AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0069150


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0069150 MtrunA17_Chr1g0192381 72.650 117 25 1 1 110 3 119 2.14e-45 147
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0069150 AT3G05625.2 59.406 101 35 4 15 110 10 109 1.09e-28 103
Msa0069150 AT3G05625.1 59.406 101 35 4 15 110 10 109 6.76e-28 102

Find 111 sgRNAs with CRISPR-Local

Find 203 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTTCCTTCCTTCTGTTTC+CGG 0.124019 1_2:-37346258 Msa0069150:CDS
TTCACTGTCTTTGCCGAAAT+TGG 0.138782 1_2:-37343806 Msa0069150:three_prime_UTR
TTCCTTCTGTTTCCGGCATC+TGG 0.151607 1_2:-37346251 Msa0069150:CDS
GTAAGGTGGTGGTGGGTTTA+AGG 0.160107 1_2:+37346370 None:intergenic
TCGTAAATATCAATTGAATT+TGG 0.223429 1_2:-37345956 Msa0069150:exon
AATGGCGCGGATTTAATTAT+TGG 0.223696 1_2:+37346444 None:intergenic
CATTTGTTAGGGTGATGTTT+TGG 0.230806 1_2:-37346059 Msa0069150:intron
GGTTTAAGGTTGTGGATAAT+TGG 0.241491 1_2:+37346384 None:intergenic
GCTGCTTGCAAATCTCCTTA+TGG 0.251539 1_2:-37343960 Msa0069150:three_prime_UTR
ATTGAATTTGGAATTGGAAT+TGG 0.276732 1_2:-37345944 Msa0069150:three_prime_UTR
ATGCAGGTCTGATGATTATA+TGG 0.301057 1_2:-37343844 Msa0069150:intron
CTGTGTGAAGCTCAACTATA+TGG 0.307850 1_2:-37344824 Msa0069150:three_prime_UTR
TTCAGCTGAAGTTCCAATTT+CGG 0.309631 1_2:+37343793 None:intergenic
ATATCAATTGAATTTGGAAT+TGG 0.313291 1_2:-37345950 Msa0069150:three_prime_UTR
GGAAACATATAACATGTTTA+AGG 0.318035 1_2:-37344650 Msa0069150:three_prime_UTR
ATAATCGCTTTCTCTGCTAT+TGG 0.320277 1_2:+37344451 None:intergenic
TTAGATGAGTGAACTACATT+AGG 0.328037 1_2:-37343434 Msa0069150:three_prime_UTR
GATTTACCCGTGTAGCTTGT+AGG 0.333350 1_2:-37344482 Msa0069150:intron
GAGTTCCAATACCAGATCTT+TGG 0.336848 1_2:-37345905 Msa0069150:three_prime_UTR
CTGCTTGCAAATCTCCTTAT+GGG 0.339629 1_2:-37343959 Msa0069150:three_prime_UTR
ATGGACTCTTCCGTATCATT+TGG 0.341909 1_2:+37344857 None:intergenic
CAAATGGTGGGACCCCTTCC+CGG 0.367038 1_2:-37343531 Msa0069150:three_prime_UTR
AAGAAGGAGCTGAGCAGTTT+CGG 0.373836 1_2:-37344898 Msa0069150:three_prime_UTR
TTACACAAGAGGCTGTTTCC+AGG 0.376147 1_2:+37343583 None:intergenic
GTTTGGTAAAGCAATTGAAT+TGG 0.379643 1_2:-37346023 Msa0069150:CDS
CGGGAAGGGGTCCCACCATT+TGG 0.381455 1_2:+37343532 None:intergenic
AATTGCAAGAAGGGCTTCAT+TGG 0.387452 1_2:+37346194 None:intergenic
AATTGATATTTACGAAAGTT+CGG 0.392621 1_2:+37345964 None:intergenic
AGTCTTCGAGAGAGATTTGA+AGG 0.396830 1_2:+37346279 None:intergenic
TTGGGGTCTGTCGTGGAGTT+TGG 0.405552 1_2:-37346040 Msa0069150:CDS
AAATCAAACCTTTGCCCATA+AGG 0.405834 1_2:+37343945 None:intergenic
TGGTGGTGGGTTTAAGGTTG+TGG 0.410506 1_2:+37346376 None:intergenic
TCCTTCTGTTTCCGGCATCT+GGG 0.413953 1_2:-37346250 Msa0069150:CDS
TGAAGGATTGGAGCAAAAGA+TGG 0.433606 1_2:+37346296 None:intergenic
GCATACGCAGGGTCCGGGAA+GGG 0.438816 1_2:+37343518 None:intergenic
CATACGCAGGGTCCGGGAAG+GGG 0.441791 1_2:+37343519 None:intergenic
GCTCCCGCATACGCAGGGTC+CGG 0.442051 1_2:+37343512 None:intergenic
TGAATATTAGTTGACTGTAC+TGG 0.442168 1_2:-37343652 Msa0069150:three_prime_UTR
GTTTCCCTCATGACAGGCCT+TGG 0.443161 1_2:+37344667 None:intergenic
TGAGTCACGGGTTCAAGTCC+TGG 0.444715 1_2:-37343601 Msa0069150:three_prime_UTR
GGCATCTGGGACGCCATCAC+CGG 0.445468 1_2:-37346237 Msa0069150:CDS
GACGCCATCACCGGCGGCAG+CGG 0.446702 1_2:-37346228 Msa0069150:CDS
