AlfalfaGEDB | Msa0199160

M. sativa cultivar zhongmu-4 / Msa0199160

KEGG: K01807
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
PFAM: PF06026.17

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0199160	XP_003594616.2	94.915	295	12	2	1	292	1	295	0.0	543

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0199160	sp\|Q9FI13\|RPI4_ARATH	57.971	276	107	2	1	275	1	268	6.35e-109	320

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0199160	G7IMN1	94.915	295	12	2	1	292	1	295	0.0	543

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001420	Msa0199160	0.804672	1.930228e-49	-8.615850e-47
Msa0001510	Msa0199160	0.901161	3.545391e-78	-8.615850e-47
Msa0001540	Msa0199160	0.851265	9.930388e-61	-8.615850e-47
Msa0002110	Msa0199160	0.831261	1.844906e-55	-8.615850e-47
Msa0002690	Msa0199160	0.904453	1.208404e-79	-8.615850e-47
Msa0002700	Msa0199160	0.900182	9.460663e-78	-8.615850e-47
Msa0003340	Msa0199160	0.805870	1.083284e-49	-8.615850e-47
Msa0004180	Msa0199160	0.896745	2.746538e-76	-8.615850e-47
Msa0005190	Msa0199160	0.803470	3.432339e-49	-8.615850e-47
Msa0005500	Msa0199160	0.825589	4.315936e-54	-8.615850e-47

Showing 1 to 10 of 2,211 entries

Previous1 2 3 4 5…222Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0199160	MtrunA17_Chr2g0293571	94.915	295	12	2	1	292	1	295	0.0	543
Msa0199160	MtrunA17_Chr1g0208501	32.365	241	149	4	48	285	39	268	6.86e-30	114
Msa0199160	MtrunA17_Chr7g0273991	29.682	283	175	9	6	285	19	280	1.75e-28	110

Showing 1 to 3 of 3 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0199160	AT5G44520.1	57.971	276	107	2	1	275	1	268	6.45e-110	320
Msa0199160	AT5G44520.2	57.971	276	107	2	1	275	31	298	7.27e-110	321
Msa0199160	AT3G04790.1	30.104	289	179	8	3	285	5	276	7.84e-28	108
Msa0199160	AT2G01290.1	30.579	242	151	6	48	285	36	264	8.09e-25	100
Msa0199160	AT1G71100.1	30.453	243	157	5	48	286	32	266	1.54e-24	100

Showing 1 to 5 of 5 entries

Previous1Next

Find 94 sgRNAs with CRISPR-Local

Find 238 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCCTTGATAAAATTGA+TGG	0.403326	2_1:+18044003	Msa0199160:CDS
AAACCAGTACAAAGGTGGTC+TGG	0.488741	2_1:+18043208	Msa0199160:CDS
AAATTGACTGCAGATGTAGT+GGG	0.663977	2_1:+18044848	Msa0199160:CDS
AACTTACCAAGGCTTGGTAT+TGG	0.380544	2_1:-18043898	None:intergenic
AAGCCCTGTAGAAGAAGCTA+TGG	0.477415	2_1:-18041028	None:intergenic
AAGTGCAAGTGAAGCAGCAA+AGG	0.564860	2_1:+18042597	Msa0199160:CDS
AAGTGGCATGGTTGTAGGAT+TGG	0.446137	2_1:+18042263	Msa0199160:CDS
AATAATGAAGACTAGTTTAT+TGG	0.164453	2_1:-18043180	None:intergenic
ACATAGCATTGTCGCATAAC+AGG	0.381728	2_1:-18045088	None:intergenic
ACATCTCCAATACCAAGCCT+TGG	0.560116	2_1:+18043892	Msa0199160:CDS

Showing 1 to 10 of 94 entries

Previous1 2 3 4 5…10Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
GAATTCACCAACTTCTTTAT+TGG	+	chr2_1:18041056-18041075	Msa0199160:CDS	30.0%
CTTCTTTCCAATAAAGAAGT+TGG	-	chr2_1:18041066-18041085	None:intergenic	30.0%
TATTGGAAAGAAGAAGAAGA+AGG	+	chr2_1:18041073-18041092	Msa0199160:CDS	30.0%
GGCATCATTCTAACAAAATT+GGG	-	chr2_1:18041111-18041130	None:intergenic	30.0%
TTATGGAGAGCTTATGAATA+TGG	-	chr2_1:18041265-18041284	None:intergenic	30.0%
CACTTGTAGAACAACAAAAA+GGG	-	chr2_1:18042100-18042119	None:intergenic	30.0%
TCACTTGTAGAACAACAAAA+AGG	-	chr2_1:18042101-18042120	None:intergenic	30.0%
ATCAATTAAACTCAGAAAGG+AGG	-	chr2_1:18042387-18042406	None:intergenic	30.0%
ACAAATGCATCAATGTCAAA+TGG	-	chr2_1:18042560-18042579	None:intergenic	30.0%
ATTGATGCATTTGTTTATGC+AGG	+	chr2_1:18042566-18042585	Msa0199160:intron	30.0%

