AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0035510


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0035510 MtrunA17_Chr1g0197711 95.556 315 5 2 1 315 1 306 0.0 598
Msa0035510 MtrunA17_Chr3g0105721 45.175 228 118 2 86 313 81 301 1.86e-67 213
Msa0035510 MtrunA17_Chr4g0006481 41.870 246 132 3 72 313 1 239 5.90e-65 204
Msa0035510 MtrunA17_Chr4g0006501 43.721 215 114 2 94 308 52 259 2.82e-59 191
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0035510 AT5G04490.1 65.041 246 80 1 70 315 65 304 1.06e-113 331
Msa0035510 AT5G04490.2 68.478 184 52 1 70 253 65 242 6.42e-88 263
Msa0035510 AT5G58560.1 41.667 228 126 2 86 313 87 307 1.04e-62 201

Find 94 sgRNAs with CRISPR-Local

Find 320 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTACTTATTAAACCATTAT+TGG 0.158312 1_1:-63747240 None:intergenic
AGCATAGCAATGCTTATATT+TGG 0.177370 1_1:+63746592 Msa0035510:CDS
AATGCTTATATTTGGATTCT+TGG 0.197393 1_1:+63746600 Msa0035510:CDS
TATAAAATCATTTCCAATAA+TGG 0.205255 1_1:+63747227 Msa0035510:three_prime_UTR
TGTGAATTTCTTGAGGCTTT+TGG 0.214520 1_1:+63746113 Msa0035510:CDS
TTTGGATTCTTGGTTTCAAT+TGG 0.256377 1_1:+63746610 Msa0035510:CDS
GGTGCCACTGTTGGTGTTCT+TGG 0.284632 1_1:+63745576 Msa0035510:CDS
GATATCATTGGTAGAAGATA+TGG 0.303985 1_1:+63746526 Msa0035510:CDS
GAGGTGGTGGTGGTTGTTGC+CGG 0.304454 1_1:-63745402 None:intergenic
TTAATATCCCAACATAATAA+AGG 0.311784 1_1:-63746313 None:intergenic
AAAGCAATCCTGATAATATA+TGG 0.321784 1_1:-63745894 None:intergenic
ATTTATCTAAATCACAGAAA+TGG 0.324467 1_1:-63745947 None:intergenic
GAAATGGGGTACCTGAAAAT+TGG 0.330597 1_1:-63745931 None:intergenic
TTTATCTAAATCACAGAAAT+GGG 0.333704 1_1:-63745946 None:intergenic
TTCTGTTCCACTAGTAACTA+TGG 0.342085 1_1:+63746923 Msa0035510:CDS
TAATATCCCAACATAATAAA+GGG 0.358330 1_1:-63746312 None:intergenic
TCCAATTGGGGTTGTTGCCT+TGG 0.359168 1_1:+63746367 Msa0035510:CDS
CTTTCCATCATTAATAACTT+TGG 0.360954 1_1:+63746961 Msa0035510:exon
TGTTGAGTGCTATTGTGTTC+TGG 0.369590 1_1:+63746336 Msa0035510:CDS
TTACAAATCTTTCATCTAAA+CGG 0.377409 1_1:-63745506 None:intergenic
GAGGTCCCCTTTATTATGTT+GGG 0.378811 1_1:+63746306 Msa0035510:CDS
AAACTGGTCCATATATTATC+AGG 0.380119 1_1:+63745886 Msa0035510:CDS
TTCTGGCGTGAATCTCCAAT+TGG 0.390436 1_1:+63746353 Msa0035510:CDS
TTTGGTGAATGGTCTCTCAT+TGG 0.391870 1_1:+63746131 Msa0035510:CDS
GTGGGTTTGTTCCAAGGAAA+AGG 0.392595 1_1:-63745429 None:intergenic
GAAATTGATGAAAGGTATAT+AGG 0.392812 1_1:-63746988 None:intergenic
TTGGATTCTTGGTTTCAATT+GGG 0.404183 1_1:+63746611 Msa0035510:CDS
AACAAATAACCTCACCTGAT+TGG 0.413537 1_1:+63745237 None:intergenic
ATTAGATCTTGAGCATTTGC+AGG 0.415465 1_1:-63745543 None:intergenic
CTCTCATTGGTTACTGATCC+AGG 0.421525 1_1:+63746144 Msa0035510:CDS
CTCTCCAAAGTTATTAATGA+TGG 0.428032 1_1:-63746965 None:intergenic
ACAGTGTCGTTTGTTGTTGT+GGG 0.430951 1_1:-63745447 None:intergenic
TCTGGCGTGAATCTCCAATT+GGG 0.433764 1_1:+63746354 Msa0035510:CDS
CTCCGTGCACCGCCGTTCAC+CGG 0.435055 1_1:+63745383 Msa0035510:CDS
GACAGTGTCGTTTGTTGTTG+TGG 0.438491 1_1:-63745448 None:intergenic
AGGAAAAGGGTTGGAGGTGG+TGG 0.441202 1_1:-63745415 None:intergenic
TCATCGACCACCTCAGTAAT+GGG 0.442023 1_1:-63746894 None:intergenic
AGAGGTCCCCTTTATTATGT+TGG 0.445081 1_1:+63746305 Msa0035510:CDS
GCAGGGTCTGAGCAGAAAAC+TGG 0.450996 1_1:+63745870 Msa0035510:intron
AAAAGGGTTGGAGGTGGTGG+TGG 0.452390 1_1:-63745412 None:intergenic
ATAATAAGTTCTCTCCAATC+AGG 0.452408 1_1:-63745251 None:intergenic
GCCAAGGCAACAACCCCAAT+TGG 0.456276 1_1:-63746368 None:intergenic
AGCAGTGGTACACTGTAAAT+AGG 0.461451 1_1:+63747172 Msa0035510:three_prime_UTR
CGGCGGTGCACGGAGGAGAA+TGG 0.465256 1_1:-63745375 None:intergenic
CAGCAAAGTAACGAGCTTCA+AGG 0.476437 1_1:-63746077 None:intergenic
GTCACAGATTTGATGAGTCC+TGG 0.481572 1_1:-63746162 None:intergenic
TGGTGGTTGTTGCCGGTGAA+CGG 0.484199 1_1:-63745395 None:intergenic
ACTGAGAGAGTGACAAGAGT+TGG 0.484845 1_1:-63745317 None:intergenic
GACATGTGCAGTTTGATTTG+TGG 0.485754 1_1:+63746814 Msa0035510:CDS
TTCCTCTTGTGAATTTCTTG+AGG 0.487667 1_1:+63746106 Msa0035510:CDS
GTTGTTGTGGGTTTGTTCCA+AGG 0.487703 1_1:-63745435 None:intergenic
CTGTACTACTATTCAGCTCT+AGG 0.488201 1_1:+63746792 Msa0035510:CDS
TGCCGGTGAACGGCGGTGCA+CGG 0.494482 1_1:-63745385 None:intergenic
GTCATCGACCACCTCAGTAA+TGG 0.501122 1_1:-63746895 None:intergenic
GCCACTGTTGGTGTTCTTGG+CGG 0.506473 1_1:+63745579 Msa0035510:CDS