TCGAGAGAGATTTGAAGGAT+TGG 0.454213 1_2:+37346284 None:intergenic
TTCCCGGACCCTGCGTATGC+GGG 0.454460 1_2:-37343515 Msa0069150:three_prime_UTR
CTTTGCCAAAGATCTGGTAT+TGG 0.457446 1_2:+37345900 None:intergenic
AATACCAGATCTTTGGCAAA+GGG 0.465803 1_2:-37345898 Msa0069150:three_prime_UTR
GGGTCTCTCACTTTACTACT+TGG 0.470031 1_2:-37345877 Msa0069150:three_prime_UTR
TGGGAATGGTGAAGAAAGGG+AGG 0.470523 1_2:+37346341 None:intergenic
GGAATGGTGAAGAAAGGGAG+GGG 0.472443 1_2:+37346343 None:intergenic
AGACCCCTTTGCCAAAGATC+TGG 0.474935 1_2:+37345894 None:intergenic
CTCCCGCATACGCAGGGTCC+GGG 0.477983 1_2:+37343513 None:intergenic
ATTGCCGCTGCCGCCGGTGA+TGG 0.479013 1_2:+37346224 None:intergenic
ATGCGGGAGCTTTAGTGCAC+CGG 0.481830 1_2:-37343499 Msa0069150:three_prime_UTR
GGGGAGAGTAAGGTGGTGGT+GGG 0.482670 1_2:+37346363 None:intergenic
CTTCCCGGACCCTGCGTATG+CGG 0.488315 1_2:-37343516 Msa0069150:three_prime_UTR
TTTATGCTTCGCTATATGCT+GGG 0.488456 1_2:-37344427 Msa0069150:three_prime_UTR
TATGTACTTCATTGAGTCAC+GGG 0.490309 1_2:-37343613 Msa0069150:three_prime_UTR
TGGGCTTTATTACGAATCTC+AGG 0.491384 1_2:-37344408 Msa0069150:intron
GGTGATGGCGTCCCAGATGC+CGG 0.498720 1_2:+37346239 None:intergenic
CGCATACGCAGGGTCCGGGA+AGG 0.499824 1_2:+37343517 None:intergenic
GTTGTTATTGCCGCTGCCGC+CGG 0.501222 1_2:+37346218 None:intergenic
GAAGGATTGGAGCAAAAGAT+GGG 0.507555 1_2:+37346297 None:intergenic
GAATGGTGAAGAAAGGGAGG+GGG 0.510959 1_2:+37346344 None:intergenic
TGAATTGGATCCTCGTCAAA+AGG 0.513209 1_2:-37346008 Msa0069150:CDS
TGATGGGAATGGTGAAGAAA+GGG 0.514552 1_2:+37346338 None:intergenic
ATGATACGGAAGAGTCCATA+TGG 0.514782 1_2:-37344853 Msa0069150:three_prime_UTR
TTATATGTTTCCCTCATGAC+AGG 0.514876 1_2:+37344661 None:intergenic
AAAATTAAGTAAAATGATGA+AGG 0.521273 1_2:+37343686 None:intergenic
TTATATGGCTTCTCTTTCCA+AGG 0.521826 1_2:-37343829 Msa0069150:three_prime_UTR
GCAAATCTCCTTATGGGCAA+AGG 0.522193 1_2:-37343953 Msa0069150:intron
GCTGCGTACAATACACCAAA+TGG 0.522967 1_2:-37343547 Msa0069150:three_prime_UTR
TATAACATGTTTAAGGATGG+TGG 0.523328 1_2:-37344643 Msa0069150:three_prime_UTR
TCCTCGTCGAATTGCAAGAA+GGG 0.524837 1_2:+37346185 None:intergenic
TTCACACAGAAAACACCATA+TGG 0.527292 1_2:+37344838 None:intergenic
ATAACATGTTTAAGGATGGT+GGG 0.535247 1_2:-37344642 Msa0069150:three_prime_UTR
TGCTCAAAATCCAAATGATA+CGG 0.539447 1_2:-37344867 Msa0069150:three_prime_UTR
GGATGGTGGGGATCCTGAAA+AGG 0.539874 1_2:-37344629 Msa0069150:intron
ATGATGGGAATGGTGAAGAA+AGG 0.540510 1_2:+37346337 None:intergenic
AAGGTTGTGGATAATTGGCA+TGG 0.556289 1_2:+37346389 None:intergenic
ACTAAAGCTCCCGCATACGC+AGG 0.556851 1_2:+37343506 None:intergenic
TCTCACTTTACTACTTGGAT+AGG 0.560440 1_2:-37345872 Msa0069150:intron
TGCGGGAGCTTTAGTGCACC+GGG 0.564240 1_2:-37343498 Msa0069150:three_prime_UTR
CAATACCAGATCTTTGGCAA+AGG 0.566948 1_2:-37345899 Msa0069150:three_prime_UTR
ATATGTACTTCATTGAGTCA+CGG 0.567764 1_2:-37343614 Msa0069150:three_prime_UTR
TCGGCAAAGACAGTGAACCT+TGG 0.571507 1_2:+37343812 None:intergenic
ATCTGGGACGCCATCACCGG+CGG 0.572114 1_2:-37346234 Msa0069150:CDS
GTTTGAAAGATGATGATGAT+GGG 0.579584 1_2:+37346322 None:intergenic
TCCCAGATGCCGGAAACAGA+AGG 0.582501 1_2:+37346249 None:intergenic
ACATATAACATGTTTAAGGA+TGG 0.584854 1_2:-37344646 Msa0069150:three_prime_UTR
GATAATTGGCATGGACATAG+TGG 0.585166 1_2:+37346398 None:intergenic