Showing 1 to 10 of 238 entries

Previous1 2 3 4 5…24Next

Chromosome	Type	Strat	End	Strand	Name
chr2_1	gene	18040942	18045224	18040942	ID=Msa0199160;Name=Msa0199160
chr2_1	mRNA	18040942	18045224	18040942	ID=Msa0199160-mRNA-1;Parent=Msa0199160;Name=Msa0199160-mRNA-1;_AED=0.15;_eAED=0.15;_QI=79\|1\|1\|1\|1\|1\|9\|350\|292
chr2_1	exon	18040942	18041185	18040942	ID=Msa0199160-mRNA-1:exon:7639;Parent=Msa0199160-mRNA-1
chr2_1	exon	18042246	18042373	18042246	ID=Msa0199160-mRNA-1:exon:7640;Parent=Msa0199160-mRNA-1
chr2_1	exon	18042588	18042657	18042588	ID=Msa0199160-mRNA-1:exon:7641;Parent=Msa0199160-mRNA-1
chr2_1	exon	18042960	18043064	18042960	ID=Msa0199160-mRNA-1:exon:7642;Parent=Msa0199160-mRNA-1
chr2_1	exon	18043164	18043259	18043164	ID=Msa0199160-mRNA-1:exon:7643;Parent=Msa0199160-mRNA-1
chr2_1	exon	18043339	18043395	18043339	ID=Msa0199160-mRNA-1:exon:7644;Parent=Msa0199160-mRNA-1
chr2_1	exon	18043796	18043913	18043796	ID=Msa0199160-mRNA-1:exon:7645;Parent=Msa0199160-mRNA-1
chr2_1	exon	18043992	18044058	18043992	ID=Msa0199160-mRNA-1:exon:7646;Parent=Msa0199160-mRNA-1
chr2_1	exon	18044802	18045224	18044802	ID=Msa0199160-mRNA-1:exon:7647;Parent=Msa0199160-mRNA-1
chr2_1	five_prime_UTR	18040942	18041020	18040942	ID=Msa0199160-mRNA-1:five_prime_utr;Parent=Msa0199160-mRNA-1
chr2_1	CDS	18041021	18041185	18041021	ID=Msa0199160-mRNA-1:cds;Parent=Msa0199160-mRNA-1
chr2_1	CDS	18042246	18042373	18042246	ID=Msa0199160-mRNA-1:cds;Parent=Msa0199160-mRNA-1
chr2_1	CDS	18042588	18042657	18042588	ID=Msa0199160-mRNA-1:cds;Parent=Msa0199160-mRNA-1
chr2_1	CDS	18042960	18043064	18042960	ID=Msa0199160-mRNA-1:cds;Parent=Msa0199160-mRNA-1
chr2_1	CDS	18043164	18043259	18043164	ID=Msa0199160-mRNA-1:cds;Parent=Msa0199160-mRNA-1
chr2_1	CDS	18043339	18043395	18043339	ID=Msa0199160-mRNA-1:cds;Parent=Msa0199160-mRNA-1
chr2_1	CDS	18043796	18043913	18043796	ID=Msa0199160-mRNA-1:cds;Parent=Msa0199160-mRNA-1
chr2_1	CDS	18043992	18044058	18043992	ID=Msa0199160-mRNA-1:cds;Parent=Msa0199160-mRNA-1
chr2_1	CDS	18044802	18044874	18044802	ID=Msa0199160-mRNA-1:cds;Parent=Msa0199160-mRNA-1
chr2_1	three_prime_UTR	18044875	18045224	18044875	ID=Msa0199160-mRNA-1:three_prime_utr;Parent=Msa0199160-mRNA-1

Gene Sequence

>Msa0199160

ATGGCTTCCATAGCTTCTTCTACAGGGCTTCTTCTGAATTCACCAACTTCTTTATTGGAAAGAAGAAGAAGAAGGAAAAGAATCAGTCCCAATTTTGTTAGAATGATGCCCACTCGCTCTTGTCTCGATGACACTTCTTCTCTCCTCCAAGCAGCTCAATACACTGTGGACACATACGTGAAAAGTGGCATGGTTGTAGGATTGGGGTCTGGTCATGCTTCTGGTATGGCCATTCAGCATTTAGGTCGCCAGCTTCGTCATGGTAATTTGAAAGACATAATAGGGATTCCCACGTCTGTTGCAAGTGCAAGTGAAGCAGCAAAGGCTGGGATTCCTTTGGATACCTACCAAGACAGTTCTCATATTGATATTGCATTTGATGATGCCGACGGTGTAGAAGAAGGGACATTTGTTGCTATAATTGGACGACGGAAATTGCAAAGTGAGGAATCCATAATCCAAGAGAAGTCCATACTGAATAACGCCAATAAACTAGTCTTCATTATTGAAGAAAACCAGTACAAAGGTGGTCTGGAAGGTTCTATTCCAGTTTTAATTCAGTCTCTCAACTGGTTGGCAACTGCTGAAGAGATTGACGATATGTTTCTTGGCGATGCCGAGGTGTGGAGAAGACCAGCTATTGGGCAAGCAGGTCCACTAGGAGGTGACTTTCCACTGGTCACAGGGGAAGGACATAATGTTCTTGATGTTATCTTCACATCTCCAATACCAAGCCTTGCTGAAGTAGCGAAAATCCTTGATAAAATTGATGGTGTTGCAGACCATGGTGTCATATCGAAAACCCCATGTACGGTGGTAATTGCATCTCCAAATGGGTTGAACGTTTTGGACAAATTGACTGCAGATGTAGTGGGCTAG

Protein sequence

>Msa0199160

MASIASSTGLLLNSPTSLLERRRRRKRISPNFVRMMPTRSCLDDTSSLLQAAQYTVDTYVKSGMVVGLGSGHASGMAIQHLGRQLRHGNLKDIIGIPTSVASASEAAKAGIPLDTYQDSSHIDIAFDDADGVEEGTFVAIIGRRKLQSEESIIQEKSILNNANKLVFIIEENQYKGGLEGSIPVLIQSLNWLATAEEIDDMFLGDAEVWRRPAIGQAGPLGGDFPLVTGEGHNVLDVIFTSPIPSLAEVAKILDKIDGVADHGVISKTPCTVVIASPNGLNVLDKLTADVVG*