AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0315720


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0315720 MtrunA17_Chr2g0287161 98.133 375 7 0 1 375 1 375 0.0 743
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0315720 AT3G21580.1 65.181 359 120 2 17 375 38 391 1.09e-156 446

Find 107 sgRNAs with CRISPR-Local

Find 350 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCACTGGATAATCGAATTT+TGG 0.104689 2_4:+12290941 None:intergenic
ACTTGACTTTGCTTTCAATT+TGG 0.164659 2_4:-12289658 Msa0315720:CDS
TAAATCTCAATGACAGTAAA+AGG 0.188453 2_4:+12288861 None:intergenic
CCTTTCCTCGTAAAGGTTAA+TGG 0.195689 2_4:+12289158 None:intergenic
CTTGACTTTGCTTTCAATTT+GGG 0.197389 2_4:-12289657 Msa0315720:CDS
TATTAATTCAATACAGCTTT+TGG 0.206332 2_4:+12285757 None:intergenic
TATTGATCCACGAGTTAAAT+TGG 0.247372 2_4:-12290711 Msa0315720:intron
TTAGAATTGGATTTCTCTTC+AGG 0.251980 2_4:+12290894 None:intergenic
TTCTTGTCAGAATCATCTTT+TGG 0.254029 2_4:-12286404 Msa0315720:CDS
CTCACCTTCCAAGTATTTCT+TGG 0.254417 2_4:+12289629 None:intergenic
TAACCATGCCACTTTCCTTT+TGG 0.256389 2_4:-12290996 Msa0315720:CDS
GCAGGTTCTTGACATGGTTT+TGG 0.276245 2_4:-12286124 Msa0315720:intron
TCGCATATAATTATGCGATT+TGG 0.287874 2_4:-12289692 Msa0315720:CDS
TTGTGTCTCGTAGGGTAAAT+TGG 0.290091 2_4:-12287608 Msa0315720:CDS
AATCTTCCTATATCTTTAAC+AGG 0.301642 2_4:-12289209 Msa0315720:CDS
GTTAAAGATATAGGAAGATT+TGG 0.313120 2_4:+12289212 None:intergenic
AAAGCTTCAAAAGATGATAA+TGG 0.324391 2_4:-12290866 Msa0315720:CDS
GGAATCCACTTAGACCAATT+TGG 0.327874 2_4:+12290836 None:intergenic
CAAAGTTGAAAACAGATGTT+TGG 0.330048 2_4:-12286049 Msa0315720:three_prime_UTR
TTTCTGTTTATAGGATCAAT+TGG 0.339543 2_4:-12289345 Msa0315720:intron
GAAGCTTTAATTCTTAGAAT+TGG 0.366275 2_4:+12290881 None:intergenic
TTATGTAAACAATGTATGTT+TGG 0.367328 2_4:-12285667 Msa0315720:three_prime_UTR
ATGTGTTAGTGTTGTAAATT+CGG 0.368515 2_4:-12285887 Msa0315720:three_prime_UTR
CTACATAGAATCTTTCTTCA+TGG 0.369788 2_4:-12286092 Msa0315720:three_prime_UTR
AATGCAGATGCTAGTTGTTC+AGG 0.374990 2_4:+12288944 None:intergenic
ATAATTATATGCGACCTTGC+CGG 0.385006 2_4:+12289701 None:intergenic
GCATTGTTATTCATAACATT+AGG 0.385857 2_4:-12289302 Msa0315720:CDS
TCATATGTAATCTCAAAGTT+AGG 0.391690 2_4:-12289182 Msa0315720:CDS
GAATAACCTGTTAAAGATAT+AGG 0.401064 2_4:+12289203 None:intergenic
AAGCTTCAAAAGATGATAAT+GGG 0.403069 2_4:-12290865 Msa0315720:CDS
CTGATAGTAACAACCTTTAC+CGG 0.404938 2_4:+12285816 None:intergenic
GGGAAAAGCAGTGGTGGTGG+TGG 0.408139 2_4:+12290962 None:intergenic
AGTGGCATGGTTACAGTTCA+TGG 0.411818 2_4:+12291006 None:intergenic
TTGAACTTGACAGTTGTCAT+AGG 0.416477 2_4:-12286359 Msa0315720:CDS
TGTGTTAGTGTTGTAAATTC+GGG 0.423460 2_4:-12285886 Msa0315720:three_prime_UTR
TTTAGTTCTGGTTGTTCTAC+CGG 0.429317 2_4:-12289720 Msa0315720:CDS
ATAATGGGCAATCACCAAAT+TGG 0.433105 2_4:-12290850 Msa0315720:CDS
TGCTAGTTGTTCAGGGGTTG+TGG 0.434463 2_4:+12288952 None:intergenic
AAAAGCAGTGGTGGTGGTGG+TGG 0.437237 2_4:+12290965 None:intergenic
AGCCCGGTCACTGCAGGTGG+TGG 0.444595 2_4:+12289236 None:intergenic
GTTATTCATAACATTAGGAC+TGG 0.445479 2_4:-12289297 Msa0315720:CDS
ATCAACTTGAACAATAATTC+AGG 0.453435 2_4:+12285730 None:intergenic
TTCATGGGTGTTGAATTTGA+TGG 0.459035 2_4:+12291022 None:intergenic
ATGCAGATGCTAGTTGTTCA+GGG 0.463241 2_4:+12288945 None:intergenic
CCATTAACCTTTACGAGGAA+AGG 0.463836 2_4:-12289158 Msa0315720:CDS
TTCTGTTTATAGGATCAATT+GGG 0.463911 2_4:-12289344 Msa0315720:intron
CAATTCCCAATGCAATGTTC+CGG 0.469874 2_4:+12287628 None:intergenic
ACTCCACCACCTGCAGTGAC+CGG 0.471747 2_4:-12289239 Msa0315720:CDS
GATAATATTAATGCCGGTAA+AGG 0.473881 2_4:-12285829 Msa0315720:three_prime_UTR
CAGGTCCGGAACATTGCATT+GGG 0.475625 2_4:-12287633 Msa0315720:CDS
TACATAGAATCTTTCTTCAT+GGG 0.476177 2_4:-12286091 Msa0315720:three_prime_UTR
TTTGGAAGCCCGGTCACTGC+AGG 0.479138 2_4:+12289230 None:intergenic
CCACGCAGAGCAAATTTCCC+AGG 0.488862 2_4:-12286838 Msa0315720:intron
AGATAATCCTTTCCTCGTAA+AGG 0.489400 2_4:+12289151 None:intergenic
GAAGAAACAAACTGTCCAAT+GGG 0.493850 2_4:+12290755 None:intergenic
TTCTGGTTGTTCTACCGGCA+AGG 0.499647 2_4:-12289715 Msa0315720:CDS
GCAGGTCCGGAACATTGCAT+TGG 0.501141 2_4:-12287634 Msa0315720:intron
TTTGGGAAAAGCAGTGGTGG+TGG 0.501906 2_4:+12290959 None:intergenic
TTGTCGTATTACACAATTCG+TGG 0.502618 2_4:-12285976 Msa0315720:three_prime_UTR
GACGTCCCCTTTAAAACCTC+TGG 0.504609 2_4:+12286445 None:intergenic
CTCCACCACCTGCAGTGACC+GGG 0.509501 2_4:-12289238 Msa0315720:CDS
AGTGCTACTGCTAGTCCCAT+TGG 0.520144 2_4:-12290770 Msa0315720:CDS
CATGAAGAAAGATTCTATGT+AGG 0.522024 2_4:+12286093 None:intergenic
TTGCTTACCAATTTAACTCG+TGG 0.524511 2_4:+12290704 None:intergenic
TTGGAAACAACTGACTGCTA+TGG 0.525819 2_4:-12287589 Msa0315720:CDS
GGGTTCTACCAAGAAATACT+TGG 0.529184 2_4:-12289637 Msa0315720:CDS
