Msa1375980:CDS 15.0%
!! GTAATATAACAAACAATAAT+AGG - tig0019777:45576-45595 None:intergenic 15.0%
!!! ATCATATCTTTTTGTAATTT+GGG + tig0019777:46075-46094 Msa1375980:intron 15.0%
!! TTTAAACTAGTATTAACAAA+AGG - tig0019777:46252-46271 None:intergenic 15.0%
!!! TAGTTTAAAATAGTAGAAAA+TGG + tig0019777:46263-46282 Msa1375980:intron 15.0%
!!! AGTTTAAAATAGTAGAAAAT+GGG + tig0019777:46264-46283 Msa1375980:intron 15.0%
!! CAAATATTCATTATCTATAA+TGG + tig0019777:46540-46559 Msa1375980:intron 15.0%
!!! GTTTTTATACAATATCATTA+AGG + tig0019777:47035-47054 Msa1375980:intron 15.0%
!! TTAAATGTACATTTATAACA+AGG - tig0019777:47410-47429 None:intergenic 15.0%
!! TATATAAAAGTAATTACTCT+TGG + tig0019777:47580-47599 Msa1375980:intron 15.0%
!! AAACATGTTTATGAAATTAT+TGG + tig0019777:47698-47717 Msa1375980:intron 15.0%
!! ATAACATTAAATAATTGCAT+TGG - tig0019777:47754-47773 None:intergenic 15.0%
!!! CATTTTTGTTTCTTATAAAA+AGG - tig0019777:48133-48152 None:intergenic 15.0%
!!! AACAAAAATGTCAATATTTT+TGG + tig0019777:48143-48162 Msa1375980:intron 15.0%
!! GAATTAAGAGTAATTAATAT+AGG + tig0019777:48352-48371 Msa1375980:intron 15.0%
!! ATTAAGAGTAATTAATATAG+GGG + tig0019777:48354-48373 Msa1375980:intron 15.0%
!! TAAGGAAAATTAATAATCAA+AGG - tig0019777:48598-48617 None:intergenic 15.0%
!! AAATAAAAACTATATTAGCA+AGG + tig0019777:49183-49202 Msa1375980:intron 15.0%
!! AATTAAAAAAGAAGAAGATT+TGG - tig0019777:49496-49515 None:intergenic 15.0%
!! TAACAATTCAATAATGATAT+CGG + tig0019777:49574-49593 Msa1375980:intron 15.0%
!! AATAAGATATGAGAATTTAA+AGG + tig0019777:50027-50046 Msa1375980:intron 15.0%
!! ATAAGATATGAGAATTTAAA+GGG + tig0019777:50028-50047 Msa1375980:intron 15.0%
!! TAAGAATATCAACAAAAAAT+TGG + tig0019777:50980-50999 Msa1375980:intron 15.0%
!! ATAATACTCTTCTTAAAATT+TGG + tig0019777:51530-51549 Msa1375980:intron 15.0%
!! TAATACTCTTCTTAAAATTT+GGG + tig0019777:51531-51550 Msa1375980:intron 15.0%
!!! AAAGTTATTTAAGATTTGTT+GGG - tig0019777:51732-51751 None:intergenic 15.0%
!!! TTTTAAATCTTTTTTTAGTC+TGG + tig0019777:52223-52242 Msa1375980:intron 15.0%
!! TAAAAAAATCTATATCTACT+AGG - tig0019777:52258-52277 None:intergenic 15.0%
!! TAAATAAATAGACATGAAAT+GGG - tig0019777:52304-52323 None:intergenic 15.0%
!! ATTTATTAAATTACGAATTG+AGG - tig0019777:53599-53618 None:intergenic 15.0%
!!! TTATTTATTTGAGGTAAAAT+TGG + tig0019777:53625-53644 Msa1375980:intron 15.0%
!!! ATACAAATTTTTTCATACTT+GGG - tig0019777:53689-53708 None:intergenic 15.0%
!! ATATATAAGTAACTAACAAA+CGG - tig0019777:53817-53836 None:intergenic 15.0%
!! TTAGTTACTTATATATTGTT+TGG + tig0019777:53821-53840 Msa1375980:intron 15.0%
!! TTGAAAGAAGAATAATAATG+TGG - tig0019777:45372-45391 None:intergenic 20.0%
!! TAACAAACAATAATAGGATT+GGG - tig0019777:45570-45589 None:intergenic 20.0%
!! ATAACAAACAATAATAGGAT+TGG - tig0019777:45571-45590 None:intergenic 20.0%
!!! TACAAAAAGTATTTTTGCAT+CGG - tig0019777:45985-46004 None:intergenic 20.0%
!! AAAAAGATATGATGAATACA+AGG - tig0019777:46068-46087 None:intergenic 20.0%
!!! CATCATATCTTTTTGTAATT+TGG + tig0019777:46074-46093 Msa1375980:intron 20.0%
!! AAAAATCCGTCATAAAAATA+TGG - tig0019777:46441-46460 None:intergenic 20.0%
!!! ATATTTTTATGACGGATTTT+TGG + tig0019777:46440-46459 Msa1375980:intron 20.0%
!!! TAATTAAATTGATTTGTTGC+AGG + tig0019777:46614-46633 Msa1375980:intron 20.0%
!!! TCTCGTAATATATTTTACAT+AGG + tig0019777:47075-47094 Msa1375980:intron 20.0%
!!! TTTAATTTTAACTTTGTGGT+AGG + tig0019777:47102-47121 Msa1375980:intron 20.0%
!! AAGAATAAAATATCACAAAC+AGG - tig0019777:47160-47179 None:intergenic 20.0%
!! TGGCTATATATATCATTATT+TGG - tig0019777:47380-47399 None:intergenic 20.0%
!!! ATTTATAACAAGGAGAATTT+TGG - tig0019777:47400-47419 None:intergenic 20.0%
!! AACTAAAAATACACTTTCTT+TGG - tig0019777:47868-47887 None:intergenic 20.0%
!! TTAAAGATAAGACAAAACTT+AGG - tig0019777:47924-47943 None:intergenic 20.0%
!!! ATTTAGCTTCTTTTTTTTTG+TGG - tig0019777:48280-48299 None:intergenic 20.0%
!! TTCTCTCTCATAATAATTAA+GGG - tig0019777:48313-48332 None:intergenic 20.0%
!! ATTCTCTCTCATAATAATTA+AGG - tig0019777:48314-48333 None:intergenic 20.0%
!!! ATGTATTTTGCTTCTTATAT+TGG + tig0019777:48459-48478 Msa1375980:intron 20.0%
!!! TGTATTTTGCTTCTTATATT+GGG + tig0019777:48460-48479 Msa1375980:intron 20.0%
!! ATGTACAAATATATACGAAA+GGG - tig0019777:48633-48652 None:intergenic 20.0%
!! TACTTATGAAGTTAATACTT+GGG - tig0019777:48945-48964 None:intergenic 20.0%
!! TTACTTATGAAGTTAATACT+TGG - tig0019777:48946-48965 None:intergenic 20.0%
!!! TTTTATAACAATAGTGCAAT+TGG + tig0019777:49297-49316 Msa1375980:intron 20.0%
!!! AATTGGTAGTATTTAATTTC+AGG + tig0019777:49314-49333 Msa1375980:intron 20.0%
!! AAGATACAATTAATTGTAGA+AGG - tig0019777:49420-49439 None:intergenic 20.0%
!! AACAATTCAATAATGATATC+GGG + tig0019777:49575-49594 Msa1375980:intron 20.0%
!! AGATTCTTATGAGAATTTAA+AGG + tig0019777:49996-50015 Msa1375980:intron 20.0%
!! GATTCTTATGAGAATTTAAA+GGG + tig0019777:49997-50016 Msa1375980:intron 20.0%
!! ATTCTTATGAGAATTTAAAG+GGG + tig0019777:49998-50017 Msa1375980:intron 20.0%
!! TAAGATATGAGAATTTAAAG+GGG + tig0019777:50029-50048 Msa1375980:intron 20.0%
!! TTATTGAGAAAGATTAATAG+CGG + tig0019777:50542-50561 Msa1375980:intron 20.0%
!!! TTATAAAAGGAACTCTAAAA+TGG + tig0019777:50734-50753 Msa1375980:intron 20.0%
!! TATGATCATGTGAAAAAAAT+TGG + tig0019777:51125-51144 Msa1375980:intron 20.0%
!!! ATATTAGTTTTCATACAAAC+CGG + tig0019777:51276-51295 Msa1375980:intron 20.0%
!! TTTCTTTCAAAGTTTATTTC+CGG - tig0019777:51298-51317 None:intergenic 20.0%
!!! CAAAGTTATTTAAGATTTGT+TGG - tig0019777:51733-51752 None:intergenic 20.0%
!! TTTGATACGTCTTAAAATTT+GGG + tig0019777:51749-51768 Msa1375980:intron 20.0%
!! AAATAAATAGACATGAAATG+GGG - tig0019777:52303-52322 None:intergenic 20.0%
!! GTAAATAAATAGACATGAAA+TGG - tig0019777:52305-52324 None:intergenic 20.0%
!!! CTTTTTTTTTTTTTGACAAG+AGG - tig0019777:52327-52346 None:intergenic 20.0%
!!! TATTTGTTTACCTTTTTATC+TGG + tig0019777:52349-52368 Msa1375980:intron 20.0%
!! AATGCATGCTATAAAAATTT+AGG + tig0019777:52399-52418 Msa1375980:intron 20.0%
!!! GTTATTTTTCTCCATATTTA+GGG - tig0019777:52996-53015 None:intergenic 20.0%
!! TTATAAATTCGACCATAATA+CGG - tig0019777:53072-53091 None:intergenic 20.0%
!! AAAGAAATTAAACTGAAAGA+AGG + tig0019777:53404-53423 Msa1375980:intron 20.0%
!! AAGAAATTAAACTGAAAGAA+GGG + tig0019777:53405-53424 Msa1375980:intron 20.0%
