AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0035590


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0035590 MtrunA17_Chr1g0197711 95.556 315 5 2 1 315 1 306 0.0 598
Msa0035590 MtrunA17_Chr3g0105721 45.175 228 118 2 86 313 81 301 1.86e-67 213
Msa0035590 MtrunA17_Chr4g0006481 41.870 246 132 3 72 313 1 239 5.90e-65 204
Msa0035590 MtrunA17_Chr4g0006501 43.721 215 114 2 94 308 52 259 2.82e-59 191
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0035590 AT5G04490.1 65.041 246 80 1 70 315 65 304 1.06e-113 331
Msa0035590 AT5G04490.2 68.478 184 52 1 70 253 65 242 6.42e-88 263
Msa0035590 AT5G58560.1 41.667 228 126 2 86 313 87 307 1.04e-62 201

Find 94 sgRNAs with CRISPR-Local

Find 320 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTACTTATTAAACCATTAT+TGG 0.158312 1_1:-63825110 None:intergenic
AGCATAGCAATGCTTATATT+TGG 0.177370 1_1:+63824462 Msa0035590:CDS
AATGCTTATATTTGGATTCT+TGG 0.197393 1_1:+63824470 Msa0035590:CDS
TATAAAATCATTTCCAATAA+TGG 0.205255 1_1:+63825097 Msa0035590:three_prime_UTR
TGTGAATTTCTTGAGGCTTT+TGG 0.214520 1_1:+63823983 Msa0035590:CDS
TTTGGATTCTTGGTTTCAAT+TGG 0.256377 1_1:+63824480 Msa0035590:CDS
GGTGCCACTGTTGGTGTTCT+TGG 0.284632 1_1:+63823446 Msa0035590:CDS
GATATCATTGGTAGAAGATA+TGG 0.303985 1_1:+63824396 Msa0035590:CDS
GAGGTGGTGGTGGTTGTTGC+CGG 0.304454 1_1:-63823272 None:intergenic
TTAATATCCCAACATAATAA+AGG 0.311784 1_1:-63824183 None:intergenic
AAAGCAATCCTGATAATATA+TGG 0.321784 1_1:-63823764 None:intergenic
ATTTATCTAAATCACAGAAA+TGG 0.324467 1_1:-63823817 None:intergenic
GAAATGGGGTACCTGAAAAT+TGG 0.330597 1_1:-63823801 None:intergenic
TTTATCTAAATCACAGAAAT+GGG 0.333704 1_1:-63823816 None:intergenic
TTCTGTTCCACTAGTAACTA+TGG 0.342085 1_1:+63824793 Msa0035590:CDS
TAATATCCCAACATAATAAA+GGG 0.358330 1_1:-63824182 None:intergenic
TCCAATTGGGGTTGTTGCCT+TGG 0.359168 1_1:+63824237 Msa0035590:CDS
CTTTCCATCATTAATAACTT+TGG 0.360954 1_1:+63824831 Msa0035590:exon
TGTTGAGTGCTATTGTGTTC+TGG 0.369590 1_1:+63824206 Msa0035590:CDS
TTACAAATCTTTCATCTAAA+CGG 0.377409 1_1:-63823376 None:intergenic
GAGGTCCCCTTTATTATGTT+GGG 0.378811 1_1:+63824176 Msa0035590:CDS
AAACTGGTCCATATATTATC+AGG 0.380119 1_1:+63823756 Msa0035590:CDS
TTCTGGCGTGAATCTCCAAT+TGG 0.390436 1_1:+63824223 Msa0035590:CDS
TTTGGTGAATGGTCTCTCAT+TGG 0.391870 1_1:+63824001 Msa0035590:CDS
GTGGGTTTGTTCCAAGGAAA+AGG 0.392595 1_1:-63823299 None:intergenic
GAAATTGATGAAAGGTATAT+AGG 0.392812 1_1:-63824858 None:intergenic
TTGGATTCTTGGTTTCAATT+GGG 0.404183 1_1:+63824481 Msa0035590:CDS
AACAAATAACCTCACCTGAT+TGG 0.413537 1_1:+63823107 None:intergenic
ATTAGATCTTGAGCATTTGC+AGG 0.415465 1_1:-63823413 None:intergenic
CTCTCATTGGTTACTGATCC+AGG 0.421525 1_1:+63824014 Msa0035590:CDS
CTCTCCAAAGTTATTAATGA+TGG 0.428032 1_1:-63824835 None:intergenic
ACAGTGTCGTTTGTTGTTGT+GGG 0.430951 1_1:-63823317 None:intergenic
TCTGGCGTGAATCTCCAATT+GGG 0.433764 1_1:+63824224 Msa0035590:CDS
CTCCGTGCACCGCCGTTCAC+CGG 0.435055 1_1:+63823253 Msa0035590:CDS
GACAGTGTCGTTTGTTGTTG+TGG 0.438491 1_1:-63823318 None:intergenic
AGGAAAAGGGTTGGAGGTGG+TGG 0.441202 1_1:-63823285 None:intergenic
TCATCGACCACCTCAGTAAT+GGG 0.442023 1_1:-63824764 None:intergenic
AGAGGTCCCCTTTATTATGT+TGG 0.445081 1_1:+63824175 Msa0035590:CDS
GCAGGGTCTGAGCAGAAAAC+TGG 0.450996 1_1:+63823740 Msa0035590:intron
AAAAGGGTTGGAGGTGGTGG+TGG 0.452390 1_1:-63823282 None:intergenic
ATAATAAGTTCTCTCCAATC+AGG 0.452408 1_1:-63823121 None:intergenic
GCCAAGGCAACAACCCCAAT+TGG 0.456276 1_1:-63824238 None:intergenic
AGCAGTGGTACACTGTAAAT+AGG 0.461451 1_1:+63825042 Msa0035590:three_prime_UTR
CGGCGGTGCACGGAGGAGAA+TGG 0.465256 1_1:-63823245 None:intergenic
CAGCAAAGTAACGAGCTTCA+AGG 0.476437 1_1:-63823947 None:intergenic
GTCACAGATTTGATGAGTCC+TGG 0.481572 1_1:-63824032 None:intergenic
TGGTGGTTGTTGCCGGTGAA+CGG 0.484199 1_1:-63823265 None:intergenic
ACTGAGAGAGTGACAAGAGT+TGG 0.484845 1_1:-63823187 None:intergenic
GACATGTGCAGTTTGATTTG+TGG 0.485754 1_1:+63824684 Msa0035590:CDS
TTCCTCTTGTGAATTTCTTG+AGG 0.487667 1_1:+63823976 Msa0035590:CDS
GTTGTTGTGGGTTTGTTCCA+AGG 0.487703 1_1:-63823305 None:intergenic
CTGTACTACTATTCAGCTCT+AGG 0.488201 1_1:+63824662 Msa0035590:CDS
TGCCGGTGAACGGCGGTGCA+CGG 0.494482 1_1:-63823255 None:intergenic
GTCATCGACCACCTCAGTAA+TGG 0.501122 1_1:-63824765 None:intergenic
GCCACTGTTGGTGTTCTTGG+CGG 0.506473 1_1:+63823449 Msa0035590:CDS