AGTAAGGATAATATTAATGC+CGG 0.536012 2_4:-12285835 Msa0315720:three_prime_UTR
GAGAAATAAACCACACACTC+TGG 0.536461 2_4:-12291051 Msa0315720:five_prime_UTR
CATTGGGAATTGTGTCTCGT+AGG 0.537291 2_4:-12287617 Msa0315720:CDS
AAATCTCAATGACAGTAAAA+GGG 0.541790 2_4:+12288862 None:intergenic
ATGGGTGTTGAATTTGATGG+TGG 0.546678 2_4:+12291025 None:intergenic
TATAGGAAGATTTGGAAGCC+CGG 0.550540 2_4:+12289220 None:intergenic
GCTCTTACCAGTGCTAAAAG+TGG 0.557816 2_4:+12286289 None:intergenic
GGAAGCCCGGTCACTGCAGG+TGG 0.561132 2_4:+12289233 None:intergenic
AACTATGCAGGTTCTTGACA+TGG 0.561395 2_4:-12286130 Msa0315720:intron
ATGCTTCCTCTGAGATACAT+AGG 0.562638 2_4:-12288911 Msa0315720:CDS
ATTGGGAATTGTGTCTCGTA+GGG 0.563749 2_4:-12287616 Msa0315720:CDS
TGTGTAATACGACAATTATG+TGG 0.564581 2_4:+12285984 None:intergenic
TTATTCATAACATTAGGACT+GGG 0.564776 2_4:-12289296 Msa0315720:CDS
ACATTAGGACTGGGTTCAGA+TGG 0.568358 2_4:-12289287 Msa0315720:CDS
ATAGAGTGAAGAAACGTAGT+GGG 0.568949 2_4:+12290731 None:intergenic
ACGAGGAAAGGATTATCTGT+AGG 0.571765 2_4:-12289146 Msa0315720:CDS
GTGGTGGCAATGAAACCAAA+AGG 0.578849 2_4:+12290981 None:intergenic
GGAAGAAACAAACTGTCCAA+TGG 0.579860 2_4:+12290754 None:intergenic
CAATGAAACCAAAAGGAAAG+TGG 0.587121 2_4:+12290988 None:intergenic
TGTCGTATTACACAATTCGT+GGG 0.587306 2_4:-12285975 Msa0315720:three_prime_UTR
AATCACCAAATTGGTCTAAG+TGG 0.592914 2_4:-12290841 Msa0315720:CDS
GTTCTTGACTGAACAAGTGC+AGG 0.597601 2_4:+12289260 None:intergenic
GTGGCATGGTTACAGTTCAT+GGG 0.598022 2_4:+12291007 None:intergenic
AACTAGCATCTGCATTGCGA+TGG 0.598048 2_4:-12288937 Msa0315720:CDS
TGGTCTAAGTGGATTCCCAC+TGG 0.598345 2_4:-12290830 Msa0315720:CDS
TGGGTGTTGAATTTGATGGT+GGG 0.603079 2_4:+12291026 None:intergenic
ATGGTGGGAACCAGAGTGTG+TGG 0.608846 2_4:+12291041 None:intergenic
GTTCAGGGGTTGTGGTTGTG+AGG 0.620370 2_4:+12288960 None:intergenic
AAACCAAAAGGAAAGTGGCA+TGG 0.622480 2_4:+12290993 None:intergenic
ATCAGCAGCAAAAGAGCCAG+TGG 0.624944 2_4:+12290814 None:intergenic
TGCAGATGCTAGTTGTTCAG+GGG 0.627683 2_4:+12288946 None:intergenic
TCTACCAAGAAATACTTGGA+AGG 0.639774 2_4:-12289633 Msa0315720:intron
CCTGGGAAATTTGCTCTGCG+TGG 0.650289 2_4:+12286838 None:intergenic
AATAGAGTGAAGAAACGTAG+TGG 0.659171 2_4:+12290730 None:intergenic
CTGCAGGCTATGATAGCCAG+AGG 0.665465 2_4:-12286461 Msa0315720:intron
TCAGCAGCAAAAGAGCCAGT+GGG 0.670468 2_4:+12290815 None:intergenic
TAGGTCCATTAACCTTTACG+AGG 0.671782 2_4:-12289163 Msa0315720:CDS
TGTATCTTTCTCATTAGACA+AGG 0.672996 2_4:+12286312 None:intergenic
TAGAGTGAAGAAACGTAGTG+GGG 0.692405 2_4:+12290732 None:intergenic
GATACGCCTATGTATCTCAG+AGG 0.705878 2_4:+12288905 None:intergenic
AGAGTGAAGAAACGTAGTGG+GGG 0.708471 2_4:+12290733 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACAATATAATTTATTTATGA+AGG - chr2_4:12287717-12287736 Msa0315720:intron 10.0%
!!! TTTTTGTTTGTATTATTAAT+TGG - chr2_4:12288131-12288150 Msa0315720:intron 10.0%
!!! TTTTATTTTGTATTATTAGT+TGG + chr2_4:12288762-12288781 None:intergenic 10.0%
!!! TATCAATTTTTATGTTTAGT+CGG + chr2_4:12286241-12286260 None:intergenic 15.0%
!! TAAAAAATATAGTGAATAAG+AGG + chr2_4:12287143-12287162 None:intergenic 15.0%
!! TATAAACAGAAATTGAATTA+GGG + chr2_4:12287369-12287388 None:intergenic 15.0%
!!! CTTGAATTTATTTTGATTTT+GGG + chr2_4:12288587-12288606 None:intergenic 15.0%
!!! ACTTGAATTTATTTTGATTT+TGG + chr2_4:12288588-12288607 None:intergenic 15.0%
!! AAGACAAAAAAAAAAATCTT+TGG - chr2_4:12290505-12290524 Msa0315720:intron 15.0%
!! AGACAAAAAAAAAAATCTTT+GGG - chr2_4:12290506-12290525 Msa0315720:intron 15.0%
!!! TTTTTCTTCTATCATTAATT+CGG + chr2_4:12290865-12290884 None:intergenic 15.0%
!! TTTCATGAATTATAAAGCTT+TGG - chr2_4:12286583-12286602 Msa0315720:intron 20.0%
!!! TAATTGCTAACATTTTCTTA+AGG + chr2_4:12286864-12286883 None:intergenic 20.0%
!!! TATATTTGAATAGTTTGTCT+TGG - chr2_4:12286915-12286934 Msa0315720:intron 20.0%
!!! TATTCTCTAGTTTCATAATT+TGG - chr2_4:12287188-12287207 Msa0315720:intron 20.0%
!!! ATTCTCTAGTTTCATAATTT+GGG - chr2_4:12287189-12287208 Msa0315720:intron 20.0%
!! CTATAAACAGAAATTGAATT+AGG + chr2_4:12287370-12287389 None:intergenic 20.0%
!! CTAATTCAATTTCTGTTTAT+AGG - chr2_4:12287368-12287387 Msa0315720:intron 20.0%
!!! CTTTGATTTACAGTTATTTT+AGG - chr2_4:12287657-12287676 Msa0315720:intron 20.0%
!!! TAGTACTAATTTTTTTACCA+AGG + chr2_4:12288353-12288372 None:intergenic 20.0%
!! TGAAAGAACATATAATTAGT+GGG + chr2_4:12288442-12288461 None:intergenic 20.0%
!!! AATATTTTTTTTATGATGCC+TGG + chr2_4:12289204-12289223 None:intergenic 20.0%
!!! TGTGATTTAATTACCAATTT+TGG + chr2_4:12289363-12289382 None:intergenic 20.0%
!!! AAGACACATGTAATTTTTAA+AGG - chr2_4:12289637-12289656 Msa0315720:CDS 20.0%
!!! AAAACTTAATTTGGAATTCT+AGG + chr2_4:12289664-12289683 None:intergenic 20.0%
!! AACAATAACAAAACATAAAG+GGG + chr2_4:12289936-12289955 None:intergenic 20.0%
