AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0237650


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0237650 MtrunA17_Chr2g0287161 98.138 376 6 1 1 376 1 375 0.0 739
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0237650 AT3G21580.1 65.460 359 119 2 18 376 38 391 3.88e-157 447

Find 101 sgRNAs with CRISPR-Local

Find 344 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCACTGGATAATCGAATTT+TGG 0.104689 2_2:+10922206 None:intergenic
ACTTGACTTTGCTTTCAATT+TGG 0.164659 2_2:-10920924 Msa0237650:CDS
TAAATCTCAATGACAGTAAA+AGG 0.188453 2_2:+10920127 None:intergenic
CCTTTCCTCGTAAAGGTTAA+TGG 0.195689 2_2:+10920424 None:intergenic
CTTGACTTTGCTTTCAATTT+GGG 0.197389 2_2:-10920923 Msa0237650:CDS
TATTGATCCACGAGTTAAAT+TGG 0.247372 2_2:-10921976 Msa0237650:intron
TTAGAATTGGATTTCTCTTC+AGG 0.251980 2_2:+10922159 None:intergenic
TTCTTGTCAGAATCATCTTT+TGG 0.254029 2_2:-10917681 Msa0237650:CDS
CTCACCTTCCAAGTATTTCT+TGG 0.254417 2_2:+10920895 None:intergenic
TAACCATGCCACTTTCCTTT+TGG 0.256389 2_2:-10922264 Msa0237650:CDS
TCGCATATAATTATGCGATT+TGG 0.287874 2_2:-10920958 Msa0237650:CDS
TTGTGTCTCGTAGGGTAAAT+TGG 0.290091 2_2:-10918884 Msa0237650:CDS
AATCTTCCTATATCTTTAAC+AGG 0.301642 2_2:-10920475 Msa0237650:CDS
GTTAAAGATATAGGAAGATT+TGG 0.313120 2_2:+10920478 None:intergenic
AAAGCTTCAAAAGATGATAA+TGG 0.324391 2_2:-10922131 Msa0237650:CDS
GGAATCCACTTAGACCAATT+TGG 0.327874 2_2:+10922101 None:intergenic
AAAAGCAGTGGTGGTGGTGG+TGG 0.329719 2_2:+10922230 None:intergenic
CAAAGTTGAAAACAGATGTT+TGG 0.330048 2_2:-10917317 Msa0237650:three_prime_UTR
TTTCTGTTTATAGGATCAAT+TGG 0.339543 2_2:-10920611 Msa0237650:intron
GAAGCTTTAATTCTTAGAAT+TGG 0.366275 2_2:+10922146 None:intergenic
ATGTGTTAGTGTTGTAAATT+CGG 0.368515 2_2:-10917155 Msa0237650:three_prime_UTR
AATGCAGATGCTAGTTGTTC+AGG 0.374990 2_2:+10920210 None:intergenic
ATAATTATATGCGACCTTGC+CGG 0.385006 2_2:+10920967 None:intergenic
GCATTGTTATTCATAACATT+AGG 0.385857 2_2:-10920568 Msa0237650:CDS
TCATATGTAATCTCAAAGTT+AGG 0.391690 2_2:-10920448 Msa0237650:CDS
TTATGTAAACAATGTATGTT+TGG 0.396346 2_2:-10916927 Msa0237650:three_prime_UTR
GAATAACCTGTTAAAGATAT+AGG 0.401064 2_2:+10920469 None:intergenic
AAGCTTCAAAAGATGATAAT+GGG 0.403069 2_2:-10922130 Msa0237650:CDS
GGGAAAAGCAGTGGTGGTGG+TGG 0.408139 2_2:+10922227 None:intergenic
AGTGGCATGGTTACAGTTCA+TGG 0.411818 2_2:+10922274 None:intergenic
TTGAACTTGACAGTTGTCAT+AGG 0.416477 2_2:-10917636 Msa0237650:CDS
TGTGTTAGTGTTGTAAATTC+GGG 0.423460 2_2:-10917154 Msa0237650:three_prime_UTR
ATCAACTTCAACAATAATTC+AGG 0.427195 2_2:+10916990 None:intergenic
TTTAGTTCTGGTTGTTCTAC+CGG 0.429317 2_2:-10920986 Msa0237650:CDS
ATAATGGGCAATCACCAAAT+TGG 0.433105 2_2:-10922115 Msa0237650:CDS
TGCTAGTTGTTCAGGGGTTG+TGG 0.434463 2_2:+10920218 None:intergenic
TTGGAAACAACTGACTGTTA+TGG 0.435468 2_2:-10918865 Msa0237650:CDS
AGCCCGGTCACTGCAGGTGG+TGG 0.444595 2_2:+10920502 None:intergenic
GTTATTCATAACATTAGGAC+TGG 0.445479 2_2:-10920563 Msa0237650:CDS
TTCATGGGTGTTGAATTTGA+TGG 0.459035 2_2:+10922290 None:intergenic
ATGCAGATGCTAGTTGTTCA+GGG 0.463241 2_2:+10920211 None:intergenic