TGGGTTTGTTCCAAGGAAAA+GGG 0.511191 1_1:-63745428 None:intergenic
CTAGGTGTAGCTGATATCAT+TGG 0.520300 1_1:+63746514 Msa0035510:intron
AGCAAAGTAACGAGCTTCAA+GGG 0.523609 1_1:-63746076 None:intergenic
TTTGTTCCAAGGAAAAGGGT+TGG 0.535640 1_1:-63745424 None:intergenic
GTTCCAAGGAAAAGGGTTGG+AGG 0.535671 1_1:-63745421 None:intergenic
AAAGACACAAAAGCAACTCT+TGG 0.543465 1_1:-63746846 None:intergenic
CCAAGGAAAAGGGTTGGAGG+TGG 0.543991 1_1:-63745418 None:intergenic
ATATCATTGGTAGAAGATAT+GGG 0.547601 1_1:+63746527 Msa0035510:CDS
ATCAAATCTGTGACTAGGAA+AGG 0.549956 1_1:+63746171 Msa0035510:CDS
CACAATGTTGGTGCCACTGT+TGG 0.565061 1_1:+63745567 Msa0035510:CDS
GCCTTGGCAATGATGTGTGG+AGG 0.567586 1_1:+63746383 Msa0035510:CDS
CCTTGGCAATGATGTGTGGA+GGG 0.571638 1_1:+63746384 Msa0035510:CDS
GCAATGATGTGTGGAGGGGA+TGG 0.575045 1_1:+63746389 Msa0035510:CDS
TTAGATCTTGAGCATTTGCA+GGG 0.579429 1_1:-63745542 None:intergenic
CGACCACCTCAGTAATGGGT+AGG 0.581372 1_1:-63746890 None:intergenic
CCCTACAGAGAATTGCTAAG+AGG 0.586996 1_1:+63746287 Msa0035510:intron
CACTGTGAAATTAACAGCAG+TGG 0.588064 1_1:+63747157 Msa0035510:three_prime_UTR
GTCACTGCCATAGTTACTAG+TGG 0.589305 1_1:-63746930 None:intergenic
GGAGAATGGAAAGAGGTGAG+AGG 0.590292 1_1:-63745361 None:intergenic
GTTGCCTTGGCAATGATGTG+TGG 0.591787 1_1:+63746380 Msa0035510:CDS
CCCTCCACACATCATTGCCA+AGG 0.594888 1_1:-63746384 None:intergenic
CAAGATCTAATCCACAATGT+TGG 0.596614 1_1:+63745555 Msa0035510:CDS
CAACAGTGGCACCAACATTG+TGG 0.602793 1_1:-63745566 None:intergenic
AGCCTCAAGAAATTCACAAG+AGG 0.606723 1_1:-63746108 None:intergenic
GCACGGAGGAGAATGGAAAG+AGG 0.609876 1_1:-63745368 None:intergenic
GTCCCTACCCATTACTGAGG+TGG 0.610171 1_1:+63746887 Msa0035510:CDS
GACCACCTCAGTAATGGGTA+GGG 0.617402 1_1:-63746889 None:intergenic
GCCGCCAAGAACACCAACAG+TGG 0.621865 1_1:-63745580 None:intergenic
GACTCATCAAATCTGTGACT+AGG 0.622315 1_1:+63746166 Msa0035510:CDS
CTTGGCAATGATGTGTGGAG+GGG 0.628426 1_1:+63746385 Msa0035510:CDS
AATATCCCAACATAATAAAG+GGG 0.628744 1_1:-63746311 None:intergenic
GGTGGGAAGAAATTGATGAA+AGG 0.633350 1_1:-63746996 None:intergenic
CGGACACTACGATGTACTGA+AGG 0.643227 1_1:-63745486 None:intergenic
CTGGCGTGAATCTCCAATTG+GGG 0.652571 1_1:+63746355 Msa0035510:CDS
GGAGTCCCTACCCATTACTG+AGG 0.664036 1_1:+63746884 Msa0035510:CDS
AAGTTCTCTCCAATCAGGTG+AGG 0.674882 1_1:-63745246 None:intergenic
TTATCTAAATCACAGAAATG+GGG 0.675535 1_1:-63745945 None:intergenic
CGGTGAACGGCGGTGCACGG+AGG 0.687859 1_1:-63745382 None:intergenic
TGGTTGTTGCCGGTGAACGG+CGG 0.696223 1_1:-63745392 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GGATTTTTTTTGTTTATTTA+AGG - chr1_1:63745277-63745296 None:intergenic 15.0%
!! TAAACAAAAAAAATCCTATA+AGG + chr1_1:63745281-63745300 Msa0035510:five_prime_UTR 15.0%
!! AAACAAAAAAAATCCTATAA+GGG + chr1_1:63745282-63745301 Msa0035510:five_prime_UTR 15.0%
!!! AATGTCTTTATTCATTTTTT+TGG + chr1_1:63746213-63746232 Msa0035510:intron 15.0%
!!! TTCATTTTTTTGGAATTATT+TGG + chr1_1:63746223-63746242 Msa0035510:intron 15.0%
!! TATAAAATCATTTCCAATAA+TGG + chr1_1:63747227-63747246 Msa0035510:three_prime_UTR 15.0%
!!! GGATTTTTTTTGTTTATTTA+AGG - chr1_1:63745277-63745296 None:intergenic 15.0%
!! TAAACAAAAAAAATCCTATA+AGG + chr1_1:63745281-63745300 Msa0035510:five_prime_UTR 15.0%
!! AAACAAAAAAAATCCTATAA+GGG + chr1_1:63745282-63745301 Msa0035510:five_prime_UTR 15.0%
!!! AATGTCTTTATTCATTTTTT+TGG + chr1_1:63746213-63746232 Msa0035510:intron 15.0%
!!! TTCATTTTTTTGGAATTATT+TGG + chr1_1:63746223-63746242 Msa0035510:intron 15.0%
!! TATAAAATCATTTCCAATAA+TGG + chr1_1:63747227-63747246 Msa0035510:three_prime_UTR 15.0%
!! TTACAAATCTTTCATCTAAA+CGG - chr1_1:63745509-63745528 None:intergenic 20.0%
!!! GTCAATTCATATATTTTTCT+TGG - chr1_1:63745740-63745759 None:intergenic 20.0%
!! TTTATCTAAATCACAGAAAT+GGG - chr1_1:63745949-63745968 None:intergenic 20.0%
!! ATTTATCTAAATCACAGAAA+TGG - chr1_1:63745950-63745969 None:intergenic 20.0%
!! TAATATCCCAACATAATAAA+GGG - chr1_1:63746315-63746334 None:intergenic 20.0%
!! TTAATATCCCAACATAATAA+AGG - chr1_1:63746316-63746335 None:intergenic 20.0%
!! TTAATCAACATTGAATTTGA+TGG + chr1_1:63746488-63746507 Msa0035510:intron 20.0%
!! AAGAATAATTCAAAAAACAG+TGG - chr1_1:63747020-63747039 None:intergenic 20.0%
!! TTACAAATCTTTCATCTAAA+CGG - chr1_1:63745509-63745528 None:intergenic 20.0%
!!! GTCAATTCATATATTTTTCT+TGG - chr1_1:63745740-63745759 None:intergenic 20.0%