TTCCTCGTCGAATTGCAAGA+AGG 0.589113 1_2:+37346184 None:intergenic
TAACATGTTTAAGGATGGTG+GGG 0.591570 1_2:-37344641 Msa0069150:three_prime_UTR
TTTAGGTTGGCAGAGATCCA+AGG 0.592463 1_2:-37344684 Msa0069150:intron
AGGAATGTCTCTCTTCAGAC+AGG 0.594107 1_2:-37346166 Msa0069150:intron
GAGATCCAAGGCCTGTCATG+AGG 0.597114 1_2:-37344672 Msa0069150:three_prime_UTR
TACGTTACAGTCTAAAGAGA+TGG 0.597432 1_2:-37343729 Msa0069150:three_prime_UTR
GCGTACAATACACCAAATGG+TGG 0.601920 1_2:-37343544 Msa0069150:three_prime_UTR
GGGAATGGTGAAGAAAGGGA+GGG 0.602416 1_2:+37346342 None:intergenic
GGTTTGAAAGATGATGATGA+TGG 0.602991 1_2:+37346321 None:intergenic
CTAAAGCTCCCGCATACGCA+GGG 0.605962 1_2:+37343507 None:intergenic
GGATTGGAGCAAAAGATGGG+TGG 0.615577 1_2:+37346300 None:intergenic
AAAGATGATGATGATGGGAA+TGG 0.631089 1_2:+37346327 None:intergenic
AGCAAGAAAGCGATATCTTG+AGG 0.633760 1_2:-37344792 Msa0069150:intron
AGATCCAAGGCCTGTCATGA+GGG 0.634537 1_2:-37344671 Msa0069150:three_prime_UTR
ATTGGCATGGACATAGTGGA+AGG 0.636804 1_2:+37346402 None:intergenic
AGATGCCGGAAACAGAAGGA+AGG 0.639435 1_2:+37346253 None:intergenic
ATACCAGATCTTTGGCAAAG+GGG 0.650824 1_2:-37345897 Msa0069150:three_prime_UTR
ATCCTCGTCAAAAGGCGTGT+AGG 0.656501 1_2:-37346000 Msa0069150:CDS
GCCCTTCTTGCAATTCGACG+AGG 0.664402 1_2:-37346186 Msa0069150:CDS
CGTACAATACACCAAATGGT+GGG 0.668975 1_2:-37343543 Msa0069150:three_prime_UTR
TGAAGCTCAACTATATGGTG+TGG 0.677146 1_2:-37344819 Msa0069150:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTAAATGAATTAAAAAAGT+TGG + chr1_2:37344366-37344385 None:intergenic 10.0%
!!! AAGTACATTTTATTTAATAA+GGG - chr1_2:37344645-37344664 Msa0069150:three_prime_UTR 10.0%
!! TTAAAAAATAAGATATGAAA+TGG + chr1_2:37344752-37344771 None:intergenic 10.0%
!! TATTATAAAAATCATTCATT+TGG + chr1_2:37344915-37344934 None:intergenic 10.0%
!!! TTATTTTATGAAATTTACAA+AGG + chr1_2:37345266-37345285 None:intergenic 10.0%
!!! CAAGTACATTTTATTTAATA+AGG - chr1_2:37344644-37344663 Msa0069150:three_prime_UTR 15.0%
!! TCTGAATATATTATAACAAA+AGG - chr1_2:37344865-37344884 Msa0069150:three_prime_UTR 15.0%
!! AGATTATATATACATCATAT+TGG - chr1_2:37345541-37345560 Msa0069150:intron 15.0%
!!! TATACTTTATTGTTACTTTT+TGG - chr1_2:37345670-37345689 Msa0069150:intron 15.0%
!! AAAATTAAGTAAAATGATGA+AGG + chr1_2:37346172-37346191 None:intergenic 15.0%
!! TTTCAATGAAGTAAAAAAAA+GGG + chr1_2:37346386-37346405 None:intergenic 15.0%
!! ATTTCAATGAAGTAAAAAAA+AGG + chr1_2:37346387-37346406 None:intergenic 15.0%
!! GTGAGAACAAAAAAAAAATA+AGG + chr1_2:37343738-37343757 None:intergenic 20.0%
!! TTCTCACAAAATATCTTTAA+TGG - chr1_2:37343751-37343770 Msa0069150:three_prime_UTR 20.0%
!! AATTGATATTTACGAAAGTT+CGG + chr1_2:37343894-37343913 None:intergenic 20.0%
!! TCGTAAATATCAATTGAATT+TGG - chr1_2:37343899-37343918 Msa0069150:intron 20.0%
!!! ATATCAATTGAATTTGGAAT+TGG - chr1_2:37343905-37343924 Msa0069150:intron 20.0%
!! ATACAAGCTTAATCTAAATT+AGG - chr1_2:37344241-37344260 Msa0069150:intron 20.0%
!!! GTCTATATTTTTAAGAAGAA+TGG + chr1_2:37344396-37344415 None:intergenic 20.0%
!! GAAAGAATATATTCTGATAA+TGG - chr1_2:37344477-37344496 Msa0069150:intron 20.0%
!! TTAACTTTCTTGATGAATTT+AGG - chr1_2:37345154-37345173 Msa0069150:intron 20.0%
!! TAATACACAATATTTCAGTT+TGG + chr1_2:37345733-37345752 None:intergenic 20.0%
!!! CATCATTTTACTTAATTTTG+TGG - chr1_2:37346173-37346192 Msa0069150:CDS 20.0%