CCATTAACCTTTACGAGGAA+AGG 0.463836 2_2:-10920424 Msa0237650:CDS
TTCTGTTTATAGGATCAATT+GGG 0.463911 2_2:-10920610 Msa0237650:intron
CAATTCCCAATGCAATGTTC+CGG 0.469874 2_2:+10918904 None:intergenic
ACTCCACCACCTGCAGTGAC+CGG 0.471747 2_2:-10920505 Msa0237650:CDS
CAGGTCCGGAACATTGCATT+GGG 0.475625 2_2:-10918909 Msa0237650:CDS
TTTGGAAGCCCGGTCACTGC+AGG 0.479138 2_2:+10920496 None:intergenic
GATAATATTAATGCTGGTAA+AGG 0.482003 2_2:-10917097 Msa0237650:three_prime_UTR
CCATGCAGAGCAAATTTCCC+AGG 0.488862 2_2:-10918115 Msa0237650:intron
AGATAATCCTTTCCTCGTAA+AGG 0.489400 2_2:+10920417 None:intergenic
GAAGAAACAAACTGTCCAAT+GGG 0.493850 2_2:+10922020 None:intergenic
TTCTGGTTGTTCTACCGGCA+AGG 0.499647 2_2:-10920981 Msa0237650:CDS
GCAGGTCCGGAACATTGCAT+TGG 0.501141 2_2:-10918910 Msa0237650:intron
TTTGGGAAAAGCAGTGGTGG+TGG 0.501906 2_2:+10922224 None:intergenic
TTGTCGTATTACACAATTCG+TGG 0.502618 2_2:-10917244 Msa0237650:three_prime_UTR
GACGTCCCCTTTAAAACCTC+TGG 0.504609 2_2:+10917722 None:intergenic
AGTAAGGATAATATTAATGC+TGG 0.508642 2_2:-10917103 Msa0237650:three_prime_UTR
CTCCACCACCTGCAGTGACC+GGG 0.509501 2_2:-10920504 Msa0237650:CDS
AGTGCTACTGCTAGTCCCAT+TGG 0.520144 2_2:-10922035 Msa0237650:CDS
TTGCTTACCAATTTAACTCG+TGG 0.524511 2_2:+10921969 None:intergenic
GGGTTCTACCAAGAAATACT+TGG 0.529184 2_2:-10920903 Msa0237650:CDS
GAGAAATAAACCACACACTC+TGG 0.536461 2_2:-10922319 Msa0237650:five_prime_UTR
CATTGGGAATTGTGTCTCGT+AGG 0.537291 2_2:-10918893 Msa0237650:CDS
AAATCTCAATGACAGTAAAA+GGG 0.541790 2_2:+10920128 None:intergenic
ATGGGTGTTGAATTTGATGG+TGG 0.546678 2_2:+10922293 None:intergenic
TATAGGAAGATTTGGAAGCC+CGG 0.550540 2_2:+10920486 None:intergenic
GCTCTTACCAGTGCTAAAAG+TGG 0.557816 2_2:+10917566 None:intergenic
GGAAGCCCGGTCACTGCAGG+TGG 0.561132 2_2:+10920499 None:intergenic
ATGCTTCCTCTGAGATACAT+AGG 0.562638 2_2:-10920177 Msa0237650:CDS
ATTGGGAATTGTGTCTCGTA+GGG 0.563749 2_2:-10918892 Msa0237650:CDS
TGTGTAATACGACAATTATG+TGG 0.564581 2_2:+10917252 None:intergenic
TTATTCATAACATTAGGACT+GGG 0.564776 2_2:-10920562 Msa0237650:CDS
ACATTAGGACTGGGTTCAGA+TGG 0.568358 2_2:-10920553 Msa0237650:CDS
ATAGAGTGAAGAAACGTAGT+GGG 0.568949 2_2:+10921996 None:intergenic
ACGAGGAAAGGATTATCTGT+AGG 0.571765 2_2:-10920412 Msa0237650:CDS
TATTATGCAGGTTCTTGACA+TGG 0.573100 2_2:-10917398 Msa0237650:intron
CCTGGGAAATTTGCTCTGCA+TGG 0.573721 2_2:+10918115 None:intergenic
GTGGTGGCAATGAAACCAAA+AGG 0.578849 2_2:+10922249 None:intergenic
GGAAGAAACAAACTGTCCAA+TGG 0.579860 2_2:+10922019 None:intergenic
CAATGAAACCAAAAGGAAAG+TGG 0.587121 2_2:+10922256 None:intergenic
TGTCGTATTACACAATTCGT+GGG 0.587306 2_2:-10917243 Msa0237650:three_prime_UTR
AATCACCAAATTGGTCTAAG+TGG 0.592914 2_2:-10922106 Msa0237650:CDS
GTTCTTGACTGAACAAGTGC+AGG 0.597601 2_2:+10920526 None:intergenic
GTGGCATGGTTACAGTTCAT+GGG 0.598022 2_2:+10922275 None:intergenic
AACTAGCATCTGCATTGCGA+TGG 0.598048 2_2:-10920203 Msa0237650:CDS
TGGTCTAAGTGGATTCCCAC+TGG 0.598345 2_2:-10922095 Msa0237650:CDS
TGGGTGTTGAATTTGATGGT+GGG 0.603079 2_2:+10922294 None:intergenic