TGGGTTTGTTCCAAGGAAAA+GGG 0.511191 1_1:-63823298 None:intergenic
CTAGGTGTAGCTGATATCAT+TGG 0.520300 1_1:+63824384 Msa0035590:intron
AGCAAAGTAACGAGCTTCAA+GGG 0.523609 1_1:-63823946 None:intergenic
TTTGTTCCAAGGAAAAGGGT+TGG 0.535640 1_1:-63823294 None:intergenic
GTTCCAAGGAAAAGGGTTGG+AGG 0.535671 1_1:-63823291 None:intergenic
AAAGACACAAAAGCAACTCT+TGG 0.543465 1_1:-63824716 None:intergenic
CCAAGGAAAAGGGTTGGAGG+TGG 0.543991 1_1:-63823288 None:intergenic
ATATCATTGGTAGAAGATAT+GGG 0.547601 1_1:+63824397 Msa0035590:CDS
ATCAAATCTGTGACTAGGAA+AGG 0.549956 1_1:+63824041 Msa0035590:CDS
CACAATGTTGGTGCCACTGT+TGG 0.565061 1_1:+63823437 Msa0035590:CDS
GCCTTGGCAATGATGTGTGG+AGG 0.567586 1_1:+63824253 Msa0035590:CDS
CCTTGGCAATGATGTGTGGA+GGG 0.571638 1_1:+63824254 Msa0035590:CDS
GCAATGATGTGTGGAGGGGA+TGG 0.575045 1_1:+63824259 Msa0035590:CDS
TTAGATCTTGAGCATTTGCA+GGG 0.579429 1_1:-63823412 None:intergenic
CGACCACCTCAGTAATGGGT+AGG 0.581372 1_1:-63824760 None:intergenic
CCCTACAGAGAATTGCTAAG+AGG 0.586996 1_1:+63824157 Msa0035590:intron
CACTGTGAAATTAACAGCAG+TGG 0.588064 1_1:+63825027 Msa0035590:three_prime_UTR
GTCACTGCCATAGTTACTAG+TGG 0.589305 1_1:-63824800 None:intergenic
GGAGAATGGAAAGAGGTGAG+AGG 0.590292 1_1:-63823231 None:intergenic
GTTGCCTTGGCAATGATGTG+TGG 0.591787 1_1:+63824250 Msa0035590:CDS
CCCTCCACACATCATTGCCA+AGG 0.594888 1_1:-63824254 None:intergenic
CAAGATCTAATCCACAATGT+TGG 0.596614 1_1:+63823425 Msa0035590:CDS
CAACAGTGGCACCAACATTG+TGG 0.602793 1_1:-63823436 None:intergenic
AGCCTCAAGAAATTCACAAG+AGG 0.606723 1_1:-63823978 None:intergenic
GCACGGAGGAGAATGGAAAG+AGG 0.609876 1_1:-63823238 None:intergenic
GTCCCTACCCATTACTGAGG+TGG 0.610171 1_1:+63824757 Msa0035590:CDS
GACCACCTCAGTAATGGGTA+GGG 0.617402 1_1:-63824759 None:intergenic
GCCGCCAAGAACACCAACAG+TGG 0.621865 1_1:-63823450 None:intergenic
GACTCATCAAATCTGTGACT+AGG 0.622315 1_1:+63824036 Msa0035590:CDS
CTTGGCAATGATGTGTGGAG+GGG 0.628426 1_1:+63824255 Msa0035590:CDS
AATATCCCAACATAATAAAG+GGG 0.628744 1_1:-63824181 None:intergenic
GGTGGGAAGAAATTGATGAA+AGG 0.633350 1_1:-63824866 None:intergenic
CGGACACTACGATGTACTGA+AGG 0.643227 1_1:-63823356 None:intergenic
CTGGCGTGAATCTCCAATTG+GGG 0.652571 1_1:+63824225 Msa0035590:CDS
GGAGTCCCTACCCATTACTG+AGG 0.664036 1_1:+63824754 Msa0035590:CDS
AAGTTCTCTCCAATCAGGTG+AGG 0.674882 1_1:-63823116 None:intergenic
TTATCTAAATCACAGAAATG+GGG 0.675535 1_1:-63823815 None:intergenic
CGGTGAACGGCGGTGCACGG+AGG 0.687859 1_1:-63823252 None:intergenic
TGGTTGTTGCCGGTGAACGG+CGG 0.696223 1_1:-63823262 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GGATTTTTTTTGTTTATTTA+AGG - chr1_1:63823147-63823166 None:intergenic 15.0%
!! TAAACAAAAAAAATCCTATA+AGG + chr1_1:63823151-63823170 Msa0035590:five_prime_UTR 15.0%
!! AAACAAAAAAAATCCTATAA+GGG + chr1_1:63823152-63823171 Msa0035590:five_prime_UTR 15.0%
!!! AATGTCTTTATTCATTTTTT+TGG + chr1_1:63824083-63824102 Msa0035590:intron 15.0%
!!! TTCATTTTTTTGGAATTATT+TGG + chr1_1:63824093-63824112 Msa0035590:intron 15.0%
!! TATAAAATCATTTCCAATAA+TGG + chr1_1:63825097-63825116 Msa0035590:three_prime_UTR 15.0%
!!! GGATTTTTTTTGTTTATTTA+AGG - chr1_1:63823147-63823166 None:intergenic 15.0%
!! TAAACAAAAAAAATCCTATA+AGG + chr1_1:63823151-63823170 Msa0035590:five_prime_UTR 15.0%
!! AAACAAAAAAAATCCTATAA+GGG + chr1_1:63823152-63823171 Msa0035590:five_prime_UTR 15.0%
!!! AATGTCTTTATTCATTTTTT+TGG + chr1_1:63824083-63824102 Msa0035590:intron 15.0%
!!! TTCATTTTTTTGGAATTATT+TGG + chr1_1:63824093-63824112 Msa0035590:intron 15.0%
!! TATAAAATCATTTCCAATAA+TGG + chr1_1:63825097-63825116 Msa0035590:three_prime_UTR 15.0%
!! TTACAAATCTTTCATCTAAA+CGG - chr1_1:63823379-63823398 None:intergenic 20.0%
!!! GTCAATTCATATATTTTTCT+TGG - chr1_1:63823610-63823629 None:intergenic 20.0%
!! TTTATCTAAATCACAGAAAT+GGG - chr1_1:63823819-63823838 None:intergenic 20.0%
!! ATTTATCTAAATCACAGAAA+TGG - chr1_1:63823820-63823839 None:intergenic 20.0%
!! TAATATCCCAACATAATAAA+GGG - chr1_1:63824185-63824204 None:intergenic 20.0%
!! TTAATATCCCAACATAATAA+AGG - chr1_1:63824186-63824205 None:intergenic 20.0%
!! TTAATCAACATTGAATTTGA+TGG + chr1_1:63824358-63824377 Msa0035590:intron 20.0%
!! AAGAATAATTCAAAAAACAG+TGG - chr1_1:63824890-63824909 None:intergenic 20.0%
!! TTACAAATCTTTCATCTAAA+CGG - chr1_1:63823379-63823398 None:intergenic 20.0%
!!! GTCAATTCATATATTTTTCT+TGG - chr1_1:63823610-63823629 None:intergenic 20.0%