! AACTGGATAATAACTGATAA+TGG + chr1_2:37343432-37343451 None:intergenic 25.0%
!! ATTGAATTTGGAATTGGAAT+TGG - chr1_2:37343911-37343930 Msa0069150:intron 25.0%
! TTATAGCTTCTACAAAATCA+CGG + chr1_2:37344167-37344186 None:intergenic 25.0%
! ATTTAGATTAAGCTTGTATG+TGG + chr1_2:37344240-37344259 None:intergenic 25.0%
!!! ACAATTTTGTGTCATTAGTT+AGG + chr1_2:37344444-37344463 None:intergenic 25.0%
! ACTAATGACACAAAATTGTA+CGG - chr1_2:37344445-37344464 Msa0069150:three_prime_UTR 25.0%
!!! AGAATATATTCTGATAATGG+TGG - chr1_2:37344480-37344499 Msa0069150:intron 25.0%
! TAGTACAATATGACATGTAT+AGG + chr1_2:37344789-37344808 None:intergenic 25.0%
!! TTTTTCCATAGATTTGAAGA+AGG - chr1_2:37344941-37344960 Msa0069150:intron 25.0%
!!! ATTGTCATGTTCTTTTTTCA+CGG + chr1_2:37345122-37345141 None:intergenic 25.0%
! GGAAACATATAACATGTTTA+AGG - chr1_2:37345205-37345224 Msa0069150:intron 25.0%
! ACATATAACATGTTTAAGGA+TGG - chr1_2:37345209-37345228 Msa0069150:intron 25.0%
! ACTGCATTTAAATTGTGAAA+GGG + chr1_2:37345294-37345313 None:intergenic 25.0%
! AACTGCATTTAAATTGTGAA+AGG + chr1_2:37345295-37345314 None:intergenic 25.0%
! TATCAGATTGCATTTCATAA+AGG + chr1_2:37345344-37345363 None:intergenic 25.0%
! TAGTAAGGAAAGAAAAATGT+TGG + chr1_2:37345487-37345506 None:intergenic 25.0%
! GTTTGAAAGATGATGATGAT+GGG + chr1_2:37343536-37343555 None:intergenic 30.0%
! TAACTAGTGCTCATTTGTTA+GGG - chr1_2:37343785-37343804 Msa0069150:three_prime_UTR 30.0%
!! ATTTGTTAGGGTGATGTTTT+GGG - chr1_2:37343797-37343816 Msa0069150:three_prime_UTR 30.0%
GTTTGGTAAAGCAATTGAAT+TGG - chr1_2:37343832-37343851 Msa0069150:three_prime_UTR 30.0%
ACGAAACATACACACTAATT+TGG + chr1_2:37344100-37344119 None:intergenic 30.0%
TAGATATGTTTGAATCACGT+CGG + chr1_2:37344209-37344228 None:intergenic 30.0%
CGATACTTCAATGATAGTAT+TGG - chr1_2:37344273-37344292 Msa0069150:intron 30.0%
AACATGTACGTACTTGATAT+CGG - chr1_2:37344301-37344320 Msa0069150:intron 30.0%
!! TATGTTGCTATTTGTGTGTT+TGG - chr1_2:37344511-37344530 Msa0069150:intron 30.0%
! TATTTGTGTGTTTGGAATCA+TGG - chr1_2:37344519-37344538 Msa0069150:intron 30.0%
AGAAGCTTCATGTTAATATG+TGG - chr1_2:37344561-37344580 Msa0069150:intron 30.0%
GAAGCTTCATGTTAATATGT+GGG - chr1_2:37344562-37344581 Msa0069150:intron 30.0%
AAGCTTCATGTTAATATGTG+GGG - chr1_2:37344563-37344582 Msa0069150:intron 30.0%
!! ACAAACTTGTTAATGTACCT+TGG - chr1_2:37344726-37344745 Msa0069150:intron 30.0%
AATAAGATATGAAATGGCCA+AGG + chr1_2:37344746-37344765 None:intergenic 30.0%
GTCATATTGTACTATGTATG+CGG - chr1_2:37344795-37344814 Msa0069150:three_prime_UTR 30.0%
TCATATTGTACTATGTATGC+GGG - chr1_2:37344796-37344815 Msa0069150:three_prime_UTR 30.0%
TGCTCAAAATCCAAATGATA+CGG - chr1_2:37344988-37345007 Msa0069150:intron 30.0%
!!! TTGTCATGTTCTTTTTTCAC+GGG + chr1_2:37345121-37345140 None:intergenic 30.0%
CTTTCTTGATGAATTTAGGT+TGG - chr1_2:37345158-37345177 Msa0069150:intron 30.0%
TATAACATGTTTAAGGATGG+TGG - chr1_2:37345212-37345231 Msa0069150:intron 30.0%
ATAACATGTTTAAGGATGGT+GGG - chr1_2:37345213-37345232 Msa0069150:intron 30.0%
! TTGCATTTCATAAAGGCATA+AGG + chr1_2:37345337-37345356 None:intergenic 30.0%
AGTAACTGGTATAGTTAGTA+AGG + chr1_2:37345502-37345521 None:intergenic 30.0%
ATCTCTTAAGATGTCAAGAT+TGG + chr1_2:37345525-37345544 None:intergenic 30.0%
TGTGTATACATGCATTTGAT+TGG + chr1_2:37345607-37345626 None:intergenic 30.0%