ATGGTGGGAACCAGAGTGTG+TGG 0.608846 2_2:+10922309 None:intergenic
GTTCAGGGGTTGTGGTTGTG+AGG 0.620370 2_2:+10920226 None:intergenic
AAACCAAAAGGAAAGTGGCA+TGG 0.622480 2_2:+10922261 None:intergenic
ATCAGCAGCAAAAGAGCCAG+TGG 0.624944 2_2:+10922079 None:intergenic
TGCAGATGCTAGTTGTTCAG+GGG 0.627683 2_2:+10920212 None:intergenic
TCTACCAAGAAATACTTGGA+AGG 0.639774 2_2:-10920899 Msa0237650:intron
AATAGAGTGAAGAAACGTAG+TGG 0.659171 2_2:+10921995 None:intergenic
CTGCAGGCTATGATAGCCAG+AGG 0.665465 2_2:-10917738 Msa0237650:intron
TCAGCAGCAAAAGAGCCAGT+GGG 0.670468 2_2:+10922080 None:intergenic
TAGGTCCATTAACCTTTACG+AGG 0.671782 2_2:-10920429 Msa0237650:CDS
TGTATCTTTCTCATTAGACA+AGG 0.672996 2_2:+10917589 None:intergenic
TAGAGTGAAGAAACGTAGTG+GGG 0.692405 2_2:+10921997 None:intergenic
GATACGCCTATGTATCTCAG+AGG 0.705878 2_2:+10920171 None:intergenic
AGAGTGAAGAAACGTAGTGG+GGG 0.708471 2_2:+10921998 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACAATATAATTTATTTATGA+AGG - chr2_2:10918979-10918998 Msa0237650:intron 10.0%
!!! TTTTTGTTTGTATTATTAAT+TGG - chr2_2:10919384-10919403 Msa0237650:intron 10.0%
!!! TTTTATTTTGTATTATTAGT+TGG + chr2_2:10920014-10920033 None:intergenic 10.0%
!! CAAAAAAAAAAAAAAATCTT+TGG - chr2_2:10921760-10921779 Msa0237650:intron 10.0%
!! AAAAAAAAAAAAAATCTTTG+GGG - chr2_2:10921762-10921781 Msa0237650:intron 10.0%
!!! TATCAATTTTTATGTTTAGT+CGG + chr2_2:10917503-10917522 None:intergenic 15.0%
!! TAAAAAATATAGTGAATAAG+AGG + chr2_2:10918405-10918424 None:intergenic 15.0%
!!! CTTGAATTTATTTTGATTTT+GGG + chr2_2:10919839-10919858 None:intergenic 15.0%
!!! ACTTGAATTTATTTTGATTT+TGG + chr2_2:10919840-10919859 None:intergenic 15.0%
!! AACAATAATAAAACATAAAG+GGG + chr2_2:10921187-10921206 None:intergenic 15.0%
!! CAACAATAATAAAACATAAA+GGG + chr2_2:10921188-10921207 None:intergenic 15.0%
!!! TTTTTCTTCTATCATTAATT+CGG + chr2_2:10922125-10922144 None:intergenic 15.0%
!!! TATTAATTCAATACAGTTTT+TGG + chr2_2:10922236-10922255 None:intergenic 15.0%
!! TTTCATGAATTATAAAGCTT+TGG - chr2_2:10917845-10917864 Msa0237650:intron 20.0%
!!! TAATTGCTAACATTTTCTTA+AGG + chr2_2:10918126-10918145 None:intergenic 20.0%
!!! TATATTTGAATAGTTTGTCT+TGG - chr2_2:10918177-10918196 Msa0237650:intron 20.0%
!!! TATTCTCTAGTTTCATAATT+TGG - chr2_2:10918450-10918469 Msa0237650:intron 20.0%
!!! ATTCTCTAGTTTCATAATTT+GGG - chr2_2:10918451-10918470 Msa0237650:intron 20.0%
!! CTATAAACAGAAATTGAATT+AGG + chr2_2:10918632-10918651 None:intergenic 20.0%
!! CTAATTCAATTTCTGTTTAT+AGG - chr2_2:10918630-10918649 Msa0237650:intron 20.0%
!!! CTTTGATTTACAGTTATTTT+AGG - chr2_2:10918919-10918938 Msa0237650:intron 20.0%
!! CATTGTAATTATAACTTTAG+AGG - chr2_2:10919247-10919266 Msa0237650:intron 20.0%
!!! TAGTACTAATTTTTTTACCA+AGG + chr2_2:10919606-10919625 None:intergenic 20.0%
!! TGAAAGAACATATAATTAGT+GGG + chr2_2:10919694-10919713 None:intergenic 20.0%
!!! AAGACACATGTAATTTTTAA+AGG - chr2_2:10920888-10920907 Msa0237650:intron 20.0%
!!! AAAACTTAATTTGGAATTCT+AGG + chr2_2:10920915-10920934 None:intergenic 20.0%
!! ACAATAATAAAACATAAAGG+GGG + chr2_2:10921186-10921205 None:intergenic 20.0%