!!! AATGCATTGTTATTTATTTG+AGG + tig0019777:53616-53635 Msa1375980:intron 20.0%
!!! CATACAAATTTTTTCATACT+TGG - tig0019777:53690-53709 None:intergenic 20.0%
!! TTAAAACATCACATAAGAAA+TGG + tig0019777:53710-53729 Msa1375980:intron 20.0%
!! TAAAACATCACATAAGAAAT+GGG + tig0019777:53711-53730 Msa1375980:intron 20.0%
!! TTTATATATTCACACACATT+TGG + tig0019777:54460-54479 Msa1375980:three_prime_UTR 20.0%
! GTTATATTACAGTGTCTTTA+TGG + tig0019777:45586-45605 Msa1375980:intron 25.0%
! TTTAAACCATATAAGTATGC+AGG - tig0019777:45935-45954 None:intergenic 25.0%
! TTGTAACCTAATTTATGCAT+TGG + tig0019777:46000-46019 Msa1375980:intron 25.0%
! TGTAACCTAATTTATGCATT+GGG + tig0019777:46001-46020 Msa1375980:intron 25.0%
! AAATTCCCAATGCATAAATT+AGG - tig0019777:46009-46028 None:intergenic 25.0%
! TGATAAAGAAAATGAGCAAA+AGG - tig0019777:46033-46052 None:intergenic 25.0%
!!! ACTTTTGTTTCATATTCGAT+CGG + tig0019777:46102-46121 Msa1375980:intron 25.0%
!!! GTTTTTAGTCAATACTAAGT+GGG + tig0019777:46286-46305 Msa1375980:intron 25.0%
! TAACTTACTCCTTAATGTTT+AGG + tig0019777:46319-46338 Msa1375980:intron 25.0%
!!! CATTGACCATATTTTTATGA+CGG + tig0019777:46432-46451 Msa1375980:intron 25.0%
!! TATTTGATGATTGTGTGAAA+AGG - tig0019777:46526-46545 None:intergenic 25.0%
! AATATAACTGTAAGCAATTC+TGG - tig0019777:46944-46963 None:intergenic 25.0%
! TTCAAATGTAAACTTTACCT+TGG - tig0019777:47014-47033 None:intergenic 25.0%
! TCTATATGTATTATAACGAC+TGG + tig0019777:47216-47235 Msa1375980:intron 25.0%
! CTATATGTATTATAACGACT+GGG + tig0019777:47217-47236 Msa1375980:intron 25.0%
!!! TGATAAAGTTTTATTCTACC+CGG + tig0019777:47294-47313 Msa1375980:intron 25.0%
! AATTTGATAGGTACCAAATA+TGG + tig0019777:47775-47794 Msa1375980:intron 25.0%
! AATGCACATCCTTAAATATA+GGG - tig0019777:47801-47820 None:intergenic 25.0%
! AAATGCACATCCTTAAATAT+AGG - tig0019777:47802-47821 None:intergenic 25.0%
! TCTTATCTTTAATGCTCTTA+GGG + tig0019777:47932-47951 Msa1375980:intron 25.0%
!!! AACTTATCATTTGATGATGT+TGG + tig0019777:48017-48036 Msa1375980:intron 25.0%
!!! ACTTATCATTTGATGATGTT+GGG + tig0019777:48018-48037 Msa1375980:intron 25.0%
! TGTTTCTTATAAAAAGGACT+GGG - tig0019777:48127-48146 None:intergenic 25.0%
!! TTGTTTCTTATAAAAAGGAC+TGG - tig0019777:48128-48147 None:intergenic 25.0%
! CTTGTAATACAATTGAAAAC+TGG - tig0019777:48191-48210 None:intergenic 25.0%
! ACAATGCATAATATATGCAA+AGG + tig0019777:48232-48251 Msa1375980:intron 25.0%
! TGTACAAATATATACGAAAG+GGG - tig0019777:48632-48651 None:intergenic 25.0%
! GATGTACAAATATATACGAA+AGG - tig0019777:48634-48653 None:intergenic 25.0%
! GGATCTTACAAATTGTATTA+CGG - tig0019777:48756-48775 None:intergenic 25.0%
! AGACTAAGTTCATAATAAGT+AGG + tig0019777:48972-48991 Msa1375980:intron 25.0%
! GACTAAGTTCATAATAAGTA+GGG + tig0019777:48973-48992 Msa1375980:intron 25.0%
!!! TTCTTAGTTGATAATGCATT+AGG + tig0019777:49260-49279 Msa1375980:intron 25.0%
! TGCACTATTGTTATAAAACA+AGG - tig0019777:49295-49314 None:intergenic 25.0%
! ACAATTCAATAATGATATCG+GGG + tig0019777:49576-49595 Msa1375980:intron 25.0%
! TGTATATATATATAACGAGC+TGG + tig0019777:49663-49682 Msa1375980:intron 25.0%
!! CTTAATTTTCAACTCAAGTT+CGG + tig0019777:49746-49765 Msa1375980:intron 25.0%
! AGTAAATGAAATTACACAGA+AGG + tig0019777:49866-49885 Msa1375980:intron 25.0%
! GTAAATGAAATTACACAGAA+GGG + tig0019777:49867-49886 Msa1375980:intron 25.0%
! TAAATGAAATTACACAGAAG+GGG + tig0019777:49868-49887 Msa1375980:intron 25.0%
!! ACACATGTAAAAGATTGTTT+TGG + tig0019777:49935-49954 Msa1375980:intron 25.0%
!!! CAAGTTTTTTCCAATAACAA+TGG - tig0019777:50241-50260 None:intergenic 25.0%
!! TTGTTATTGGAAAAAACTTG+AGG + tig0019777:50241-50260 Msa1375980:intron 25.0%
! TATTGAGAAAGATTAATAGC+GGG + tig0019777:50543-50562 Msa1375980:intron 25.0%
! AAAACTATGCAATAACACTT+TGG - tig0019777:50769-50788 None:intergenic 25.0%
! AAAAAAACCTATTCAACCAT+TGG + tig0019777:51067-51086 Msa1375980:intron 25.0%
! ATCATGTGAAAAAAATTGGT+TGG + tig0019777:51129-51148 Msa1375980:intron 25.0%
! TCATGTGAAAAAAATTGGTT+GGG + tig0019777:51130-51149 Msa1375980:intron 25.0%
! GGTTTGTATGAAAACTAATA+TGG - tig0019777:51277-51296 None:intergenic 25.0%
!! ACTCCATTTTCATAAATCTA+GGG - tig0019777:51479-51498 None:intergenic 25.0%
! CCTAAAATTGTGTTTATAAG+TGG - tig0019777:51609-51628 None:intergenic 25.0%
!! CCACTTATAAACACAATTTT+AGG + tig0019777:51606-51625 Msa1375980:intron 25.0%
! CTTTGATACGTCTTAAAATT+TGG + tig0019777:51748-51767 Msa1375980:intron 25.0%
!! ACAAATTGGAGTATTATGTA+GGG - tig0019777:52091-52110 None:intergenic 25.0%
! CTGAGTTCTTATATCAAAAT+TGG - tig0019777:52181-52200 None:intergenic 25.0%
! CGATACAATATATACAAACT+AGG - tig0019777:52443-52462 None:intergenic 25.0%
!! AAAAGAGATAAATCCAGTTT+TGG - tig0019777:52474-52493 None:intergenic 25.0%
! TAAAGAAAAGGGAACATTAA+GGG - tig0019777:52888-52907 None:intergenic 25.0%
! TTAAAGAAAAGGGAACATTA+AGG - tig0019777:52889-52908 None:intergenic 25.0%
! TAAGAACTTCAATCAGAATA+TGG - tig0019777:52969-52988 None:intergenic 25.0%
!!! GGTTATTTTTCTCCATATTT+AGG - tig0019777:52997-53016 None:intergenic 25.0%
! TATAAATTCGACCATAATAC+GGG - tig0019777:53071-53090 None:intergenic 25.0%
! AAATAAAAGACAGCAAGAAA+AGG - tig0019777:53207-53226 None:intergenic 25.0%
!!! TTTCTTGCTGTCTTTTATTT+TGG + tig0019777:53207-53226 Msa1375980:intron 25.0%
! ACTTAATTGTTTCATATCAG+TGG + tig0019777:53483-53502 Msa1375980:intron 25.0%
! AAAACATCACATAAGAAATG+GGG + tig0019777:53712-53731 Msa1375980:intron 25.0%
! ATACCAATTTAGAGAATCAA+TGG + tig0019777:53755-53774 Msa1375980:intron 25.0%
! TCGTTTAGTCTAATGTAAAT+TGG + tig0019777:53859-53878 Msa1375980:intron 25.0%
! GTAAATTGGATAAATAAGCT+CGG + tig0019777:53873-53892 Msa1375980:intron 25.0%
! CAAAAAACTAAAATACAAGC+TGG - tig0019777:53924-53943 None:intergenic 25.0%
! TTTCTAACTAAACTTCAAAG+AGG - tig0019777:54272-54291 None:intergenic 25.0%
!!! TCTTTGAAGTTTAGTTAGAA+AGG + tig0019777:54271-54290 Msa1375980:three_prime_UTR 25.0%
!!! TAGACTTCATTTTAAAACGT+AGG + tig0019777:54332-54351 Msa1375980:three_prime_UTR 25.0%
!! ACTACTGAAAACTCTATTTT+TGG + tig0019777:54374-54393 Msa1375980:three_prime_UTR 25.0%
! ACTTTAACTCCAAACTTGTT+TGG + tig0019777:45288-45307 Msa1375980:CDS 30.0%
! CTTTAACTCCAAACTTGTTT+GGG + tig0019777:45289-45308 Msa1375980:CDS 30.0%
! TTTAACTCCAAACTTGTTTG+GGG + tig0019777:45290-45309 Msa1375980:CDS 30.0%
GAAGAATAATAATGTGGATG+TGG - tig0019777:45366-45385 None:intergenic 30.0%