CAAATGCATGTATACACAAA+TGG - chr1_2:37345609-37345628 Msa0069150:intron 30.0%
! AGCATCATTTTCATTCTATG+CGG + chr1_2:37345857-37345876 None:intergenic 30.0%
TGAATATTAGTTGACTGTAC+TGG - chr1_2:37346203-37346222 Msa0069150:CDS 30.0%
ATATGTACTTCATTGAGTCA+CGG - chr1_2:37346241-37346260 Msa0069150:CDS 30.0%
TTAGATGAGTGAACTACATT+AGG - chr1_2:37346421-37346440 Msa0069150:intron 30.0%
!! GATAATAACTGATAATGGCG+CGG + chr1_2:37343427-37343446 None:intergenic 35.0%
! GGTTTAAGGTTGTGGATAAT+TGG + chr1_2:37343474-37343493 None:intergenic 35.0%
!! AAAGATGATGATGATGGGAA+TGG + chr1_2:37343531-37343550 None:intergenic 35.0%
! GGTTTGAAAGATGATGATGA+TGG + chr1_2:37343537-37343556 None:intergenic 35.0%
CTAACTAGTGCTCATTTGTT+AGG - chr1_2:37343784-37343803 Msa0069150:three_prime_UTR 35.0%
!! CATTTGTTAGGGTGATGTTT+TGG - chr1_2:37343796-37343815 Msa0069150:three_prime_UTR 35.0%
! TTTGTTAGGGTGATGTTTTG+GGG - chr1_2:37343798-37343817 Msa0069150:three_prime_UTR 35.0%
AATACCAGATCTTTGGCAAA+GGG - chr1_2:37343957-37343976 Msa0069150:three_prime_UTR 35.0%
TCTCACTTTACTACTTGGAT+AGG - chr1_2:37343983-37344002 Msa0069150:three_prime_UTR 35.0%
CAGAAAAATAAAAGCAGGTG+AGG + chr1_2:37344017-37344036 None:intergenic 35.0%
!!! CACCTGCTTTTATTTTTCTG+TGG - chr1_2:37344017-37344036 Msa0069150:intron 35.0%
AGCCACAGAAAAATAAAAGC+AGG + chr1_2:37344022-37344041 None:intergenic 35.0%
!!! TGCTTTTATTTTTCTGTGGC+TGG - chr1_2:37344021-37344040 Msa0069150:intron 35.0%
AGTGTGTATGTTTCGTATCA+CGG - chr1_2:37344104-37344123 Msa0069150:intron 35.0%
GTATGTCAGAATCACAATCA+TGG - chr1_2:37344134-37344153 Msa0069150:intron 35.0%
TAAGCTTGTATGTGGTATCA+CGG + chr1_2:37344232-37344251 None:intergenic 35.0%
! GATACTTTCTGAGAACACAT+TGG + chr1_2:37344344-37344363 None:intergenic 35.0%
CATGTTAATATGTGGGGAAA+AGG - chr1_2:37344569-37344588 Msa0069150:intron 35.0%
GTGATCATAACAAGTAGAGT+AGG + chr1_2:37344625-37344644 None:intergenic 35.0%
TTCACACAGAAAACACCATA+TGG + chr1_2:37345020-37345039 None:intergenic 35.0%
TTATATGTTTCCCTCATGAC+AGG + chr1_2:37345197-37345216 None:intergenic 35.0%
TAACATGTTTAAGGATGGTG+GGG - chr1_2:37345214-37345233 Msa0069150:intron 35.0%
ATAATCGCTTTCTCTGCTAT+TGG + chr1_2:37345407-37345426 None:intergenic 35.0%
! TTTTATGCTTCGCTATATGC+TGG - chr1_2:37345427-37345446 Msa0069150:intron 35.0%
TTTATGCTTCGCTATATGCT+GGG - chr1_2:37345428-37345447 Msa0069150:intron 35.0%
AGTTACAAAGCTGAAGAAAG+TGG - chr1_2:37345706-37345725 Msa0069150:intron 35.0%
! GCATCATTTTCATTCTATGC+GGG + chr1_2:37345856-37345875 None:intergenic 35.0%
AAATCAAACCTTTGCCCATA+AGG + chr1_2:37345913-37345932 None:intergenic 35.0%
ATGCAGGTCTGATGATTATA+TGG - chr1_2:37346011-37346030 Msa0069150:CDS 35.0%
TTATATGGCTTCTCTTTCCA+AGG - chr1_2:37346026-37346045 Msa0069150:CDS 35.0%
TTCAGCTGAAGTTCCAATTT+CGG + chr1_2:37346065-37346084 None:intergenic 35.0%
TACGTTACAGTCTAAAGAGA+TGG - chr1_2:37346126-37346145 Msa0069150:intron 35.0%
TATGTACTTCATTGAGTCAC+GGG - chr1_2:37346242-37346261 Msa0069150:CDS 35.0%
AAGTAAAAAAAAGGGCAACC+CGG + chr1_2:37346378-37346397 None:intergenic 35.0%
GATAATTGGCATGGACATAG+TGG + chr1_2:37343460-37343479 None:intergenic 40.0%
AAGGTTGTGGATAATTGGCA+TGG + chr1_2:37343469-37343488 None:intergenic 40.0%
TGATGGGAATGGTGAAGAAA+GGG + chr1_2:37343520-37343539 None:intergenic 40.0%
! ATGATGGGAATGGTGAAGAA+AGG + chr1_2:37343521-37343540 None:intergenic 40.0%