!! CAACAATAACAAAACATAAA+GGG + chr2_4:12289937-12289956 None:intergenic 20.0%
!! ATATTCACCAAATTTAAACT+GGG + chr2_4:12289994-12290013 None:intergenic 20.0%
!! AATATTCACCAAATTTAAAC+TGG + chr2_4:12289995-12290014 None:intergenic 20.0%
!! GACAAAAAAAAAAATCTTTG+GGG - chr2_4:12290507-12290526 Msa0315720:intron 20.0%
!!! TATTAATTCAATACAGCTTT+TGG + chr2_4:12290968-12290987 None:intergenic 20.0%
!! TTATGTAAACAATGTATGTT+TGG - chr2_4:12291055-12291074 Msa0315720:five_prime_UTR 20.0%
!! AGTGTTAAAAGAGTTTTCTT+TGG + chr2_4:12285805-12285824 None:intergenic 25.0%
!! GAAGCTTTAATTCTTAGAAT+TGG + chr2_4:12285844-12285863 None:intergenic 25.0%
! AAAGCTTCAAAAGATGATAA+TGG - chr2_4:12285856-12285875 Msa0315720:three_prime_UTR 25.0%
! AAGCTTCAAAAGATGATAAT+GGG - chr2_4:12285857-12285876 Msa0315720:three_prime_UTR 25.0%
!!! GGTGTTTTAGTAAGATTTTA+TGG - chr2_4:12286121-12286140 Msa0315720:three_prime_UTR 25.0%
!!! GTTTTAGTAAGATTTTATGG+AGG - chr2_4:12286124-12286143 Msa0315720:intron 25.0%
! TGCAACATAGATCAAATTAT+AGG + chr2_4:12286194-12286213 None:intergenic 25.0%
!!! TATGCTTTTTATTCTAGCTT+GGG - chr2_4:12286269-12286288 Msa0315720:intron 25.0%
! CTCTCTTTGATTACAAATAA+TGG + chr2_4:12286337-12286356 None:intergenic 25.0%
! TACTACATAAGTCATATTGT+AGG + chr2_4:12286380-12286399 None:intergenic 25.0%
!!! CTAACTAGTCTTTGAAATAT+AGG - chr2_4:12286660-12286679 Msa0315720:intron 25.0%
!!! TAGTCTTTGAAATATAGGAT+AGG - chr2_4:12286665-12286684 Msa0315720:intron 25.0%
!!! TATTTTTTAACCGTCATGTT+TGG - chr2_4:12287154-12287173 Msa0315720:intron 25.0%
! TGATAGACTTATTTATGAGA+AGG + chr2_4:12287266-12287285 None:intergenic 25.0%
! TTTCTGTTTATAGGATCAAT+TGG - chr2_4:12287377-12287396 Msa0315720:intron 25.0%
! TTCTGTTTATAGGATCAATT+GGG - chr2_4:12287378-12287397 Msa0315720:intron 25.0%
!! GCATTGTTATTCATAACATT+AGG - chr2_4:12287420-12287439 Msa0315720:intron 25.0%
! TTATTCATAACATTAGGACT+GGG - chr2_4:12287426-12287445 Msa0315720:intron 25.0%
! GTTAAAGATATAGGAAGATT+TGG + chr2_4:12287513-12287532 None:intergenic 25.0%
! AATCTTCCTATATCTTTAAC+AGG - chr2_4:12287513-12287532 Msa0315720:intron 25.0%
! GAATAACCTGTTAAAGATAT+AGG + chr2_4:12287522-12287541 None:intergenic 25.0%
! TCATATGTAATCTCAAAGTT+AGG - chr2_4:12287540-12287559 Msa0315720:intron 25.0%
! TGTAAATCAAAGATAAAAGC+AGG + chr2_4:12287649-12287668 None:intergenic 25.0%
!!! TACAGTTATTTTAGGACTTT+TGG - chr2_4:12287665-12287684 Msa0315720:intron 25.0%
! AAATCTCAATGACAGTAAAA+GGG + chr2_4:12287863-12287882 None:intergenic 25.0%
! TAAATCTCAATGACAGTAAA+AGG + chr2_4:12287864-12287883 None:intergenic 25.0%
! CAATGTTTACTACTATAATC+TGG + chr2_4:12287970-12287989 None:intergenic 25.0%
! CATTGTAACTATAACTTTAG+AGG - chr2_4:12287985-12288004 Msa0315720:intron 25.0%
!! TATAACTTTAGAGGAATGAT+AGG - chr2_4:12287994-12288013 Msa0315720:intron 25.0%
!! ATAACTTTAGAGGAATGATA+GGG - chr2_4:12287995-12288014 Msa0315720:intron 25.0%
!!! ACTTCCAATTTGTTATCTTT+GGG + chr2_4:12288275-12288294 None:intergenic 25.0%
!!! AACTTCCAATTTGTTATCTT+TGG + chr2_4:12288276-12288295 None:intergenic 25.0%
! AAAGAACATATAATTAGTGG+GGG + chr2_4:12288440-12288459 None:intergenic 25.0%
! GAAAGAACATATAATTAGTG+GGG + chr2_4:12288441-12288460 None:intergenic 25.0%
! GTGAAAGAACATATAATTAG+TGG + chr2_4:12288443-12288462 None:intergenic 25.0%
! AAAAGTTATGAAGAATCCTA+TGG + chr2_4:12288910-12288929 None:intergenic 25.0%
! AATTTGTCAAACACTATCAA+AGG - chr2_4:12288940-12288959 Msa0315720:CDS 25.0%
! AAATTTAAGCCTAATTGCTT+CGG + chr2_4:12289022-12289041 None:intergenic 25.0%
! AATGAAACAGATCACTAATT+CGG + chr2_4:12289413-12289432 None:intergenic 25.0%
! GTTTCATTTATCCCAATATT+TGG - chr2_4:12289425-12289444 Msa0315720:intron 25.0%
! ATCCTAAATAAAATCACCAA+AGG - chr2_4:12289518-12289537 Msa0315720:intron 25.0%
!!! CTGCATTCTAAAACTTAATT+TGG + chr2_4:12289673-12289692 None:intergenic 25.0%
!!! CAAATTAAGTTTTAGAATGC+AGG - chr2_4:12289671-12289690 Msa0315720:CDS 25.0%
! GGAAAAATATCATTAGAATG+AGG + chr2_4:12289803-12289822 None:intergenic 25.0%
!!! AAATATTTTTGAAGATGCGA+CGG + chr2_4:12289860-12289879 None:intergenic 25.0%
! ACAATAACAAAACATAAAGG+GGG + chr2_4:12289935-12289954 None:intergenic 25.0%
! GCAACAATAACAAAACATAA+AGG + chr2_4:12289938-12289957 None:intergenic 25.0%
! TATTTATCATAAAATCCTGC+AGG - chr2_4:12290245-12290264 Msa0315720:intron 25.0%
! TACATAGAATCTTTCTTCAT+GGG - chr2_4:12290631-12290650 Msa0315720:intron 25.0%
! ATGTGTTAGTGTTGTAAATT+CGG - chr2_4:12290835-12290854 Msa0315720:CDS 25.0%
! AGTAAGGATAATATTAATGC+CGG - chr2_4:12290887-12290906 Msa0315720:CDS 25.0%
! ATCAACTTGAACAATAATTC+AGG + chr2_4:12290995-12291014 None:intergenic 25.0%
TTAGAATTGGATTTCTCTTC+AGG + chr2_4:12285831-12285850 None:intergenic 30.0%
TATTGATCCACGAGTTAAAT+TGG - chr2_4:12286011-12286030 Msa0315720:three_prime_UTR 30.0%
! TGGTAAGCAAATTTGTTTCA+TGG - chr2_4:12286031-12286050 Msa0315720:three_prime_UTR 30.0%