! AAAAAAAGAGTATGAGAGAG+AGG - tig0019777:45501-45520 None:intergenic 30.0%
TGTTCTTCACATATTCTGTT+TGG + tig0019777:45891-45910 Msa1375980:intron 30.0%
TTCACATATTCTGTTTGGTA+GGG + tig0019777:45896-45915 Msa1375980:intron 30.0%
TTTACACCTGCATACTTATA+TGG + tig0019777:45926-45945 Msa1375980:intron 30.0%
! TTTTGCATCGGAATATTTTG+CGG - tig0019777:45973-45992 None:intergenic 30.0%
AAGATATGATGAATACAAGG+AGG - tig0019777:46065-46084 None:intergenic 30.0%
!!! GGTTTTTAGTCAATACTAAG+TGG + tig0019777:46285-46304 Msa1375980:intron 30.0%
TTACTCCTTAATGTTTAGGT+AGG + tig0019777:46323-46342 Msa1375980:intron 30.0%
TTACTCCTACCTAAACATTA+AGG - tig0019777:46331-46350 None:intergenic 30.0%
TTTAGGTAGGAGTAAGTTAT+CGG + tig0019777:46336-46355 Msa1375980:intron 30.0%
CGTCATAAAAATATGGTCAA+TGG - tig0019777:46434-46453 None:intergenic 30.0%
! TTATTGGCTATTCAACAACA+AGG + tig0019777:46639-46658 Msa1375980:CDS 30.0%
!!! TTTTTTGGAACACGAAACAT+GGG + tig0019777:46678-46697 Msa1375980:CDS 30.0%
TAAGAATCTCAATTAGTTCC+TGG - tig0019777:46713-46732 None:intergenic 30.0%
ATCTCTTACAGTTATAACCA+TGG - tig0019777:46742-46761 None:intergenic 30.0%
AACAAAAATCAGAGCTTGTA+CGG - tig0019777:46793-46812 None:intergenic 30.0%
AGTTGTGAAACATAGTCATA+GGG - tig0019777:46822-46841 None:intergenic 30.0%
AAGTTGTGAAACATAGTCAT+AGG - tig0019777:46823-46842 None:intergenic 30.0%
ATGACTATGTTTCACAACTT+AGG + tig0019777:46823-46842 Msa1375980:intron 30.0%
AAAAACCACATATACACATC+TGG + tig0019777:46866-46885 Msa1375980:CDS 30.0%
TATTATAACGACTGGGATAA+AGG + tig0019777:47224-47243 Msa1375980:intron 30.0%
CTTAAATATAGGGCCATATT+TGG - tig0019777:47791-47810 None:intergenic 30.0%
CAAATATGGCCCTATATTTA+AGG + tig0019777:47789-47808 Msa1375980:intron 30.0%
AAACTTAGGTACATTTCCTT+AGG - tig0019777:47910-47929 None:intergenic 30.0%
GTCTTATCTTTAATGCTCTT+AGG + tig0019777:47931-47950 Msa1375980:intron 30.0%
TTTAATGCTCTTAGGGAATA+GGG + tig0019777:47939-47958 Msa1375980:intron 30.0%
! TCTAGTTAAATTTTGTTCCG+TGG - tig0019777:47986-48005 None:intergenic 30.0%
AACAATTAGGACTCATTTGA+TGG - tig0019777:48073-48092 None:intergenic 30.0%
CTTCATCTTGGAAAACAATT+AGG - tig0019777:48086-48105 None:intergenic 30.0%
AAGAATGACAATCTTCATCT+TGG - tig0019777:48098-48117 None:intergenic 30.0%
GTTTCTTATAAAAAGGACTG+GGG - tig0019777:48126-48145 None:intergenic 30.0%
GGTCAATGTTTCTTACAAAA+AGG - tig0019777:48170-48189 None:intergenic 30.0%
!!! TTCTTTTTTTTTGTGGTGGT+CGG - tig0019777:48273-48292 None:intergenic 30.0%
!!! TAGCTTCTTTTTTTTTGTGG+TGG - tig0019777:48277-48296 None:intergenic 30.0%
GAATACTAAAAGCAAGTTTG+TGG + tig0019777:48330-48349 Msa1375980:intron 30.0%
!!! CTATTTTTAACGTGTTTCCT+TGG + tig0019777:48424-48443 Msa1375980:intron 30.0%
TACATAAATCATCAAGACCA+AGG - tig0019777:48444-48463 None:intergenic 30.0%
AATTTGTAAGATCCTACCTA+AGG + tig0019777:48762-48781 Msa1375980:intron 30.0%
ATTTGTAAGATCCTACCTAA+GGG + tig0019777:48763-48782 Msa1375980:intron 30.0%
! ATAAGTGCAATTTTACCCTT+AGG - tig0019777:48781-48800 None:intergenic 30.0%
!! AGTTTGATGATGAGATTTAG+AGG - tig0019777:48876-48895 None:intergenic 30.0%
CGACTCGATAAAATTTAGTT+CGG + tig0019777:49039-49058 Msa1375980:intron 30.0%
! TATTTAATTTCAGGCGATGT+GGG + tig0019777:49323-49342 Msa1375980:intron 30.0%
GTAAAAGAAACAGTAGAATG+AGG - tig0019777:49387-49406 None:intergenic 30.0%
TGTATATGTACCATCATAGA+AGG - tig0019777:49543-49562 None:intergenic 30.0%
TTAAGTGTGAGATTTCTAAG+TGG + tig0019777:49606-49625 Msa1375980:intron 30.0%
! TATATATAGTTCGACTCGTT+TGG - tig0019777:49697-49716 None:intergenic 30.0%
GGTAATTAATTCGTTGAACT+TGG - tig0019777:49789-49808 None:intergenic 30.0%
CATTTACTTATTATTAGGGC+TGG - tig0019777:49854-49873 None:intergenic 30.0%
! GGACTGTGTTATATTTGTTA+TGG + tig0019777:49895-49914 Msa1375980:intron 30.0%
TTATGAGAATTTAAAGGGGA+AGG + tig0019777:50002-50021 Msa1375980:intron 30.0%
ATATGAGAATTTAAAGGGGA+AGG + tig0019777:50033-50052 Msa1375980:intron 30.0%
AACTCACAAACTCTCAAAAT+TGG - tig0019777:50175-50194 None:intergenic 30.0%
ATTGAGAAAGATTAATAGCG+GGG + tig0019777:50544-50563 Msa1375980:intron 30.0%
ATTCTTGTAGTAGACGTTTA+AGG + tig0019777:50682-50701 Msa1375980:intron 30.0%
AATCATCTCTGAGTTCTTAT+GGG + tig0019777:50839-50858 Msa1375980:intron 30.0%
!!! GCTATTTTGACTAGTGTAAT+TGG - tig0019777:50874-50893 None:intergenic 30.0%
!!! TTTTTGTTTTCACCACTATG+AGG - tig0019777:51011-51030 None:intergenic 30.0%
CATGTGAAAAAAATTGGTTG+GGG + tig0019777:51131-51150 Msa1375980:intron 30.0%
ATGTGAAAAAAATTGGTTGG+GGG + tig0019777:51132-51151 Msa1375980:intron 30.0%
! ACAGAAGTTGCAGAAATTTT+AGG + tig0019777:51166-51185 Msa1375980:intron 30.0%
TAGGTGTTTCTTAATTCAAG+AGG + tig0019777:51185-51204 Msa1375980:intron 30.0%
TTTCTTAATTCAAGAGGCAA+TGG + tig0019777:51191-51210 Msa1375980:intron 30.0%
TTACACATAATCAATCAACG+AGG + tig0019777:51347-51366 Msa1375980:intron 30.0%
TTACTATAGTTACAACCAAC+TGG + tig0019777:51397-51416 Msa1375980:intron 30.0%
AGAAGTTGTAAAGTAGTTTC+CGG + tig0019777:51425-51444 Msa1375980:intron 30.0%
AGACCCTAGATTTATGAAAA+TGG + tig0019777:51473-51492 Msa1375980:intron 30.0%
! CACTCCATTTTCATAAATCT+AGG - tig0019777:51480-51499 None:intergenic 30.0%
!!! TTAACTATCATTTTAGCTCC+AGG - tig0019777:51509-51528 None:intergenic 30.0%
ACTCTTCTTAAAATTTGGGT+TGG + tig0019777:51535-51554 Msa1375980:intron 30.0%
! CTCTTCTTAAAATTTGGGTT+GGG + tig0019777:51536-51555 Msa1375980:intron 30.0%
TACTCATATTTCATCCAATG+TGG + tig0019777:51632-51651 Msa1375980:intron 30.0%
ACTCATATTTCATCCAATGT+GGG + tig0019777:51633-51652 Msa1375980:intron 30.0%
ATACGTCTTAAAATTTGGGT+TGG + tig0019777:51753-51772 Msa1375980:intron 30.0%
! TACGTCTTAAAATTTGGGTT+GGG + tig0019777:51754-51773 Msa1375980:intron 30.0%
!!! TGTTTTAGCTCAAGAACAAT+GGG - tig0019777:52007-52026 None:intergenic 30.0%
!!! ATGTTTTAGCTCAAGAACAA+TGG - tig0019777:52008-52027 None:intergenic 30.0%
! GACAAATTGGAGTATTATGT+AGG - tig0019777:52092-52111 None:intergenic 30.0%
!!! AGATTTTTTTACAAACCACC+TGG + tig0019777:52267-52286 Msa1375980:intron 30.0%
! GGATTTATCTCTTTTTGCAT+TGG + tig0019777:52479-52498 Msa1375980:intron 30.0%
AGCATGTTTGTTTGTGATTA+TGG + tig0019777:52715-52734 Msa1375980:intron 30.0%
GCATGTTTGTTTGTGATTAT+GGG + tig0019777:52716-52735 Msa1375980:intron 30.0%
TTGCATGTAGAGTATATTCA+GGG - tig0019777:52860-52879 None:intergenic 30.0%
TTTGCATGTAGAGTATATTC+AGG - tig0019777:52861-52880 None:intergenic 30.0%