GAAGGATTGGAGCAAAAGAT+GGG + chr1_2:37343561-37343580 None:intergenic 40.0%
TGAAGGATTGGAGCAAAAGA+TGG + chr1_2:37343562-37343581 None:intergenic 40.0%
TCGAGAGAGATTTGAAGGAT+TGG + chr1_2:37343574-37343593 None:intergenic 40.0%
AGTCTTCGAGAGAGATTTGA+AGG + chr1_2:37343579-37343598 None:intergenic 40.0%
AATTGCAAGAAGGGCTTCAT+TGG + chr1_2:37343664-37343683 None:intergenic 40.0%
TGAATTGGATCCTCGTCAAA+AGG - chr1_2:37343847-37343866 Msa0069150:intron 40.0%
GAGTTCCAATACCAGATCTT+TGG - chr1_2:37343950-37343969 Msa0069150:intron 40.0%
CTTTGCCAAAGATCTGGTAT+TGG + chr1_2:37343958-37343977 None:intergenic 40.0%
CAATACCAGATCTTTGGCAA+AGG - chr1_2:37343956-37343975 Msa0069150:three_prime_UTR 40.0%
ATACCAGATCTTTGGCAAAG+GGG - chr1_2:37343958-37343977 Msa0069150:three_prime_UTR 40.0%
!! TTTTTCTGTGGCTGGTTATG+TGG - chr1_2:37344029-37344048 Msa0069150:intron 40.0%
!! TTTTCTGTGGCTGGTTATGT+GGG - chr1_2:37344030-37344049 Msa0069150:intron 40.0%
AGCTTCTACAAAATCACGGT+TGG + chr1_2:37344163-37344182 None:intergenic 40.0%
CAGCTCCTTCTTCAAATCTA+TGG + chr1_2:37344949-37344968 None:intergenic 40.0%
ATGGACTCTTCCGTATCATT+TGG + chr1_2:37345001-37345020 None:intergenic 40.0%
ATGATACGGAAGAGTCCATA+TGG - chr1_2:37345002-37345021 Msa0069150:intron 40.0%
CTGTGTGAAGCTCAACTATA+TGG - chr1_2:37345031-37345050 Msa0069150:intron 40.0%
TGAAGCTCAACTATATGGTG+TGG - chr1_2:37345036-37345055 Msa0069150:intron 40.0%
AGCAAGAAAGCGATATCTTG+AGG - chr1_2:37345063-37345082 Msa0069150:intron 40.0%
! ATTATTGAGCGCACCTTTTC+AGG + chr1_2:37345242-37345261 None:intergenic 40.0%
!! TGGGCTTTATTACGAATCTC+AGG - chr1_2:37345447-37345466 Msa0069150:intron 40.0%
GATGTCAAGATTGGAGTAAC+TGG + chr1_2:37345516-37345535 None:intergenic 40.0%
CTGCTTGCAAATCTCCTTAT+GGG - chr1_2:37345896-37345915 Msa0069150:three_prime_UTR 40.0%
TTCACTGTCTTTGCCGAAAT+TGG - chr1_2:37346049-37346068 Msa0069150:CDS 40.0%
AGCCTCTTGTGTAAAAAGCA+GGG - chr1_2:37346281-37346300 Msa0069150:CDS 40.0%
!!! TACCCTGCTTTTTACACAAG+AGG + chr1_2:37346286-37346305 None:intergenic 40.0%
CTTGTGTAAAAAGCAGGGTA+AGG - chr1_2:37346286-37346305 Msa0069150:CDS 40.0%
CGTACAATACACCAAATGGT+GGG - chr1_2:37346312-37346331 Msa0069150:CDS 40.0%
! TGGACATAGTGGAAGGTAAC+TGG + chr1_2:37343449-37343468 None:intergenic 45.0%
! ATTGGCATGGACATAGTGGA+AGG + chr1_2:37343456-37343475 None:intergenic 45.0%
CTCTTCCTTCCTTCTGTTTC+CGG - chr1_2:37343597-37343616 Msa0069150:three_prime_UTR 45.0%
TCCTCGTCGAATTGCAAGAA+GGG + chr1_2:37343673-37343692 None:intergenic 45.0%
TTCCTCGTCGAATTGCAAGA+AGG + chr1_2:37343674-37343693 None:intergenic 45.0%
AGGAATGTCTCTCTTCAGAC+AGG - chr1_2:37343689-37343708 Msa0069150:three_prime_UTR 45.0%
GGGTCTCTCACTTTACTACT+TGG - chr1_2:37343978-37343997 Msa0069150:three_prime_UTR 45.0%
AAGAAGGAGCTGAGCAGTTT+CGG - chr1_2:37344957-37344976 Msa0069150:intron 45.0%
!! TTTAGGTTGGCAGAGATCCA+AGG - chr1_2:37345171-37345190 Msa0069150:intron 45.0%
! GATTTACCCGTGTAGCTTGT+AGG - chr1_2:37345373-37345392 Msa0069150:intron 45.0%
AATGCACCTACAAGCTACAC+GGG + chr1_2:37345382-37345401 None:intergenic 45.0%
GAATGCACCTACAAGCTACA+CGG + chr1_2:37345383-37345402 None:intergenic 45.0%
TACACAAATGGCGACACTCA+TGG - chr1_2:37345621-37345640 Msa0069150:intron 45.0%
GCTGCTTGCAAATCTCCTTA+TGG - chr1_2:37345895-37345914 Msa0069150:three_prime_UTR 45.0%
GCAAATCTCCTTATGGGCAA+AGG - chr1_2:37345902-37345921 Msa0069150:three_prime_UTR 45.0%
