AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0199160


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0199160 MtrunA17_Chr2g0293571 94.915 295 12 2 1 292 1 295 0.0 543
Msa0199160 MtrunA17_Chr1g0208501 32.365 241 149 4 48 285 39 268 6.86e-30 114
Msa0199160 MtrunA17_Chr7g0273991 29.682 283 175 9 6 285 19 280 1.75e-28 110
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0199160 AT5G44520.1 57.971 276 107 2 1 275 1 268 6.45e-110 320
Msa0199160 AT5G44520.2 57.971 276 107 2 1 275 31 298 7.27e-110 321
Msa0199160 AT3G04790.1 30.104 289 179 8 3 285 5 276 7.84e-28 108
Msa0199160 AT2G01290.1 30.579 242 151 6 48 285 36 264 8.09e-25 100
Msa0199160 AT1G71100.1 30.453 243 157 5 48 286 32 266 1.54e-24 100

Find 94 sgRNAs with CRISPR-Local

Find 238 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAATTCACCAACTTCTTTAT+TGG 0.125915 2_1:+18041056 Msa0199160:CDS
AATAATGAAGACTAGTTTAT+TGG 0.164453 2_1:-18043180 None:intergenic
TTACTAACATTTAAGAATTC+TGG 0.167956 2_1:-18045061 None:intergenic
GGGACATTTGTTGCTATAAT+TGG 0.176637 2_1:+18042999 Msa0199160:CDS
ACTAGCCTTCTCTTGGATTA+TGG 0.191456 2_1:-18043048 None:intergenic
GGGCATCATTCTAACAAAAT+TGG 0.210497 2_1:-18041109 None:intergenic
GGTAATTTGAAAGACATAAT+AGG 0.241252 2_1:+18042342 Msa0199160:CDS
GTAAATGAGAGATTAAAATT+AGG 0.251296 2_1:+18044920 Msa0199160:three_prime_UTR
GAGATTGACGATATGTTTCT+TGG 0.281572 2_1:+18043363 Msa0199160:CDS
TTTATTGGCGTTATTCAGTA+TGG 0.286944 2_1:-18043165 None:intergenic
TCCAAATGGGTTGAACGTTT+TGG 0.288932 2_1:+18044823 Msa0199160:CDS
TTGGGGTCTGGTCATGCTTC+TGG 0.291464 2_1:+18042282 Msa0199160:CDS
TCTTATATCTCTCTCCTTTG+TGG 0.318274 2_1:+18044891 Msa0199160:three_prime_UTR
TCCAAAACGTTCAACCCATT+TGG 0.340232 2_1:-18044824 None:intergenic
CAATGCTATGTAACTCTCTT+TGG 0.347338 2_1:+18045100 Msa0199160:three_prime_UTR
CTTACAGACTGAATTAAAAC+TGG 0.355408 2_1:-18043242 None:intergenic
GGTATGGCCATTCAGCATTT+AGG 0.364770 2_1:+18042303 Msa0199160:CDS
GTAATTTGAAAGACATAATA+GGG 0.371319 2_1:+18042343 Msa0199160:CDS
TAAATGAGAGATTAAAATTA+GGG 0.375557 2_1:+18044921 Msa0199160:three_prime_UTR
AACTTACCAAGGCTTGGTAT+TGG 0.380544 2_1:-18043898 None:intergenic
ACATAGCATTGTCGCATAAC+AGG 0.381728 2_1:-18045088 None:intergenic
AAAATCCTTGATAAAATTGA+TGG 0.403326 2_1:+18044003 Msa0199160:CDS
CTTCTTTCCAATAAAGAAGT+TGG 0.407706 2_1:-18041063 None:intergenic
GTGAAAAGTGGCATGGTTGT+AGG 0.420807 2_1:+18042258 Msa0199160:CDS
GTGGTAATTGCATCTCCAAA+TGG 0.427259 2_1:+18044809 Msa0199160:CDS
AGTGGCATGGTTGTAGGATT+GGG 0.431364 2_1:+18042264 Msa0199160:CDS
GGCATCATTCTAACAAAATT+GGG 0.432006 2_1:-18041108 None:intergenic
TATAACAACTAGCCTTCTCT+TGG 0.436447 2_1:-18043055 None:intergenic
ATCATGTTGAAATAGAAAAT+CGG 0.444502 2_1:-18045019 None:intergenic
AAGTGGCATGGTTGTAGGAT+TGG 0.446137 2_1:+18042263 Msa0199160:CDS
TCAAATTACCATGACGAAGC+TGG 0.449566 2_1:-18042329 None:intergenic
GCTTCCATAGCTTCTTCTAC+AGG 0.450670 2_1:+18041024 Msa0199160:CDS
AGTGGATAAGGGAGGGAGGT+AGG 0.452688 2_1:-18040953 None:intergenic
CTTCCAGACCACCTTTGTAC+TGG 0.454820 2_1:-18043211 None:intergenic
TGTGGAGAAGACCAGCTATT+GGG 0.457431 2_1:+18043797 Msa0199160:CDS
GCAAGTGAAGCAGCAAAGGC+TGG 0.460488 2_1:+18042601 Msa0199160:CDS
GTCTGGTCATGCTTCTGGTA+TGG 0.462156 2_1:+18042287 Msa0199160:CDS
AGCAAAGGCTGGGATTCCTT+TGG 0.462918 2_1:+18042612 Msa0199160:CDS
ATGGTTGTAGGATTGGGGTC+TGG 0.471721 2_1:+18042270 Msa0199160:CDS
AAGCCCTGTAGAAGAAGCTA+TGG 0.477415 2_1:-18041028 None:intergenic
GGACCTGCTTGCCCAATAGC+TGG 0.480422 2_1:-18043808 None:intergenic
CTTCCATAGCTTCTTCTACA+GGG 0.481289 2_1:+18041025 Msa0199160:CDS