! ATGTTCCCTTTTCTTTAAGT+AGG + tig0019777:52891-52910 Msa1375980:intron 30.0%
! TGTTCCCTTTTCTTTAAGTA+GGG + tig0019777:52892-52911 Msa1375980:intron 30.0%
TGGATAAAGAACACTTCTTA+AGG + tig0019777:53024-53043 Msa1375980:intron 30.0%
GGATAAAGAACACTTCTTAA+GGG + tig0019777:53025-53044 Msa1375980:intron 30.0%
ATAAATTCGACCATAATACG+GGG - tig0019777:53070-53089 None:intergenic 30.0%
TGCACATTCAACAAAATCAT+TGG - tig0019777:53110-53129 None:intergenic 30.0%
! AATGATTTTGTTGAATGTGC+AGG + tig0019777:53109-53128 Msa1375980:intron 30.0%
TGGAGTGATTATAATTTCAC+AGG + tig0019777:53227-53246 Msa1375980:intron 30.0%
!! TGTGCATTTAGCTTTATTCA+TGG + tig0019777:53378-53397 Msa1375980:intron 30.0%
CATATGTAAGATCATATGTG+TGG + tig0019777:53449-53468 Msa1375980:intron 30.0%
!!! GCATTTAACACTTTTTCTCA+TGG + tig0019777:53517-53536 Msa1375980:intron 30.0%
! TTTCATACTTGGGAAGTTTT+AGG - tig0019777:53679-53698 None:intergenic 30.0%
AAACATCACATAAGAAATGG+GGG + tig0019777:53713-53732 Msa1375980:intron 30.0%
!! ATGCCATTGATTCTCTAAAT+TGG - tig0019777:53761-53780 None:intergenic 30.0%
ATAGCCTGAAATTGAAACAA+CGG - tig0019777:53999-54018 None:intergenic 30.0%
CAATTTCAGGCTATGTAATA+TGG + tig0019777:54005-54024 Msa1375980:intron 30.0%
GTCAAGAAGCAAAAAATTTG+CGG + tig0019777:54097-54116 Msa1375980:CDS 30.0%
!! ATTATTTCTGTGCCTAATGT+GGG + tig0019777:54174-54193 Msa1375980:three_prime_UTR 30.0%
AGGTAATTTAACCACATTCT+AGG + tig0019777:54291-54310 Msa1375980:three_prime_UTR 30.0%
! AGAGTTTTCAGTAGTTATGT+AGG - tig0019777:54369-54388 None:intergenic 30.0%
! TTAACTCCAAACTTGTTTGG+GGG + tig0019777:45291-45310 Msa1375980:CDS 35.0%
ATATGAAGATGAAGCGATGA+TGG - tig0019777:45334-45353 None:intergenic 35.0%
!! AAGGCATTGAAATTAGGGTT+TGG - tig0019777:45405-45424 None:intergenic 35.0%
!! AGGAGAAGGCATTGAAATTA+GGG - tig0019777:45410-45429 None:intergenic 35.0%
!! ACCATTCTGGAATTCGTAAT+CGG - tig0019777:45641-45660 None:intergenic 35.0%
! TCCTGATGTTGATTATCTAC+AGG + tig0019777:45774-45793 Msa1375980:CDS 35.0%
ACCTGTAGATAATCAACATC+AGG - tig0019777:45778-45797 None:intergenic 35.0%
ATAATATCACAAGTGAACGC+TGG - tig0019777:45841-45860 None:intergenic 35.0%
CTTCACATATTCTGTTTGGT+AGG + tig0019777:45895-45914 Msa1375980:intron 35.0%
TCACATATTCTGTTTGGTAG+GGG + tig0019777:45897-45916 Msa1375980:intron 35.0%
TGAATACAAGGAGGATACAA+GGG - tig0019777:46056-46075 None:intergenic 35.0%
ATGAATACAAGGAGGATACA+AGG - tig0019777:46057-46076 None:intergenic 35.0%
AGTCAATACTAAGTGGGTAT+AGG + tig0019777:46292-46311 Msa1375980:intron 35.0%
AAACACACACACACACAATA+TGG - tig0019777:46365-46384 None:intergenic 35.0%
!! TAGGTGTGTGTTTGTTATTG+TGG + tig0019777:46386-46405 Msa1375980:intron 35.0%
! AAATATGGTCAATGGTGATG+TGG - tig0019777:46426-46445 None:intergenic 35.0%
!! TGATTTGTTGCAGGAGTTAT+TGG + tig0019777:46623-46642 Msa1375980:intron 35.0%
!!! CTTTTTTGGAACACGAAACA+TGG + tig0019777:46677-46696 Msa1375980:CDS 35.0%
AGGCTGTTTGCTTAAACTTT+GGG - tig0019777:46969-46988 None:intergenic 35.0%
TCACAAACAGGAAGAGAAAA+AGG - tig0019777:47148-47167 None:intergenic 35.0%
TTTCCTTAGTGCTTATCGTA+TGG + tig0019777:47819-47838 Msa1375980:intron 35.0%
!! AACCATACAAAAAGCACCTA+AGG + tig0019777:47891-47910 Msa1375980:intron 35.0%
!! TTCCTTAGGTGCTTTTTGTA+TGG - tig0019777:47896-47915 None:intergenic 35.0%
CTTTAATGCTCTTAGGGAAT+AGG + tig0019777:47938-47957 Msa1375980:intron 35.0%
! AGTTAAATTTTGTTCCGTGG+TGG - tig0019777:47983-48002 None:intergenic 35.0%
ATAATATATGCAAAGGTCCG+AGG + tig0019777:48239-48258 Msa1375980:intron 35.0%
!!! TCTTTTTTTTTGTGGTGGTC+GGG - tig0019777:48272-48291 None:intergenic 35.0%
ATTTCTTAATTGTGCTCCGA+GGG - tig0019777:48505-48524 None:intergenic 35.0%
AAAGGGGATCTCTCAAAATA+AGG - tig0019777:48616-48635 None:intergenic 35.0%
GATCCTGATAAAGTATGATC+AGG + tig0019777:48705-48724 Msa1375980:intron 35.0%
CTGATAAAGTATGATCAGGA+GGG + tig0019777:48709-48728 Msa1375980:intron 35.0%
TGATAAAGTATGATCAGGAG+GGG + tig0019777:48710-48729 Msa1375980:intron 35.0%
AAGTTCATAATAAGTAGGGC+TGG + tig0019777:48977-48996 Msa1375980:intron 35.0%
GTTTATTTCCCGATACTATG+GGG - tig0019777:49228-49247 None:intergenic 35.0%
GGTTTATTTCCCGATACTAT+GGG - tig0019777:49229-49248 None:intergenic 35.0%
TGGTTTATTTCCCGATACTA+TGG - tig0019777:49230-49249 None:intergenic 35.0%
! TAGTATCGGGAAATAAACCA+TGG + tig0019777:49230-49249 Msa1375980:intron 35.0%
! GTATTTAATTTCAGGCGATG+TGG + tig0019777:49322-49341 Msa1375980:intron 35.0%
! GGATTGTAGTTCTTTTCTGA+TGG - tig0019777:49475-49494 None:intergenic 35.0%
AAATAGTTCGAGACTCGATT+CGG - tig0019777:49810-49829 None:intergenic 35.0%
!!! GAACTATTTTCGAGTTGGTT+CGG + tig0019777:49821-49840 Msa1375980:intron 35.0%
GTTATGGATCATATTCAACG+TGG + tig0019777:49911-49930 Msa1375980:intron 35.0%
TGAGATTTCCATGACAAAAG+TGG + tig0019777:49960-49979 Msa1375980:intron 35.0%
AACCATAGTTTCACTGGTAA+TGG - tig0019777:50098-50117 None:intergenic 35.0%
TTACCAGTGAAACTATGGTT+TGG + tig0019777:50098-50117 Msa1375980:intron 35.0%
AAACCAAACCATAGTTTCAC+TGG - tig0019777:50104-50123 None:intergenic 35.0%
AGTTTGTGAGTTGCTGTAAT+TGG + tig0019777:50183-50202 Msa1375980:intron 35.0%
AAAAAACTTGAGGTTGCTGT+GGG + tig0019777:50251-50270 Msa1375980:intron 35.0%
CATTATAACTCTGCAATAGC+AGG - tig0019777:50407-50426 None:intergenic 35.0%
AGAATGGCCATAATTCGATA+AGG + tig0019777:50445-50464 Msa1375980:intron 35.0%
CCATAATTCGATAAGGAGTT+GGG + tig0019777:50452-50471 Msa1375980:intron 35.0%
! ATCTTTCGATGCAAGTTTTG+TGG + tig0019777:50587-50606 Msa1375980:intron 35.0%
!! TCTTTCGATGCAAGTTTTGT+GGG + tig0019777:50588-50607 Msa1375980:intron 35.0%
GTCAATTCATCCACATTGAT+AGG + tig0019777:50624-50643 Msa1375980:intron 35.0%
GATGATATCAAAACCAACGA+CGG + tig0019777:50704-50723 Msa1375980:intron 35.0%
CTATGCAATAACACTTTGGA+AGG - tig0019777:50765-50784 None:intergenic 35.0%
GAATCATCTCTGAGTTCTTA+TGG + tig0019777:50838-50857 Msa1375980:intron 35.0%
ATCATCTCTGAGTTCTTATG+GGG + tig0019777:50840-50859 Msa1375980:intron 35.0%
!! AGAAACTGGTCTTGTAAGAT+AGG + tig0019777:50922-50941 Msa1375980:intron 35.0%
! AACTAATATGGTGTTAGAGC+TGG - tig0019777:51265-51284 None:intergenic 35.0%
GGAAACTACTTTACAACTTC+TGG - tig0019777:51426-51445 None:intergenic 35.0%
CTTACAAGCTGATATTGCAA+TGG - tig0019777:51572-51591 None:intergenic 35.0%
TTGCAATATCAGCTTGTAAG+CGG + tig0019777:51572-51591 Msa1375980:intron 35.0%
TAATTCAACTCACACAGAAC+TGG + tig0019777:51779-51798 Msa1375980:intron 35.0%