!! GCAACAATAATAAAACATAA+AGG + chr2_2:10921189-10921208 None:intergenic 20.0%
!! ATATTCACCAAATTTAAACT+GGG + chr2_2:10921245-10921264 None:intergenic 20.0%
!! AATATTCACCAAATTTAAAC+TGG + chr2_2:10921246-10921265 None:intergenic 20.0%
!! TTATGTAAACAATGTATGTT+TGG - chr2_2:10922323-10922342 Msa0237650:five_prime_UTR 20.0%
!! AGTGTTAAAAGAGTTTTCTT+TGG + chr2_2:10917068-10917087 None:intergenic 25.0%
!! GAAGCTTTAATTCTTAGAAT+TGG + chr2_2:10917107-10917126 None:intergenic 25.0%
! AAAGCTTCAAAAGATGATAA+TGG - chr2_2:10917119-10917138 Msa0237650:three_prime_UTR 25.0%
! AAGCTTCAAAAGATGATAAT+GGG - chr2_2:10917120-10917139 Msa0237650:three_prime_UTR 25.0%
!!! GGTGTTTTAGTAAGATTTTA+TGG - chr2_2:10917384-10917403 Msa0237650:three_prime_UTR 25.0%
!!! GTTTTAGTAAGATTTTATGG+AGG - chr2_2:10917387-10917406 Msa0237650:three_prime_UTR 25.0%
! AATTATAGACACAAGTTCAT+TGG + chr2_2:10917442-10917461 None:intergenic 25.0%
!!! TATGCTTTTTATTCTAGCTT+GGG - chr2_2:10917531-10917550 Msa0237650:intron 25.0%
!!! TGTTTTAATTTTGGGGTTTT+GGG - chr2_2:10917569-10917588 Msa0237650:intron 25.0%
! CTCTCTTTGATTACAAATAA+TGG + chr2_2:10917599-10917618 None:intergenic 25.0%
! TACTACATAAGTCATATTGT+AGG + chr2_2:10917642-10917661 None:intergenic 25.0%
!! TATTTCAAAGACTAGTTAGT+TGG + chr2_2:10917921-10917940 None:intergenic 25.0%
!!! CTAACTAGTCTTTGAAATAT+AGG - chr2_2:10917922-10917941 Msa0237650:intron 25.0%
!!! TAGTCTTTGAAATATAGGAT+AGG - chr2_2:10917927-10917946 Msa0237650:intron 25.0%
!! GGAAAATTTTATTATCCCTT+TGG + chr2_2:10918013-10918032 None:intergenic 25.0%
!!! TATTTTTTAACCGTCATGTT+TGG - chr2_2:10918416-10918435 Msa0237650:intron 25.0%
! TGATAGACTTATTTATGAGA+AGG + chr2_2:10918528-10918547 None:intergenic 25.0%
! TTTCTGTTTATAGGATCAAT+TGG - chr2_2:10918639-10918658 Msa0237650:intron 25.0%
! TTCTGTTTATAGGATCAATT+GGG - chr2_2:10918640-10918659 Msa0237650:intron 25.0%
!! GCATTGTTATTCATAACATT+AGG - chr2_2:10918682-10918701 Msa0237650:intron 25.0%
! TTATTCATAACATTAGGACT+GGG - chr2_2:10918688-10918707 Msa0237650:intron 25.0%
! GTTAAAGATATAGGAAGATT+TGG + chr2_2:10918775-10918794 None:intergenic 25.0%
! AATCTTCCTATATCTTTAAC+AGG - chr2_2:10918775-10918794 Msa0237650:intron 25.0%
! GAATAACCTGTTAAAGATAT+AGG + chr2_2:10918784-10918803 None:intergenic 25.0%
! TCATATGTAATCTCAAAGTT+AGG - chr2_2:10918802-10918821 Msa0237650:intron 25.0%
! TGTAAATCAAAGATAAAAGC+AGG + chr2_2:10918911-10918930 None:intergenic 25.0%
!!! TACAGTTATTTTAGGACTTT+TGG - chr2_2:10918927-10918946 Msa0237650:intron 25.0%
! AAATCTCAATGACAGTAAAA+GGG + chr2_2:10919125-10919144 None:intergenic 25.0%
! TAAATCTCAATGACAGTAAA+AGG + chr2_2:10919126-10919145 None:intergenic 25.0%
! CAATGTTTACTACTATAATC+TGG + chr2_2:10919232-10919251 None:intergenic 25.0%
!! TATAACTTTAGAGGAATGAT+AGG - chr2_2:10919256-10919275 Msa0237650:intron 25.0%
!! ATAACTTTAGAGGAATGATA+GGG - chr2_2:10919257-10919276 Msa0237650:intron 25.0%
!!! ACTTCCAATTTGTTATCTTT+GGG + chr2_2:10919528-10919547 None:intergenic 25.0%
!!! AACTTCCAATTTGTTATCTT+TGG + chr2_2:10919529-10919548 None:intergenic 25.0%