AAACCAGTACAAAGGTGGTC+TGG 0.488741 2_1:+18043208 Msa0199160:CDS
TATTGGAAAGAAGAAGAAGA+AGG 0.488817 2_1:+18041073 Msa0199160:CDS
GTGTGGAGAAGACCAGCTAT+TGG 0.489328 2_1:+18043796 Msa0199160:CDS
TGGTAATTGCATCTCCAAAT+GGG 0.506217 2_1:+18044810 Msa0199160:CDS
CAGTGTATTGAGCTGCTTGG+AGG 0.509994 2_1:-18041164 None:intergenic
GACTGCAGATGTAGTGGGCT+AGG 0.512581 2_1:+18044853 Msa0199160:CDS
TTCCTTGCAGCTCAACTGGT+TGG 0.513739 2_1:+18043329 Msa0199160:intron
GTGTGAGAATTGAACATCAA+TGG 0.520558 2_1:+18041002 Msa0199160:exon
TCTATTTCAACATGATGTCA+TGG 0.523009 2_1:+18045026 Msa0199160:three_prime_UTR
AGACCAGCTATTGGGCAAGC+AGG 0.523384 2_1:+18043805 Msa0199160:CDS
GATGCCGACGGTGTAGAAGA+AGG 0.526194 2_1:+18042978 Msa0199160:CDS
GGTGACTTTCCACTGGTCAC+AGG 0.529692 2_1:+18043838 Msa0199160:CDS
AGGCAGAACTTACCAAGGCT+TGG 0.536554 2_1:-18043904 None:intergenic
TATGTTTCTTGGCGATGCCG+AGG 0.557716 2_1:+18043374 Msa0199160:CDS
TTTCCACTGGTCACAGGGGA+AGG 0.560023 2_1:+18043844 Msa0199160:CDS
ACATCTCCAATACCAAGCCT+TGG 0.560116 2_1:+18043892 Msa0199160:CDS
CTGGCGACCTAAATGCTGAA+TGG 0.561942 2_1:-18042310 None:intergenic
AAGTGCAAGTGAAGCAGCAA+AGG 0.564860 2_1:+18042597 Msa0199160:CDS
CAAGTGAAGCAGCAAAGGCT+GGG 0.565259 2_1:+18042602 Msa0199160:CDS
ATTGGGCAAGCAGGTCCACT+AGG 0.571854 2_1:+18043814 Msa0199160:CDS
CAAATTGACTGCAGATGTAG+TGG 0.576102 2_1:+18044847 Msa0199160:CDS
GTGACTTTCCACTGGTCACA+GGG 0.576961 2_1:+18043839 Msa0199160:CDS
CAGTACAAAGGTGGTCTGGA+AGG 0.578306 2_1:+18043212 Msa0199160:CDS
ATGCCGACGGTGTAGAAGAA+GGG 0.581558 2_1:+18042979 Msa0199160:CDS
TGCACACATGAGAACTGTCT+TGG 0.590935 2_1:-18042642 None:intergenic
TGTCCCTTCTTCTACACCGT+CGG 0.593219 2_1:-18042982 None:intergenic
GTGGACACATACGTGAAAAG+TGG 0.598925 2_1:+18042246 Msa0199160:CDS
ATACAGTGTATTGAGCTGCT+TGG 0.600416 2_1:-18041167 None:intergenic
TTAGGTCGCCAGCTTCGTCA+TGG 0.602568 2_1:+18042321 Msa0199160:CDS
ACTAGGAGGTGACTTTCCAC+TGG 0.606323 2_1:+18043831 Msa0199160:CDS
AGTTGCGCGTGTGTGCATGT+AGG 0.606759 2_1:-18044996 None:intergenic
GGAATCCATAATCCAAGAGA+AGG 0.609640 2_1:+18043043 Msa0199160:CDS
TGTCCTTCCCCTGTGACCAG+TGG 0.609659 2_1:-18043847 None:intergenic
CTGTCTTGGTAGGTATCCAA+AGG 0.609675 2_1:-18042628 None:intergenic
TAGGGATGTTACACTTACAG+TGG 0.619328 2_1:+18044939 Msa0199160:three_prime_UTR
GTCATCGAGACAAGAGCGAG+TGG 0.625671 2_1:-18041130 None:intergenic
GTGGCATGGTTGTAGGATTG+GGG 0.627903 2_1:+18042265 Msa0199160:CDS
ATTGAAGAAAACCAGTACAA+AGG 0.633072 2_1:+18043200 Msa0199160:CDS
TCATTTACATTCATCCACAA+AGG 0.640250 2_1:-18044905 None:intergenic
CACATGAGAACTGTCTTGGT+AGG 0.650509 2_1:-18042638 None:intergenic
AGTGGAAAGTCACCTCCTAG+TGG 0.652713 2_1:-18043829 None:intergenic
TTTGTAATGCAGATGTACGG+TGG 0.655215 2_1:+18044790 Msa0199160:intron
GGGCAAGCAGGTCCACTAGG+AGG 0.661196 2_1:+18043817 Msa0199160:CDS
GAAGAAAACCAGTACAAAGG+TGG 0.661605 2_1:+18043203 Msa0199160:CDS
TCATCGAGACAAGAGCGAGT+GGG 0.662888 2_1:-18041129 None:intergenic
AAATTGACTGCAGATGTAGT+GGG 0.663977 2_1:+18044848 Msa0199160:CDS
TTGTTGCTATAATTGGACGA+CGG 0.667250 2_1:+18043006 Msa0199160:CDS
ACGACGGAAATTGCAAAGTG+AGG 0.672279 2_1:+18043022 Msa0199160:CDS
ATTGCATTTGATGATGCCGA+CGG 0.678766 2_1:+18042966 Msa0199160:CDS
ATTGATGGTGTTGCAGACCA+TGG 0.679648 2_1:+18044018 Msa0199160:CDS
CACATACGTGAAAAGTGGCA+TGG 0.683635 2_1:+18042251 Msa0199160:CDS
TGACTTTCCACTGGTCACAG+GGG 0.738162 2_1:+18043840 Msa0199160:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTTAATTACATTTAAATTAT+GGG + chr2_1:18041765-18041784 Msa0199160:intron 10.0%
!!! TAAAAAAGTAAATTTAAGTT+TGG + chr2_1:18042843-18042862 Msa0199160:intron 10.0%