ATACCATACTTCATCCAATG+TGG + tig0019777:51844-51863 Msa1375980:intron 35.0%
TACCATACTTCATCCAATGT+GGG + tig0019777:51845-51864 Msa1375980:intron 35.0%
GACGAGTAAAACTGACAAAT+TGG - tig0019777:52105-52124 None:intergenic 35.0%
!! AAATGGGGTTTTTGATTACC+AGG - tig0019777:52288-52307 None:intergenic 35.0%
GTACAACAGTCCAGATAAAA+AGG - tig0019777:52362-52381 None:intergenic 35.0%
! CAAAACCACAAAAGAGCATA+GGG - tig0019777:52561-52580 None:intergenic 35.0%
AATCACAAACAAACATGCTC+TGG - tig0019777:52714-52733 None:intergenic 35.0%
TAGAGTATATTCAGGGAGAA+AGG - tig0019777:52853-52872 None:intergenic 35.0%
CGTACCCTACTTAAAGAAAA+GGG - tig0019777:52899-52918 None:intergenic 35.0%
! CCTTTTCTTTAAGTAGGGTA+CGG + tig0019777:52897-52916 Msa1375980:intron 35.0%
CAATCTAGTCCAAGGTTATT+TGG - tig0019777:52927-52946 None:intergenic 35.0%
TTACACTACAATCTAGTCCA+AGG - tig0019777:52935-52954 None:intergenic 35.0%
GTTCTTAAGCTCCCTAAATA+TGG + tig0019777:52982-53001 Msa1375980:intron 35.0%
GAGAAAAATAACCTTGCACA+TGG + tig0019777:53004-53023 Msa1375980:intron 35.0%
AGAGGTAGATGATCGTTATA+GGG - tig0019777:53155-53174 None:intergenic 35.0%
TAGAGGTAGATGATCGTTAT+AGG - tig0019777:53156-53175 None:intergenic 35.0%
TATTCAGAAAAGGTTACAGC+AGG - tig0019777:53306-53325 None:intergenic 35.0%
! ACTCATGGACTATTCAGAAA+AGG - tig0019777:53316-53335 None:intergenic 35.0%
AAAGAAGGGATCTTCTAATC+AGG + tig0019777:53419-53438 Msa1375980:intron 35.0%
AACATCACATAAGAAATGGG+GGG + tig0019777:53714-53733 Msa1375980:intron 35.0%
TGGATAAATAAGCTCGGTAT+TGG + tig0019777:53879-53898 Msa1375980:intron 35.0%
! TCTACCGTTGTTTCAATTTC+AGG + tig0019777:53992-54011 Msa1375980:intron 35.0%
GATAAAAATTGCCTCAGTCA+AGG - tig0019777:54143-54162 None:intergenic 35.0%
ACAGAAATAATGTGTACACG+GGG - tig0019777:54165-54184 None:intergenic 35.0%
CACAGAAATAATGTGTACAC+GGG - tig0019777:54166-54185 None:intergenic 35.0%
GCACAGAAATAATGTGTACA+CGG - tig0019777:54167-54186 None:intergenic 35.0%
!! CATTATTTCTGTGCCTAATG+TGG + tig0019777:54173-54192 Msa1375980:three_prime_UTR 35.0%
!! TTATTTCTGTGCCTAATGTG+GGG + tig0019777:54175-54194 Msa1375980:three_prime_UTR 35.0%
!!! GGAGGGTAATGCTTATTTTT+TGG + tig0019777:54202-54221 Msa1375980:three_prime_UTR 35.0%
! TTAACCACATTCTAGGAGAA+TGG + tig0019777:54298-54317 Msa1375980:three_prime_UTR 35.0%
! ATTCTAGGAGAATGGTAGAA+TGG + tig0019777:54306-54325 Msa1375980:three_prime_UTR 35.0%
! ATACTGTTCAAAAGTGTGCT+TGG - tig0019777:54430-54449 None:intergenic 35.0%
! GAGGCATTTAGTAGGAGTAT+AGG + tig0019777:45149-45168 Msa1375980:five_prime_UTR 40.0%
GAAGAAAGAAAGCAAAGCAG+AGG + tig0019777:45221-45240 Msa1375980:five_prime_UTR 40.0%
! GTTTGGAGTTAAAGTAGCAG+TGG - tig0019777:45283-45302 None:intergenic 40.0%
TAGTAACCCCCAAACAAGTT+TGG - tig0019777:45300-45319 None:intergenic 40.0%
! AGATGAAGCGATGATGGTAT+TGG - tig0019777:45328-45347 None:intergenic 40.0%
!! GAGGAGAAGGCATTGAAATT+AGG - tig0019777:45411-45430 None:intergenic 40.0%
! TAATAGGATTGGGAAGTGTG+TGG - tig0019777:45560-45579 None:intergenic 40.0%
!! CCATTCTGGAATTCGTAATC+GGG - tig0019777:45640-45659 None:intergenic 40.0%
TCATCGGAATCAAATAAGCC+TGG - tig0019777:45664-45683 None:intergenic 40.0%
TCCGATGAAGAACAACTAGT+AGG + tig0019777:45676-45695 Msa1375980:CDS 40.0%
GCCTACTAGTTGTTCTTCAT+CGG - tig0019777:45680-45699 None:intergenic 40.0%
TTCGACCATAGTTTGAACCT+GGG - tig0019777:45716-45735 None:intergenic 40.0%
GATAATCAACATCAGGAGCA+GGG - tig0019777:45771-45790 None:intergenic 40.0%
AGATAATCAACATCAGGAGC+AGG - tig0019777:45772-45791 None:intergenic 40.0%
! TAGATCACGTCCTTGATAGT+GGG + tig0019777:46203-46222 Msa1375980:intron 40.0%
TAAACATAGCCCCACTATCA+AGG - tig0019777:46216-46235 None:intergenic 40.0%
TTGTGTGTGTGTGTGTTTGT+AGG + tig0019777:46367-46386 Msa1375980:intron 40.0%
TAATGTCCAGCAGATAACTG+AGG - tig0019777:46584-46603 None:intergenic 40.0%
CCAAAAAAGCCAATAGCTCT+AGG - tig0019777:46666-46685 None:intergenic 40.0%
!!! CCTAGAGCTATTGGCTTTTT+TGG + tig0019777:46663-46682 Msa1375980:CDS 40.0%
TGAGATTCTTAGCTATGCCA+TGG + tig0019777:46722-46741 Msa1375980:CDS 40.0%
ATGCTCCAGATGTGTATATG+TGG - tig0019777:46874-46893 None:intergenic 40.0%
! ATATACACATCTGGAGCATC+TGG + tig0019777:46875-46894 Msa1375980:CDS 40.0%
! TATACACATCTGGAGCATCT+GGG + tig0019777:46876-46895 Msa1375980:CDS 40.0%
GGCTGTTTGCTTAAACTTTG+GGG - tig0019777:46968-46987 None:intergenic 40.0%
GAGGCTGTTTGCTTAAACTT+TGG - tig0019777:46970-46989 None:intergenic 40.0%
ACTGCATGTGCATTAAACAC+CGG - tig0019777:47316-47335 None:intergenic 40.0%
GAACCATACGATAAGCACTA+AGG - tig0019777:47825-47844 None:intergenic 40.0%
! TAAATTTTGTTCCGTGGTGG+AGG - tig0019777:47980-47999 None:intergenic 40.0%
TTACAAGCTCTTAGCTCAGT+TGG + tig0019777:48204-48223 Msa1375980:intron 40.0%
!!! CTTTTTTTTTGTGGTGGTCG+GGG - tig0019777:48271-48290 None:intergenic 40.0%
TTTCTTAATTGTGCTCCGAG+GGG - tig0019777:48504-48523 None:intergenic 40.0%
GATTTCTTAATTGTGCTCCG+AGG - tig0019777:48506-48525 None:intergenic 40.0%
CCTCCTGATCATACTTTATC+AGG - tig0019777:48711-48730 None:intergenic 40.0%
CCTGATAAAGTATGATCAGG+AGG + tig0019777:48708-48727 Msa1375980:intron 40.0%
GATAAAGTATGATCAGGAGG+GGG + tig0019777:48711-48730 Msa1375980:intron 40.0%
! GTGCAATTTTACCCTTAGGT+AGG - tig0019777:48777-48796 None:intergenic 40.0%
GTTGTGAACTTAGGGAATGA+CGG - tig0019777:48921-48940 None:intergenic 40.0%
! ACTTGGGTGTTGTGAACTTA+GGG - tig0019777:48929-48948 None:intergenic 40.0%
! TACTTGGGTGTTGTGAACTT+AGG - tig0019777:48930-48949 None:intergenic 40.0%
!! CAAGGTGTTTTGTTGACCTT+AGG + tig0019777:49201-49220 Msa1375980:intron 40.0%
CAACTAAGAAAGTTGTGCCA+TGG - tig0019777:49250-49269 None:intergenic 40.0%
CGACATCAAACCTTCTATGA+TGG + tig0019777:49530-49549 Msa1375980:intron 40.0%
!!! GTCTCGAACTATTTTCGAGT+TGG + tig0019777:49816-49835 Msa1375980:intron 40.0%
AAATTACACAGAAGGGGCAA+AGG + tig0019777:49874-49893 Msa1375980:intron 40.0%
!! CTTCTGATCCACTTTTGTCA+TGG - tig0019777:49971-49990 None:intergenic 40.0%
CATGACAAAAGTGGATCAGA+AGG + tig0019777:49969-49988 Msa1375980:intron 40.0%
GACCATTACCAGTGAAACTA+TGG + tig0019777:50093-50112 Msa1375980:intron 40.0%
TATTCTGTGAAGCTCGAGTT+AGG + tig0019777:50146-50165 Msa1375980:intron 40.0%
ATTCTGTGAAGCTCGAGTTA+GGG + tig0019777:50147-50166 Msa1375980:intron 40.0%
GAAAAAACTTGAGGTTGCTG+TGG + tig0019777:50250-50269 Msa1375980:intron 40.0%
AATTATGGCCATTCTAGTCG+TGG - tig0019777:50440-50459 None:intergenic 40.0%