GCACATGCATTCTTTGATGC+AGG - chr1_2:37345995-37346014 Msa0069150:CDS 45.0%
! TTACACAAGAGGCTGTTTCC+AGG + chr1_2:37346275-37346294 None:intergenic 45.0%
CAGCCTCTTGTGTAAAAAGC+AGG - chr1_2:37346280-37346299 Msa0069150:CDS 45.0%
GCTGCGTACAATACACCAAA+TGG - chr1_2:37346308-37346327 Msa0069150:CDS 45.0%
GCGTACAATACACCAAATGG+TGG - chr1_2:37346311-37346330 Msa0069150:CDS 45.0%
!! TGGTGGTGGGTTTAAGGTTG+TGG + chr1_2:37343482-37343501 None:intergenic 50.0%
!! GTAAGGTGGTGGTGGGTTTA+AGG + chr1_2:37343488-37343507 None:intergenic 50.0%
GAATGGTGAAGAAAGGGAGG+GGG + chr1_2:37343514-37343533 None:intergenic 50.0%
GGAATGGTGAAGAAAGGGAG+GGG + chr1_2:37343515-37343534 None:intergenic 50.0%
GGGAATGGTGAAGAAAGGGA+GGG + chr1_2:37343516-37343535 None:intergenic 50.0%
TGGGAATGGTGAAGAAAGGG+AGG + chr1_2:37343517-37343536 None:intergenic 50.0%
GGATTGGAGCAAAAGATGGG+TGG + chr1_2:37343558-37343577 None:intergenic 50.0%
AGATGCCGGAAACAGAAGGA+AGG + chr1_2:37343605-37343624 None:intergenic 50.0%
TTCCTTCTGTTTCCGGCATC+TGG - chr1_2:37343604-37343623 Msa0069150:three_prime_UTR 50.0%
TCCTTCTGTTTCCGGCATCT+GGG - chr1_2:37343605-37343624 Msa0069150:three_prime_UTR 50.0%
!!! TGATGTTTTGGGGTCTGTCG+TGG - chr1_2:37343808-37343827 Msa0069150:three_prime_UTR 50.0%
! ATCCTCGTCAAAAGGCGTGT+AGG - chr1_2:37343855-37343874 Msa0069150:intron 50.0%
! AACCTACACGCCTTTTGACG+AGG + chr1_2:37343860-37343879 None:intergenic 50.0%
AGACCCCTTTGCCAAAGATC+TGG + chr1_2:37343964-37343983 None:intergenic 50.0%
AGATCCAAGGCCTGTCATGA+GGG - chr1_2:37345184-37345203 Msa0069150:intron 50.0%
TCGGCAAAGACAGTGAACCT+TGG + chr1_2:37346046-37346065 None:intergenic 50.0%
AGAAAGGGAGGGGGAGAGTA+AGG + chr1_2:37343505-37343524 None:intergenic 55.0%
TCCCAGATGCCGGAAACAGA+AGG + chr1_2:37343609-37343628 None:intergenic 55.0%
GCCCTTCTTGCAATTCGACG+AGG - chr1_2:37343669-37343688 Msa0069150:three_prime_UTR 55.0%
TTGGGGTCTGTCGTGGAGTT+TGG - chr1_2:37343815-37343834 Msa0069150:three_prime_UTR 55.0%
GAGATCCAAGGCCTGTCATG+AGG - chr1_2:37345183-37345202 Msa0069150:intron 55.0%
GTTTCCCTCATGACAGGCCT+TGG + chr1_2:37345191-37345210 None:intergenic 55.0%
!! GGATGGTGGGGATCCTGAAA+AGG - chr1_2:37345226-37345245 Msa0069150:intron 55.0%
TGAGTCACGGGTTCAAGTCC+TGG - chr1_2:37346254-37346273 Msa0069150:CDS 55.0%
CTAAAGCTCCCGCATACGCA+GGG + chr1_2:37346351-37346370 None:intergenic 55.0%
ACTAAAGCTCCCGCATACGC+AGG + chr1_2:37346352-37346371 None:intergenic 55.0%
! ATGCGGGAGCTTTAGTGCAC+CGG - chr1_2:37346356-37346375 Msa0069150:CDS 55.0%
! GGGGAGAGTAAGGTGGTGGT+GGG + chr1_2:37343495-37343514 None:intergenic 60.0%
AAGGGAGGGGGAGAGTAAGG+TGG + chr1_2:37343502-37343521 None:intergenic 60.0%
! GTTGTTATTGCCGCTGCCGC+CGG + chr1_2:37343640-37343659 None:intergenic 60.0%
! CAAATGGTGGGACCCCTTCC+CGG - chr1_2:37346324-37346343 Msa0069150:CDS 60.0%
! TGCGGGAGCTTTAGTGCACC+GGG - chr1_2:37346357-37346376 Msa0069150:CDS 60.0%
! GGGGGAGAGTAAGGTGGTGG+TGG + chr1_2:37343496-37343515 None:intergenic 65.0%
GGAGGGGGAGAGTAAGGTGG+TGG + chr1_2:37343499-37343518 None:intergenic 65.0%
! GGTGATGGCGTCCCAGATGC+CGG + chr1_2:37343619-37343638 None:intergenic 65.0%
! GGCATCTGGGACGCCATCAC+CGG - chr1_2:37343618-37343637 Msa0069150:three_prime_UTR 65.0%
! ATCTGGGACGCCATCACCGG+CGG - chr1_2:37343621-37343640 Msa0069150:three_prime_UTR 65.0%
CGGGAAGGGGTCCCACCATT+TGG + chr1_2:37346326-37346345 None:intergenic 65.0%