!!! TTTAATATTTTTGTCTTAAA+AGG - chr2_1:18044241-18044260 None:intergenic 10.0%
!!! TTTTTTTCAATTAAGATTGT+AGG + chr2_1:18041551-18041570 Msa0199160:intron 15.0%
!!! TTTTTTCAATTAAGATTGTA+GGG + chr2_1:18041552-18041571 Msa0199160:intron 15.0%
!! GGTTAATTACATTTAAATTA+TGG + chr2_1:18041764-18041783 Msa0199160:intron 15.0%
!! TAGATATAATTGTAATGAAT+AGG - chr2_1:18043754-18043773 None:intergenic 15.0%
!! TCTAATTATATAAAAACAAC+AGG - chr2_1:18044293-18044312 None:intergenic 15.0%
!! TAAATGAGAGATTAAAATTA+GGG + chr2_1:18044921-18044940 Msa0199160:three_prime_UTR 15.0%
!! TGTATTCATATAAGCTATTA+TGG - chr2_1:18041282-18041301 None:intergenic 20.0%
!! TTAATTCTTAGTTGTGTTAT+TGG + chr2_1:18041312-18041331 Msa0199160:intron 20.0%
!! AAATATGTTACTGTTCAAAT+AGG + chr2_1:18041359-18041378 Msa0199160:intron 20.0%
!! TTATTTCCATGAGTATATAA+TGG - chr2_1:18041646-18041665 None:intergenic 20.0%
!! TAATTACAACGTTCAAATTT+AGG + chr2_1:18041715-18041734 Msa0199160:intron 20.0%
!! TAAATGTAATTAACCACTAT+AGG - chr2_1:18041759-18041778 None:intergenic 20.0%
!!! TAATCATTTTGTTAAGAAAC+AGG + chr2_1:18042002-18042021 Msa0199160:intron 20.0%
!!! AATCATTTTGTTAAGAAACA+GGG + chr2_1:18042003-18042022 Msa0199160:intron 20.0%
!!! TTTAGATATGTGTTGTTATT+TGG + chr2_1:18042220-18042239 Msa0199160:intron 20.0%
!! GTAATTTGAAAGACATAATA+GGG + chr2_1:18042343-18042362 Msa0199160:CDS 20.0%
!! TATATCAATTAAACTCAGAA+AGG - chr2_1:18042390-18042409 None:intergenic 20.0%
!! TGAGTTTAATTGATATACAT+TGG + chr2_1:18042393-18042412 Msa0199160:intron 20.0%
!!! GATATTTTTTTTTTCCATAC+AGG + chr2_1:18042422-18042441 Msa0199160:intron 20.0%
!! ATATCTTGATATGTAAAGTT+AGG + chr2_1:18042866-18042885 Msa0199160:intron 20.0%
!!! AATAATGAAGACTAGTTTAT+TGG - chr2_1:18043183-18043202 None:intergenic 20.0%
!! TTTATCAACAAAATGTTTCT+TGG + chr2_1:18043472-18043491 Msa0199160:intron 20.0%
!!! TTGTTTCTCTTTGTATAATA+AGG + chr2_1:18043774-18043793 Msa0199160:intron 20.0%
!! AAAATCCTTGATAAAATTGA+TGG + chr2_1:18044003-18044022 Msa0199160:CDS 20.0%
!!! AACTTTTATTTTATGCTCTT+TGG + chr2_1:18044075-18044094 Msa0199160:intron 20.0%
!! TAGAACTTCTTAACAAATTT+CGG + chr2_1:18044309-18044328 Msa0199160:intron 20.0%
!!! GTATATTTTATCCCTTATTT+CGG + chr2_1:18044508-18044527 Msa0199160:intron 20.0%
!! GTAAATGAGAGATTAAAATT+AGG + chr2_1:18044920-18044939 Msa0199160:three_prime_UTR 20.0%
!! ATCATGTTGAAATAGAAAAT+CGG - chr2_1:18045022-18045041 None:intergenic 20.0%
!! TTACTAACATTTAAGAATTC+TGG - chr2_1:18045064-18045083 None:intergenic 20.0%
!!! AACTTCTTTTTAGTGGATAA+GGG - chr2_1:18040967-18040986 None:intergenic 25.0%
!!! TAACTTCTTTTTAGTGGATA+AGG - chr2_1:18040968-18040987 None:intergenic 25.0%
!! TTCATCTAACTTCTTTTTAG+TGG - chr2_1:18040974-18040993 None:intergenic 25.0%
! CAAATAGGCTAAAAAAATAG+TGG + chr2_1:18041374-18041393 Msa0199160:intron 25.0%
! CAAAAACCATTATATACTCA+TGG + chr2_1:18041637-18041656 Msa0199160:intron 25.0%
! AAGACATAAATTTGAGCTTA+TGG - chr2_1:18041670-18041689 None:intergenic 25.0%
! AATTAACCATAATTTGAACG+CGG - chr2_1:18041700-18041719 None:intergenic 25.0%
! GTTCAAATAAGTGCTTAATT+AGG - chr2_1:18041866-18041885 None:intergenic 25.0%
!! AAATATTTTGCGAAAAGATG+TGG - chr2_1:18041897-18041916 None:intergenic 25.0%
!!! AGTTTTGATAAATGTTGCAA+AGG - chr2_1:18042053-18042072 None:intergenic 25.0%
! TCATGTTTACTTATTATGCT+TGG + chr2_1:18042163-18042182 Msa0199160:intron 25.0%
! CATTCATCTTCCAATTAAAT+GGG - chr2_1:18042195-18042214 None:intergenic 25.0%
! TCATTCATCTTCCAATTAAA+TGG - chr2_1:18042196-18042215 None:intergenic 25.0%
! GGTAATTTGAAAGACATAAT+AGG + chr2_1:18042342-18042361 Msa0199160:CDS 25.0%
! CAAGAAATACTCAACATTAA+AGG - chr2_1:18042693-18042712 None:intergenic 25.0%