!! TTTATCTAAATCACAGAAAT+GGG - chr1_1:63745949-63745968 None:intergenic 20.0%
!! ATTTATCTAAATCACAGAAA+TGG - chr1_1:63745950-63745969 None:intergenic 20.0%
!! TAATATCCCAACATAATAAA+GGG - chr1_1:63746315-63746334 None:intergenic 20.0%
!! TTAATATCCCAACATAATAA+AGG - chr1_1:63746316-63746335 None:intergenic 20.0%
!! TTAATCAACATTGAATTTGA+TGG + chr1_1:63746488-63746507 Msa0035510:intron 20.0%
!! AAGAATAATTCAAAAAACAG+TGG - chr1_1:63747020-63747039 None:intergenic 20.0%
! AAAAAAAATCCTATAAGGGT+TGG + chr1_1:63745286-63745305 Msa0035510:five_prime_UTR 25.0%
! AAACATCATTGATCAAGTAA+TGG + chr1_1:63745644-63745663 Msa0035510:intron 25.0%
!!! GATCCATTTTTTACTTGTTT+TGG + chr1_1:63745763-63745782 Msa0035510:intron 25.0%
! GAACCAAAACAAGTAAAAAA+TGG - chr1_1:63745769-63745788 None:intergenic 25.0%
! AAAGCAATCCTGATAATATA+TGG - chr1_1:63745897-63745916 None:intergenic 25.0%
! TTATCTAAATCACAGAAATG+GGG - chr1_1:63745948-63745967 None:intergenic 25.0%
!!! ATTGCTTTGTTTGAATGTTT+TGG + chr1_1:63746031-63746050 Msa0035510:intron 25.0%
!!! AATGTTTTGGTGTTAATGTT+AGG + chr1_1:63746044-63746063 Msa0035510:intron 25.0%
! AAGACATTTGATACTTACTT+TGG - chr1_1:63746201-63746220 None:intergenic 25.0%
!!! TTTTTGGAATTATTTGGTCA+TGG + chr1_1:63746229-63746248 Msa0035510:intron 25.0%
! AATATCCCAACATAATAAAG+GGG - chr1_1:63746314-63746333 None:intergenic 25.0%
! ATAAAGCAATGTGTAAAGAA+AGG - chr1_1:63746422-63746441 None:intergenic 25.0%
!! TTATTTCTTAAACCTTTCCT+AGG + chr1_1:63746438-63746457 Msa0035510:intron 25.0%
! TATTTCTTAAACCTTTCCTA+GGG + chr1_1:63746439-63746458 Msa0035510:intron 25.0%
! AAAAAATTGCAAAGCTTCTA+GGG - chr1_1:63746469-63746488 None:intergenic 25.0%
! AAAAAAATTGCAAAGCTTCT+AGG - chr1_1:63746470-63746489 None:intergenic 25.0%
! ATATCATTGGTAGAAGATAT+GGG + chr1_1:63746527-63746546 Msa0035510:CDS 25.0%
! TTACAACCAAAAAAAGAGTT+GGG + chr1_1:63746564-63746583 Msa0035510:CDS 25.0%
! AATGCTTATATTTGGATTCT+TGG + chr1_1:63746600-63746619 Msa0035510:CDS 25.0%
!!! AAAAAGTACTGTTGAAAAAG+TGG - chr1_1:63746658-63746677 None:intergenic 25.0%
! CTTTCCATCATTAATAACTT+TGG + chr1_1:63746961-63746980 Msa0035510:exon 25.0%
!! GAAATTGATGAAAGGTATAT+AGG - chr1_1:63746991-63747010 None:intergenic 25.0%
! ATAATTCAAAAAACAGTGGT+GGG - chr1_1:63747016-63747035 None:intergenic 25.0%
! AATAATTCAAAAAACAGTGG+TGG - chr1_1:63747017-63747036 None:intergenic 25.0%
! AAAAAAAATCCTATAAGGGT+TGG + chr1_1:63745286-63745305 Msa0035510:five_prime_UTR 25.0%
! AAACATCATTGATCAAGTAA+TGG + chr1_1:63745644-63745663 Msa0035510:intron 25.0%
!!! GATCCATTTTTTACTTGTTT+TGG + chr1_1:63745763-63745782 Msa0035510:intron 25.0%
! GAACCAAAACAAGTAAAAAA+TGG - chr1_1:63745769-63745788 None:intergenic 25.0%
! AAAGCAATCCTGATAATATA+TGG - chr1_1:63745897-63745916 None:intergenic 25.0%
! TTATCTAAATCACAGAAATG+GGG - chr1_1:63745948-63745967 None:intergenic 25.0%
!!! ATTGCTTTGTTTGAATGTTT+TGG + chr1_1:63746031-63746050 Msa0035510:intron 25.0%
!!! AATGTTTTGGTGTTAATGTT+AGG + chr1_1:63746044-63746063 Msa0035510:intron 25.0%
! AAGACATTTGATACTTACTT+TGG - chr1_1:63746201-63746220 None:intergenic 25.0%
!!! TTTTTGGAATTATTTGGTCA+TGG + chr1_1:63746229-63746248 Msa0035510:intron 25.0%
! AATATCCCAACATAATAAAG+GGG - chr1_1:63746314-63746333 None:intergenic 25.0%
! ATAAAGCAATGTGTAAAGAA+AGG - chr1_1:63746422-63746441 None:intergenic 25.0%
!! TTATTTCTTAAACCTTTCCT+AGG + chr1_1:63746438-63746457 Msa0035510:intron 25.0%
! TATTTCTTAAACCTTTCCTA+GGG + chr1_1:63746439-63746458 Msa0035510:intron 25.0%
! AAAAAATTGCAAAGCTTCTA+GGG - chr1_1:63746469-63746488 None:intergenic 25.0%
! AAAAAAATTGCAAAGCTTCT+AGG - chr1_1:63746470-63746489 None:intergenic 25.0%
! ATATCATTGGTAGAAGATAT+GGG + chr1_1:63746527-63746546 Msa0035510:CDS 25.0%
! TTACAACCAAAAAAAGAGTT+GGG + chr1_1:63746564-63746583 Msa0035510:CDS 25.0%
! AATGCTTATATTTGGATTCT+TGG + chr1_1:63746600-63746619 Msa0035510:CDS 25.0%
!!! AAAAAGTACTGTTGAAAAAG+TGG - chr1_1:63746658-63746677 None:intergenic 25.0%
! CTTTCCATCATTAATAACTT+TGG + chr1_1:63746961-63746980 Msa0035510:exon 25.0%
!! GAAATTGATGAAAGGTATAT+AGG - chr1_1:63746991-63747010 None:intergenic 25.0%
! ATAATTCAAAAAACAGTGGT+GGG - chr1_1:63747016-63747035 None:intergenic 25.0%
! AATAATTCAAAAAACAGTGG+TGG - chr1_1:63747017-63747036 None:intergenic 25.0%
ATAATAAGTTCTCTCCAATC+AGG - chr1_1:63745254-63745273 None:intergenic 30.0%