GCCATAATTCGATAAGGAGT+TGG + tig0019777:50451-50470 Msa1375980:intron 40.0%
CCCAACTCCTTATCGAATTA+TGG - tig0019777:50455-50474 None:intergenic 40.0%
CGAGAATATGGAATCAACTC+TGG + tig0019777:50484-50503 Msa1375980:intron 40.0%
!! AAGTTTTGTGGGCCAACATT+AGG + tig0019777:50599-50618 Msa1375980:intron 40.0%
!! AGTTTTGTGGGCCAACATTA+GGG + tig0019777:50600-50619 Msa1375980:intron 40.0%
ATGAATTGACGCCCTAATGT+TGG - tig0019777:50614-50633 None:intergenic 40.0%
CAAGTTTGAGCCTATCAATG+TGG - tig0019777:50637-50656 None:intergenic 40.0%
!! GATAGGCTCAAACTTGCTAT+TGG + tig0019777:50641-50660 Msa1375980:intron 40.0%
TTATAAGTCAAAGCCGTCGT+TGG - tig0019777:50720-50739 None:intergenic 40.0%
! CGACGGCTTTGACTTATAAA+AGG + tig0019777:50721-50740 Msa1375980:intron 40.0%
TCATCTCTGAGTTCTTATGG+GGG + tig0019777:50841-50860 Msa1375980:intron 40.0%
TAAAGTGACAGCTGTAACCA+AGG + tig0019777:50898-50917 Msa1375980:intron 40.0%
AAATTGGAGTCACCTCATAG+TGG + tig0019777:50996-51015 Msa1375980:intron 40.0%
GTGATCATAACTTCCTTCCA+TGG - tig0019777:51094-51113 None:intergenic 40.0%
! TACAACTTCTGGTTACCAGT+TGG - tig0019777:51415-51434 None:intergenic 40.0%
AATATCAGCTTGTAAGCGGA+GGG + tig0019777:51576-51595 Msa1375980:intron 40.0%
!!! TCACACAGAACTGGCTTTTA+AGG + tig0019777:51788-51807 Msa1375980:intron 40.0%
ACCATACTTCATCCAATGTG+GGG + tig0019777:51846-51865 Msa1375980:intron 40.0%
ACTCTATTACACCCTTTGCA+AGG + tig0019777:51878-51897 Msa1375980:intron 40.0%
AAACTCGTTGACCTTGCAAA+GGG - tig0019777:51892-51911 None:intergenic 40.0%
TTTGCAAGGTCAACGAGTTT+GGG + tig0019777:51892-51911 Msa1375980:intron 40.0%
TCTTCCCTACCAGATTTCTT+GGG - tig0019777:51966-51985 None:intergenic 40.0%
AGCATGCATTAGAGTTCATC+TGG - tig0019777:52389-52408 None:intergenic 40.0%
TATCGTTCTCGATCCAAAAC+TGG + tig0019777:52458-52477 Msa1375980:intron 40.0%
! GGTATGCTGCGATTTTTCTT+TGG + tig0019777:52500-52519 Msa1375980:intron 40.0%
TTCTTTGGCATGAACTCTTC+AGG + tig0019777:52515-52534 Msa1375980:intron 40.0%
TCTTCAGGTCCTTTAGACAT+TGG + tig0019777:52530-52549 Msa1375980:intron 40.0%
AGGGCATAACCAATGTCTAA+AGG - tig0019777:52542-52561 None:intergenic 40.0%
! TTATGCCCTATGCTCTTTTG+TGG + tig0019777:52553-52572 Msa1375980:intron 40.0%
! CCAAAACCACAAAAGAGCAT+AGG - tig0019777:52562-52581 None:intergenic 40.0%
! CCTATGCTCTTTTGTGGTTT+TGG + tig0019777:52559-52578 Msa1375980:intron 40.0%
!! ACTTCATCTTTGCTGTTCTC+TGG + tig0019777:52617-52636 Msa1375980:intron 40.0%
CAGAACATGTGTTTCTCTGT+AGG - tig0019777:52757-52776 None:intergenic 40.0%
CCGTACCCTACTTAAAGAAA+AGG - tig0019777:52900-52919 None:intergenic 40.0%
TACGGTCTTCCAAATAACCT+TGG + tig0019777:52915-52934 Msa1375980:intron 40.0%
GTGTTCTTTATCCATGTGCA+AGG - tig0019777:53018-53037 None:intergenic 40.0%
TCTCTCACTGTAGAGTATGT+AGG + tig0019777:53335-53354 Msa1375980:intron 40.0%
CTCTCACTGTAGAGTATGTA+GGG + tig0019777:53336-53355 Msa1375980:intron 40.0%
TCTCACTGTAGAGTATGTAG+GGG + tig0019777:53337-53356 Msa1375980:intron 40.0%
AAATGGGGGGCAGTATAATA+TGG + tig0019777:53727-53746 Msa1375980:intron 40.0%
AATGGGGGGCAGTATAATAT+GGG + tig0019777:53728-53747 Msa1375980:intron 40.0%
TCTACCATTCTCCTAGAATG+TGG - tig0019777:54305-54324 None:intergenic 40.0%
! TGAAGCGATGATGGTATTGG+TGG - tig0019777:45325-45344 None:intergenic 45.0%
! GATGGTTTGGGTTTGGGTTT+GGG - tig0019777:45456-45475 None:intergenic 45.0%
CCCGATTACGAATTCCAGAA+TGG + tig0019777:45637-45656 Msa1375980:CDS 45.0%
TACGAATTCCAGAATGGTCC+AGG + tig0019777:45643-45662 Msa1375980:CDS 45.0%
CAAATAAGCCTGGACCATTC+TGG - tig0019777:45654-45673 None:intergenic 45.0%
TCCAACCCAGGTTCAAACTA+TGG + tig0019777:45708-45727 Msa1375980:CDS 45.0%
ACCATAGTTTGAACCTGGGT+TGG - tig0019777:45712-45731 None:intergenic 45.0%
CTTCGACCATAGTTTGAACC+TGG - tig0019777:45717-45736 None:intergenic 45.0%
CAGGTTCAAACTATGGTCGA+AGG + tig0019777:45715-45734 Msa1375980:CDS 45.0%
CAAACTATGGTCGAAGGTTC+AGG + tig0019777:45721-45740 Msa1375980:CDS 45.0%
ATATCACAAGTGAACGCTGG+TGG - tig0019777:45838-45857 None:intergenic 45.0%
!! GGACGTGATCTACTGATTCT+CGG - tig0019777:46195-46214 None:intergenic 45.0%
GTAGATCACGTCCTTGATAG+TGG + tig0019777:46202-46221 Msa1375980:intron 45.0%
!! AGATCACGTCCTTGATAGTG+GGG + tig0019777:46204-46223 Msa1375980:intron 45.0%
CACACACACACACAATATGG+AGG - tig0019777:46362-46381 None:intergenic 45.0%
CAAGTGCAGTGTTATGTCGA+TGG - tig0019777:46486-46505 None:intergenic 45.0%
AAGCAACCTCAGTTATCTGC+TGG + tig0019777:46575-46594 Msa1375980:intron 45.0%
CAACAAGGACCTAGAGCTAT+TGG + tig0019777:46654-46673 Msa1375980:CDS 45.0%
AAACATGGGATTCATGCACC+AGG + tig0019777:46692-46711 Msa1375980:CDS 45.0%
GGACCAATGCAGCTGTTATT+CGG + tig0019777:46897-46916 Msa1375980:CDS 45.0%
GACCAATGCAGCTGTTATTC+GGG + tig0019777:46898-46917 Msa1375980:CDS 45.0%
ACCAATGCAGCTGTTATTCG+GGG + tig0019777:46899-46918 Msa1375980:CDS 45.0%
CTGCATGTGCATTAAACACC+GGG - tig0019777:47315-47334 None:intergenic 45.0%
! AGCTCTTAGCTCAGTTGGTA+AGG + tig0019777:48209-48228 Msa1375980:intron 45.0%
ACCTTAGGACCCCATAGTAT+CGG + tig0019777:49216-49235 Msa1375980:intron 45.0%
CAACTCAAGTTCGGCTCATT+TGG + tig0019777:49755-49774 Msa1375980:intron 45.0%
AGTTGCTGTAATTGGCAACC+AGG + tig0019777:50191-50210 Msa1375980:intron 45.0%
GTTGCTGTAATTGGCAACCA+GGG + tig0019777:50192-50211 Msa1375980:intron 45.0%
CTGCACGAGACCATTGTTAT+TGG + tig0019777:50228-50247 Msa1375980:intron 45.0%
GTCCATAGGACTATAGTGAC+AGG + tig0019777:50294-50313 Msa1375980:intron 45.0%
CACCTGTCACTATAGTCCTA+TGG - tig0019777:50299-50318 None:intergenic 45.0%
CATAGGACTATAGTGACAGG+TGG + tig0019777:50297-50316 Msa1375980:intron 45.0%
GATAGCTAACTCCAGCTATG+TGG + tig0019777:50365-50384 Msa1375980:intron 45.0%
! TTCAAGTTCAGCCACATAGC+TGG - tig0019777:50379-50398 None:intergenic 45.0%
!! GGGCTGATTTGACGAGAATA+TGG + tig0019777:50472-50491 Msa1375980:intron 45.0%
TGAGCAATACTTGCTTGTGG+TGG + tig0019777:50508-50527 Msa1375980:intron 45.0%
TACAAGACCAGTTTCTGCCT+TGG - tig0019777:50918-50937 None:intergenic 45.0%
CCATGGACCAATGGTTGAAT+AGG - tig0019777:51077-51096 None:intergenic 45.0%
CCTATTCAACCATTGGTCCA+TGG + tig0019777:51074-51093 Msa1375980:intron 45.0%
TTCAACCATTGGTCCATGGA+AGG + tig0019777:51078-51097 Msa1375980:intron 45.0%
AACTTCCTTCCATGGACCAA+TGG - tig0019777:51086-51105 None:intergenic 45.0%
TTCACATGTTCTACCTTCGC+TGG - tig0019777:51228-51247 None:intergenic 45.0%
GGTAGAACATGTGAAGCCAT+CGG + tig0019777:51233-51252 Msa1375980:intron 45.0%