! GGTAAGCAAATTTGTTTCAT+GGG - chr2_4:12286032-12286051 Msa0315720:three_prime_UTR 30.0%
! ATTCATGCTTGTGCATTTTT+AGG - chr2_4:12286100-12286119 Msa0315720:three_prime_UTR 30.0%
ATTATAGGACACAAGTTCAT+TGG + chr2_4:12286179-12286198 None:intergenic 30.0%
!! CTATGCTTTTTATTCTAGCT+TGG - chr2_4:12286268-12286287 Msa0315720:intron 30.0%
!!! TGTTTTAGTTTTGGGGTTTT+GGG - chr2_4:12286307-12286326 Msa0315720:exon 30.0%
CAATATGACTTATGTAGTAC+TGG - chr2_4:12286381-12286400 Msa0315720:CDS 30.0%
GGAAAATTCTATTATCCCTT+TGG + chr2_4:12286751-12286770 None:intergenic 30.0%
TTGTTGTGGATACATGTTAA+AGG - chr2_4:12286795-12286814 Msa0315720:intron 30.0%
! AATAGTTTGTCTTGGCTTAT+TGG - chr2_4:12286923-12286942 Msa0315720:intron 30.0%
! TTACATGTGTTTCTGTTCTT+TGG - chr2_4:12286947-12286966 Msa0315720:intron 30.0%
! TCTTTGGTAATCAATTAGTG+TGG - chr2_4:12286963-12286982 Msa0315720:intron 30.0%
!! ATCAATTAGTGTGGTTTTAC+AGG - chr2_4:12286972-12286991 Msa0315720:intron 30.0%
TCGCATATAATTATGCGATT+TGG - chr2_4:12287030-12287049 Msa0315720:intron 30.0%
ACTTGACTTTGCTTTCAATT+TGG - chr2_4:12287064-12287083 Msa0315720:intron 30.0%
CTTGACTTTGCTTTCAATTT+GGG - chr2_4:12287065-12287084 Msa0315720:intron 30.0%
GAATAAGAGGATATAAGCAA+TGG + chr2_4:12287130-12287149 None:intergenic 30.0%
GAAAAAACAACCAAACATGA+CGG + chr2_4:12287167-12287186 None:intergenic 30.0%
GTTATTCATAACATTAGGAC+TGG - chr2_4:12287425-12287444 Msa0315720:intron 30.0%
!!! TATCAGTCTAGTTTTTGATG+AGG - chr2_4:12287882-12287901 Msa0315720:intron 30.0%
TTTCACATTACTATGTTGAG+TGG - chr2_4:12287921-12287940 Msa0315720:intron 30.0%
TTCACATTACTATGTTGAGT+GGG - chr2_4:12287922-12287941 Msa0315720:intron 30.0%
TGTCATTATTAGATTGGAGT+GGG + chr2_4:12288046-12288065 None:intergenic 30.0%
! GTGATGTGTCATTATTAGAT+TGG + chr2_4:12288052-12288071 None:intergenic 30.0%
CAAAATAGATGTTTGACAGT+GGG + chr2_4:12288249-12288268 None:intergenic 30.0%
ACAAAATAGATGTTTGACAG+TGG + chr2_4:12288250-12288269 None:intergenic 30.0%
GTTTCCCAAAGATAACAAAT+TGG - chr2_4:12288268-12288287 Msa0315720:intron 30.0%
TGATGAATCACTATGTGAAT+CGG + chr2_4:12288403-12288422 None:intergenic 30.0%
ATTCACATAGTGATTCATCA+GGG - chr2_4:12288403-12288422 Msa0315720:intron 30.0%
TCATGAGAATGTTGATATGT+CGG - chr2_4:12288642-12288661 Msa0315720:intron 30.0%
!! TATCCTGATTATTTTGTTGC+AGG - chr2_4:12289070-12289089 Msa0315720:intron 30.0%
! ACTGTGCATTGATCTTATTT+AGG - chr2_4:12289294-12289313 Msa0315720:CDS 30.0%
ATTGTGTAAGCATCCAAAAT+TGG - chr2_4:12289347-12289366 Msa0315720:intron 30.0%
! TTATCCCAATATTTGGAGTT+TGG - chr2_4:12289432-12289451 Msa0315720:intron 30.0%
!! GATTTTATTTAGGATCAGAC+TGG + chr2_4:12289513-12289532 None:intergenic 30.0%
!! TGCCTTTGGTGATTTTATTT+AGG + chr2_4:12289523-12289542 None:intergenic 30.0%
ACAAATAACTTTCATGCCTT+TGG + chr2_4:12289537-12289556 None:intergenic 30.0%
AAACTGTGGAGTCATATAAA+GGG + chr2_4:12289824-12289843 None:intergenic 30.0%
AAAACTGTGGAGTCATATAA+AGG + chr2_4:12289825-12289844 None:intergenic 30.0%
GAAGTAGTTAAAGAAAACTG+TGG + chr2_4:12289838-12289857 None:intergenic 30.0%
CAACACAAACAAATTTCTGA+TGG + chr2_4:12290032-12290051 None:intergenic 30.0%
! TTCTTGTCAGAATCATCTTT+TGG - chr2_4:12290318-12290337 Msa0315720:intron 30.0%
! TCTTGTCAGAATCATCTTTT+GGG - chr2_4:12290319-12290338 Msa0315720:intron 30.0%
TGTATCTTTCTCATTAGACA+AGG + chr2_4:12290413-12290432 None:intergenic 30.0%
! AAAAAAAATCTTTGGGGACA+AGG - chr2_4:12290513-12290532 Msa0315720:intron 30.0%
AACAATGTAGATAACTATGC+AGG - chr2_4:12290580-12290599 Msa0315720:intron 30.0%
CATGAAGAAAGATTCTATGT+AGG + chr2_4:12290632-12290651 None:intergenic 30.0%
CTACATAGAATCTTTCTTCA+TGG - chr2_4:12290630-12290649 Msa0315720:intron 30.0%
CAAAGTTGAAAACAGATGTT+TGG - chr2_4:12290673-12290692 Msa0315720:intron 30.0%
TGTGTAATACGACAATTATG+TGG + chr2_4:12290741-12290760 None:intergenic 30.0%
TGTGTTAGTGTTGTAAATTC+GGG - chr2_4:12290836-12290855 Msa0315720:CDS 30.0%
TGATAGAAGAAAAAGCAGTA+AGG - chr2_4:12290871-12290890 Msa0315720:CDS 30.0%
GATAATATTAATGCCGGTAA+AGG - chr2_4:12290893-12290912 Msa0315720:CDS 30.0%
!! TTCATGGGTGTTGAATTTGA+TGG + chr2_4:12285703-12285722 None:intergenic 35.0%
CAATGAAACCAAAAGGAAAG+TGG + chr2_4:12285737-12285756 None:intergenic 35.0%
! GCACTGGATAATCGAATTTT+GGG + chr2_4:12285783-12285802 None:intergenic 35.0%
! AAAAGAGTTTTCTTTGGCAC+TGG + chr2_4:12285799-12285818 None:intergenic 35.0%
!! ATAATGGGCAATCACCAAAT+TGG - chr2_4:12285872-12285891 Msa0315720:three_prime_UTR 35.0%
! AATCACCAAATTGGTCTAAG+TGG - chr2_4:12285881-12285900 Msa0315720:three_prime_UTR 35.0%
GAAGAAACAAACTGTCCAAT+GGG + chr2_4:12285970-12285989 None:intergenic 35.0%
ATAGAGTGAAGAAACGTAGT+GGG + chr2_4:12285994-12286013 None:intergenic 35.0%
AATAGAGTGAAGAAACGTAG+TGG + chr2_4:12285995-12286014 None:intergenic 35.0%
TTGCTTACCAATTTAACTCG+TGG + chr2_4:12286021-12286040 None:intergenic 35.0%