TCATTGATCAAGTAATGGTT+TGG + chr1_1:63745649-63745668 Msa0035510:intron 30.0%
!! ATCTGTGTTTGCTTTGAAAT+TGG + chr1_1:63745832-63745851 Msa0035510:intron 30.0%
AAACTGGTCCATATATTATC+AGG + chr1_1:63745886-63745905 Msa0035510:CDS 30.0%
!!! ATTATCAGGATTGCTTTTTC+TGG + chr1_1:63745900-63745919 Msa0035510:CDS 30.0%
! TCTTTGCTTTATTCCTTATG+AGG + chr1_1:63745991-63746010 Msa0035510:intron 30.0%
TTCCTTATGAGGAAAGTTTA+AGG + chr1_1:63746002-63746021 Msa0035510:intron 30.0%
! CATTGAATTTGATGGTTACT+AGG + chr1_1:63746496-63746515 Msa0035510:intron 30.0%
GATATCATTGGTAGAAGATA+TGG + chr1_1:63746526-63746545 Msa0035510:CDS 30.0%
!!! CAACTCTTTTTTTGGTTGTA+AGG - chr1_1:63746565-63746584 None:intergenic 30.0%
CTTACAACCAAAAAAAGAGT+TGG + chr1_1:63746563-63746582 Msa0035510:CDS 30.0%
AGCATAGCAATGCTTATATT+TGG + chr1_1:63746592-63746611 Msa0035510:CDS 30.0%
TTTGGATTCTTGGTTTCAAT+TGG + chr1_1:63746610-63746629 Msa0035510:CDS 30.0%
TTGGATTCTTGGTTTCAATT+GGG + chr1_1:63746611-63746630 Msa0035510:CDS 30.0%
AGTGTGAAAATCTATCTACT+TGG - chr1_1:63746741-63746760 None:intergenic 30.0%
CTCTCCAAAGTTATTAATGA+TGG - chr1_1:63746968-63746987 None:intergenic 30.0%
TCTTACTCTTAGTATGTGTT+TGG + chr1_1:63747036-63747055 Msa0035510:intron 30.0%
! TTAGTATGTGTTTGGAATAC+CGG + chr1_1:63747044-63747063 Msa0035510:intron 30.0%
! AAGCTAAAAAAAGCACGTTT+AGG + chr1_1:63747071-63747090 Msa0035510:intron 30.0%
ATAATAAGTTCTCTCCAATC+AGG - chr1_1:63745254-63745273 None:intergenic 30.0%
TCATTGATCAAGTAATGGTT+TGG + chr1_1:63745649-63745668 Msa0035510:intron 30.0%
!! ATCTGTGTTTGCTTTGAAAT+TGG + chr1_1:63745832-63745851 Msa0035510:intron 30.0%
AAACTGGTCCATATATTATC+AGG + chr1_1:63745886-63745905 Msa0035510:CDS 30.0%
!!! ATTATCAGGATTGCTTTTTC+TGG + chr1_1:63745900-63745919 Msa0035510:CDS 30.0%
! TCTTTGCTTTATTCCTTATG+AGG + chr1_1:63745991-63746010 Msa0035510:intron 30.0%
TTCCTTATGAGGAAAGTTTA+AGG + chr1_1:63746002-63746021 Msa0035510:intron 30.0%
! CATTGAATTTGATGGTTACT+AGG + chr1_1:63746496-63746515 Msa0035510:intron 30.0%
GATATCATTGGTAGAAGATA+TGG + chr1_1:63746526-63746545 Msa0035510:CDS 30.0%
!!! CAACTCTTTTTTTGGTTGTA+AGG - chr1_1:63746565-63746584 None:intergenic 30.0%
CTTACAACCAAAAAAAGAGT+TGG + chr1_1:63746563-63746582 Msa0035510:CDS 30.0%
AGCATAGCAATGCTTATATT+TGG + chr1_1:63746592-63746611 Msa0035510:CDS 30.0%
TTTGGATTCTTGGTTTCAAT+TGG + chr1_1:63746610-63746629 Msa0035510:CDS 30.0%
TTGGATTCTTGGTTTCAATT+GGG + chr1_1:63746611-63746630 Msa0035510:CDS 30.0%
AGTGTGAAAATCTATCTACT+TGG - chr1_1:63746741-63746760 None:intergenic 30.0%
CTCTCCAAAGTTATTAATGA+TGG - chr1_1:63746968-63746987 None:intergenic 30.0%
TCTTACTCTTAGTATGTGTT+TGG + chr1_1:63747036-63747055 Msa0035510:intron 30.0%
! TTAGTATGTGTTTGGAATAC+CGG + chr1_1:63747044-63747063 Msa0035510:intron 30.0%
! AAGCTAAAAAAAGCACGTTT+AGG + chr1_1:63747071-63747090 Msa0035510:intron 30.0%
GATCAAAAACCAACCCTTAT+AGG - chr1_1:63745298-63745317 None:intergenic 35.0%
TTAGATCTTGAGCATTTGCA+GGG - chr1_1:63745545-63745564 None:intergenic 35.0%
ATTAGATCTTGAGCATTTGC+AGG - chr1_1:63745546-63745565 None:intergenic 35.0%
CAAGATCTAATCCACAATGT+TGG + chr1_1:63745555-63745574 Msa0035510:CDS 35.0%
TGCATGCAAATTGCAAAGTA+AGG - chr1_1:63745701-63745720 None:intergenic 35.0%
!!! GATTGCTTTTTCTGGTTTCA+TGG + chr1_1:63745908-63745927 Msa0035510:CDS 35.0%
TGCCTTAAACTTTCCTCATA+AGG - chr1_1:63746007-63746026 None:intergenic 35.0%
! ATGAGGAAAGTTTAAGGCAT+TGG + chr1_1:63746008-63746027 Msa0035510:intron 35.0%
TTCCTCTTGTGAATTTCTTG+AGG + chr1_1:63746106-63746125 Msa0035510:CDS 35.0%
! TGTGAATTTCTTGAGGCTTT+TGG + chr1_1:63746113-63746132 Msa0035510:CDS 35.0%
ATCAAATCTGTGACTAGGAA+AGG + chr1_1:63746171-63746190 Msa0035510:CDS 35.0%
TGGAATTATTTGGTCATGGA+AGG + chr1_1:63746233-63746252 Msa0035510:intron 35.0%
TAGGGTATGTAAACAGTACA+AGG - chr1_1:63746272-63746291 None:intergenic 35.0%
TGCTGATATTTATTGCATGC+AGG + chr1_1:63746766-63746785 Msa0035510:intron 35.0%
AAAGACACAAAAGCAACTCT+TGG - chr1_1:63746849-63746868 None:intergenic 35.0%
!!! AGTTGCTTTTGTGTCTTTTG+TGG + chr1_1:63746851-63746870 Msa0035510:CDS 35.0%
TTCTGTTCCACTAGTAACTA+TGG + chr1_1:63746923-63746942 Msa0035510:CDS 35.0%
!!! TGCTTTTTTTAGCTTTGCAC+CGG - chr1_1:63747066-63747085 None:intergenic 35.0%
TTTAGGCAAAAGCTGGAATT+GGG + chr1_1:63747088-63747107 Msa0035510:intron 35.0%
!!! TGGCATCACGTTTTTTTTCA+CGG - chr1_1:63747123-63747142 None:intergenic 35.0%