!! TTTATCTAAATCACAGAAAT+GGG - chr1_1:63823819-63823838 None:intergenic 20.0%
!! ATTTATCTAAATCACAGAAA+TGG - chr1_1:63823820-63823839 None:intergenic 20.0%
!! TAATATCCCAACATAATAAA+GGG - chr1_1:63824185-63824204 None:intergenic 20.0%
!! TTAATATCCCAACATAATAA+AGG - chr1_1:63824186-63824205 None:intergenic 20.0%
!! TTAATCAACATTGAATTTGA+TGG + chr1_1:63824358-63824377 Msa0035590:intron 20.0%
!! AAGAATAATTCAAAAAACAG+TGG - chr1_1:63824890-63824909 None:intergenic 20.0%
! AAAAAAAATCCTATAAGGGT+TGG + chr1_1:63823156-63823175 Msa0035590:five_prime_UTR 25.0%
! AAACATCATTGATCAAGTAA+TGG + chr1_1:63823514-63823533 Msa0035590:intron 25.0%
!!! GATCCATTTTTTACTTGTTT+TGG + chr1_1:63823633-63823652 Msa0035590:intron 25.0%
! GAACCAAAACAAGTAAAAAA+TGG - chr1_1:63823639-63823658 None:intergenic 25.0%
! AAAGCAATCCTGATAATATA+TGG - chr1_1:63823767-63823786 None:intergenic 25.0%
! TTATCTAAATCACAGAAATG+GGG - chr1_1:63823818-63823837 None:intergenic 25.0%
!!! ATTGCTTTGTTTGAATGTTT+TGG + chr1_1:63823901-63823920 Msa0035590:intron 25.0%
!!! AATGTTTTGGTGTTAATGTT+AGG + chr1_1:63823914-63823933 Msa0035590:intron 25.0%
! AAGACATTTGATACTTACTT+TGG - chr1_1:63824071-63824090 None:intergenic 25.0%
!!! TTTTTGGAATTATTTGGTCA+TGG + chr1_1:63824099-63824118 Msa0035590:intron 25.0%
! AATATCCCAACATAATAAAG+GGG - chr1_1:63824184-63824203 None:intergenic 25.0%
! ATAAAGCAATGTGTAAAGAA+AGG - chr1_1:63824292-63824311 None:intergenic 25.0%
!! TTATTTCTTAAACCTTTCCT+AGG + chr1_1:63824308-63824327 Msa0035590:intron 25.0%
! TATTTCTTAAACCTTTCCTA+GGG + chr1_1:63824309-63824328 Msa0035590:intron 25.0%
! AAAAAATTGCAAAGCTTCTA+GGG - chr1_1:63824339-63824358 None:intergenic 25.0%
! AAAAAAATTGCAAAGCTTCT+AGG - chr1_1:63824340-63824359 None:intergenic 25.0%
! ATATCATTGGTAGAAGATAT+GGG + chr1_1:63824397-63824416 Msa0035590:CDS 25.0%
! TTACAACCAAAAAAAGAGTT+GGG + chr1_1:63824434-63824453 Msa0035590:CDS 25.0%
! AATGCTTATATTTGGATTCT+TGG + chr1_1:63824470-63824489 Msa0035590:CDS 25.0%
!!! AAAAAGTACTGTTGAAAAAG+TGG - chr1_1:63824528-63824547 None:intergenic 25.0%
! CTTTCCATCATTAATAACTT+TGG + chr1_1:63824831-63824850 Msa0035590:exon 25.0%
!! GAAATTGATGAAAGGTATAT+AGG - chr1_1:63824861-63824880 None:intergenic 25.0%
! ATAATTCAAAAAACAGTGGT+GGG - chr1_1:63824886-63824905 None:intergenic 25.0%
! AATAATTCAAAAAACAGTGG+TGG - chr1_1:63824887-63824906 None:intergenic 25.0%
! AAAAAAAATCCTATAAGGGT+TGG + chr1_1:63823156-63823175 Msa0035590:five_prime_UTR 25.0%
! AAACATCATTGATCAAGTAA+TGG + chr1_1:63823514-63823533 Msa0035590:intron 25.0%
!!! GATCCATTTTTTACTTGTTT+TGG + chr1_1:63823633-63823652 Msa0035590:intron 25.0%
! GAACCAAAACAAGTAAAAAA+TGG - chr1_1:63823639-63823658 None:intergenic 25.0%
! AAAGCAATCCTGATAATATA+TGG - chr1_1:63823767-63823786 None:intergenic 25.0%
! TTATCTAAATCACAGAAATG+GGG - chr1_1:63823818-63823837 None:intergenic 25.0%
!!! ATTGCTTTGTTTGAATGTTT+TGG + chr1_1:63823901-63823920 Msa0035590:intron 25.0%
!!! AATGTTTTGGTGTTAATGTT+AGG + chr1_1:63823914-63823933 Msa0035590:intron 25.0%
! AAGACATTTGATACTTACTT+TGG - chr1_1:63824071-63824090 None:intergenic 25.0%
!!! TTTTTGGAATTATTTGGTCA+TGG + chr1_1:63824099-63824118 Msa0035590:intron 25.0%
! AATATCCCAACATAATAAAG+GGG - chr1_1:63824184-63824203 None:intergenic 25.0%
! ATAAAGCAATGTGTAAAGAA+AGG - chr1_1:63824292-63824311 None:intergenic 25.0%
!! TTATTTCTTAAACCTTTCCT+AGG + chr1_1:63824308-63824327 Msa0035590:intron 25.0%
! TATTTCTTAAACCTTTCCTA+GGG + chr1_1:63824309-63824328 Msa0035590:intron 25.0%
! AAAAAATTGCAAAGCTTCTA+GGG - chr1_1:63824339-63824358 None:intergenic 25.0%
! AAAAAAATTGCAAAGCTTCT+AGG - chr1_1:63824340-63824359 None:intergenic 25.0%
! ATATCATTGGTAGAAGATAT+GGG + chr1_1:63824397-63824416 Msa0035590:CDS 25.0%
! TTACAACCAAAAAAAGAGTT+GGG + chr1_1:63824434-63824453 Msa0035590:CDS 25.0%
! AATGCTTATATTTGGATTCT+TGG + chr1_1:63824470-63824489 Msa0035590:CDS 25.0%
!!! AAAAAGTACTGTTGAAAAAG+TGG - chr1_1:63824528-63824547 None:intergenic 25.0%
! CTTTCCATCATTAATAACTT+TGG + chr1_1:63824831-63824850 Msa0035590:exon 25.0%
!! GAAATTGATGAAAGGTATAT+AGG - chr1_1:63824861-63824880 None:intergenic 25.0%
! ATAATTCAAAAAACAGTGGT+GGG - chr1_1:63824886-63824905 None:intergenic 25.0%
! AATAATTCAAAAAACAGTGG+TGG - chr1_1:63824887-63824906 None:intergenic 25.0%
ATAATAAGTTCTCTCCAATC+AGG - chr1_1:63823124-63823143 None:intergenic 30.0%