!!! TATGGAGGAGTGTTTTAGTT+TGG - chr2_4:12286139-12286158 Msa0315720:intron 35.0%
!!! ATGGAGGAGTGTTTTAGTTT+GGG - chr2_4:12286140-12286159 Msa0315720:intron 35.0%
!!! GTGTTTTAGTTTGGGAGTTT+TGG - chr2_4:12286148-12286167 Msa0315720:intron 35.0%
!!! ATGGAGGACTGTTTTAGTTT+TGG - chr2_4:12286298-12286317 Msa0315720:three_prime_UTR 35.0%
!!! TGGAGGACTGTTTTAGTTTT+GGG - chr2_4:12286299-12286318 Msa0315720:three_prime_UTR 35.0%
!!! CTGTTTTAGTTTTGGGGTTT+TGG - chr2_4:12286306-12286325 Msa0315720:exon 35.0%
! TTGCTGGATCACATTTTACA+AGG + chr2_4:12286640-12286659 None:intergenic 35.0%
! TTCAAAGACTAGTTAGTTGC+TGG + chr2_4:12286656-12286675 None:intergenic 35.0%
TTTGGCGAACATGAAATATG+TGG + chr2_4:12286733-12286752 None:intergenic 35.0%
ACATATTTCATGTTCGCCAA+AGG - chr2_4:12286732-12286751 Msa0315720:intron 35.0%
CATATTTCATGTTCGCCAAA+GGG - chr2_4:12286733-12286752 Msa0315720:intron 35.0%
TGGATACATGTTAAAGGTGA+AGG - chr2_4:12286801-12286820 Msa0315720:intron 35.0%
GGATACATGTTAAAGGTGAA+GGG - chr2_4:12286802-12286821 Msa0315720:intron 35.0%
TAGTGAAACAATTGTGTAGC+TGG - chr2_4:12286892-12286911 Msa0315720:intron 35.0%
!! TTAGTGTGGTTTTACAGGTA+TGG - chr2_4:12286977-12286996 Msa0315720:intron 35.0%
!! TTTAGTTCTGGTTGTTCTAC+CGG - chr2_4:12287002-12287021 Msa0315720:intron 35.0%
ATAATTATATGCGACCTTGC+CGG + chr2_4:12287024-12287043 None:intergenic 35.0%
TCTACCAAGAAATACTTGGA+AGG - chr2_4:12287089-12287108 Msa0315720:intron 35.0%
TCTATCAAGTCAAAACTGCT+TGG - chr2_4:12287279-12287298 Msa0315720:intron 35.0%
ATTTGTAAGCAAATAGCCAG+TGG + chr2_4:12287305-12287324 None:intergenic 35.0%
AGATAATCCTTTCCTCGTAA+AGG + chr2_4:12287574-12287593 None:intergenic 35.0%
! GTGTCATTATTAGATTGGAG+TGG + chr2_4:12288047-12288066 None:intergenic 35.0%
!! TTTTGGAGAATTGGAGAAGA+GGG + chr2_4:12288178-12288197 None:intergenic 35.0%
!!! TTGATGCAGTTTTGGAGAAT+TGG + chr2_4:12288187-12288206 None:intergenic 35.0%
GATTCACATAGTGATTCATC+AGG - chr2_4:12288402-12288421 Msa0315720:intron 35.0%
AACATATAATTAGTGGGGGT+TGG + chr2_4:12288436-12288455 None:intergenic 35.0%
! AATGGGTCATGTGTCATTAT+TGG - chr2_4:12288835-12288854 Msa0315720:intron 35.0%
! GTCATGTGTCATTATTGGAT+TGG - chr2_4:12288840-12288859 Msa0315720:intron 35.0%
! TGTCATTATTGGATTGGACT+TGG - chr2_4:12288846-12288865 Msa0315720:CDS 35.0%
CTAATTGCTTCGGTTCAATT+GGG + chr2_4:12289012-12289031 None:intergenic 35.0%
!! TGATTATTTTGTTGCAGGTC+CGG - chr2_4:12289075-12289094 Msa0315720:intron 35.0%
GGAACACAGATAAGAAGTTT+AGG + chr2_4:12289236-12289255 None:intergenic 35.0%
! TTTTGGATGCTTACACAATG+TGG + chr2_4:12289346-12289365 None:intergenic 35.0%
CAGTCCAAACTCCAAATATT+GGG + chr2_4:12289439-12289458 None:intergenic 35.0%
CATGTGTCTTTAAGTAGTAC+AGG + chr2_4:12289627-12289646 None:intergenic 35.0%
ATGTTATGTGGTAGGTAGTT+TGG - chr2_4:12289703-12289722 Msa0315720:CDS 35.0%
TTCCCAACCCAGTTTAAATT+TGG - chr2_4:12289984-12290003 Msa0315720:intron 35.0%
CACCAAATTTAAACTGGGTT+GGG + chr2_4:12289989-12290008 None:intergenic 35.0%
TCACCAAATTTAAACTGGGT+TGG + chr2_4:12289990-12290009 None:intergenic 35.0%
!! TTTCTAGAACACAGCATTGT+TGG + chr2_4:12290086-12290105 None:intergenic 35.0%
AAATGTCAGTTTGTGTTCAG+AGG + chr2_4:12290163-12290182 None:intergenic 35.0%
! CTGAACACAAACTGACATTT+TGG - chr2_4:12290163-12290182 Msa0315720:intron 35.0%
!!! TTTTGGAGCTAATATGCTGT+TGG - chr2_4:12290180-12290199 Msa0315720:intron 35.0%
!! ATGATAGCCAGAGGTTTTAA+AGG - chr2_4:12290270-12290289 Msa0315720:intron 35.0%
!!! TGATAGCCAGAGGTTTTAAA+GGG - chr2_4:12290271-12290290 Msa0315720:intron 35.0%
TTGAACTTGACAGTTGTCAT+AGG - chr2_4:12290363-12290382 Msa0315720:intron 35.0%
! CAAATAGCCTTTAGAGAAGA+AGG + chr2_4:12290543-12290562 None:intergenic 35.0%
TCTAAAGGCTATTTGTCGTT+TGG - chr2_4:12290548-12290567 Msa0315720:intron 35.0%
TTGTCGTATTACACAATTCG+TGG - chr2_4:12290746-12290765 Msa0315720:CDS 35.0%
TGTCGTATTACACAATTCGT+GGG - chr2_4:12290747-12290766 Msa0315720:CDS 35.0%
TGCTAGATCAAAAAAGGATG+TGG + chr2_4:12290798-12290817 None:intergenic 35.0%
CACTTGTGCTAGATCAAAAA+AGG + chr2_4:12290804-12290823 None:intergenic 35.0%
!!! CTTTTTTGATCTAGCACAAG+TGG - chr2_4:12290802-12290821 Msa0315720:CDS 35.0%
CTGATAGTAACAACCTTTAC+CGG + chr2_4:12290909-12290928 None:intergenic 35.0%
GAGAAATAAACCACACACTC+TGG - chr2_4:12285671-12285690 Msa0315720:three_prime_UTR 40.0%
!! TGGGTGTTGAATTTGATGGT+GGG + chr2_4:12285699-12285718 None:intergenic 40.0%
!! ATGGGTGTTGAATTTGATGG+TGG + chr2_4:12285700-12285719 None:intergenic 40.0%
!!! TAACCATGCCACTTTCCTTT+TGG - chr2_4:12285726-12285745 Msa0315720:three_prime_UTR 40.0%
AAACCAAAAGGAAAGTGGCA+TGG + chr2_4:12285732-12285751 None:intergenic 40.0%
!! AATTTTGGGAAAAGCAGTGG+TGG + chr2_4:12285769-12285788 None:intergenic 40.0%
!! TCGAATTTTGGGAAAAGCAG+TGG + chr2_4:12285772-12285791 None:intergenic 40.0%