GATCAAAAACCAACCCTTAT+AGG - chr1_1:63745298-63745317 None:intergenic 35.0%
TTAGATCTTGAGCATTTGCA+GGG - chr1_1:63745545-63745564 None:intergenic 35.0%
ATTAGATCTTGAGCATTTGC+AGG - chr1_1:63745546-63745565 None:intergenic 35.0%
CAAGATCTAATCCACAATGT+TGG + chr1_1:63745555-63745574 Msa0035510:CDS 35.0%
TGCATGCAAATTGCAAAGTA+AGG - chr1_1:63745701-63745720 None:intergenic 35.0%
!!! GATTGCTTTTTCTGGTTTCA+TGG + chr1_1:63745908-63745927 Msa0035510:CDS 35.0%
TGCCTTAAACTTTCCTCATA+AGG - chr1_1:63746007-63746026 None:intergenic 35.0%
! ATGAGGAAAGTTTAAGGCAT+TGG + chr1_1:63746008-63746027 Msa0035510:intron 35.0%
TTCCTCTTGTGAATTTCTTG+AGG + chr1_1:63746106-63746125 Msa0035510:CDS 35.0%
! TGTGAATTTCTTGAGGCTTT+TGG + chr1_1:63746113-63746132 Msa0035510:CDS 35.0%
ATCAAATCTGTGACTAGGAA+AGG + chr1_1:63746171-63746190 Msa0035510:CDS 35.0%
TGGAATTATTTGGTCATGGA+AGG + chr1_1:63746233-63746252 Msa0035510:intron 35.0%
TAGGGTATGTAAACAGTACA+AGG - chr1_1:63746272-63746291 None:intergenic 35.0%
TGCTGATATTTATTGCATGC+AGG + chr1_1:63746766-63746785 Msa0035510:intron 35.0%
AAAGACACAAAAGCAACTCT+TGG - chr1_1:63746849-63746868 None:intergenic 35.0%
!!! AGTTGCTTTTGTGTCTTTTG+TGG + chr1_1:63746851-63746870 Msa0035510:CDS 35.0%
TTCTGTTCCACTAGTAACTA+TGG + chr1_1:63746923-63746942 Msa0035510:CDS 35.0%
!!! TGCTTTTTTTAGCTTTGCAC+CGG - chr1_1:63747066-63747085 None:intergenic 35.0%
TTTAGGCAAAAGCTGGAATT+GGG + chr1_1:63747088-63747107 Msa0035510:intron 35.0%
!!! TGGCATCACGTTTTTTTTCA+CGG - chr1_1:63747123-63747142 None:intergenic 35.0%
TTTGTTCCAAGGAAAAGGGT+TGG - chr1_1:63745427-63745446 None:intergenic 40.0%
! TGGGTTTGTTCCAAGGAAAA+GGG - chr1_1:63745431-63745450 None:intergenic 40.0%
!! ACAGTGTCGTTTGTTGTTGT+GGG - chr1_1:63745450-63745469 None:intergenic 40.0%
!! GCTTTGAAATTGGTGTCACA+TGG + chr1_1:63745842-63745861 Msa0035510:intron 40.0%
!! AAATTGGTGTCACATGGTGA+TGG + chr1_1:63745848-63745867 Msa0035510:intron 40.0%
! TGGTTTCATGGCCAATTTTC+AGG + chr1_1:63745920-63745939 Msa0035510:CDS 40.0%
! GAAATGGGGTACCTGAAAAT+TGG - chr1_1:63745934-63745953 None:intergenic 40.0%
AGCAAAGTAACGAGCTTCAA+GGG - chr1_1:63746079-63746098 None:intergenic 40.0%
AGCCTCAAGAAATTCACAAG+AGG - chr1_1:63746111-63746130 None:intergenic 40.0%
! TTCTTGAGGCTTTTGGTGAA+TGG + chr1_1:63746120-63746139 Msa0035510:CDS 40.0%
TTTGGTGAATGGTCTCTCAT+TGG + chr1_1:63746131-63746150 Msa0035510:CDS 40.0%
GACTCATCAAATCTGTGACT+AGG + chr1_1:63746166-63746185 Msa0035510:CDS 40.0%
CCTCTTAGCAATTCTCTGTA+GGG - chr1_1:63746290-63746309 None:intergenic 40.0%
ACCTCTTAGCAATTCTCTGT+AGG - chr1_1:63746291-63746310 None:intergenic 40.0%
AGAGGTCCCCTTTATTATGT+TGG + chr1_1:63746305-63746324 Msa0035510:CDS 40.0%
GAGGTCCCCTTTATTATGTT+GGG + chr1_1:63746306-63746325 Msa0035510:CDS 40.0%
! TGTTGAGTGCTATTGTGTTC+TGG + chr1_1:63746336-63746355 Msa0035510:CDS 40.0%
CTAGGTGTAGCTGATATCAT+TGG + chr1_1:63746514-63746533 Msa0035510:intron 40.0%
AACCAAAAAAAGAGTTGGGC+TGG + chr1_1:63746568-63746587 Msa0035510:CDS 40.0%
!!! TACCAGCCCAACTCTTTTTT+TGG - chr1_1:63746573-63746592 None:intergenic 40.0%
CTGTACTACTATTCAGCTCT+AGG + chr1_1:63746792-63746811 Msa0035510:CDS 40.0%
!! GACATGTGCAGTTTGATTTG+TGG + chr1_1:63746814-63746833 Msa0035510:CDS 40.0%
GGTGGGAAGAAATTGATGAA+AGG - chr1_1:63746999-63747018 None:intergenic 40.0%
GTTTAGGCAAAAGCTGGAAT+TGG + chr1_1:63747087-63747106 Msa0035510:intron 40.0%
CACTGTGAAATTAACAGCAG+TGG + chr1_1:63747157-63747176 Msa0035510:three_prime_UTR 40.0%
AGCAGTGGTACACTGTAAAT+AGG + chr1_1:63747172-63747191 Msa0035510:three_prime_UTR 40.0%
TTTGTTCCAAGGAAAAGGGT+TGG - chr1_1:63745427-63745446 None:intergenic 40.0%
! TGGGTTTGTTCCAAGGAAAA+GGG - chr1_1:63745431-63745450 None:intergenic 40.0%
!! ACAGTGTCGTTTGTTGTTGT+GGG - chr1_1:63745450-63745469 None:intergenic 40.0%
!! GCTTTGAAATTGGTGTCACA+TGG + chr1_1:63745842-63745861 Msa0035510:intron 40.0%
!! AAATTGGTGTCACATGGTGA+TGG + chr1_1:63745848-63745867 Msa0035510:intron 40.0%
! TGGTTTCATGGCCAATTTTC+AGG + chr1_1:63745920-63745939 Msa0035510:CDS 40.0%
! GAAATGGGGTACCTGAAAAT+TGG - chr1_1:63745934-63745953 None:intergenic 40.0%
AGCAAAGTAACGAGCTTCAA+GGG - chr1_1:63746079-63746098 None:intergenic 40.0%
AGCCTCAAGAAATTCACAAG+AGG - chr1_1:63746111-63746130 None:intergenic 40.0%
! TTCTTGAGGCTTTTGGTGAA+TGG + chr1_1:63746120-63746139 Msa0035510:CDS 40.0%