! GAAAGAACATATAATTAGTG+GGG + chr2_2:10919693-10919712 None:intergenic 25.0%
! GTGAAAGAACATATAATTAG+TGG + chr2_2:10919695-10919714 None:intergenic 25.0%
! AAAAGTTATGAAGAATCCTA+TGG + chr2_2:10920162-10920181 None:intergenic 25.0%
! AATTTGTCAAACACTATCAA+AGG - chr2_2:10920192-10920211 Msa0237650:CDS 25.0%
! AAATTTAAGCCTAATTGCTT+AGG + chr2_2:10920274-10920293 None:intergenic 25.0%
!!! CAATATTTTTTTATGATGCC+TGG + chr2_2:10920456-10920475 None:intergenic 25.0%
! ATTGTGTAAGCATTCAAAAT+TGG - chr2_2:10920598-10920617 Msa0237650:CDS 25.0%
! AATGAAACAGATCACTAATT+CGG + chr2_2:10920664-10920683 None:intergenic 25.0%
! GTTTCATTTATCCCAATATT+TGG - chr2_2:10920676-10920695 Msa0237650:intron 25.0%
! ATCCTAAATAAAATCACCAA+AGG - chr2_2:10920769-10920788 Msa0237650:intron 25.0%
!!! CTGCATTCTAAAACTTAATT+TGG + chr2_2:10920924-10920943 None:intergenic 25.0%
!!! CAAATTAAGTTTTAGAATGC+AGG - chr2_2:10920922-10920941 Msa0237650:CDS 25.0%
! GGAAAAATATCATTAGAATG+AGG + chr2_2:10921054-10921073 None:intergenic 25.0%
!!! AAATATTTTTGAAGATGCGA+CGG + chr2_2:10921111-10921130 None:intergenic 25.0%
! TATTTATCATAAAATCCTGC+AGG - chr2_2:10921496-10921515 Msa0237650:intron 25.0%
! ACAATGTAGATATATTATGC+AGG - chr2_2:10921840-10921859 Msa0237650:intron 25.0%
! ATGTGTTAGTGTTGTAAATT+CGG - chr2_2:10922095-10922114 Msa0237650:CDS 25.0%
! AGTAAGGATAATATTAATGC+TGG - chr2_2:10922147-10922166 Msa0237650:CDS 25.0%
! GATAATATTAATGCTGGTAA+AGG - chr2_2:10922153-10922172 Msa0237650:CDS 25.0%
! ATCAACTTCAACAATAATTC+AGG + chr2_2:10922263-10922282 None:intergenic 25.0%
TTAGAATTGGATTTCTCTTC+AGG + chr2_2:10917094-10917113 None:intergenic 30.0%
TATTGATCCACGAGTTAAAT+TGG - chr2_2:10917274-10917293 Msa0237650:three_prime_UTR 30.0%
! ATTCATGCTTGTGCATTTTT+AGG - chr2_2:10917363-10917382 Msa0237650:three_prime_UTR 30.0%
!! CTATGCTTTTTATTCTAGCT+TGG - chr2_2:10917530-10917549 Msa0237650:intron 30.0%
!!! ATGGAGGACTGTTTTAATTT+TGG - chr2_2:10917560-10917579 Msa0237650:intron 30.0%
!!! TGGAGGACTGTTTTAATTTT+GGG - chr2_2:10917561-10917580 Msa0237650:intron 30.0%
!!! CTGTTTTAATTTTGGGGTTT+TGG - chr2_2:10917568-10917587 Msa0237650:intron 30.0%
CAATATGACTTATGTAGTAC+TGG - chr2_2:10917643-10917662 Msa0237650:CDS 30.0%
TTGTTGTGGATACATGTTAA+AGG - chr2_2:10918057-10918076 Msa0237650:intron 30.0%
! AATAGTTTGTCTTGGCTTAT+TGG - chr2_2:10918185-10918204 Msa0237650:intron 30.0%
! TTACATGTGTTTCTGTTCTT+TGG - chr2_2:10918209-10918228 Msa0237650:intron 30.0%
! TCTTTGGTAATCAATTAGTG+TGG - chr2_2:10918225-10918244 Msa0237650:intron 30.0%
!! ATCAATTAGTGTGGTTTTAC+AGG - chr2_2:10918234-10918253 Msa0237650:intron 30.0%
TCGCATATAATTATGCGATT+TGG - chr2_2:10918292-10918311 Msa0237650:intron 30.0%
ACTTGACTTTGCTTTCAATT+TGG - chr2_2:10918326-10918345 Msa0237650:intron 30.0%
CTTGACTTTGCTTTCAATTT+GGG - chr2_2:10918327-10918346 Msa0237650:intron 30.0%
GAATAAGAGGATATAAGCAA+TGG + chr2_2:10918392-10918411 None:intergenic 30.0%
GAAAAAACAACCAAACATGA+CGG + chr2_2:10918429-10918448 None:intergenic 30.0%
GTTATTCATAACATTAGGAC+TGG - chr2_2:10918687-10918706 Msa0237650:intron 30.0%