!! GGCACTGGATAATCGAATTT+TGG + chr2_4:12285784-12285803 None:intergenic 40.0%
GGAATCCACTTAGACCAATT+TGG + chr2_4:12285889-12285908 None:intergenic 40.0%
GGAAGAAACAAACTGTCCAA+TGG + chr2_4:12285971-12285990 None:intergenic 40.0%
TAGAGTGAAGAAACGTAGTG+GGG + chr2_4:12285993-12286012 None:intergenic 40.0%
!! ATTCTAGCTTGGGCATTGTA+TGG - chr2_4:12286279-12286298 Msa0315720:intron 40.0%
!!! GGAGGACTGTTTTAGTTTTG+GGG - chr2_4:12286300-12286319 Msa0315720:three_prime_UTR 40.0%
TATCTGGTGTTTGACACATG+TGG - chr2_4:12286429-12286448 Msa0315720:CDS 40.0%
AGCTATCACTCAAACAGTCA+TGG + chr2_4:12286772-12286791 None:intergenic 40.0%
GAGTGATAGCTAAGTTGTTG+TGG - chr2_4:12286781-12286800 Msa0315720:intron 40.0%
TGTTAAAGGTGAAGGGCTTA+AGG - chr2_4:12286809-12286828 Msa0315720:intron 40.0%
!!! ACAGGTATGGCTTTTAGTTC+TGG - chr2_4:12286990-12287009 Msa0315720:intron 40.0%
GGGTTCTACCAAGAAATACT+TGG - chr2_4:12287085-12287104 Msa0315720:intron 40.0%
CTCACCTTCCAAGTATTTCT+TGG + chr2_4:12287096-12287115 None:intergenic 40.0%
!! GGGTCGTGTTTATTTTCTGT+CGG - chr2_4:12287398-12287417 Msa0315720:intron 40.0%
TATAGGAAGATTTGGAAGCC+CGG + chr2_4:12287505-12287524 None:intergenic 40.0%
TAGGTCCATTAACCTTTACG+AGG - chr2_4:12287559-12287578 Msa0315720:intron 40.0%
CCTTTCCTCGTAAAGGTTAA+TGG + chr2_4:12287567-12287586 None:intergenic 40.0%
CCATTAACCTTTACGAGGAA+AGG - chr2_4:12287564-12287583 Msa0315720:intron 40.0%
ACGAGGAAAGGATTATCTGT+AGG - chr2_4:12287576-12287595 Msa0315720:intron 40.0%
ATGCAGATGCTAGTTGTTCA+GGG + chr2_4:12287780-12287799 None:intergenic 40.0%
AATGCAGATGCTAGTTGTTC+AGG + chr2_4:12287781-12287800 None:intergenic 40.0%
!! ATGCTTCCTCTGAGATACAT+AGG - chr2_4:12287811-12287830 Msa0315720:intron 40.0%
! ATCCGATTCGCAGGTAAAAT+GGG + chr2_4:12288074-12288093 None:intergenic 40.0%
!!! GTTTTGGAGAATTGGAGAAG+AGG + chr2_4:12288179-12288198 None:intergenic 40.0%
! CAGAGACATTGATGCAGTTT+TGG + chr2_4:12288195-12288214 None:intergenic 40.0%
GATTTGAAGACAGGTTCACA+CGG + chr2_4:12288324-12288343 None:intergenic 40.0%
! AGGATGTTCGATTTGAAGAC+AGG + chr2_4:12288333-12288352 None:intergenic 40.0%
GTCTTCAAATCGAACATCCT+TGG - chr2_4:12288333-12288352 Msa0315720:intron 40.0%
ATCACTATGTGAATCGGAAG+TGG + chr2_4:12288397-12288416 None:intergenic 40.0%
! AAGAGCATGTGAATCGGAAT+TGG + chr2_4:12288465-12288484 None:intergenic 40.0%
! TAGTCGAAGAGCATGTGAAT+CGG + chr2_4:12288471-12288490 None:intergenic 40.0%
TCACATGCTCTTCGACTAAT+CGG - chr2_4:12288473-12288492 Msa0315720:intron 40.0%
ATCAACATTCTCATGAGCTG+CGG + chr2_4:12288638-12288657 None:intergenic 40.0%
! CTCTTTGTAACTTGCACATC+CGG - chr2_4:12288801-12288820 Msa0315720:intron 40.0%
! ATCCGGTTTGCAGGTAAAAT+GGG - chr2_4:12288818-12288837 Msa0315720:intron 40.0%
!! TGTGTCTAAAGGAGTGTTAG+AGG - chr2_4:12288871-12288890 Msa0315720:CDS 40.0%
!! GTGTCTAAAGGAGTGTTAGA+GGG - chr2_4:12288872-12288891 Msa0315720:CDS 40.0%
ATGAAGAATCCTATGGTCAG+AGG + chr2_4:12288903-12288922 None:intergenic 40.0%
CCTAATTGCTTCGGTTCAAT+TGG + chr2_4:12289013-12289032 None:intergenic 40.0%
CCAATTGAACCGAAGCAATT+AGG - chr2_4:12289010-12289029 Msa0315720:intron 40.0%
GGACCTGCAACAAAATAATC+AGG + chr2_4:12289076-12289095 None:intergenic 40.0%
CAATTCCCAATGCAATGTTC+CGG + chr2_4:12289097-12289116 None:intergenic 40.0%
ATTGGGAATTGTGTCTCGTA+GGG - chr2_4:12289106-12289125 Msa0315720:intron 40.0%
TTGTGTCTCGTAGGGTAAAT+TGG - chr2_4:12289114-12289133 Msa0315720:intron 40.0%
TTGGAAACAACTGACTGCTA+TGG - chr2_4:12289133-12289152 Msa0315720:CDS 40.0%
! TAGCTTTTCCACTTGTATCC+AGG - chr2_4:12289183-12289202 Msa0315720:CDS 40.0%
TTATGATGCCTGGATACAAG+TGG + chr2_4:12289194-12289213 None:intergenic 40.0%
TATCTGTGTTCCAACGAACT+AGG - chr2_4:12289244-12289263 Msa0315720:CDS 40.0%
CAACGAACTAGGTAAGTGAT+GGG - chr2_4:12289255-12289274 Msa0315720:CDS 40.0%
CCAGTCCAAACTCCAAATAT+TGG + chr2_4:12289440-12289459 None:intergenic 40.0%
! CCAATATTTGGAGTTTGGAC+TGG - chr2_4:12289437-12289456 Msa0315720:intron 40.0%
AGGTTTGTCGTGATGTTATG+TGG - chr2_4:12289691-12289710 Msa0315720:CDS 40.0%
TTGTCGTGATGTTATGTGGT+AGG - chr2_4:12289695-12289714 Msa0315720:CDS 40.0%
CAAATTTCCCAGGTTTGTCT+TGG - chr2_4:12289894-12289913 Msa0315720:intron 40.0%
CATACATCCAAGACAAACCT+GGG + chr2_4:12289904-12289923 None:intergenic 40.0%
TCATACATCCAAGACAAACC+TGG + chr2_4:12289905-12289924 None:intergenic 40.0%
TGTCACAGAAAGTGAGTGTA+TGG + chr2_4:12290136-12290155 None:intergenic 40.0%
ACACTCACTTTCTGTGACAT+AGG - chr2_4:12290137-12290156 Msa0315720:intron 40.0%
!!! GATAGCCAGAGGTTTTAAAG+GGG - chr2_4:12290272-12290291 Msa0315720:intron 40.0%
!! GTCAGAATCATCTTTTGGGA+TGG - chr2_4:12290323-12290342 Msa0315720:intron 40.0%
!! AGATACACCACTTTTAGCAC+TGG - chr2_4:12290426-12290445 Msa0315720:intron 40.0%
AGGTGTTCCTTCTTCTCTAA+AGG - chr2_4:12290533-12290552 Msa0315720:intron 40.0%