TCATTGATCAAGTAATGGTT+TGG + chr1_1:63823519-63823538 Msa0035590:intron 30.0%
!! ATCTGTGTTTGCTTTGAAAT+TGG + chr1_1:63823702-63823721 Msa0035590:intron 30.0%
AAACTGGTCCATATATTATC+AGG + chr1_1:63823756-63823775 Msa0035590:CDS 30.0%
!!! ATTATCAGGATTGCTTTTTC+TGG + chr1_1:63823770-63823789 Msa0035590:CDS 30.0%
! TCTTTGCTTTATTCCTTATG+AGG + chr1_1:63823861-63823880 Msa0035590:intron 30.0%
TTCCTTATGAGGAAAGTTTA+AGG + chr1_1:63823872-63823891 Msa0035590:intron 30.0%
! CATTGAATTTGATGGTTACT+AGG + chr1_1:63824366-63824385 Msa0035590:intron 30.0%
GATATCATTGGTAGAAGATA+TGG + chr1_1:63824396-63824415 Msa0035590:CDS 30.0%
!!! CAACTCTTTTTTTGGTTGTA+AGG - chr1_1:63824435-63824454 None:intergenic 30.0%
CTTACAACCAAAAAAAGAGT+TGG + chr1_1:63824433-63824452 Msa0035590:CDS 30.0%
AGCATAGCAATGCTTATATT+TGG + chr1_1:63824462-63824481 Msa0035590:CDS 30.0%
TTTGGATTCTTGGTTTCAAT+TGG + chr1_1:63824480-63824499 Msa0035590:CDS 30.0%
TTGGATTCTTGGTTTCAATT+GGG + chr1_1:63824481-63824500 Msa0035590:CDS 30.0%
AGTGTGAAAATCTATCTACT+TGG - chr1_1:63824611-63824630 None:intergenic 30.0%
CTCTCCAAAGTTATTAATGA+TGG - chr1_1:63824838-63824857 None:intergenic 30.0%
TCTTACTCTTAGTATGTGTT+TGG + chr1_1:63824906-63824925 Msa0035590:intron 30.0%
! TTAGTATGTGTTTGGAATAC+CGG + chr1_1:63824914-63824933 Msa0035590:intron 30.0%
! AAGCTAAAAAAAGCACGTTT+AGG + chr1_1:63824941-63824960 Msa0035590:intron 30.0%
ATAATAAGTTCTCTCCAATC+AGG - chr1_1:63823124-63823143 None:intergenic 30.0%
TCATTGATCAAGTAATGGTT+TGG + chr1_1:63823519-63823538 Msa0035590:intron 30.0%
!! ATCTGTGTTTGCTTTGAAAT+TGG + chr1_1:63823702-63823721 Msa0035590:intron 30.0%
AAACTGGTCCATATATTATC+AGG + chr1_1:63823756-63823775 Msa0035590:CDS 30.0%
!!! ATTATCAGGATTGCTTTTTC+TGG + chr1_1:63823770-63823789 Msa0035590:CDS 30.0%
! TCTTTGCTTTATTCCTTATG+AGG + chr1_1:63823861-63823880 Msa0035590:intron 30.0%
TTCCTTATGAGGAAAGTTTA+AGG + chr1_1:63823872-63823891 Msa0035590:intron 30.0%
! CATTGAATTTGATGGTTACT+AGG + chr1_1:63824366-63824385 Msa0035590:intron 30.0%
GATATCATTGGTAGAAGATA+TGG + chr1_1:63824396-63824415 Msa0035590:CDS 30.0%
!!! CAACTCTTTTTTTGGTTGTA+AGG - chr1_1:63824435-63824454 None:intergenic 30.0%
CTTACAACCAAAAAAAGAGT+TGG + chr1_1:63824433-63824452 Msa0035590:CDS 30.0%
AGCATAGCAATGCTTATATT+TGG + chr1_1:63824462-63824481 Msa0035590:CDS 30.0%
TTTGGATTCTTGGTTTCAAT+TGG + chr1_1:63824480-63824499 Msa0035590:CDS 30.0%
TTGGATTCTTGGTTTCAATT+GGG + chr1_1:63824481-63824500 Msa0035590:CDS 30.0%
AGTGTGAAAATCTATCTACT+TGG - chr1_1:63824611-63824630 None:intergenic 30.0%
CTCTCCAAAGTTATTAATGA+TGG - chr1_1:63824838-63824857 None:intergenic 30.0%
TCTTACTCTTAGTATGTGTT+TGG + chr1_1:63824906-63824925 Msa0035590:intron 30.0%
! TTAGTATGTGTTTGGAATAC+CGG + chr1_1:63824914-63824933 Msa0035590:intron 30.0%
! AAGCTAAAAAAAGCACGTTT+AGG + chr1_1:63824941-63824960 Msa0035590:intron 30.0%
GATCAAAAACCAACCCTTAT+AGG - chr1_1:63823168-63823187 None:intergenic 35.0%
TTAGATCTTGAGCATTTGCA+GGG - chr1_1:63823415-63823434 None:intergenic 35.0%
ATTAGATCTTGAGCATTTGC+AGG - chr1_1:63823416-63823435 None:intergenic 35.0%
CAAGATCTAATCCACAATGT+TGG + chr1_1:63823425-63823444 Msa0035590:CDS 35.0%
TGCATGCAAATTGCAAAGTA+AGG - chr1_1:63823571-63823590 None:intergenic 35.0%
!!! GATTGCTTTTTCTGGTTTCA+TGG + chr1_1:63823778-63823797 Msa0035590:CDS 35.0%
TGCCTTAAACTTTCCTCATA+AGG - chr1_1:63823877-63823896 None:intergenic 35.0%
! ATGAGGAAAGTTTAAGGCAT+TGG + chr1_1:63823878-63823897 Msa0035590:intron 35.0%
TTCCTCTTGTGAATTTCTTG+AGG + chr1_1:63823976-63823995 Msa0035590:CDS 35.0%
! TGTGAATTTCTTGAGGCTTT+TGG + chr1_1:63823983-63824002 Msa0035590:CDS 35.0%
ATCAAATCTGTGACTAGGAA+AGG + chr1_1:63824041-63824060 Msa0035590:CDS 35.0%
TGGAATTATTTGGTCATGGA+AGG + chr1_1:63824103-63824122 Msa0035590:intron 35.0%
TAGGGTATGTAAACAGTACA+AGG - chr1_1:63824142-63824161 None:intergenic 35.0%
TGCTGATATTTATTGCATGC+AGG + chr1_1:63824636-63824655 Msa0035590:intron 35.0%
AAAGACACAAAAGCAACTCT+TGG - chr1_1:63824719-63824738 None:intergenic 35.0%
!!! AGTTGCTTTTGTGTCTTTTG+TGG + chr1_1:63824721-63824740 Msa0035590:CDS 35.0%
TTCTGTTCCACTAGTAACTA+TGG + chr1_1:63824793-63824812 Msa0035590:CDS 35.0%
!!! TGCTTTTTTTAGCTTTGCAC+CGG - chr1_1:63824936-63824955 None:intergenic 35.0%
TTTAGGCAAAAGCTGGAATT+GGG + chr1_1:63824958-63824977 Msa0035590:intron 35.0%
!!! TGGCATCACGTTTTTTTTCA+CGG - chr1_1:63824993-63825012 None:intergenic 35.0%