TTTGGTGAATGGTCTCTCAT+TGG + chr1_1:63746131-63746150 Msa0035510:CDS 40.0%
GACTCATCAAATCTGTGACT+AGG + chr1_1:63746166-63746185 Msa0035510:CDS 40.0%
CCTCTTAGCAATTCTCTGTA+GGG - chr1_1:63746290-63746309 None:intergenic 40.0%
ACCTCTTAGCAATTCTCTGT+AGG - chr1_1:63746291-63746310 None:intergenic 40.0%
AGAGGTCCCCTTTATTATGT+TGG + chr1_1:63746305-63746324 Msa0035510:CDS 40.0%
GAGGTCCCCTTTATTATGTT+GGG + chr1_1:63746306-63746325 Msa0035510:CDS 40.0%
! TGTTGAGTGCTATTGTGTTC+TGG + chr1_1:63746336-63746355 Msa0035510:CDS 40.0%
CTAGGTGTAGCTGATATCAT+TGG + chr1_1:63746514-63746533 Msa0035510:intron 40.0%
AACCAAAAAAAGAGTTGGGC+TGG + chr1_1:63746568-63746587 Msa0035510:CDS 40.0%
!!! TACCAGCCCAACTCTTTTTT+TGG - chr1_1:63746573-63746592 None:intergenic 40.0%
CTGTACTACTATTCAGCTCT+AGG + chr1_1:63746792-63746811 Msa0035510:CDS 40.0%
!! GACATGTGCAGTTTGATTTG+TGG + chr1_1:63746814-63746833 Msa0035510:CDS 40.0%
GGTGGGAAGAAATTGATGAA+AGG - chr1_1:63746999-63747018 None:intergenic 40.0%
GTTTAGGCAAAAGCTGGAAT+TGG + chr1_1:63747087-63747106 Msa0035510:intron 40.0%
CACTGTGAAATTAACAGCAG+TGG + chr1_1:63747157-63747176 Msa0035510:three_prime_UTR 40.0%
AGCAGTGGTACACTGTAAAT+AGG + chr1_1:63747172-63747191 Msa0035510:three_prime_UTR 40.0%
AAGTTCTCTCCAATCAGGTG+AGG - chr1_1:63745249-63745268 None:intergenic 45.0%
ACTGAGAGAGTGACAAGAGT+TGG - chr1_1:63745320-63745339 None:intergenic 45.0%
! GTGGGTTTGTTCCAAGGAAA+AGG - chr1_1:63745432-63745451 None:intergenic 45.0%
! GTTGTTGTGGGTTTGTTCCA+AGG - chr1_1:63745438-63745457 None:intergenic 45.0%
!! GACAGTGTCGTTTGTTGTTG+TGG - chr1_1:63745451-63745470 None:intergenic 45.0%
CAGCAAAGTAACGAGCTTCA+AGG - chr1_1:63746080-63746099 None:intergenic 45.0%
! CTCTCATTGGTTACTGATCC+AGG + chr1_1:63746144-63746163 Msa0035510:CDS 45.0%
GTCACAGATTTGATGAGTCC+TGG - chr1_1:63746165-63746184 None:intergenic 45.0%
CCCTACAGAGAATTGCTAAG+AGG + chr1_1:63746287-63746306 Msa0035510:intron 45.0%
TTCTGGCGTGAATCTCCAAT+TGG + chr1_1:63746353-63746372 Msa0035510:CDS 45.0%
TCTGGCGTGAATCTCCAATT+GGG + chr1_1:63746354-63746373 Msa0035510:CDS 45.0%
TCTAGGGAAATCCCTAGGAA+AGG - chr1_1:63746453-63746472 None:intergenic 45.0%
! AAGCTTCTAGGGAAATCCCT+AGG - chr1_1:63746458-63746477 None:intergenic 45.0%
! TGTGTCTTTTGTGGCAACAG+TGG + chr1_1:63746860-63746879 Msa0035510:CDS 45.0%
TCATCGACCACCTCAGTAAT+GGG - chr1_1:63746897-63746916 None:intergenic 45.0%
GTCACTGCCATAGTTACTAG+TGG - chr1_1:63746933-63746952 None:intergenic 45.0%
AAGCACGTTTAGGCAAAAGC+TGG + chr1_1:63747081-63747100 Msa0035510:intron 45.0%
ACAGTGCTACAAGCAGTGTT+TGG - chr1_1:63747143-63747162 None:intergenic 45.0%
AAGTTCTCTCCAATCAGGTG+AGG - chr1_1:63745249-63745268 None:intergenic 45.0%
ACTGAGAGAGTGACAAGAGT+TGG - chr1_1:63745320-63745339 None:intergenic 45.0%
! GTGGGTTTGTTCCAAGGAAA+AGG - chr1_1:63745432-63745451 None:intergenic 45.0%
! GTTGTTGTGGGTTTGTTCCA+AGG - chr1_1:63745438-63745457 None:intergenic 45.0%
!! GACAGTGTCGTTTGTTGTTG+TGG - chr1_1:63745451-63745470 None:intergenic 45.0%
CAGCAAAGTAACGAGCTTCA+AGG - chr1_1:63746080-63746099 None:intergenic 45.0%
! CTCTCATTGGTTACTGATCC+AGG + chr1_1:63746144-63746163 Msa0035510:CDS 45.0%
GTCACAGATTTGATGAGTCC+TGG - chr1_1:63746165-63746184 None:intergenic 45.0%
CCCTACAGAGAATTGCTAAG+AGG + chr1_1:63746287-63746306 Msa0035510:intron 45.0%
TTCTGGCGTGAATCTCCAAT+TGG + chr1_1:63746353-63746372 Msa0035510:CDS 45.0%
TCTGGCGTGAATCTCCAATT+GGG + chr1_1:63746354-63746373 Msa0035510:CDS 45.0%
TCTAGGGAAATCCCTAGGAA+AGG - chr1_1:63746453-63746472 None:intergenic 45.0%
! AAGCTTCTAGGGAAATCCCT+AGG - chr1_1:63746458-63746477 None:intergenic 45.0%
! TGTGTCTTTTGTGGCAACAG+TGG + chr1_1:63746860-63746879 Msa0035510:CDS 45.0%
TCATCGACCACCTCAGTAAT+GGG - chr1_1:63746897-63746916 None:intergenic 45.0%
GTCACTGCCATAGTTACTAG+TGG - chr1_1:63746933-63746952 None:intergenic 45.0%
AAGCACGTTTAGGCAAAAGC+TGG + chr1_1:63747081-63747100 Msa0035510:intron 45.0%
ACAGTGCTACAAGCAGTGTT+TGG - chr1_1:63747143-63747162 None:intergenic 45.0%
!!! TTTGTTTATTTTTTTTTTAA+TGG + chr1_1:63745805-63745824 Msa0035510:intron 5.0%
!!! TTTGTTTATTTTTTTTTTAA+TGG + chr1_1:63745805-63745824 Msa0035510:intron 5.0%
GGAGAATGGAAAGAGGTGAG+AGG - chr1_1:63745364-63745383 None:intergenic 50.0%
GTTCCAAGGAAAAGGGTTGG+AGG - chr1_1:63745424-63745443 None:intergenic 50.0%
CGGACACTACGATGTACTGA+AGG - chr1_1:63745489-63745508 None:intergenic 50.0%