!!! TATCAGTCTAGTTTTTGATG+AGG - chr2_2:10919144-10919163 Msa0237650:intron 30.0%
TTTCACATTACTATGTTGAG+TGG - chr2_2:10919183-10919202 Msa0237650:intron 30.0%
TTCACATTACTATGTTGAGT+GGG - chr2_2:10919184-10919203 Msa0237650:intron 30.0%
! GTGATGTGTCATTATTAGAT+TGG + chr2_2:10919314-10919333 None:intergenic 30.0%
CAAAATAGATGTTTGACAGT+GGG + chr2_2:10919502-10919521 None:intergenic 30.0%
ACAAAATAGATGTTTGACAG+TGG + chr2_2:10919503-10919522 None:intergenic 30.0%
GTTTCCCAAAGATAACAAAT+TGG - chr2_2:10919521-10919540 Msa0237650:intron 30.0%
TGATGAATCACTATGTGAAT+CGG + chr2_2:10919656-10919675 None:intergenic 30.0%
ATTCACATAGTGATTCATCA+GGG - chr2_2:10919656-10919675 Msa0237650:intron 30.0%
CTAATTGCTTAGGTTCAATT+GGG + chr2_2:10920264-10920283 None:intergenic 30.0%
!! TATCCTGATTATTTTGTTGC+AGG - chr2_2:10920322-10920341 Msa0237650:intron 30.0%
! ACTGTGCATAGATCTTATTT+AGG - chr2_2:10920545-10920564 Msa0237650:CDS 30.0%
! TTTTGAATGCTTACACAATG+TGG + chr2_2:10920597-10920616 None:intergenic 30.0%
! TTATCCCAATATTTGGAGTT+TGG - chr2_2:10920683-10920702 Msa0237650:intron 30.0%
!! GATTTTATTTAGGATCAGAC+TGG + chr2_2:10920764-10920783 None:intergenic 30.0%
!! TGCCTTTGGTGATTTTATTT+AGG + chr2_2:10920774-10920793 None:intergenic 30.0%
ACAAATAACTTTCATGCCTT+TGG + chr2_2:10920788-10920807 None:intergenic 30.0%
AAACTGTGGAGTCATATAAA+GGG + chr2_2:10921075-10921094 None:intergenic 30.0%
AAAACTGTGGAGTCATATAA+AGG + chr2_2:10921076-10921095 None:intergenic 30.0%
GAAGTAGTTAAAGAAAACTG+TGG + chr2_2:10921089-10921108 None:intergenic 30.0%
CAACACAAACAAATTTCTGA+TGG + chr2_2:10921283-10921302 None:intergenic 30.0%
! TTCTTGTCAGAATCATCTTT+TGG - chr2_2:10921569-10921588 Msa0237650:intron 30.0%
! TCTTGTCAGAATCATCTTTT+GGG - chr2_2:10921570-10921589 Msa0237650:intron 30.0%
TGTATCTTTCTCATTAGACA+AGG + chr2_2:10921664-10921683 None:intergenic 30.0%
! AAAAAAAATCTTTGGGGACA+AGG - chr2_2:10921768-10921787 Msa0237650:intron 30.0%
CAAAGTTGAAAACAGATGTT+TGG - chr2_2:10921933-10921952 Msa0237650:intron 30.0%
TGTGTAATACGACAATTATG+TGG + chr2_2:10922001-10922020 None:intergenic 30.0%
TGTGTTAGTGTTGTAAATTC+GGG - chr2_2:10922096-10922115 Msa0237650:CDS 30.0%
TGATAGAAGAAAAAGCAGTA+AGG - chr2_2:10922131-10922150 Msa0237650:CDS 30.0%
!! TTCATGGGTGTTGAATTTGA+TGG + chr2_2:10916963-10916982 None:intergenic 35.0%
CAATGAAACCAAAAGGAAAG+TGG + chr2_2:10916997-10917016 None:intergenic 35.0%
! GCACTGGATAATCGAATTTT+GGG + chr2_2:10917046-10917065 None:intergenic 35.0%
! AAAAGAGTTTTCTTTGGCAC+TGG + chr2_2:10917062-10917081 None:intergenic 35.0%
!! ATAATGGGCAATCACCAAAT+TGG - chr2_2:10917135-10917154 Msa0237650:three_prime_UTR 35.0%
! AATCACCAAATTGGTCTAAG+TGG - chr2_2:10917144-10917163 Msa0237650:three_prime_UTR 35.0%
GAAGAAACAAACTGTCCAAT+GGG + chr2_2:10917233-10917252 None:intergenic 35.0%
ATAGAGTGAAGAAACGTAGT+GGG + chr2_2:10917257-10917276 None:intergenic 35.0%
AATAGAGTGAAGAAACGTAG+TGG + chr2_2:10917258-10917277 None:intergenic 35.0%
TTGCTTACCAATTTAACTCG+TGG + chr2_2:10917284-10917303 None:intergenic 35.0%
! TGGTAAGCAAATTTGTTTCG+TGG - chr2_2:10917294-10917313 Msa0237650:three_prime_UTR 35.0%