GATCAAAAACCAACCCTTAT+AGG - chr1_1:63823168-63823187 None:intergenic 35.0%
TTAGATCTTGAGCATTTGCA+GGG - chr1_1:63823415-63823434 None:intergenic 35.0%
ATTAGATCTTGAGCATTTGC+AGG - chr1_1:63823416-63823435 None:intergenic 35.0%
CAAGATCTAATCCACAATGT+TGG + chr1_1:63823425-63823444 Msa0035590:CDS 35.0%
TGCATGCAAATTGCAAAGTA+AGG - chr1_1:63823571-63823590 None:intergenic 35.0%
!!! GATTGCTTTTTCTGGTTTCA+TGG + chr1_1:63823778-63823797 Msa0035590:CDS 35.0%
TGCCTTAAACTTTCCTCATA+AGG - chr1_1:63823877-63823896 None:intergenic 35.0%
! ATGAGGAAAGTTTAAGGCAT+TGG + chr1_1:63823878-63823897 Msa0035590:intron 35.0%
TTCCTCTTGTGAATTTCTTG+AGG + chr1_1:63823976-63823995 Msa0035590:CDS 35.0%
! TGTGAATTTCTTGAGGCTTT+TGG + chr1_1:63823983-63824002 Msa0035590:CDS 35.0%
ATCAAATCTGTGACTAGGAA+AGG + chr1_1:63824041-63824060 Msa0035590:CDS 35.0%
TGGAATTATTTGGTCATGGA+AGG + chr1_1:63824103-63824122 Msa0035590:intron 35.0%
TAGGGTATGTAAACAGTACA+AGG - chr1_1:63824142-63824161 None:intergenic 35.0%
TGCTGATATTTATTGCATGC+AGG + chr1_1:63824636-63824655 Msa0035590:intron 35.0%
AAAGACACAAAAGCAACTCT+TGG - chr1_1:63824719-63824738 None:intergenic 35.0%
!!! AGTTGCTTTTGTGTCTTTTG+TGG + chr1_1:63824721-63824740 Msa0035590:CDS 35.0%
TTCTGTTCCACTAGTAACTA+TGG + chr1_1:63824793-63824812 Msa0035590:CDS 35.0%
!!! TGCTTTTTTTAGCTTTGCAC+CGG - chr1_1:63824936-63824955 None:intergenic 35.0%
TTTAGGCAAAAGCTGGAATT+GGG + chr1_1:63824958-63824977 Msa0035590:intron 35.0%
!!! TGGCATCACGTTTTTTTTCA+CGG - chr1_1:63824993-63825012 None:intergenic 35.0%
TTTGTTCCAAGGAAAAGGGT+TGG - chr1_1:63823297-63823316 None:intergenic 40.0%
! TGGGTTTGTTCCAAGGAAAA+GGG - chr1_1:63823301-63823320 None:intergenic 40.0%
!! ACAGTGTCGTTTGTTGTTGT+GGG - chr1_1:63823320-63823339 None:intergenic 40.0%
!! GCTTTGAAATTGGTGTCACA+TGG + chr1_1:63823712-63823731 Msa0035590:intron 40.0%
!! AAATTGGTGTCACATGGTGA+TGG + chr1_1:63823718-63823737 Msa0035590:intron 40.0%
! TGGTTTCATGGCCAATTTTC+AGG + chr1_1:63823790-63823809 Msa0035590:CDS 40.0%
! GAAATGGGGTACCTGAAAAT+TGG - chr1_1:63823804-63823823 None:intergenic 40.0%
AGCAAAGTAACGAGCTTCAA+GGG - chr1_1:63823949-63823968 None:intergenic 40.0%
AGCCTCAAGAAATTCACAAG+AGG - chr1_1:63823981-63824000 None:intergenic 40.0%
! TTCTTGAGGCTTTTGGTGAA+TGG + chr1_1:63823990-63824009 Msa0035590:CDS 40.0%
TTTGGTGAATGGTCTCTCAT+TGG + chr1_1:63824001-63824020 Msa0035590:CDS 40.0%
GACTCATCAAATCTGTGACT+AGG + chr1_1:63824036-63824055 Msa0035590:CDS 40.0%
CCTCTTAGCAATTCTCTGTA+GGG - chr1_1:63824160-63824179 None:intergenic 40.0%
ACCTCTTAGCAATTCTCTGT+AGG - chr1_1:63824161-63824180 None:intergenic 40.0%
AGAGGTCCCCTTTATTATGT+TGG + chr1_1:63824175-63824194 Msa0035590:CDS 40.0%
GAGGTCCCCTTTATTATGTT+GGG + chr1_1:63824176-63824195 Msa0035590:CDS 40.0%
! TGTTGAGTGCTATTGTGTTC+TGG + chr1_1:63824206-63824225 Msa0035590:CDS 40.0%
CTAGGTGTAGCTGATATCAT+TGG + chr1_1:63824384-63824403 Msa0035590:intron 40.0%
AACCAAAAAAAGAGTTGGGC+TGG + chr1_1:63824438-63824457 Msa0035590:CDS 40.0%
!!! TACCAGCCCAACTCTTTTTT+TGG - chr1_1:63824443-63824462 None:intergenic 40.0%
CTGTACTACTATTCAGCTCT+AGG + chr1_1:63824662-63824681 Msa0035590:CDS 40.0%
!! GACATGTGCAGTTTGATTTG+TGG + chr1_1:63824684-63824703 Msa0035590:CDS 40.0%
GGTGGGAAGAAATTGATGAA+AGG - chr1_1:63824869-63824888 None:intergenic 40.0%
GTTTAGGCAAAAGCTGGAAT+TGG + chr1_1:63824957-63824976 Msa0035590:intron 40.0%
CACTGTGAAATTAACAGCAG+TGG + chr1_1:63825027-63825046 Msa0035590:three_prime_UTR 40.0%
AGCAGTGGTACACTGTAAAT+AGG + chr1_1:63825042-63825061 Msa0035590:three_prime_UTR 40.0%
TTTGTTCCAAGGAAAAGGGT+TGG - chr1_1:63823297-63823316 None:intergenic 40.0%
! TGGGTTTGTTCCAAGGAAAA+GGG - chr1_1:63823301-63823320 None:intergenic 40.0%
!! ACAGTGTCGTTTGTTGTTGT+GGG - chr1_1:63823320-63823339 None:intergenic 40.0%
!! GCTTTGAAATTGGTGTCACA+TGG + chr1_1:63823712-63823731 Msa0035590:intron 40.0%
!! AAATTGGTGTCACATGGTGA+TGG + chr1_1:63823718-63823737 Msa0035590:intron 40.0%
! TGGTTTCATGGCCAATTTTC+AGG + chr1_1:63823790-63823809 Msa0035590:CDS 40.0%
! GAAATGGGGTACCTGAAAAT+TGG - chr1_1:63823804-63823823 None:intergenic 40.0%
AGCAAAGTAACGAGCTTCAA+GGG - chr1_1:63823949-63823968 None:intergenic 40.0%
AGCCTCAAGAAATTCACAAG+AGG - chr1_1:63823981-63824000 None:intergenic 40.0%
! TTCTTGAGGCTTTTGGTGAA+TGG + chr1_1:63823990-63824009 Msa0035590:CDS 40.0%