CAACAGTGGCACCAACATTG+TGG - chr1_1:63745569-63745588 None:intergenic 50.0%
!! CACAATGTTGGTGCCACTGT+TGG + chr1_1:63745567-63745586 Msa0035510:CDS 50.0%
CTGGCGTGAATCTCCAATTG+GGG + chr1_1:63746355-63746374 Msa0035510:CDS 50.0%
TCCAATTGGGGTTGTTGCCT+TGG + chr1_1:63746367-63746386 Msa0035510:CDS 50.0%
GTTGCCTTGGCAATGATGTG+TGG + chr1_1:63746380-63746399 Msa0035510:CDS 50.0%
CCTTGGCAATGATGTGTGGA+GGG + chr1_1:63746384-63746403 Msa0035510:CDS 50.0%
CTTGGCAATGATGTGTGGAG+GGG + chr1_1:63746385-63746404 Msa0035510:CDS 50.0%
! GTCTTTTGTGGCAACAGTGG+TGG + chr1_1:63746863-63746882 Msa0035510:CDS 50.0%
!! GACCACCTCAGTAATGGGTA+GGG - chr1_1:63746892-63746911 None:intergenic 50.0%
GTCATCGACCACCTCAGTAA+TGG - chr1_1:63746898-63746917 None:intergenic 50.0%
GGAGAATGGAAAGAGGTGAG+AGG - chr1_1:63745364-63745383 None:intergenic 50.0%
GTTCCAAGGAAAAGGGTTGG+AGG - chr1_1:63745424-63745443 None:intergenic 50.0%
CGGACACTACGATGTACTGA+AGG - chr1_1:63745489-63745508 None:intergenic 50.0%
CAACAGTGGCACCAACATTG+TGG - chr1_1:63745569-63745588 None:intergenic 50.0%
!! CACAATGTTGGTGCCACTGT+TGG + chr1_1:63745567-63745586 Msa0035510:CDS 50.0%
CTGGCGTGAATCTCCAATTG+GGG + chr1_1:63746355-63746374 Msa0035510:CDS 50.0%
TCCAATTGGGGTTGTTGCCT+TGG + chr1_1:63746367-63746386 Msa0035510:CDS 50.0%
GTTGCCTTGGCAATGATGTG+TGG + chr1_1:63746380-63746399 Msa0035510:CDS 50.0%
CCTTGGCAATGATGTGTGGA+GGG + chr1_1:63746384-63746403 Msa0035510:CDS 50.0%
CTTGGCAATGATGTGTGGAG+GGG + chr1_1:63746385-63746404 Msa0035510:CDS 50.0%
! GTCTTTTGTGGCAACAGTGG+TGG + chr1_1:63746863-63746882 Msa0035510:CDS 50.0%
!! GACCACCTCAGTAATGGGTA+GGG - chr1_1:63746892-63746911 None:intergenic 50.0%
GTCATCGACCACCTCAGTAA+TGG - chr1_1:63746898-63746917 None:intergenic 50.0%
GCACGGAGGAGAATGGAAAG+AGG - chr1_1:63745371-63745390 None:intergenic 55.0%
TGGTGGTTGTTGCCGGTGAA+CGG - chr1_1:63745398-63745417 None:intergenic 55.0%
! AAAAGGGTTGGAGGTGGTGG+TGG - chr1_1:63745415-63745434 None:intergenic 55.0%
AGGAAAAGGGTTGGAGGTGG+TGG - chr1_1:63745418-63745437 None:intergenic 55.0%
CCAAGGAAAAGGGTTGGAGG+TGG - chr1_1:63745421-63745440 None:intergenic 55.0%
! CCACCTCCAACCCTTTTCCT+TGG + chr1_1:63745418-63745437 Msa0035510:CDS 55.0%
!! GGTGCCACTGTTGGTGTTCT+TGG + chr1_1:63745576-63745595 Msa0035510:CDS 55.0%
! GCCACTGTTGGTGTTCTTGG+CGG + chr1_1:63745579-63745598 Msa0035510:CDS 55.0%
!! TGGTGTCACATGGTGATGGC+AGG + chr1_1:63745852-63745871 Msa0035510:intron 55.0%
!! GGTGTCACATGGTGATGGCA+GGG + chr1_1:63745853-63745872 Msa0035510:intron 55.0%
GCAGGGTCTGAGCAGAAAAC+TGG + chr1_1:63745870-63745889 Msa0035510:intron 55.0%
GCCAAGGCAACAACCCCAAT+TGG - chr1_1:63746371-63746390 None:intergenic 55.0%
GCCTTGGCAATGATGTGTGG+AGG + chr1_1:63746383-63746402 Msa0035510:CDS 55.0%
CCCTCCACACATCATTGCCA+AGG - chr1_1:63746387-63746406 None:intergenic 55.0%
GCAATGATGTGTGGAGGGGA+TGG + chr1_1:63746389-63746408 Msa0035510:CDS 55.0%
GGAGTCCCTACCCATTACTG+AGG + chr1_1:63746884-63746903 Msa0035510:CDS 55.0%
GTCCCTACCCATTACTGAGG+TGG + chr1_1:63746887-63746906 Msa0035510:CDS 55.0%
!! CGACCACCTCAGTAATGGGT+AGG - chr1_1:63746893-63746912 None:intergenic 55.0%
GCACGGAGGAGAATGGAAAG+AGG - chr1_1:63745371-63745390 None:intergenic 55.0%
TGGTGGTTGTTGCCGGTGAA+CGG - chr1_1:63745398-63745417 None:intergenic 55.0%
! AAAAGGGTTGGAGGTGGTGG+TGG - chr1_1:63745415-63745434 None:intergenic 55.0%
AGGAAAAGGGTTGGAGGTGG+TGG - chr1_1:63745418-63745437 None:intergenic 55.0%
CCAAGGAAAAGGGTTGGAGG+TGG - chr1_1:63745421-63745440 None:intergenic 55.0%
! CCACCTCCAACCCTTTTCCT+TGG + chr1_1:63745418-63745437 Msa0035510:CDS 55.0%
!! GGTGCCACTGTTGGTGTTCT+TGG + chr1_1:63745576-63745595 Msa0035510:CDS 55.0%
! GCCACTGTTGGTGTTCTTGG+CGG + chr1_1:63745579-63745598 Msa0035510:CDS 55.0%
!! TGGTGTCACATGGTGATGGC+AGG + chr1_1:63745852-63745871 Msa0035510:intron 55.0%
!! GGTGTCACATGGTGATGGCA+GGG + chr1_1:63745853-63745872 Msa0035510:intron 55.0%
GCAGGGTCTGAGCAGAAAAC+TGG + chr1_1:63745870-63745889 Msa0035510:intron 55.0%
GCCAAGGCAACAACCCCAAT+TGG - chr1_1:63746371-63746390 None:intergenic 55.0%
GCCTTGGCAATGATGTGTGG+AGG + chr1_1:63746383-63746402 Msa0035510:CDS 55.0%
CCCTCCACACATCATTGCCA+AGG - chr1_1:63746387-63746406 None:intergenic 55.0%
GCAATGATGTGTGGAGGGGA+TGG + chr1_1:63746389-63746408 Msa0035510:CDS 55.0%
GGAGTCCCTACCCATTACTG+AGG + chr1_1:63746884-63746903 Msa0035510:CDS 55.0%