! GGTAAGCAAATTTGTTTCGT+GGG - chr2_2:10917295-10917314 Msa0237650:three_prime_UTR 35.0%
!!! TATGGAGGAGTGTTTTAGTT+TGG - chr2_2:10917402-10917421 Msa0237650:intron 35.0%
!!! ATGGAGGAGTGTTTTAGTTT+GGG - chr2_2:10917403-10917422 Msa0237650:intron 35.0%
!!! GTGTTTTAGTTTGGGAGTTT+TGG - chr2_2:10917411-10917430 Msa0237650:intron 35.0%
!!! GGAGGACTGTTTTAATTTTG+GGG - chr2_2:10917562-10917581 Msa0237650:intron 35.0%
!! TTGGTGGATCACATTTTACA+AGG + chr2_2:10917902-10917921 None:intergenic 35.0%
! TTCAAAGACTAGTTAGTTGG+TGG + chr2_2:10917918-10917937 None:intergenic 35.0%
TTTGGCGAACATGAAATATG+TGG + chr2_2:10917995-10918014 None:intergenic 35.0%
ACATATTTCATGTTCGCCAA+AGG - chr2_2:10917994-10918013 Msa0237650:intron 35.0%
CATATTTCATGTTCGCCAAA+GGG - chr2_2:10917995-10918014 Msa0237650:intron 35.0%
TGGATACATGTTAAAGGTGA+AGG - chr2_2:10918063-10918082 Msa0237650:intron 35.0%
GGATACATGTTAAAGGTGAA+GGG - chr2_2:10918064-10918083 Msa0237650:intron 35.0%
TAGTGAAACAATTGTGTAGC+TGG - chr2_2:10918154-10918173 Msa0237650:CDS 35.0%
!! TTAGTGTGGTTTTACAGGTA+TGG - chr2_2:10918239-10918258 Msa0237650:intron 35.0%
!! TTTAGTTCTGGTTGTTCTAC+CGG - chr2_2:10918264-10918283 Msa0237650:intron 35.0%
ATAATTATATGCGACCTTGC+CGG + chr2_2:10918286-10918305 None:intergenic 35.0%
TCTACCAAGAAATACTTGGA+AGG - chr2_2:10918351-10918370 Msa0237650:intron 35.0%
TCTATCAAGTCAAAACTGCT+TGG - chr2_2:10918541-10918560 Msa0237650:intron 35.0%
ATTTGTAAGCAAATAGCCAG+TGG + chr2_2:10918567-10918586 None:intergenic 35.0%
AGATAATCCTTTCCTCGTAA+AGG + chr2_2:10918836-10918855 None:intergenic 35.0%
!! TTTTGGAGAATTGGAGAAGA+GGG + chr2_2:10919431-10919450 None:intergenic 35.0%
!!! TTGATGCAGTTTTGGAGAAT+TGG + chr2_2:10919440-10919459 None:intergenic 35.0%
GATTCACATAGTGATTCATC+AGG - chr2_2:10919655-10919674 Msa0237650:intron 35.0%
GAACATATAATTAGTGGGGT+TGG + chr2_2:10919689-10919708 None:intergenic 35.0%
TCACGAGAATGTTGATATGT+CGG - chr2_2:10919894-10919913 Msa0237650:intron 35.0%
! AATGGGTCATGTGTCATTAT+TGG - chr2_2:10920087-10920106 Msa0237650:intron 35.0%
! GTCATGTGTCATTATTGGAT+TGG - chr2_2:10920092-10920111 Msa0237650:intron 35.0%
! TGTCATTATTGGATTGGACT+TGG - chr2_2:10920098-10920117 Msa0237650:intron 35.0%
CCTAATTGCTTAGGTTCAAT+TGG + chr2_2:10920265-10920284 None:intergenic 35.0%
CCAATTGAACCTAAGCAATT+AGG - chr2_2:10920262-10920281 Msa0237650:intron 35.0%
!! TGATTATTTTGTTGCAGGTC+CGG - chr2_2:10920327-10920346 Msa0237650:intron 35.0%
TTGGAAACAACTGACTGTTA+TGG - chr2_2:10920385-10920404 Msa0237650:CDS 35.0%
GGAACACAGATAAGAAGTTT+AGG + chr2_2:10920487-10920506 None:intergenic 35.0%
CAGTCCAAACTCCAAATATT+GGG + chr2_2:10920690-10920709 None:intergenic 35.0%
CATGTGTCTTTAAGTAGTAC+AGG + chr2_2:10920878-10920897 None:intergenic 35.0%
ATGTTATGTGGTAGGTAGTT+TGG - chr2_2:10920954-10920973 Msa0237650:CDS 35.0%
TTCCCAACCCAGTTTAAATT+TGG - chr2_2:10921235-10921254 Msa0237650:intron 35.0%
CACCAAATTTAAACTGGGTT+GGG + chr2_2:10921240-10921259 None:intergenic 35.0%
TCACCAAATTTAAACTGGGT+TGG + chr2_2:10921241-10921260 None:intergenic 35.0%
!! TTTCTAGAACACAGCATTGT+TGG + chr2_2:10921337-10921356 None:intergenic 35.0%