TTTGGTGAATGGTCTCTCAT+TGG + chr1_1:63824001-63824020 Msa0035590:CDS 40.0%
GACTCATCAAATCTGTGACT+AGG + chr1_1:63824036-63824055 Msa0035590:CDS 40.0%
CCTCTTAGCAATTCTCTGTA+GGG - chr1_1:63824160-63824179 None:intergenic 40.0%
ACCTCTTAGCAATTCTCTGT+AGG - chr1_1:63824161-63824180 None:intergenic 40.0%
AGAGGTCCCCTTTATTATGT+TGG + chr1_1:63824175-63824194 Msa0035590:CDS 40.0%
GAGGTCCCCTTTATTATGTT+GGG + chr1_1:63824176-63824195 Msa0035590:CDS 40.0%
! TGTTGAGTGCTATTGTGTTC+TGG + chr1_1:63824206-63824225 Msa0035590:CDS 40.0%
CTAGGTGTAGCTGATATCAT+TGG + chr1_1:63824384-63824403 Msa0035590:intron 40.0%
AACCAAAAAAAGAGTTGGGC+TGG + chr1_1:63824438-63824457 Msa0035590:CDS 40.0%
!!! TACCAGCCCAACTCTTTTTT+TGG - chr1_1:63824443-63824462 None:intergenic 40.0%
CTGTACTACTATTCAGCTCT+AGG + chr1_1:63824662-63824681 Msa0035590:CDS 40.0%
!! GACATGTGCAGTTTGATTTG+TGG + chr1_1:63824684-63824703 Msa0035590:CDS 40.0%
GGTGGGAAGAAATTGATGAA+AGG - chr1_1:63824869-63824888 None:intergenic 40.0%
GTTTAGGCAAAAGCTGGAAT+TGG + chr1_1:63824957-63824976 Msa0035590:intron 40.0%
CACTGTGAAATTAACAGCAG+TGG + chr1_1:63825027-63825046 Msa0035590:three_prime_UTR 40.0%
AGCAGTGGTACACTGTAAAT+AGG + chr1_1:63825042-63825061 Msa0035590:three_prime_UTR 40.0%
AAGTTCTCTCCAATCAGGTG+AGG - chr1_1:63823119-63823138 None:intergenic 45.0%
ACTGAGAGAGTGACAAGAGT+TGG - chr1_1:63823190-63823209 None:intergenic 45.0%
! GTGGGTTTGTTCCAAGGAAA+AGG - chr1_1:63823302-63823321 None:intergenic 45.0%
! GTTGTTGTGGGTTTGTTCCA+AGG - chr1_1:63823308-63823327 None:intergenic 45.0%
!! GACAGTGTCGTTTGTTGTTG+TGG - chr1_1:63823321-63823340 None:intergenic 45.0%
CAGCAAAGTAACGAGCTTCA+AGG - chr1_1:63823950-63823969 None:intergenic 45.0%
! CTCTCATTGGTTACTGATCC+AGG + chr1_1:63824014-63824033 Msa0035590:CDS 45.0%
GTCACAGATTTGATGAGTCC+TGG - chr1_1:63824035-63824054 None:intergenic 45.0%
CCCTACAGAGAATTGCTAAG+AGG + chr1_1:63824157-63824176 Msa0035590:intron 45.0%
TTCTGGCGTGAATCTCCAAT+TGG + chr1_1:63824223-63824242 Msa0035590:CDS 45.0%
TCTGGCGTGAATCTCCAATT+GGG + chr1_1:63824224-63824243 Msa0035590:CDS 45.0%
TCTAGGGAAATCCCTAGGAA+AGG - chr1_1:63824323-63824342 None:intergenic 45.0%
! AAGCTTCTAGGGAAATCCCT+AGG - chr1_1:63824328-63824347 None:intergenic 45.0%
! TGTGTCTTTTGTGGCAACAG+TGG + chr1_1:63824730-63824749 Msa0035590:CDS 45.0%
TCATCGACCACCTCAGTAAT+GGG - chr1_1:63824767-63824786 None:intergenic 45.0%
GTCACTGCCATAGTTACTAG+TGG - chr1_1:63824803-63824822 None:intergenic 45.0%
AAGCACGTTTAGGCAAAAGC+TGG + chr1_1:63824951-63824970 Msa0035590:intron 45.0%
ACAGTGCTACAAGCAGTGTT+TGG - chr1_1:63825013-63825032 None:intergenic 45.0%
AAGTTCTCTCCAATCAGGTG+AGG - chr1_1:63823119-63823138 None:intergenic 45.0%
ACTGAGAGAGTGACAAGAGT+TGG - chr1_1:63823190-63823209 None:intergenic 45.0%
! GTGGGTTTGTTCCAAGGAAA+AGG - chr1_1:63823302-63823321 None:intergenic 45.0%
! GTTGTTGTGGGTTTGTTCCA+AGG - chr1_1:63823308-63823327 None:intergenic 45.0%
!! GACAGTGTCGTTTGTTGTTG+TGG - chr1_1:63823321-63823340 None:intergenic 45.0%
CAGCAAAGTAACGAGCTTCA+AGG - chr1_1:63823950-63823969 None:intergenic 45.0%
! CTCTCATTGGTTACTGATCC+AGG + chr1_1:63824014-63824033 Msa0035590:CDS 45.0%
GTCACAGATTTGATGAGTCC+TGG - chr1_1:63824035-63824054 None:intergenic 45.0%
CCCTACAGAGAATTGCTAAG+AGG + chr1_1:63824157-63824176 Msa0035590:intron 45.0%
TTCTGGCGTGAATCTCCAAT+TGG + chr1_1:63824223-63824242 Msa0035590:CDS 45.0%
TCTGGCGTGAATCTCCAATT+GGG + chr1_1:63824224-63824243 Msa0035590:CDS 45.0%
TCTAGGGAAATCCCTAGGAA+AGG - chr1_1:63824323-63824342 None:intergenic 45.0%
! AAGCTTCTAGGGAAATCCCT+AGG - chr1_1:63824328-63824347 None:intergenic 45.0%
! TGTGTCTTTTGTGGCAACAG+TGG + chr1_1:63824730-63824749 Msa0035590:CDS 45.0%
TCATCGACCACCTCAGTAAT+GGG - chr1_1:63824767-63824786 None:intergenic 45.0%
GTCACTGCCATAGTTACTAG+TGG - chr1_1:63824803-63824822 None:intergenic 45.0%
AAGCACGTTTAGGCAAAAGC+TGG + chr1_1:63824951-63824970 Msa0035590:intron 45.0%
ACAGTGCTACAAGCAGTGTT+TGG - chr1_1:63825013-63825032 None:intergenic 45.0%
!!! TTTGTTTATTTTTTTTTTAA+TGG + chr1_1:63823675-63823694 Msa0035590:intron 5.0%
!!! TTTGTTTATTTTTTTTTTAA+TGG + chr1_1:63823675-63823694 Msa0035590:intron 5.0%
GGAGAATGGAAAGAGGTGAG+AGG - chr1_1:63823234-63823253 None:intergenic 50.0%
GTTCCAAGGAAAAGGGTTGG+AGG - chr1_1:63823294-63823313 None:intergenic 50.0%
CGGACACTACGATGTACTGA+AGG - chr1_1:63823359-63823378 None:intergenic 50.0%