GAAAATGGAGTGACGAAACC+TGG + tig0019777:51488-51507 Msa1375980:intron 45.0%
CAATATCAGCTTGTAAGCGG+AGG + tig0019777:51575-51594 Msa1375980:intron 45.0%
TGTCTAGTCCTAGGCATGAA+GGG - tig0019777:51673-51692 None:intergenic 45.0%
ATGTCTAGTCCTAGGCATGA+AGG - tig0019777:51674-51693 None:intergenic 45.0%
TCCCCACATTGGATGAAGTA+TGG - tig0019777:51850-51869 None:intergenic 45.0%
ACTTCATCCAATGTGGGGAT+CGG + tig0019777:51851-51870 Msa1375980:intron 45.0%
CAAACTCGTTGACCTTGCAA+AGG - tig0019777:51893-51912 None:intergenic 45.0%
CTTTGCAAGGTCAACGAGTT+TGG + tig0019777:51891-51910 Msa1375980:intron 45.0%
ACAGCCCAAGAAATCTGGTA+GGG + tig0019777:51959-51978 Msa1375980:intron 45.0%
CTCTTCCCTACCAGATTTCT+TGG - tig0019777:51967-51986 None:intergenic 45.0%
CAAGAAATCTGGTAGGGAAG+AGG + tig0019777:51965-51984 Msa1375980:intron 45.0%
!! TGGGGTTTTTGATTACCAGG+TGG - tig0019777:52285-52304 None:intergenic 45.0%
GCACTCGTGAATAGTAGCTA+TGG + tig0019777:52581-52600 Msa1375980:intron 45.0%
!! TCTTTTGTTGCCTTGCTGTG+AGG + tig0019777:52800-52819 Msa1375980:intron 45.0%
AACAAGACATCCTCACAGCA+AGG - tig0019777:52813-52832 None:intergenic 45.0%
GCACAAGATTCCCCGTATTA+TGG + tig0019777:53057-53076 Msa1375980:intron 45.0%
TACCTCTATTAGAAGCCAGC+AGG + tig0019777:53168-53187 Msa1375980:CDS 45.0%
!! AACCTGCTGGCTTCTAATAG+AGG - tig0019777:53173-53192 None:intergenic 45.0%
GGCTAGTAGTATAAACCTGC+TGG - tig0019777:53186-53205 None:intergenic 45.0%
ACTCTACAGTGAGAGACTCA+TGG - tig0019777:53331-53350 None:intergenic 45.0%
! AAGCAAAGCAGATGACTTGC+TGG - tig0019777:54047-54066 None:intergenic 45.0%
GCTTTGCTTTCCATGACAGT+AGG + tig0019777:54058-54077 Msa1375980:CDS 45.0%
ACTCTCTTCTACCTTGACTG+AGG + tig0019777:54129-54148 Msa1375980:CDS 45.0%
!!! TATTTTGAATTTTAATTTAA+TGG + tig0019777:45520-45539 Msa1375980:intron 5.0%
!! TGAAATAAATTTAAATTTAT+AGG + tig0019777:48383-48402 Msa1375980:intron 5.0%
!!! AATATAGTTTTTATTTTTTT+TGG - tig0019777:49179-49198 None:intergenic 5.0%
AAGCAAAGCAGAGGTGAGTG+AGG + tig0019777:45230-45249 Msa1375980:five_prime_UTR 50.0%
AGCAAAGCAGAGGTGAGTGA+GGG + tig0019777:45231-45250 Msa1375980:five_prime_UTR 50.0%
GAGGGGAAAATCGAGGAAGA+AGG + tig0019777:45249-45268 Msa1375980:five_prime_UTR 50.0%
! GGATGGTTTGGGTTTGGGTT+TGG - tig0019777:45457-45476 None:intergenic 50.0%
! GAGAGGGATGGTTTGGGTTT+GGG - tig0019777:45462-45481 None:intergenic 50.0%
! TGAGAGGGATGGTTTGGGTT+TGG - tig0019777:45463-45482 None:intergenic 50.0%
CGTGTTGAGAGGGATGGTTT+GGG - tig0019777:45468-45487 None:intergenic 50.0%
CCAAACCATCCCTCTCAACA+CGG + tig0019777:45466-45485 Msa1375980:CDS 50.0%
ATCCCTCTCAACACGGACAA+CGG + tig0019777:45473-45492 Msa1375980:CDS 50.0%
TACCGTTGTCCGTGTTGAGA+GGG - tig0019777:45478-45497 None:intergenic 50.0%
AGGCACTCAAATTCCAACCC+AGG + tig0019777:45696-45715 Msa1375980:CDS 50.0%
! TCGAAGGTTCAGGTTCCATC+AGG + tig0019777:45731-45750 Msa1375980:CDS 50.0%
! CGAAGGTTCAGGTTCCATCA+GGG + tig0019777:45732-45751 Msa1375980:CDS 50.0%
GTTGTAGTCGGATACCCTGA+TGG - tig0019777:45749-45768 None:intergenic 50.0%
ATCAGGAGCAGGGTTGTAGT+CGG - tig0019777:45761-45780 None:intergenic 50.0%
! TGGTCAATGGTGATGTGGCA+GGG - tig0019777:46421-46440 None:intergenic 50.0%
! ATGGTCAATGGTGATGTGGC+AGG - tig0019777:46422-46441 None:intergenic 50.0%
CAGTGTTATGTCGATGGCTG+CGG - tig0019777:46480-46499 None:intergenic 50.0%
ACCCCGAATAACAGCTGCAT+TGG - tig0019777:46903-46922 None:intergenic 50.0%
! GAGTCGAACTTGCTTCAGCT+CGG + tig0019777:49014-49033 Msa1375980:intron 50.0%
ATTCAAGCTCACGAGCAGCT+CGG + tig0019777:49118-49137 Msa1375980:intron 50.0%
CCTTAGGACCCCATAGTATC+GGG + tig0019777:49217-49236 Msa1375980:intron 50.0%
AGGCGATGTGGGACAAAAAC+AGG + tig0019777:49334-49353 Msa1375980:intron 50.0%
GCAGCAGAAACATCAAACCC+TGG - tig0019777:50212-50231 None:intergenic 50.0%
GTTGCTGTGGGCAAAATTGC+TGG + tig0019777:50263-50282 Msa1375980:intron 50.0%
TCAACCCTCCCATACCTCAA+GGG - tig0019777:50327-50346 None:intergenic 50.0%
TTCAACCCTCCCATACCTCA+AGG - tig0019777:50328-50347 None:intergenic 50.0%
GGCTGAGCAATACTTGCTTG+TGG + tig0019777:50505-50524 Msa1375980:intron 50.0%
GCTGTAACCAAGGCAGAAAC+TGG + tig0019777:50908-50927 Msa1375980:intron 50.0%
ACATGTTCTACCTTCGCTGG+AGG - tig0019777:51225-51244 None:intergenic 50.0%
TTAGAGCTGGAGATCTCCGA+TGG - tig0019777:51252-51271 None:intergenic 50.0%
GTGTGTTGAGACTCCCACAT+TGG - tig0019777:51649-51668 None:intergenic 50.0%
AACACACACCCTTCATGCCT+AGG + tig0019777:51662-51681 Msa1375980:intron 50.0%
CATGCCTAGGACTAGACATC+TGG + tig0019777:51675-51694 Msa1375980:intron 50.0%
CACTCCAGATGTCTAGTCCT+AGG - tig0019777:51682-51701 None:intergenic 50.0%
TGACATGAGTAGCCCAGTAG+TGG + tig0019777:51702-51721 Msa1375980:intron 50.0%
GACATGAGTAGCCCAGTAGT+GGG + tig0019777:51703-51722 Msa1375980:intron 50.0%
!!! CTGGCTTTTAAGGCGAGAGA+TGG + tig0019777:51798-51817 Msa1375980:intron 50.0%
AGTTGTTCCGATCCCCACAT+TGG - tig0019777:51861-51880 None:intergenic 50.0%
ACGCACAGACACACTAAGCT+TGG + tig0019777:51933-51952 Msa1375980:intron 50.0%
CACAGCCCAAGAAATCTGGT+AGG + tig0019777:51958-51977 Msa1375980:intron 50.0%
AATCTGGTAGGGAAGAGGTG+TGG + tig0019777:51970-51989 Msa1375980:intron 50.0%
! TTGCACGAGAGTCTAAGACG+GGG - tig0019777:53268-53287 None:intergenic 50.0%
! CTTGCACGAGAGTCTAAGAC+GGG - tig0019777:53269-53288 None:intergenic 50.0%
CCTTGCACGAGAGTCTAAGA+CGG - tig0019777:53270-53289 None:intergenic 50.0%
CGTCTTAGACTCTCGTGCAA+GGG + tig0019777:53268-53287 Msa1375980:intron 50.0%
CCATGAGCAACCTACTGTCA+TGG - tig0019777:54071-54090 None:intergenic 50.0%
CCATGACAGTAGGTTGCTCA+TGG + tig0019777:54068-54087 Msa1375980:CDS 50.0%
TCTGTGCCTAATGTGGGGAT+TGG + tig0019777:54180-54199 Msa1375980:three_prime_UTR 50.0%
CTGTGCCTAATGTGGGGATT+GGG + tig0019777:54181-54200 Msa1375980:three_prime_UTR 50.0%
GCAAAGCAGAGGTGAGTGAG+GGG + tig0019777:45232-45251 Msa1375980:five_prime_UTR 55.0%
GGTGAGTGAGGGGAAAATCG+AGG + tig0019777:45242-45261 Msa1375980:five_prime_UTR 55.0%
AGCAGACAAGGAGGAGGAGA+AGG - tig0019777:45424-45443 None:intergenic 55.0%
GAGAGAAGCAGACAAGGAGG+AGG - tig0019777:45430-45449 None:intergenic 55.0%
CGAGAGAGAAGCAGACAAGG+AGG - tig0019777:45433-45452 None:intergenic 55.0%
CCGTGTTGAGAGGGATGGTT+TGG - tig0019777:45469-45488 None:intergenic 55.0%
GTTGTCCGTGTTGAGAGGGA+TGG - tig0019777:45474-45493 None:intergenic 55.0%
GTACCGTTGTCCGTGTTGAG+AGG - tig0019777:45479-45498 None:intergenic 55.0%