!!! TTGAGTATTTCTTGTTTTAG+AGG + chr2_1:18042699-18042718 Msa0199160:intron 25.0%
!!! TGAGTATTTCTTGTTTTAGA+GGG + chr2_1:18042700-18042719 Msa0199160:intron 25.0%
! AGTGTAGATTCATTTGATAT+TGG + chr2_1:18042927-18042946 Msa0199160:intron 25.0%
! AAGAAAAACTCAGAAAAAGA+GGG - chr2_1:18043413-18043432 None:intergenic 25.0%
! AAGAAATTGTTAGATCTGAT+TGG + chr2_1:18043445-18043464 Msa0199160:intron 25.0%
!! AAATCATTTTACACTGATAG+TGG - chr2_1:18043578-18043597 None:intergenic 25.0%
! TATTTCTTAATTGATCCAAG+AGG + chr2_1:18043670-18043689 Msa0199160:intron 25.0%
! ATTAATGCAGAAAAACAAGA+GGG - chr2_1:18043707-18043726 None:intergenic 25.0%
! AATTAATGCAGAAAAACAAG+AGG - chr2_1:18043708-18043727 None:intergenic 25.0%
!!! TTATTTTATGCTCTTTGGAT+AGG + chr2_1:18044080-18044099 Msa0199160:intron 25.0%
! ACTCATGGAACTAAATAAAT+AGG - chr2_1:18044608-18044627 None:intergenic 25.0%
! ACATCTGCATTACAAAATAA+TGG - chr2_1:18044786-18044805 None:intergenic 25.0%
!! TATTTTGTAATGCAGATGTA+CGG + chr2_1:18044787-18044806 Msa0199160:intron 25.0%
GAATTCACCAACTTCTTTAT+TGG + chr2_1:18041056-18041075 Msa0199160:CDS 30.0%
CTTCTTTCCAATAAAGAAGT+TGG - chr2_1:18041066-18041085 None:intergenic 30.0%
TATTGGAAAGAAGAAGAAGA+AGG + chr2_1:18041073-18041092 Msa0199160:CDS 30.0%
GGCATCATTCTAACAAAATT+GGG - chr2_1:18041111-18041130 None:intergenic 30.0%
TTATGGAGAGCTTATGAATA+TGG - chr2_1:18041265-18041284 None:intergenic 30.0%
CACTTGTAGAACAACAAAAA+GGG - chr2_1:18042100-18042119 None:intergenic 30.0%
TCACTTGTAGAACAACAAAA+AGG - chr2_1:18042101-18042120 None:intergenic 30.0%
!! TTTGTTGTTCTACAAGTGAA+TGG + chr2_1:18042102-18042121 Msa0199160:intron 30.0%
! TTGTTGTTCTACAAGTGAAT+GGG + chr2_1:18042103-18042122 Msa0199160:intron 30.0%
! TTGGTGATTACCCATTTAAT+TGG + chr2_1:18042182-18042201 Msa0199160:intron 30.0%
!! GATATGTGTTGTTATTTGGT+AGG + chr2_1:18042224-18042243 Msa0199160:intron 30.0%
ATCAATTAAACTCAGAAAGG+AGG - chr2_1:18042387-18042406 None:intergenic 30.0%
! AAAATCGTCGGCATATTTTA+GGG + chr2_1:18042512-18042531 Msa0199160:intron 30.0%
ACAAATGCATCAATGTCAAA+TGG - chr2_1:18042560-18042579 None:intergenic 30.0%
ATTGATGCATTTGTTTATGC+AGG + chr2_1:18042566-18042585 Msa0199160:intron 30.0%
GTAAGAGATTTCTTCTCTTT+AGG - chr2_1:18042777-18042796 None:intergenic 30.0%
CTCTATCAAAACATTTATCG+TGG - chr2_1:18042812-18042831 None:intergenic 30.0%
TTTATTGGCGTTATTCAGTA+TGG - chr2_1:18043168-18043187 None:intergenic 30.0%
ATTGAAGAAAACCAGTACAA+AGG + chr2_1:18043200-18043219 Msa0199160:CDS 30.0%
CTTACAGACTGAATTAAAAC+TGG - chr2_1:18043245-18043264 None:intergenic 30.0%
GAAGAAAAACTCAGAAAAAG+AGG - chr2_1:18043414-18043433 None:intergenic 30.0%
AAGTTATCATCTGATCACAT+TGG + chr2_1:18043599-18043618 Msa0199160:intron 30.0%
TCTCTTTGTATAATAAGGTG+TGG + chr2_1:18043779-18043798 Msa0199160:intron 30.0%
! CAACACCATCAATTTTATCA+AGG - chr2_1:18044011-18044030 None:intergenic 30.0%
AAGTTGAGAGAGAAAACTAA+CGG - chr2_1:18044060-18044079 None:intergenic 30.0%
TTTGCTTGATTTCACGATTT+AGG - chr2_1:18044344-18044363 None:intergenic 30.0%
!! GAGATCTTTTGAAAACAAAG+AGG + chr2_1:18044466-18044485 Msa0199160:intron 30.0%
! AAAACAAAGAGGTGCAAAAA+GGG + chr2_1:18044477-18044496 Msa0199160:intron 30.0%
TTTGGCAAAAAGAAATACGA+AGG + chr2_1:18044533-18044552 Msa0199160:intron 30.0%
CAAGATGTTTAAAAGTGACT+AGG - chr2_1:18044653-18044672 None:intergenic 30.0%
GTTCTACTAAATTATCGCAT+TGG + chr2_1:18044672-18044691 Msa0199160:intron 30.0%
TCATTTACATTCATCCACAA+AGG - chr2_1:18044908-18044927 None:intergenic 30.0%
! ATCAACAATAACGAGTTTTG+CGG + chr2_1:18044966-18044985 Msa0199160:three_prime_UTR 30.0%