CAACAGTGGCACCAACATTG+TGG - chr1_1:63823439-63823458 None:intergenic 50.0%
!! CACAATGTTGGTGCCACTGT+TGG + chr1_1:63823437-63823456 Msa0035590:CDS 50.0%
CTGGCGTGAATCTCCAATTG+GGG + chr1_1:63824225-63824244 Msa0035590:CDS 50.0%
TCCAATTGGGGTTGTTGCCT+TGG + chr1_1:63824237-63824256 Msa0035590:CDS 50.0%
GTTGCCTTGGCAATGATGTG+TGG + chr1_1:63824250-63824269 Msa0035590:CDS 50.0%
CCTTGGCAATGATGTGTGGA+GGG + chr1_1:63824254-63824273 Msa0035590:CDS 50.0%
CTTGGCAATGATGTGTGGAG+GGG + chr1_1:63824255-63824274 Msa0035590:CDS 50.0%
! GTCTTTTGTGGCAACAGTGG+TGG + chr1_1:63824733-63824752 Msa0035590:CDS 50.0%
!! GACCACCTCAGTAATGGGTA+GGG - chr1_1:63824762-63824781 None:intergenic 50.0%
GTCATCGACCACCTCAGTAA+TGG - chr1_1:63824768-63824787 None:intergenic 50.0%
GGAGAATGGAAAGAGGTGAG+AGG - chr1_1:63823234-63823253 None:intergenic 50.0%
GTTCCAAGGAAAAGGGTTGG+AGG - chr1_1:63823294-63823313 None:intergenic 50.0%
CGGACACTACGATGTACTGA+AGG - chr1_1:63823359-63823378 None:intergenic 50.0%
CAACAGTGGCACCAACATTG+TGG - chr1_1:63823439-63823458 None:intergenic 50.0%
!! CACAATGTTGGTGCCACTGT+TGG + chr1_1:63823437-63823456 Msa0035590:CDS 50.0%
CTGGCGTGAATCTCCAATTG+GGG + chr1_1:63824225-63824244 Msa0035590:CDS 50.0%
TCCAATTGGGGTTGTTGCCT+TGG + chr1_1:63824237-63824256 Msa0035590:CDS 50.0%
GTTGCCTTGGCAATGATGTG+TGG + chr1_1:63824250-63824269 Msa0035590:CDS 50.0%
CCTTGGCAATGATGTGTGGA+GGG + chr1_1:63824254-63824273 Msa0035590:CDS 50.0%
CTTGGCAATGATGTGTGGAG+GGG + chr1_1:63824255-63824274 Msa0035590:CDS 50.0%
! GTCTTTTGTGGCAACAGTGG+TGG + chr1_1:63824733-63824752 Msa0035590:CDS 50.0%
!! GACCACCTCAGTAATGGGTA+GGG - chr1_1:63824762-63824781 None:intergenic 50.0%
GTCATCGACCACCTCAGTAA+TGG - chr1_1:63824768-63824787 None:intergenic 50.0%
GCACGGAGGAGAATGGAAAG+AGG - chr1_1:63823241-63823260 None:intergenic 55.0%
TGGTGGTTGTTGCCGGTGAA+CGG - chr1_1:63823268-63823287 None:intergenic 55.0%
! AAAAGGGTTGGAGGTGGTGG+TGG - chr1_1:63823285-63823304 None:intergenic 55.0%
AGGAAAAGGGTTGGAGGTGG+TGG - chr1_1:63823288-63823307 None:intergenic 55.0%
CCAAGGAAAAGGGTTGGAGG+TGG - chr1_1:63823291-63823310 None:intergenic 55.0%
! CCACCTCCAACCCTTTTCCT+TGG + chr1_1:63823288-63823307 Msa0035590:CDS 55.0%
!! GGTGCCACTGTTGGTGTTCT+TGG + chr1_1:63823446-63823465 Msa0035590:CDS 55.0%
! GCCACTGTTGGTGTTCTTGG+CGG + chr1_1:63823449-63823468 Msa0035590:CDS 55.0%
!! TGGTGTCACATGGTGATGGC+AGG + chr1_1:63823722-63823741 Msa0035590:intron 55.0%
!! GGTGTCACATGGTGATGGCA+GGG + chr1_1:63823723-63823742 Msa0035590:intron 55.0%
GCAGGGTCTGAGCAGAAAAC+TGG + chr1_1:63823740-63823759 Msa0035590:intron 55.0%
GCCAAGGCAACAACCCCAAT+TGG - chr1_1:63824241-63824260 None:intergenic 55.0%
GCCTTGGCAATGATGTGTGG+AGG + chr1_1:63824253-63824272 Msa0035590:CDS 55.0%
CCCTCCACACATCATTGCCA+AGG - chr1_1:63824257-63824276 None:intergenic 55.0%
GCAATGATGTGTGGAGGGGA+TGG + chr1_1:63824259-63824278 Msa0035590:CDS 55.0%
GGAGTCCCTACCCATTACTG+AGG + chr1_1:63824754-63824773 Msa0035590:CDS 55.0%
GTCCCTACCCATTACTGAGG+TGG + chr1_1:63824757-63824776 Msa0035590:CDS 55.0%
!! CGACCACCTCAGTAATGGGT+AGG - chr1_1:63824763-63824782 None:intergenic 55.0%
GCACGGAGGAGAATGGAAAG+AGG - chr1_1:63823241-63823260 None:intergenic 55.0%
TGGTGGTTGTTGCCGGTGAA+CGG - chr1_1:63823268-63823287 None:intergenic 55.0%
! AAAAGGGTTGGAGGTGGTGG+TGG - chr1_1:63823285-63823304 None:intergenic 55.0%
AGGAAAAGGGTTGGAGGTGG+TGG - chr1_1:63823288-63823307 None:intergenic 55.0%
CCAAGGAAAAGGGTTGGAGG+TGG - chr1_1:63823291-63823310 None:intergenic 55.0%
! CCACCTCCAACCCTTTTCCT+TGG + chr1_1:63823288-63823307 Msa0035590:CDS 55.0%
!! GGTGCCACTGTTGGTGTTCT+TGG + chr1_1:63823446-63823465 Msa0035590:CDS 55.0%
! GCCACTGTTGGTGTTCTTGG+CGG + chr1_1:63823449-63823468 Msa0035590:CDS 55.0%
!! TGGTGTCACATGGTGATGGC+AGG + chr1_1:63823722-63823741 Msa0035590:intron 55.0%
!! GGTGTCACATGGTGATGGCA+GGG + chr1_1:63823723-63823742 Msa0035590:intron 55.0%
GCAGGGTCTGAGCAGAAAAC+TGG + chr1_1:63823740-63823759 Msa0035590:intron 55.0%
GCCAAGGCAACAACCCCAAT+TGG - chr1_1:63824241-63824260 None:intergenic 55.0%
GCCTTGGCAATGATGTGTGG+AGG + chr1_1:63824253-63824272 Msa0035590:CDS 55.0%
CCCTCCACACATCATTGCCA+AGG - chr1_1:63824257-63824276 None:intergenic 55.0%
GCAATGATGTGTGGAGGGGA+TGG + chr1_1:63824259-63824278 Msa0035590:CDS 55.0%
GGAGTCCCTACCCATTACTG+AGG + chr1_1:63824754-63824773 Msa0035590:CDS 55.0%