TCACAAGTGAACGCTGGTGG+AGG - tig0019777:45835-45854 None:intergenic 55.0%
! GTCAATGGTGATGTGGCAGG+GGG - tig0019777:46419-46438 None:intergenic 55.0%
! GGTCAATGGTGATGTGGCAG+GGG - tig0019777:46420-46439 None:intergenic 55.0%
TCGATGGCTGCGGTTCATAG+GGG - tig0019777:46470-46489 None:intergenic 55.0%
GTCGATGGCTGCGGTTCATA+GGG - tig0019777:46471-46490 None:intergenic 55.0%
TGTCGATGGCTGCGGTTCAT+AGG - tig0019777:46472-46491 None:intergenic 55.0%
GCAAACAGCCTCCAGAGAGT+CGG + tig0019777:46978-46997 Msa1375980:CDS 55.0%
CAAACAGCCTCCAGAGAGTC+GGG + tig0019777:46979-46998 Msa1375980:CDS 55.0%
GATAACAGCTCCCGACTCTC+TGG - tig0019777:46992-47011 None:intergenic 55.0%
GAGTCGGGAGCTGTTATCCA+AGG + tig0019777:46994-47013 Msa1375980:CDS 55.0%
TTCACGTCTAGCCTCCACCA+CGG + tig0019777:47966-47985 Msa1375980:intron 55.0%
TTTAACGTGTCCTCGCCCCT+CGG + tig0019777:48486-48505 Msa1375980:intron 55.0%
CCCGATACTATGGGGTCCTA+AGG - tig0019777:49220-49239 None:intergenic 55.0%
GCTGTGGGCAAAATTGCTGG+TGG + tig0019777:50266-50285 Msa1375980:intron 55.0%
GTGGGCAAAATTGCTGGTGG+AGG + tig0019777:50269-50288 Msa1375980:intron 55.0%
TGCTGGTGGAGGTTGTCCAT+AGG + tig0019777:50280-50299 Msa1375980:intron 55.0%
GTGGCTCTCCCTTGAGGTAT+GGG + tig0019777:50316-50335 Msa1375980:intron 55.0%
CTCTCCCTTGAGGTATGGGA+GGG + tig0019777:50320-50339 Msa1375980:intron 55.0%
CATTCTAGTCGTGGCTGTGC+AGG - tig0019777:50431-50450 None:intergenic 55.0%
CTGCACAGCCACGACTAGAA+TGG + tig0019777:50429-50448 Msa1375980:intron 55.0%
TCTACCTTCGCTGGAGGTTG+TGG - tig0019777:51219-51238 None:intergenic 55.0%
! ATGAGTAGCCCAGTAGTGGG+TGG + tig0019777:51706-51725 Msa1375980:intron 55.0%
TTGTTGGGCCACCCACTACT+GGG - tig0019777:51717-51736 None:intergenic 55.0%
TTTGTTGGGCCACCCACTAC+TGG - tig0019777:51718-51737 None:intergenic 55.0%
CGAGTTTGGGAGACTGCAGA+AGG + tig0019777:51905-51924 Msa1375980:intron 55.0%
GGAGCACAGCCCAAGAAATC+TGG + tig0019777:51954-51973 Msa1375980:intron 55.0%
TCTGGTGTTTACGACAGCCG+TGG + tig0019777:52635-52654 Msa1375980:intron 55.0%
GCCATGCCTATTTCCAGCCA+CGG - tig0019777:52655-52674 None:intergenic 55.0%
TGGCTGGAAATAGGCATGGC+TGG + tig0019777:52655-52674 Msa1375980:intron 55.0%
GGCTGGAAATAGGCATGGCT+GGG + tig0019777:52656-52675 Msa1375980:intron 55.0%
CCGTCTTAGACTCTCGTGCA+AGG + tig0019777:53267-53286 Msa1375980:intron 55.0%
TGCCTAATGTGGGGATTGGG+AGG + tig0019777:54184-54203 Msa1375980:three_prime_UTR 55.0%
GCCTAATGTGGGGATTGGGA+GGG + tig0019777:54185-54204 Msa1375980:three_prime_UTR 55.0%
ACCCTCCCAATCCCCACATT+AGG - tig0019777:54189-54208 None:intergenic 55.0%
GGGCGAGAGAGAAGCAGACA+AGG - tig0019777:45436-45455 None:intergenic 60.0%
GTGAACGCTGGTGGAGGAGT+TGG - tig0019777:45829-45848 None:intergenic 60.0%
AACAGCTCCCGACTCTCTGG+AGG - tig0019777:46989-47008 None:intergenic 60.0%
GGTGGTCGGGGTTTGAACCT+CGG - tig0019777:48259-48278 None:intergenic 60.0%
TAATTGTGCTCCGAGGGGCG+AGG - tig0019777:48499-48518 None:intergenic 60.0%
GCAGCTCGGTTCAGCTCGAT+AGG + tig0019777:49132-49151 Msa1375980:intron 60.0%
TGACAGGTGGCTCTCCCTTG+AGG + tig0019777:50310-50329 Msa1375980:intron 60.0%
GGTGGCTCTCCCTTGAGGTA+TGG + tig0019777:50315-50334 Msa1375980:intron 60.0%
GCTCTCCCTTGAGGTATGGG+AGG + tig0019777:50319-50338 Msa1375980:intron 60.0%
GTGTTTACGACAGCCGTGGC+TGG + tig0019777:52639-52658 Msa1375980:intron 60.0%
CGACAGCCGTGGCTGGAAAT+AGG + tig0019777:52646-52665 Msa1375980:intron 60.0%
GCCGTGGCTGGAAATAGGCA+TGG + tig0019777:52651-52670 Msa1375980:intron 60.0%
! GGTGCCACAACCTCCAGCGA+AGG + tig0019777:51212-51231 Msa1375980:intron 65.0%
Chromosome Type Strat End Strand Name
tig0019777 gene 45149 54484 45149 ID=Msa1375980;Name=Msa1375980
tig0019777 mRNA 45149 54484 45149 ID=Msa1375980-mRNA-1;Parent=Msa1375980;Name=Msa1375980-mRNA-1;_AED=0.06;_eAED=0.06;_QI=124|1|1|1|0.8|1|6|335|293
tig0019777 exon 45149 45494 45149 ID=Msa1375980-mRNA-1:exon:4802;Parent=Msa1375980-mRNA-1
tig0019777 exon 45598 45795 45598 ID=Msa1375980-mRNA-1:exon:4803;Parent=Msa1375980-mRNA-1
tig0019777 exon 46636 46752 46636 ID=Msa1375980-mRNA-1:exon:4804;Parent=Msa1375980-mRNA-1
tig0019777 exon 46866 47015 46866 ID=Msa1375980-mRNA-1:exon:4805;Parent=Msa1375980-mRNA-1
tig0019777 exon 53131 53189 53131 ID=Msa1375980-mRNA-1:exon:4806;Parent=Msa1375980-mRNA-1
tig0019777 exon 54014 54484 54014 ID=Msa1375980-mRNA-1:exon:4807;Parent=Msa1375980-mRNA-1
tig0019777 five_prime_UTR 45149 45272 45149 ID=Msa1375980-mRNA-1:five_prime_utr;Parent=Msa1375980-mRNA-1
tig0019777 CDS 45273 45494 45273 ID=Msa1375980-mRNA-1:cds;Parent=Msa1375980-mRNA-1
tig0019777 CDS 45598 45795 45598 ID=Msa1375980-mRNA-1:cds;Parent=Msa1375980-mRNA-1
tig0019777 CDS 46636 46752 46636 ID=Msa1375980-mRNA-1:cds;Parent=Msa1375980-mRNA-1
tig0019777 CDS 46866 47015 46866 ID=Msa1375980-mRNA-1:cds;Parent=Msa1375980-mRNA-1
tig0019777 CDS 53131 53189 53131 ID=Msa1375980-mRNA-1:cds;Parent=Msa1375980-mRNA-1
tig0019777 CDS 54014 54149 54014 ID=Msa1375980-mRNA-1:cds;Parent=Msa1375980-mRNA-1
tig0019777 three_prime_UTR 54150 54484 54150 ID=Msa1375980-mRNA-1:three_prime_utr;Parent=Msa1375980-mRNA-1
Gene Sequence

>Msa1375980

ATGAGTGCCACTGCTACTTTAACTCCAAACTTGTTTGGGGGTTACTACACCACCAATACCATCATCGCTTCATCTTCATATCTATTCTATCCACATCCACATTATTATTCTTCTTTCAATAAGGACAAGCCAAACCCTAATTTCAATGCCTTCTCCTCCTCCTTGTCTGCTTCTCTCTCGCCCAAACCCAAACCCAAACCATCCCTCTCAACACGGACAACGTGTCTTTATGGACATAATAACATGAATAGAGATCAAGATCCCGATTACGAATTCCAGAATGGTCCAGGCTTATTTGATTCCGATGAAGAACAACTAGTAGGCACTCAAATTCCAACCCAGGTTCAAACTATGGTCGAAGGTTCAGGTTCCATCAGGGTATCCGACTACAACCCTGCTCCTGATGTTGATTATCTACAGGAGTTATTGGCTATTCAACAACAAGGACCTAGAGCTATTGGCTTTTTTGGAACACGAAACATGGGATTCATGCACCAGGAACTAATTGAGATTCTTAGCTATGCCATGGTTATAACTAAAAACCACATATACACATCTGGAGCATCTGGGACCAATGCAGCTGTTATTCGGGGTGCTTTAAGAGCAGAGAAACCAGAATTGCTTACAGTTATATTACCCCAAAGTTTAAGCAAACAGCCTCCAGAGAGTCGGGAGCTGTTATCCAAGGTGAAAAATGTGATAGAGAAGCCCTATAACGATCATCTACCTCTATTAGAAGCCAGCAGGCTATGTAATATGGATATCATTTCACACGTCCAGCAAGTCATCTGCTTTGCTTTCCATGACAGTAGGTTGCTCATGGAAACTTGTCAAGAAGCAAAAAATTTGCGGAAAATTGTGACTCTCTTCTACCTTGACTGA

Protein sequence

>Msa1375980

MSATATLTPNLFGGYYTTNTIIASSSYLFYPHPHYYSSFNKDKPNPNFNAFSSSLSASLSPKPKPKPSLSTRTTCLYGHNNMNRDQDPDYEFQNGPGLFDSDEEQLVGTQIPTQVQTMVEGSGSIRVSDYNPAPDVDYLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYAMVITKNHIYTSGASGTNAAVIRGALRAEKPELLTVILPQSLSKQPPESRELLSKVKNVIEKPYNDHLPLLEASRLCNMDIISHVQQVICFAFHDSRLLMETCQEAKNLRKIVTLFYLD*