TCTATTTCAACATGATGTCA+TGG + chr2_1:18045026-18045045 Msa0199160:three_prime_UTR 30.0%
!! TCTTTTTAGTGGATAAGGGA+GGG - chr2_1:18040963-18040982 None:intergenic 35.0%
!! TTCTTTTTAGTGGATAAGGG+AGG - chr2_1:18040964-18040983 None:intergenic 35.0%
GTGTGAGAATTGAACATCAA+TGG + chr2_1:18041002-18041021 Msa0199160:exon 35.0%
GGGCATCATTCTAACAAAAT+TGG - chr2_1:18041112-18041131 None:intergenic 35.0%
CTGTTTGAACTGGTATGAAA+TGG - chr2_1:18041236-18041255 None:intergenic 35.0%
TAAGCTAGCAGATGAACTTA+TGG + chr2_1:18041405-18041424 Msa0199160:intron 35.0%
AAGCTAGCTGATTGAATTTG+TGG + chr2_1:18041447-18041466 Msa0199160:intron 35.0%
CTGATTGAATTTGTGGTGTT+TGG + chr2_1:18041454-18041473 Msa0199160:intron 35.0%
GTGGTGTTTGGTAAAATTAG+CGG + chr2_1:18041466-18041485 Msa0199160:intron 35.0%
CTTATCAAACAGACCTATAG+TGG + chr2_1:18041743-18041762 Msa0199160:intron 35.0%
ATTAACCACGAATTTGAGCA+TGG - chr2_1:18041794-18041813 None:intergenic 35.0%
ATGCTCAAATTCGTGGTTAA+TGG + chr2_1:18041793-18041812 Msa0199160:intron 35.0%
ATTCGTGGTTAATGGAGTAT+TGG + chr2_1:18041801-18041820 Msa0199160:intron 35.0%
TTCATCAAAGAATAGCACGA+AGG - chr2_1:18042029-18042048 None:intergenic 35.0%
!! ATGTGTTGTTATTTGGTAGG+TGG + chr2_1:18042227-18042246 Msa0199160:intron 35.0%
TAGAAAATTGACTGCCTGTA+TGG - chr2_1:18042439-18042458 None:intergenic 35.0%
TTCACCATGTAGAAAATCGT+CGG + chr2_1:18042500-18042519 Msa0199160:intron 35.0%
! GAAAATCGTCGGCATATTTT+AGG + chr2_1:18042511-18042530 Msa0199160:intron 35.0%
!! ATCAATGTCAAATGGATTGG+TGG - chr2_1:18042552-18042571 None:intergenic 35.0%
TGCATCAATGTCAAATGGAT+TGG - chr2_1:18042555-18042574 None:intergenic 35.0%
!!! TTCTTGTTTTAGAGGGTACT+TGG + chr2_1:18042707-18042726 Msa0199160:intron 35.0%
GAATAGTATACAAGGCTTTC+TGG - chr2_1:18042740-18042759 None:intergenic 35.0%
! AAAGCCTTGTATACTATTCC+TGG + chr2_1:18042741-18042760 Msa0199160:intron 35.0%
TTCACCAGGAATAGTATACA+AGG - chr2_1:18042748-18042767 None:intergenic 35.0%
!! TCTTTAGGAAACTTTTCACC+AGG - chr2_1:18042762-18042781 None:intergenic 35.0%
! GGGACATTTGTTGCTATAAT+TGG + chr2_1:18042999-18043018 Msa0199160:CDS 35.0%
TTGTTGCTATAATTGGACGA+CGG + chr2_1:18043006-18043025 Msa0199160:CDS 35.0%
!! TATAACAACTAGCCTTCTCT+TGG - chr2_1:18043058-18043077 None:intergenic 35.0%
GAGATTGACGATATGTTTCT+TGG + chr2_1:18043363-18043382 Msa0199160:CDS 35.0%
ATCGTACAAAGTTGAATGAG+TGG - chr2_1:18043555-18043574 None:intergenic 35.0%
AGTTGAGAGAGAAAACTAAC+GGG - chr2_1:18044059-18044078 None:intergenic 35.0%
! TTTTATGCTCTTTGGATAGG+TGG + chr2_1:18044083-18044102 Msa0199160:intron 35.0%
TCAAGCAAAGTTCATCAGTA+AGG + chr2_1:18044355-18044374 Msa0199160:intron 35.0%
TTGAGAAGCTAATCCAAACT+GGG - chr2_1:18044381-18044400 None:intergenic 35.0%
ATTGAGAAGCTAATCCAAAC+TGG - chr2_1:18044382-18044401 None:intergenic 35.0%
! GAAAACAAAGAGGTGCAAAA+AGG + chr2_1:18044476-18044495 Msa0199160:intron 35.0%
! TTATCCCTTATTTCGGCATT+TGG + chr2_1:18044515-18044534 Msa0199160:intron 35.0%
TTTGCCAAATGCCGAAATAA+GGG - chr2_1:18044522-18044541 None:intergenic 35.0%
! TTTTGCCAAATGCCGAAATA+AGG - chr2_1:18044523-18044542 None:intergenic 35.0%
TTGCAATTACATCAGACTTC+AGG - chr2_1:18044585-18044604 None:intergenic 35.0%
TCCATGAGTATAACATAAGC+AGG + chr2_1:18044619-18044638 Msa0199160:intron 35.0%
TCCTGCTTATGTTATACTCA+TGG - chr2_1:18044623-18044642 None:intergenic 35.0%
!! CCTTTGTTTCTTTTGCTTCT+GGG - chr2_1:18044719-18044738 None:intergenic 35.0%
!! TCCTTTGTTTCTTTTGCTTC+TGG - chr2_1:18044720-18044739 None:intergenic 35.0%
GCAAAAGAAACAAAGGAAAG+TGG + chr2_1:18044723-18044742 Msa0199160:intron 35.0%
TGGTAATTGCATCTCCAAAT+GGG + chr2_1:18044810-18044829 Msa0199160:CDS 35.0%