AACTATGCAGGTTCTTGACA+TGG - chr2_4:12290592-12290611 Msa0315720:intron 40.0%
GTGGCATGGTTACAGTTCAT+GGG + chr2_4:12285718-12285737 None:intergenic 45.0%
AGTGGCATGGTTACAGTTCA+TGG + chr2_4:12285719-12285738 None:intergenic 45.0%
GTGGTGGCAATGAAACCAAA+AGG + chr2_4:12285744-12285763 None:intergenic 45.0%
! TGGCTCTTTTGCTGCTGATA+AGG - chr2_4:12285912-12285931 Msa0315720:three_prime_UTR 45.0%
AGAGTGAAGAAACGTAGTGG+GGG + chr2_4:12285992-12286011 None:intergenic 45.0%
CCAGATAGACTCTCAAGTCT+CGG + chr2_4:12286416-12286435 None:intergenic 45.0%
!! CTGCTGCTGACTGTAGTTTT+TGG - chr2_4:12286610-12286629 Msa0315720:intron 45.0%
!! CTGCTGACTGTAGTTTTTGG+TGG - chr2_4:12286613-12286632 Msa0315720:intron 45.0%
TAGGATAGGATCATGTGTGC+TGG - chr2_4:12286679-12286698 Msa0315720:intron 45.0%
ACATTAGGACTGGGTTCAGA+TGG - chr2_4:12287435-12287454 Msa0315720:intron 45.0%
GTTCTTGACTGAACAAGTGC+AGG + chr2_4:12287465-12287484 None:intergenic 45.0%
TGCAGATGCTAGTTGTTCAG+GGG + chr2_4:12287779-12287798 None:intergenic 45.0%
AACTAGCATCTGCATTGCGA+TGG - chr2_4:12287785-12287804 Msa0315720:intron 45.0%
GATACGCCTATGTATCTCAG+AGG + chr2_4:12287820-12287839 None:intergenic 45.0%
! CACCCATTTTACCTGCGAAT+CGG - chr2_4:12288069-12288088 Msa0315720:intron 45.0%
! CATCCGATTCGCAGGTAAAA+TGG + chr2_4:12288075-12288094 None:intergenic 45.0%
TGTGAATCGGAAGTGGTCTT+TGG + chr2_4:12288390-12288409 None:intergenic 45.0%
AAGAGAGGTTGCGATTGAGA+CGG - chr2_4:12288694-12288713 Msa0315720:intron 45.0%
! CATCCGGTTTGCAGGTAAAA+TGG - chr2_4:12288817-12288836 Msa0315720:intron 45.0%
! GACCCATTTTACCTGCAAAC+CGG + chr2_4:12288823-12288842 None:intergenic 45.0%
TGGACTTGGAGTGTGTCTAA+AGG - chr2_4:12288860-12288879 Msa0315720:CDS 45.0%
CATTGGGAATTGTGTCTCGT+AGG - chr2_4:12289105-12289124 Msa0315720:intron 45.0%
CCATCACTTACCTAGTTCGT+TGG + chr2_4:12289257-12289276 None:intergenic 45.0%
CCAACGAACTAGGTAAGTGA+TGG - chr2_4:12289254-12289273 Msa0315720:CDS 45.0%
GCTCTTACCAGTGCTAAAAG+TGG + chr2_4:12290436-12290455 None:intergenic 45.0%
! GCAGGTTCTTGACATGGTTT+TGG - chr2_4:12290598-12290617 Msa0315720:intron 45.0%
TTTGGGAAAAGCAGTGGTGG+TGG + chr2_4:12285766-12285785 None:intergenic 50.0%
! TGGTCTAAGTGGATTCCCAC+TGG - chr2_4:12285892-12285911 Msa0315720:three_prime_UTR 50.0%
TCAGCAGCAAAAGAGCCAGT+GGG + chr2_4:12285910-12285929 None:intergenic 50.0%
ATCAGCAGCAAAAGAGCCAG+TGG + chr2_4:12285911-12285930 None:intergenic 50.0%
! AGTGCTACTGCTAGTCCCAT+TGG - chr2_4:12285952-12285971 Msa0315720:three_prime_UTR 50.0%
! CTAGCTTGGGCATTGTATGG+AGG - chr2_4:12286282-12286301 Msa0315720:intron 50.0%
CCGAGACTTGAGAGTCTATC+TGG - chr2_4:12286413-12286432 Msa0315720:CDS 50.0%
ACACGTGTCAGTGTCGTGTT+TGG - chr2_4:12286498-12286517 Msa0315720:intron 50.0%
!! TCAGTGTCGTGTTTGGTGTC+TGG - chr2_4:12286505-12286524 Msa0315720:intron 50.0%
!! CAGTGTCGTGTTTGGTGTCT+GGG - chr2_4:12286506-12286525 Msa0315720:intron 50.0%
! TTCTGGTTGTTCTACCGGCA+AGG - chr2_4:12287007-12287026 Msa0315720:intron 50.0%
AGTCAAAACTGCTTGGCCAC+TGG - chr2_4:12287286-12287305 Msa0315720:intron 50.0%
TGCTAGTTGTTCAGGGGTTG+TGG + chr2_4:12287773-12287792 None:intergenic 50.0%
! TACTTGCACATCCGATTCGC+AGG + chr2_4:12288083-12288102 None:intergenic 50.0%
AGGTTCACACGGCAGATTTG+GGG + chr2_4:12288313-12288332 None:intergenic 50.0%
CAGGTTCACACGGCAGATTT+GGG + chr2_4:12288314-12288333 None:intergenic 50.0%
ACAGGTTCACACGGCAGATT+TGG + chr2_4:12288315-12288334 None:intergenic 50.0%
AGAGCACATGCTAGAGACAG+CGG - chr2_4:12288669-12288688 Msa0315720:intron 50.0%
GTCTCAATCGCAACCTCTCT+TGG + chr2_4:12288695-12288714 None:intergenic 50.0%
TCATCTCAACCTCCCCTTGA+TGG + chr2_4:12288729-12288748 None:intergenic 50.0%
! AACTTGCACATCCGGTTTGC+AGG - chr2_4:12288809-12288828 Msa0315720:intron 50.0%
CAGGTCCGGAACATTGCATT+GGG - chr2_4:12289089-12289108 Msa0315720:intron 50.0%
!! GACGTCCCCTTTAAAACCTC+TGG + chr2_4:12290280-12290299 None:intergenic 50.0%
! ATGGTGGGAACCAGAGTGTG+TGG + chr2_4:12285684-12285703 None:intergenic 55.0%
!! AAAAGCAGTGGTGGTGGTGG+TGG + chr2_4:12285760-12285779 None:intergenic 55.0%
!! GTCGTGTTTGGTGTCTGGGT+CGG - chr2_4:12286510-12286529 Msa0315720:intron 55.0%
GTTCAGGGGTTGTGGTTGTG+AGG + chr2_4:12287765-12287784 None:intergenic 55.0%
GGTTCACACGGCAGATTTGG+GGG + chr2_4:12288312-12288331 None:intergenic 55.0%
TGTCTCCATCGCTCCATCGA+CGG + chr2_4:12288544-12288563 None:intergenic 55.0%
GATGGAGCGATGGAGACAAC+AGG - chr2_4:12288546-12288565 Msa0315720:intron 55.0%
GAGGTTGCGATTGAGACGGT+CGG - chr2_4:12288698-12288717 Msa0315720:intron 55.0%
AGGGTGTGACCTCTGACCAT+AGG - chr2_4:12288891-12288910 Msa0315720:CDS 55.0%
GCAGGTCCGGAACATTGCAT+TGG - chr2_4:12289088-12289107 Msa0315720:intron 55.0%
! CCTGGGAAATTTGCTCTGCG+TGG + chr2_4:12289887-12289906 None:intergenic 55.0%
CCACGCAGAGCAAATTTCCC+AGG - chr2_4:12289884-12289903 Msa0315720:intron 55.0%