GTCCCTACCCATTACTGAGG+TGG + chr1_1:63824757-63824776 Msa0035590:CDS 55.0%
!! CGACCACCTCAGTAATGGGT+AGG - chr1_1:63824763-63824782 None:intergenic 55.0%
TGGTTGTTGCCGGTGAACGG+CGG - chr1_1:63823265-63823284 None:intergenic 60.0%
!! GAGGTGGTGGTGGTTGTTGC+CGG - chr1_1:63823275-63823294 None:intergenic 60.0%
GCCGCCAAGAACACCAACAG+TGG - chr1_1:63823453-63823472 None:intergenic 60.0%
TGGTTGTTGCCGGTGAACGG+CGG - chr1_1:63823265-63823284 None:intergenic 60.0%
!! GAGGTGGTGGTGGTTGTTGC+CGG - chr1_1:63823275-63823294 None:intergenic 60.0%
GCCGCCAAGAACACCAACAG+TGG - chr1_1:63823453-63823472 None:intergenic 60.0%
CGGCGGTGCACGGAGGAGAA+TGG - chr1_1:63823248-63823267 None:intergenic 70.0%
CTCCGTGCACCGCCGTTCAC+CGG + chr1_1:63823253-63823272 Msa0035590:CDS 70.0%
TGCCGGTGAACGGCGGTGCA+CGG - chr1_1:63823258-63823277 None:intergenic 70.0%
CGGCGGTGCACGGAGGAGAA+TGG - chr1_1:63823248-63823267 None:intergenic 70.0%
CTCCGTGCACCGCCGTTCAC+CGG + chr1_1:63823253-63823272 Msa0035590:CDS 70.0%
TGCCGGTGAACGGCGGTGCA+CGG - chr1_1:63823258-63823277 None:intergenic 70.0%
CGGTGAACGGCGGTGCACGG+AGG - chr1_1:63823255-63823274 None:intergenic 75.0%
CGGTGAACGGCGGTGCACGG+AGG - chr1_1:63823255-63823274 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 63823109 63825127 63823109 ID=Msa0035590;Name=Msa0035590
chr1_1 mRNA 63823109 63825127 63823109 ID=Msa0035590-mRNA-1;Parent=Msa0035590;Name=Msa0035590-mRNA-1;_AED=0.15;_eAED=0.16;_QI=109|0.83|0.85|1|0.5|0.57|7|177|315
chr1_1 exon 63823109 63823529 63823109 ID=Msa0035590-mRNA-1:exon:20377;Parent=Msa0035590-mRNA-1
chr1_1 exon 63823744 63823824 63823744 ID=Msa0035590-mRNA-1:exon:20378;Parent=Msa0035590-mRNA-1
chr1_1 exon 63823936 63824072 63823936 ID=Msa0035590-mRNA-1:exon:20379;Parent=Msa0035590-mRNA-1
chr1_1 exon 63824165 63824280 63824165 ID=Msa0035590-mRNA-1:exon:20380;Parent=Msa0035590-mRNA-1
chr1_1 exon 63824388 63824502 63824388 ID=Msa0035590-mRNA-1:exon:20381;Parent=Msa0035590-mRNA-1
chr1_1 exon 63824658 63824920 63824658 ID=Msa0035590-mRNA-1:exon:20382;Parent=Msa0035590-mRNA-1
chr1_1 exon 63825027 63825127 63825027 ID=Msa0035590-mRNA-1:exon:20383;Parent=Msa0035590-mRNA-1
chr1_1 five_prime_UTR 63823109 63823217 63823109 ID=Msa0035590-mRNA-1:five_prime_utr;Parent=Msa0035590-mRNA-1
chr1_1 CDS 63823218 63823529 63823218 ID=Msa0035590-mRNA-1:cds;Parent=Msa0035590-mRNA-1
chr1_1 CDS 63823744 63823824 63823744 ID=Msa0035590-mRNA-1:cds;Parent=Msa0035590-mRNA-1
chr1_1 CDS 63823936 63824072 63823936 ID=Msa0035590-mRNA-1:cds;Parent=Msa0035590-mRNA-1
chr1_1 CDS 63824165 63824280 63824165 ID=Msa0035590-mRNA-1:cds;Parent=Msa0035590-mRNA-1
chr1_1 CDS 63824388 63824502 63824388 ID=Msa0035590-mRNA-1:cds;Parent=Msa0035590-mRNA-1
chr1_1 CDS 63824658 63824844 63824658 ID=Msa0035590-mRNA-1:cds;Parent=Msa0035590-mRNA-1
chr1_1 three_prime_UTR 63824845 63824920 63824845 ID=Msa0035590-mRNA-1:three_prime_utr;Parent=Msa0035590-mRNA-1
chr1_1 three_prime_UTR 63825027 63825127 63825027 ID=Msa0035590-mRNA-1:three_prime_utr;Parent=Msa0035590-mRNA-1
Gene Sequence

>Msa0035590

ATGACTCTCTTATCCTCTCACCTCTTTCCATTCTCCTCCGTGCACCGCCGTTCACCGGCAACAACCACCACCACCTCCAACCCTTTTCCTTGGAACAAACCCACAACAACAAACGACACTGTCAAGTTTTTGTATTCTCCTTCAGTACATCGTAGTGTCCGTTTAGATGAAAGATTTGTAACAAGATTTATTGTCCCTGCAAATGCTCAAGATCTAATCCACAATGTTGGTGCCACTGTTGGTGTTCTTGGCGGCGCTTATGCTCTTGTTTTTTCTTTTGATGATCTAACTAGAAGAAACATCATTGATCAAGGTCTGAGCAGAAAACTGGTCCATATATTATCAGGATTGCTTTTTCTGGTTTCATGGCCAATTTTCAGGTACCCCATTTCTGATAGCAACTCCCTTGAAGCTCGTTACTTTGCTGCTTTTGTTCCTCTTGTGAATTTCTTGAGGCTTTTGGTGAATGGTCTCTCATTGGTTACTGATCCAGGACTCATCAAATCTGTGACTAGGAAAGGAGATCCAAAAGAATTGCTAAGAGGTCCCCTTTATTATGTTGGGATATTAATGTTGAGTGCTATTGTGTTCTGGCGTGAATCTCCAATTGGGGTTGTTGCCTTGGCAATGATGTGTGGAGGGGATGGTGTAGCTGATATCATTGGTAGAAGATATGGGTCAATGAAGATTCCTTACAACCAAAAAAAGAGTTGGGCTGGTAGCATAGCAATGCTTATATTTGGATTCTTGGTTTCAATTGGGATGCTGTACTACTATTCAGCTCTAGGACATGTGCAGTTTGATTTGTGGAACGTTGTGCCAAGAGTTGCTTTTGTGTCTTTTGTGGCAACAGTGGTGGAGTCCCTACCCATTACTGAGGTGGTCGATGACAACATTTCTGTTCCACTAGTAACTATGGCAGTGACTTTTTTAACTTTCCATCATTAA

Protein sequence

>Msa0035590

MTLLSSHLFPFSSVHRRSPATTTTTSNPFPWNKPTTTNDTVKFLYSPSVHRSVRLDERFVTRFIVPANAQDLIHNVGATVGVLGGAYALVFSFDDLTRRNIIDQGLSRKLVHILSGLLFLVSWPIFRYPISDSNSLEARYFAAFVPLVNFLRLLVNGLSLVTDPGLIKSVTRKGDPKELLRGPLYYVGILMLSAIVFWRESPIGVVALAMMCGGDGVADIIGRRYGSMKIPYNQKKSWAGSIAMLIFGFLVSIGMLYYYSALGHVQFDLWNVVPRVAFVSFVATVVESLPITEVVDDNISVPLVTMAVTFLTFHH*