AAATTGACTGCAGATGTAGT+GGG + chr2_1:18044848-18044867 Msa0199160:CDS 35.0%
TCTTATATCTCTCTCCTTTG+TGG + chr2_1:18044891-18044910 Msa0199160:three_prime_UTR 35.0%
CAATGCTATGTAACTCTCTT+TGG + chr2_1:18045100-18045119 Msa0199160:three_prime_UTR 35.0%
CTTCCATAGCTTCTTCTACA+GGG + chr2_1:18041025-18041044 Msa0199160:CDS 40.0%
ATACAGTGTATTGAGCTGCT+TGG - chr2_1:18041170-18041189 None:intergenic 40.0%
ATGGCATAAGCTGTTTGAAC+TGG - chr2_1:18041246-18041265 None:intergenic 40.0%
CAGTTACCGCGTTCAAATTA+TGG + chr2_1:18041691-18041710 Msa0199160:intron 40.0%
!! ATGGAGTATTGGAGTTACGT+TGG + chr2_1:18041812-18041831 Msa0199160:intron 40.0%
TCAAATTACCATGACGAAGC+TGG - chr2_1:18042332-18042351 None:intergenic 40.0%
! CAGGCAGTCAATTTTCTACA+TGG + chr2_1:18042441-18042460 Msa0199160:intron 40.0%
! TATGCCGACGATTTTCTACA+TGG - chr2_1:18042507-18042526 None:intergenic 40.0%
!! ATTGCATTTGATGATGCCGA+CGG + chr2_1:18042966-18042985 Msa0199160:CDS 40.0%
GGAATCCATAATCCAAGAGA+AGG + chr2_1:18043043-18043062 Msa0199160:CDS 40.0%
!! ACTAGCCTTCTCTTGGATTA+TGG - chr2_1:18043051-18043070 None:intergenic 40.0%
GAAGAAAACCAGTACAAAGG+TGG + chr2_1:18043203-18043222 Msa0199160:CDS 40.0%
! AATTTTCCTTGCAGCTCAAC+TGG + chr2_1:18043325-18043344 Msa0199160:intron 40.0%
AGGGAATGTATAGCAAACCT+CGG - chr2_1:18043394-18043413 None:intergenic 40.0%
AGGGACATTAGAAAACCTCT+TGG - chr2_1:18043688-18043707 None:intergenic 40.0%
! AACTTACCAAGGCTTGGTAT+TGG - chr2_1:18043901-18043920 None:intergenic 40.0%
ATACGCAACATCTCAATTGC+AGG - chr2_1:18043927-18043946 None:intergenic 40.0%
GTTGAGAGAGAAAACTAACG+GGG - chr2_1:18044058-18044077 None:intergenic 40.0%
TGGTTGACAATCACACTCAT+TGG + chr2_1:18044103-18044122 Msa0199160:intron 40.0%
CCCAGAAGCAAAAGAAACAA+AGG + chr2_1:18044716-18044735 Msa0199160:intron 40.0%
TTTGTAATGCAGATGTACGG+TGG + chr2_1:18044790-18044809 Msa0199160:intron 40.0%
GTGGTAATTGCATCTCCAAA+TGG + chr2_1:18044809-18044828 Msa0199160:CDS 40.0%
!!! TCCAAATGGGTTGAACGTTT+TGG + chr2_1:18044823-18044842 Msa0199160:CDS 40.0%
TCCAAAACGTTCAACCCATT+TGG - chr2_1:18044827-18044846 None:intergenic 40.0%
CAAATTGACTGCAGATGTAG+TGG + chr2_1:18044847-18044866 Msa0199160:CDS 40.0%
TAGGGATGTTACACTTACAG+TGG + chr2_1:18044939-18044958 Msa0199160:three_prime_UTR 40.0%
ACATAGCATTGTCGCATAAC+AGG - chr2_1:18045091-18045110 None:intergenic 40.0%
!! TTTTAGTGGATAAGGGAGGG+AGG - chr2_1:18040960-18040979 None:intergenic 45.0%
GCTTCCATAGCTTCTTCTAC+AGG + chr2_1:18041024-18041043 Msa0199160:CDS 45.0%
AAGCCCTGTAGAAGAAGCTA+TGG - chr2_1:18041031-18041050 None:intergenic 45.0%
GGTAACCATGCTCAAATTCG+TGG + chr2_1:18041786-18041805 Msa0199160:intron 45.0%
!! GAGTATTGGAGTTACGTTGG+TGG + chr2_1:18041815-18041834 Msa0199160:intron 45.0%
GTGGACACATACGTGAAAAG+TGG + chr2_1:18042246-18042265 Msa0199160:CDS 45.0%
CACATACGTGAAAAGTGGCA+TGG + chr2_1:18042251-18042270 Msa0199160:CDS 45.0%
GTGAAAAGTGGCATGGTTGT+AGG + chr2_1:18042258-18042277 Msa0199160:CDS 45.0%
AAGTGGCATGGTTGTAGGAT+TGG + chr2_1:18042263-18042282 Msa0199160:CDS 45.0%
AGTGGCATGGTTGTAGGATT+GGG + chr2_1:18042264-18042283 Msa0199160:CDS 45.0%
GGTATGGCCATTCAGCATTT+AGG + chr2_1:18042303-18042322 Msa0199160:CDS 45.0%
AAGTGCAAGTGAAGCAGCAA+AGG + chr2_1:18042597-18042616 Msa0199160:CDS 45.0%
CTGTCTTGGTAGGTATCCAA+AGG - chr2_1:18042631-18042650 None:intergenic 45.0%
CACATGAGAACTGTCTTGGT+AGG - chr2_1:18042641-18042660 None:intergenic 45.0%
TGCACACATGAGAACTGTCT+TGG - chr2_1:18042645-18042664 None:intergenic 45.0%
! AGTATACAAGGCTTTCTGGC+AGG - chr2_1:18042736-18042755 None:intergenic 45.0%
ACGACGGAAATTGCAAAGTG+AGG + chr2_1:18043022-18043041 Msa0199160:CDS 45.0%