CTCTGGCTATCATAGCCTGC+AGG + chr2_4:12290263-12290282 None:intergenic 55.0%
CTGCAGGCTATGATAGCCAG+AGG - chr2_4:12290261-12290280 Msa0315720:intron 55.0%
!! GGGAAAAGCAGTGGTGGTGG+TGG + chr2_4:12285763-12285782 None:intergenic 60.0%
ACTCCACCACCTGCAGTGAC+CGG - chr2_4:12287483-12287502 Msa0315720:intron 60.0%
TTTGGAAGCCCGGTCACTGC+AGG + chr2_4:12287495-12287514 None:intergenic 60.0%
ACAAGCCGTCGATGGAGCGA+TGG - chr2_4:12288536-12288555 Msa0315720:intron 60.0%
CTAGAGACAGCGGCCAAGAG+AGG - chr2_4:12288679-12288698 Msa0315720:intron 60.0%
GTTGCGATTGAGACGGTCGG+CGG - chr2_4:12288701-12288720 Msa0315720:intron 60.0%
CTCCACCACCTGCAGTGACC+GGG - chr2_4:12287484-12287503 Msa0315720:intron 65.0%
TCAGCGCGACAAGCCGTCGA+TGG - chr2_4:12288528-12288547 Msa0315720:intron 65.0%
ACGGTCGGCGGCACCATCAA+GGG - chr2_4:12288713-12288732 Msa0315720:intron 65.0%
AGCCCGGTCACTGCAGGTGG+TGG + chr2_4:12287489-12287508 None:intergenic 70.0%
GGAAGCCCGGTCACTGCAGG+TGG + chr2_4:12287492-12287511 None:intergenic 70.0%
GACGGTCGGCGGCACCATCA+AGG - chr2_4:12288712-12288731 Msa0315720:intron 70.0%
CGGTCGGCGGCACCATCAAG+GGG - chr2_4:12288714-12288733 Msa0315720:intron 70.0%
TCGGCGGCACCATCAAGGGG+AGG - chr2_4:12288717-12288736 Msa0315720:intron 70.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 12285664 12291080 12285664 ID=Msa0315720;Name=Msa0315720
chr2_4 mRNA 12285664 12291080 12285664 ID=Msa0315720-mRNA-1;Parent=Msa0315720;Name=Msa0315720-mRNA-1;_AED=0.03;_eAED=0.03;_QI=54|1|1|1|0.85|0.75|8|507|375
chr2_4 exon 12285664 12286142 12285664 ID=Msa0315720-mRNA-1:exon:4748;Parent=Msa0315720-mRNA-1
chr2_4 exon 12286297 12286477 12286297 ID=Msa0315720-mRNA-1:exon:4747;Parent=Msa0315720-mRNA-1
chr2_4 exon 12286839 12286903 12286839 ID=Msa0315720-mRNA-1:exon:4746;Parent=Msa0315720-mRNA-1
chr2_4 exon 12287577 12287652 12287577 ID=Msa0315720-mRNA-1:exon:4745;Parent=Msa0315720-mRNA-1
chr2_4 exon 12288841 12289005 12288841 ID=Msa0315720-mRNA-1:exon:4744;Parent=Msa0315720-mRNA-1
chr2_4 exon 12289118 12289354 12289118 ID=Msa0315720-mRNA-1:exon:4743;Parent=Msa0315720-mRNA-1
chr2_4 exon 12289634 12289750 12289634 ID=Msa0315720-mRNA-1:exon:4742;Parent=Msa0315720-mRNA-1
chr2_4 exon 12290712 12291080 12290712 ID=Msa0315720-mRNA-1:exon:4741;Parent=Msa0315720-mRNA-1
chr2_4 five_prime_UTR 12291027 12291080 12291027 ID=Msa0315720-mRNA-1:five_prime_utr;Parent=Msa0315720-mRNA-1
chr2_4 CDS 12290712 12291026 12290712 ID=Msa0315720-mRNA-1:cds;Parent=Msa0315720-mRNA-1
chr2_4 CDS 12289634 12289750 12289634 ID=Msa0315720-mRNA-1:cds;Parent=Msa0315720-mRNA-1
chr2_4 CDS 12289118 12289354 12289118 ID=Msa0315720-mRNA-1:cds;Parent=Msa0315720-mRNA-1
chr2_4 CDS 12288841 12289005 12288841 ID=Msa0315720-mRNA-1:cds;Parent=Msa0315720-mRNA-1
chr2_4 CDS 12287577 12287652 12287577 ID=Msa0315720-mRNA-1:cds;Parent=Msa0315720-mRNA-1
chr2_4 CDS 12286839 12286903 12286839 ID=Msa0315720-mRNA-1:cds;Parent=Msa0315720-mRNA-1
chr2_4 CDS 12286325 12286477 12286325 ID=Msa0315720-mRNA-1:cds;Parent=Msa0315720-mRNA-1
chr2_4 three_prime_UTR 12286297 12286324 12286297 ID=Msa0315720-mRNA-1:three_prime_utr;Parent=Msa0315720-mRNA-1
chr2_4 three_prime_UTR 12285664 12286142 12285664 ID=Msa0315720-mRNA-1:three_prime_utr;Parent=Msa0315720-mRNA-1
Gene Sequence

>Msa0315720

ATGAACTGTAACCATGCCACTTTCCTTTTGGTTTCATTGCCACCACCACCACCACTGCTTTTCCCAAAATTCGATTATCCAGTGCCAAAGAAAACTCTTTTAACACTAAACCTGAAGAGAAATCCAATTCTAAGAATTAAAGCTTCAAAAGATGATAATGGGCAATCACCAAATTGGTCTAAGTGGATTCCCACTGGCTCTTTTGCTGCTGATAAGGTTTTCAGATTGATTTCAAGTGCTACTGCTAGTCCCATTGGACAGTTTGTTTCTTCCCCCACTACGTTTCTTCACTCTATTGATCCACGAGTTAAATTGGTATGGCTTTTAGTTCTGGTTGTTCTACCGGCAAGGTCGCATATAATTATGCGATTTGGATTAGTAGCATACTTGACTTTGCTTTCAATTTGGGTTCTACCAAGAAATACTTGGAAGGATCAATTGGGTCGTGTTTATTTTCTGTCGGCATTGTTATTCATAACATTAGGACTGGGTTCAGATGGCGTGCCTGCACTTGTTCAGTCAAGAACTCCACCACCTGCAGTGACCGGGCTTCCAAATCTTCCTATATCTTTAACAGGTTATTCATATGTAATCTCAAAGTTAGGTCCATTAACCTTTACGAGGAAAGGATTATCTGTAGGAAGCACTGTTGCATGTTTGACTTTTACAGTATTTCAAAGTGCAAGTCTCTGCCTCACAACCACAACCCCTGAACAACTAGCATCTGCATTGCGATGGTTCATGCTTCCTCTGAGATACATAGGCGTATCTGTATCAGAAATCGTGCTTACCCTTTTACTGTCATTGAGATTTATCAGTCTAGTTTTTGATGAGGTCCGGAACATTGCATTGGGAATTGTGTCTCGTAGGGTAAATTGGAAACAACTGACTGCTATGGAGACAATTGATATTTTCTTTAACTACTTCCGTCGCATCTTCAAAAATATTTTCAGCCACGCAGAGCAAATTTCCCAGGCTATGATAGCCAGAGGTTTTAAAGGGGACGTCGAGAATCACAAAATTTATTTCTTGTCAGAATCATCTTTTGGGATGGCAGATATTGTATGTTTGTTGAACTTGACAGTTGTCATAGGAGCTTCTCTTCTGTCTGAGTACTACCTTGTCTAA

Protein sequence

>Msa0315720

MNCNHATFLLVSLPPPPPLLFPKFDYPVPKKTLLTLNLKRNPILRIKASKDDNGQSPNWSKWIPTGSFAADKVFRLISSATASPIGQFVSSPTTFLHSIDPRVKLVWLLVLVVLPARSHIIMRFGLVAYLTLLSIWVLPRNTWKDQLGRVYFLSALLFITLGLGSDGVPALVQSRTPPPAVTGLPNLPISLTGYSYVISKLGPLTFTRKGLSVGSTVACLTFTVFQSASLCLTTTTPEQLASALRWFMLPLRYIGVSVSEIVLTLLLSLRFISLVFDEVRNIALGIVSRRVNWKQLTAMETIDIFFNYFRRIFKNIFSHAEQISQAMIARGFKGDVENHKIYFLSESSFGMADIVCLLNLTVVIGASLLSEYYLV*