CATACGCAGGGTCCGGGAAG+GGG + chr1_2:37346339-37346358 None:intergenic 65.0%
GCATACGCAGGGTCCGGGAA+GGG + chr1_2:37346340-37346359 None:intergenic 65.0%
CTTCCCGGACCCTGCGTATG+CGG - chr1_2:37346339-37346358 Msa0069150:CDS 65.0%
TTCCCGGACCCTGCGTATGC+GGG - chr1_2:37346340-37346359 Msa0069150:CDS 65.0%
ATTGCCGCTGCCGCCGGTGA+TGG + chr1_2:37343634-37343653 None:intergenic 70.0%
CGCATACGCAGGGTCCGGGA+AGG + chr1_2:37346341-37346360 None:intergenic 70.0%
CTCCCGCATACGCAGGGTCC+GGG + chr1_2:37346345-37346364 None:intergenic 70.0%
GCTCCCGCATACGCAGGGTC+CGG + chr1_2:37346346-37346365 None:intergenic 70.0%
GACGCCATCACCGGCGGCAG+CGG - chr1_2:37343627-37343646 Msa0069150:three_prime_UTR 75.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 37343413 37346464 37343413 ID=Msa0069150;Name=Msa0069150
chr1_2 mRNA 37343413 37346464 37343413 ID=Msa0069150-mRNA-1;Parent=Msa0069150;Name=Msa0069150-mRNA-1;_AED=0.16;_eAED=0.16;_QI=24|1|1|1|0.71|0.62|8|896|115
chr1_2 exon 37343413 37343860 37343413 ID=Msa0069150-mRNA-1:exon:11757;Parent=Msa0069150-mRNA-1
chr1_2 exon 37343954 37344015 37343954 ID=Msa0069150-mRNA-1:exon:11756;Parent=Msa0069150-mRNA-1
chr1_2 exon 37344409 37344489 37344409 ID=Msa0069150-mRNA-1:exon:11755;Parent=Msa0069150-mRNA-1
chr1_2 exon 37344630 37344701 37344630 ID=Msa0069150-mRNA-1:exon:11754;Parent=Msa0069150-mRNA-1
chr1_2 exon 37344793 37344925 37344793 ID=Msa0069150-mRNA-1:exon:11753;Parent=Msa0069150-mRNA-1
chr1_2 exon 37345873 37346071 37345873 ID=Msa0069150-mRNA-1:exon:11752;Parent=Msa0069150-mRNA-1
chr1_2 exon 37346167 37346423 37346167 ID=Msa0069150-mRNA-1:exon:11751;Parent=Msa0069150-mRNA-1
chr1_2 exon 37346449 37346464 37346449 ID=Msa0069150-mRNA-1:exon:11750;Parent=Msa0069150-mRNA-1
chr1_2 five_prime_UTR 37346449 37346464 37346449 ID=Msa0069150-mRNA-1:five_prime_utr;Parent=Msa0069150-mRNA-1
chr1_2 five_prime_UTR 37346416 37346423 37346416 ID=Msa0069150-mRNA-1:five_prime_utr;Parent=Msa0069150-mRNA-1
chr1_2 CDS 37346167 37346415 37346167 ID=Msa0069150-mRNA-1:cds;Parent=Msa0069150-mRNA-1
chr1_2 CDS 37345973 37346071 37345973 ID=Msa0069150-mRNA-1:cds;Parent=Msa0069150-mRNA-1
chr1_2 three_prime_UTR 37345873 37345972 37345873 ID=Msa0069150-mRNA-1:three_prime_utr;Parent=Msa0069150-mRNA-1
chr1_2 three_prime_UTR 37344793 37344925 37344793 ID=Msa0069150-mRNA-1:three_prime_utr;Parent=Msa0069150-mRNA-1
chr1_2 three_prime_UTR 37344630 37344701 37344630 ID=Msa0069150-mRNA-1:three_prime_utr;Parent=Msa0069150-mRNA-1
chr1_2 three_prime_UTR 37344409 37344489 37344409 ID=Msa0069150-mRNA-1:three_prime_utr;Parent=Msa0069150-mRNA-1
chr1_2 three_prime_UTR 37343954 37344015 37343954 ID=Msa0069150-mRNA-1:three_prime_utr;Parent=Msa0069150-mRNA-1
chr1_2 three_prime_UTR 37343413 37343860 37343413 ID=Msa0069150-mRNA-1:three_prime_utr;Parent=Msa0069150-mRNA-1
Gene Sequence

>Msa0069150

ATGTCCATGCCAATTATCCACAACCTTAAACCCACCACCACCTTACTCTCCCCCTCCCTTTCTTCACCATTCCCATCATCATCATCTTTCAAACCACCCATCTTTTGCTCCAATCCTTCAAATCTCTCTCGAAGACTCTTCCTTCCTTCTGTTTCCGGCATCTGGGACGCCATCACCGGCGGCAGCGGCAATAACAACACCAATGAAGCCCTTCTTGCAATTCGACGAGGAATGTCTCTCTTCAGACAGGGTGATGTTTTGGGGTCTGTCGTGGAGTTTGGTAAAGCAATTGAATTGGATCCTCGTCAAAAGGCGTGTAGGTTTATTCGTTTTTCCGAACTTTCGTAA

Protein sequence

>Msa0069150

MSMPIIHNLKPTTTLLSPSLSSPFPSSSSFKPPIFCSNPSNLSRRLFLPSVSGIWDAITGGSGNNNTNEALLAIRRGMSLFRQGDVLGSVVEFGKAIELDPRQKACRFIRFSELS*