!!! TGATTTCCCCGCTTTTTCTC+CGG + chr2_1:18043131-18043150 Msa0199160:intron 45.0%
AAACAACCGGAGAAAAAGCG+GGG - chr2_1:18043140-18043159 None:intergenic 45.0%
CAAACAACCGGAGAAAAAGC+GGG - chr2_1:18043141-18043160 None:intergenic 45.0%
GCAAACAACCGGAGAAAAAG+CGG - chr2_1:18043142-18043161 None:intergenic 45.0%
! CAGTATGGACTGCAAACAAC+CGG - chr2_1:18043153-18043172 None:intergenic 45.0%
AAACCAGTACAAAGGTGGTC+TGG + chr2_1:18043208-18043227 Msa0199160:CDS 45.0%
TGTGGAGAAGACCAGCTATT+GGG + chr2_1:18043797-18043816 Msa0199160:CDS 45.0%
ACATCTCCAATACCAAGCCT+TGG + chr2_1:18043892-18043911 Msa0199160:CDS 45.0%
ATTGCAGGCAGAACTTACCA+AGG - chr2_1:18043912-18043931 None:intergenic 45.0%
!! ATTGATGGTGTTGCAGACCA+TGG + chr2_1:18044018-18044037 Msa0199160:CDS 45.0%
! GGGTTTTCGATATGACACCA+TGG - chr2_1:18044038-18044057 None:intergenic 45.0%
TTCATCAGTAAGGCCCAGTT+TGG + chr2_1:18044365-18044384 Msa0199160:intron 45.0%
TCATCGAGACAAGAGCGAGT+GGG - chr2_1:18041132-18041151 None:intergenic 50.0%
CAGTGTATTGAGCTGCTTGG+AGG - chr2_1:18041167-18041186 None:intergenic 50.0%
GTGGCATGGTTGTAGGATTG+GGG + chr2_1:18042265-18042284 Msa0199160:CDS 50.0%
ATGGTTGTAGGATTGGGGTC+TGG + chr2_1:18042270-18042289 Msa0199160:CDS 50.0%
GTCTGGTCATGCTTCTGGTA+TGG + chr2_1:18042287-18042306 Msa0199160:CDS 50.0%
CTGGCGACCTAAATGCTGAA+TGG - chr2_1:18042313-18042332 None:intergenic 50.0%
AAAGGAGGAAGAGCTCACGT+GGG - chr2_1:18042372-18042391 None:intergenic 50.0%
CAAGTGAAGCAGCAAAGGCT+GGG + chr2_1:18042602-18042621 Msa0199160:CDS 50.0%
AGCAAAGGCTGGGATTCCTT+TGG + chr2_1:18042612-18042631 Msa0199160:CDS 50.0%
ATGCCGACGGTGTAGAAGAA+GGG + chr2_1:18042979-18042998 Msa0199160:CDS 50.0%
TGTCCCTTCTTCTACACCGT+CGG - chr2_1:18042985-18043004 None:intergenic 50.0%
CTTCCAGACCACCTTTGTAC+TGG - chr2_1:18043214-18043233 None:intergenic 50.0%
CAGTACAAAGGTGGTCTGGA+AGG + chr2_1:18043212-18043231 Msa0199160:CDS 50.0%
TTCCTTGCAGCTCAACTGGT+TGG + chr2_1:18043329-18043348 Msa0199160:intron 50.0%
TATGTTTCTTGGCGATGCCG+AGG + chr2_1:18043374-18043393 Msa0199160:CDS 50.0%
GTGTGGAGAAGACCAGCTAT+TGG + chr2_1:18043796-18043815 Msa0199160:CDS 50.0%
AGTGGAAAGTCACCTCCTAG+TGG - chr2_1:18043832-18043851 None:intergenic 50.0%
ACTAGGAGGTGACTTTCCAC+TGG + chr2_1:18043831-18043850 Msa0199160:CDS 50.0%
GTGACTTTCCACTGGTCACA+GGG + chr2_1:18043839-18043858 Msa0199160:CDS 50.0%
TGACTTTCCACTGGTCACAG+GGG + chr2_1:18043840-18043859 Msa0199160:CDS 50.0%
AGGCAGAACTTACCAAGGCT+TGG - chr2_1:18043907-18043926 None:intergenic 50.0%
AGTGGATAAGGGAGGGAGGT+AGG - chr2_1:18040956-18040975 None:intergenic 55.0%
GTCATCGAGACAAGAGCGAG+TGG - chr2_1:18041133-18041152 None:intergenic 55.0%
TTGGGGTCTGGTCATGCTTC+TGG + chr2_1:18042282-18042301 Msa0199160:CDS 55.0%
TTAGGTCGCCAGCTTCGTCA+TGG + chr2_1:18042321-18042340 Msa0199160:CDS 55.0%
GAAAGGAGGAAGAGCTCACG+TGG - chr2_1:18042373-18042392 None:intergenic 55.0%
GCAAGTGAAGCAGCAAAGGC+TGG + chr2_1:18042601-18042620 Msa0199160:CDS 55.0%
GATGCCGACGGTGTAGAAGA+AGG + chr2_1:18042978-18042997 Msa0199160:CDS 55.0%
TGCCAACCAGTTGAGCTGCA+AGG - chr2_1:18043334-18043353 None:intergenic 55.0%
AGACCAGCTATTGGGCAAGC+AGG + chr2_1:18043805-18043824 Msa0199160:CDS 55.0%
ATTGGGCAAGCAGGTCCACT+AGG + chr2_1:18043814-18043833 Msa0199160:CDS 55.0%
GGTGACTTTCCACTGGTCAC+AGG + chr2_1:18043838-18043857 Msa0199160:CDS 55.0%
TTTCCACTGGTCACAGGGGA+AGG + chr2_1:18043844-18043863 Msa0199160:CDS 55.0%
!! GACTGCAGATGTAGTGGGCT+AGG + chr2_1:18044853-18044872 Msa0199160:CDS 55.0%
AGTTGCGCGTGTGTGCATGT+AGG - chr2_1:18044999-18045018 None:intergenic 55.0%
GGACCTGCTTGCCCAATAGC+TGG - chr2_1:18043811-18043830 None:intergenic 60.0%