GTCCCTACCCATTACTGAGG+TGG + chr1_1:63746887-63746906 Msa0035510:CDS 55.0%
!! CGACCACCTCAGTAATGGGT+AGG - chr1_1:63746893-63746912 None:intergenic 55.0%
TGGTTGTTGCCGGTGAACGG+CGG - chr1_1:63745395-63745414 None:intergenic 60.0%
!! GAGGTGGTGGTGGTTGTTGC+CGG - chr1_1:63745405-63745424 None:intergenic 60.0%
GCCGCCAAGAACACCAACAG+TGG - chr1_1:63745583-63745602 None:intergenic 60.0%
TGGTTGTTGCCGGTGAACGG+CGG - chr1_1:63745395-63745414 None:intergenic 60.0%
!! GAGGTGGTGGTGGTTGTTGC+CGG - chr1_1:63745405-63745424 None:intergenic 60.0%
GCCGCCAAGAACACCAACAG+TGG - chr1_1:63745583-63745602 None:intergenic 60.0%
CGGCGGTGCACGGAGGAGAA+TGG - chr1_1:63745378-63745397 None:intergenic 70.0%
CTCCGTGCACCGCCGTTCAC+CGG + chr1_1:63745383-63745402 Msa0035510:CDS 70.0%
TGCCGGTGAACGGCGGTGCA+CGG - chr1_1:63745388-63745407 None:intergenic 70.0%
CGGCGGTGCACGGAGGAGAA+TGG - chr1_1:63745378-63745397 None:intergenic 70.0%
CTCCGTGCACCGCCGTTCAC+CGG + chr1_1:63745383-63745402 Msa0035510:CDS 70.0%
TGCCGGTGAACGGCGGTGCA+CGG - chr1_1:63745388-63745407 None:intergenic 70.0%
CGGTGAACGGCGGTGCACGG+AGG - chr1_1:63745385-63745404 None:intergenic 75.0%
CGGTGAACGGCGGTGCACGG+AGG - chr1_1:63745385-63745404 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 63745239 63747257 63745239 ID=Msa0035510;Name=Msa0035510
chr1_1 mRNA 63745239 63747257 63745239 ID=Msa0035510-mRNA-1;Parent=Msa0035510;Name=Msa0035510-mRNA-1;_AED=0.15;_eAED=0.16;_QI=109|0.83|0.85|1|0.5|0.57|7|177|315
chr1_1 exon 63745239 63745659 63745239 ID=Msa0035510-mRNA-1:exon:20330;Parent=Msa0035510-mRNA-1
chr1_1 exon 63745874 63745954 63745874 ID=Msa0035510-mRNA-1:exon:20331;Parent=Msa0035510-mRNA-1
chr1_1 exon 63746066 63746202 63746066 ID=Msa0035510-mRNA-1:exon:20332;Parent=Msa0035510-mRNA-1
chr1_1 exon 63746295 63746410 63746295 ID=Msa0035510-mRNA-1:exon:20333;Parent=Msa0035510-mRNA-1
chr1_1 exon 63746518 63746632 63746518 ID=Msa0035510-mRNA-1:exon:20334;Parent=Msa0035510-mRNA-1
chr1_1 exon 63746788 63747050 63746788 ID=Msa0035510-mRNA-1:exon:20335;Parent=Msa0035510-mRNA-1
chr1_1 exon 63747157 63747257 63747157 ID=Msa0035510-mRNA-1:exon:20336;Parent=Msa0035510-mRNA-1
chr1_1 five_prime_UTR 63745239 63745347 63745239 ID=Msa0035510-mRNA-1:five_prime_utr;Parent=Msa0035510-mRNA-1
chr1_1 CDS 63745348 63745659 63745348 ID=Msa0035510-mRNA-1:cds;Parent=Msa0035510-mRNA-1
chr1_1 CDS 63745874 63745954 63745874 ID=Msa0035510-mRNA-1:cds;Parent=Msa0035510-mRNA-1
chr1_1 CDS 63746066 63746202 63746066 ID=Msa0035510-mRNA-1:cds;Parent=Msa0035510-mRNA-1
chr1_1 CDS 63746295 63746410 63746295 ID=Msa0035510-mRNA-1:cds;Parent=Msa0035510-mRNA-1
chr1_1 CDS 63746518 63746632 63746518 ID=Msa0035510-mRNA-1:cds;Parent=Msa0035510-mRNA-1
chr1_1 CDS 63746788 63746974 63746788 ID=Msa0035510-mRNA-1:cds;Parent=Msa0035510-mRNA-1
chr1_1 three_prime_UTR 63746975 63747050 63746975 ID=Msa0035510-mRNA-1:three_prime_utr;Parent=Msa0035510-mRNA-1
chr1_1 three_prime_UTR 63747157 63747257 63747157 ID=Msa0035510-mRNA-1:three_prime_utr;Parent=Msa0035510-mRNA-1
Gene Sequence

>Msa0035510

ATGACTCTCTTATCCTCTCACCTCTTTCCATTCTCCTCCGTGCACCGCCGTTCACCGGCAACAACCACCACCACCTCCAACCCTTTTCCTTGGAACAAACCCACAACAACAAACGACACTGTCAAGTTTTTGTATTCTCCTTCAGTACATCGTAGTGTCCGTTTAGATGAAAGATTTGTAACAAGATTTATTGTCCCTGCAAATGCTCAAGATCTAATCCACAATGTTGGTGCCACTGTTGGTGTTCTTGGCGGCGCTTATGCTCTTGTTTTTTCTTTTGATGATCTAACTAGAAGAAACATCATTGATCAAGGTCTGAGCAGAAAACTGGTCCATATATTATCAGGATTGCTTTTTCTGGTTTCATGGCCAATTTTCAGGTACCCCATTTCTGATAGCAACTCCCTTGAAGCTCGTTACTTTGCTGCTTTTGTTCCTCTTGTGAATTTCTTGAGGCTTTTGGTGAATGGTCTCTCATTGGTTACTGATCCAGGACTCATCAAATCTGTGACTAGGAAAGGAGATCCAAAAGAATTGCTAAGAGGTCCCCTTTATTATGTTGGGATATTAATGTTGAGTGCTATTGTGTTCTGGCGTGAATCTCCAATTGGGGTTGTTGCCTTGGCAATGATGTGTGGAGGGGATGGTGTAGCTGATATCATTGGTAGAAGATATGGGTCAATGAAGATTCCTTACAACCAAAAAAAGAGTTGGGCTGGTAGCATAGCAATGCTTATATTTGGATTCTTGGTTTCAATTGGGATGCTGTACTACTATTCAGCTCTAGGACATGTGCAGTTTGATTTGTGGAACGTTGTGCCAAGAGTTGCTTTTGTGTCTTTTGTGGCAACAGTGGTGGAGTCCCTACCCATTACTGAGGTGGTCGATGACAACATTTCTGTTCCACTAGTAACTATGGCAGTGACTTTTTTAACTTTCCATCATTAA

Protein sequence

>Msa0035510

MTLLSSHLFPFSSVHRRSPATTTTTSNPFPWNKPTTTNDTVKFLYSPSVHRSVRLDERFVTRFIVPANAQDLIHNVGATVGVLGGAYALVFSFDDLTRRNIIDQGLSRKLVHILSGLLFLVSWPIFRYPISDSNSLEARYFAAFVPLVNFLRLLVNGLSLVTDPGLIKSVTRKGDPKELLRGPLYYVGILMLSAIVFWRESPIGVVALAMMCGGDGVADIIGRRYGSMKIPYNQKKSWAGSIAMLIFGFLVSIGMLYYYSALGHVQFDLWNVVPRVAFVSFVATVVESLPITEVVDDNISVPLVTMAVTFLTFHH*