TGTCCTTCCCCTGTGACCAG+TGG - chr2_1:18043850-18043869 None:intergenic 60.0%
GGGCAAGCAGGTCCACTAGG+AGG + chr2_1:18043817-18043836 Msa0199160:CDS 65.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 18040942 18045224 18040942 ID=Msa0199160;Name=Msa0199160
chr2_1 mRNA 18040942 18045224 18040942 ID=Msa0199160-mRNA-1;Parent=Msa0199160;Name=Msa0199160-mRNA-1;_AED=0.15;_eAED=0.15;_QI=79|1|1|1|1|1|9|350|292
chr2_1 exon 18040942 18041185 18040942 ID=Msa0199160-mRNA-1:exon:7639;Parent=Msa0199160-mRNA-1
chr2_1 exon 18042246 18042373 18042246 ID=Msa0199160-mRNA-1:exon:7640;Parent=Msa0199160-mRNA-1
chr2_1 exon 18042588 18042657 18042588 ID=Msa0199160-mRNA-1:exon:7641;Parent=Msa0199160-mRNA-1
chr2_1 exon 18042960 18043064 18042960 ID=Msa0199160-mRNA-1:exon:7642;Parent=Msa0199160-mRNA-1
chr2_1 exon 18043164 18043259 18043164 ID=Msa0199160-mRNA-1:exon:7643;Parent=Msa0199160-mRNA-1
chr2_1 exon 18043339 18043395 18043339 ID=Msa0199160-mRNA-1:exon:7644;Parent=Msa0199160-mRNA-1
chr2_1 exon 18043796 18043913 18043796 ID=Msa0199160-mRNA-1:exon:7645;Parent=Msa0199160-mRNA-1
chr2_1 exon 18043992 18044058 18043992 ID=Msa0199160-mRNA-1:exon:7646;Parent=Msa0199160-mRNA-1
chr2_1 exon 18044802 18045224 18044802 ID=Msa0199160-mRNA-1:exon:7647;Parent=Msa0199160-mRNA-1
chr2_1 five_prime_UTR 18040942 18041020 18040942 ID=Msa0199160-mRNA-1:five_prime_utr;Parent=Msa0199160-mRNA-1
chr2_1 CDS 18041021 18041185 18041021 ID=Msa0199160-mRNA-1:cds;Parent=Msa0199160-mRNA-1
chr2_1 CDS 18042246 18042373 18042246 ID=Msa0199160-mRNA-1:cds;Parent=Msa0199160-mRNA-1
chr2_1 CDS 18042588 18042657 18042588 ID=Msa0199160-mRNA-1:cds;Parent=Msa0199160-mRNA-1
chr2_1 CDS 18042960 18043064 18042960 ID=Msa0199160-mRNA-1:cds;Parent=Msa0199160-mRNA-1
chr2_1 CDS 18043164 18043259 18043164 ID=Msa0199160-mRNA-1:cds;Parent=Msa0199160-mRNA-1
chr2_1 CDS 18043339 18043395 18043339 ID=Msa0199160-mRNA-1:cds;Parent=Msa0199160-mRNA-1
chr2_1 CDS 18043796 18043913 18043796 ID=Msa0199160-mRNA-1:cds;Parent=Msa0199160-mRNA-1
chr2_1 CDS 18043992 18044058 18043992 ID=Msa0199160-mRNA-1:cds;Parent=Msa0199160-mRNA-1
chr2_1 CDS 18044802 18044874 18044802 ID=Msa0199160-mRNA-1:cds;Parent=Msa0199160-mRNA-1
chr2_1 three_prime_UTR 18044875 18045224 18044875 ID=Msa0199160-mRNA-1:three_prime_utr;Parent=Msa0199160-mRNA-1
Gene Sequence

>Msa0199160

ATGGCTTCCATAGCTTCTTCTACAGGGCTTCTTCTGAATTCACCAACTTCTTTATTGGAAAGAAGAAGAAGAAGGAAAAGAATCAGTCCCAATTTTGTTAGAATGATGCCCACTCGCTCTTGTCTCGATGACACTTCTTCTCTCCTCCAAGCAGCTCAATACACTGTGGACACATACGTGAAAAGTGGCATGGTTGTAGGATTGGGGTCTGGTCATGCTTCTGGTATGGCCATTCAGCATTTAGGTCGCCAGCTTCGTCATGGTAATTTGAAAGACATAATAGGGATTCCCACGTCTGTTGCAAGTGCAAGTGAAGCAGCAAAGGCTGGGATTCCTTTGGATACCTACCAAGACAGTTCTCATATTGATATTGCATTTGATGATGCCGACGGTGTAGAAGAAGGGACATTTGTTGCTATAATTGGACGACGGAAATTGCAAAGTGAGGAATCCATAATCCAAGAGAAGTCCATACTGAATAACGCCAATAAACTAGTCTTCATTATTGAAGAAAACCAGTACAAAGGTGGTCTGGAAGGTTCTATTCCAGTTTTAATTCAGTCTCTCAACTGGTTGGCAACTGCTGAAGAGATTGACGATATGTTTCTTGGCGATGCCGAGGTGTGGAGAAGACCAGCTATTGGGCAAGCAGGTCCACTAGGAGGTGACTTTCCACTGGTCACAGGGGAAGGACATAATGTTCTTGATGTTATCTTCACATCTCCAATACCAAGCCTTGCTGAAGTAGCGAAAATCCTTGATAAAATTGATGGTGTTGCAGACCATGGTGTCATATCGAAAACCCCATGTACGGTGGTAATTGCATCTCCAAATGGGTTGAACGTTTTGGACAAATTGACTGCAGATGTAGTGGGCTAG

Protein sequence

>Msa0199160

MASIASSTGLLLNSPTSLLERRRRRKRISPNFVRMMPTRSCLDDTSSLLQAAQYTVDTYVKSGMVVGLGSGHASGMAIQHLGRQLRHGNLKDIIGIPTSVASASEAAKAGIPLDTYQDSSHIDIAFDDADGVEEGTFVAIIGRRKLQSEESIIQEKSILNNANKLVFIIEENQYKGGLEGSIPVLIQSLNWLATAEEIDDMFLGDAEVWRRPAIGQAGPLGGDFPLVTGEGHNVLDVIFTSPIPSLAEVAKILDKIDGVADHGVISKTPCTVVIASPNGLNVLDKLTADVVG*