AAATGTCAGTTTGTGTTCAG+AGG + chr2_2:10921414-10921433 None:intergenic 35.0%
! CTGAACACAAACTGACATTT+TGG - chr2_2:10921414-10921433 Msa0237650:intron 35.0%
!!! TTTTGGAGCTAATATGCTGT+TGG - chr2_2:10921431-10921450 Msa0237650:intron 35.0%
!! ATGATAGCCAGAGGTTTTAA+AGG - chr2_2:10921521-10921540 Msa0237650:intron 35.0%
!!! TGATAGCCAGAGGTTTTAAA+GGG - chr2_2:10921522-10921541 Msa0237650:intron 35.0%
TTGAACTTGACAGTTGTCAT+AGG - chr2_2:10921614-10921633 Msa0237650:intron 35.0%
TATTATGCAGGTTCTTGACA+TGG - chr2_2:10921852-10921871 Msa0237650:intron 35.0%
TTGTCGTATTACACAATTCG+TGG - chr2_2:10922006-10922025 Msa0237650:CDS 35.0%
TGTCGTATTACACAATTCGT+GGG - chr2_2:10922007-10922026 Msa0237650:CDS 35.0%
CACTTGTGCTAGATCAAAAA+AGG + chr2_2:10922064-10922083 None:intergenic 35.0%
!!! CTTTTTTGATCTAGCACAAG+TGG - chr2_2:10922062-10922081 Msa0237650:CDS 35.0%
GAGAAATAAACCACACACTC+TGG - chr2_2:10916931-10916950 Msa0237650:three_prime_UTR 40.0%
!! TGGGTGTTGAATTTGATGGT+GGG + chr2_2:10916959-10916978 None:intergenic 40.0%
!! ATGGGTGTTGAATTTGATGG+TGG + chr2_2:10916960-10916979 None:intergenic 40.0%
!!! TAACCATGCCACTTTCCTTT+TGG - chr2_2:10916986-10917005 Msa0237650:three_prime_UTR 40.0%
AAACCAAAAGGAAAGTGGCA+TGG + chr2_2:10916992-10917011 None:intergenic 40.0%
!! AATTTTGGGAAAAGCAGTGG+TGG + chr2_2:10917032-10917051 None:intergenic 40.0%
!! TCGAATTTTGGGAAAAGCAG+TGG + chr2_2:10917035-10917054 None:intergenic 40.0%
!! GGCACTGGATAATCGAATTT+TGG + chr2_2:10917047-10917066 None:intergenic 40.0%
GGAATCCACTTAGACCAATT+TGG + chr2_2:10917152-10917171 None:intergenic 40.0%
GGAAGAAACAAACTGTCCAA+TGG + chr2_2:10917234-10917253 None:intergenic 40.0%
TAGAGTGAAGAAACGTAGTG+GGG + chr2_2:10917256-10917275 None:intergenic 40.0%
!! ATTCTAGCTTGGGCATTGTA+TGG - chr2_2:10917541-10917560 Msa0237650:intron 40.0%
TATCTGGTGTTTGACACATG+TGG - chr2_2:10917691-10917710 Msa0237650:CDS 40.0%
AGCTATCACTCAAACAGTCA+TGG + chr2_2:10918034-10918053 None:intergenic 40.0%
GAGTGATAGCTAAGTTGTTG+TGG - chr2_2:10918043-10918062 Msa0237650:intron 40.0%
TGTTAAAGGTGAAGGGCTTA+AGG - chr2_2:10918071-10918090 Msa0237650:intron 40.0%
!!! ACAGGTATGGCTTTTAGTTC+TGG - chr2_2:10918252-10918271 Msa0237650:intron 40.0%
GGGTTCTACCAAGAAATACT+TGG - chr2_2:10918347-10918366 Msa0237650:intron 40.0%
CTCACCTTCCAAGTATTTCT+TGG + chr2_2:10918358-10918377 None:intergenic 40.0%
!! GGGTCGTGTTTATTTTCTGT+CGG - chr2_2:10918660-10918679 Msa0237650:intron 40.0%
TATAGGAAGATTTGGAAGCC+CGG + chr2_2:10918767-10918786 None:intergenic 40.0%
TAGGTCCATTAACCTTTACG+AGG - chr2_2:10918821-10918840 Msa0237650:intron 40.0%
CCTTTCCTCGTAAAGGTTAA+TGG + chr2_2:10918829-10918848 None:intergenic 40.0%
CCATTAACCTTTACGAGGAA+AGG - chr2_2:10918826-10918845 Msa0237650:intron 40.0%
ACGAGGAAAGGATTATCTGT+AGG - chr2_2:10918838-10918857 Msa0237650:intron 40.0%
ATGCAGATGCTAGTTGTTCA+GGG + chr2_2:10919042-10919061 None:intergenic 40.0%
AATGCAGATGCTAGTTGTTC+AGG + chr2_2:10919043-10919062 None:intergenic 40.0%
!! ATGCTTCCTCTGAGATACAT+AGG - chr2_2:10919073-10919092 Msa0237650:intron 40.0%
TTAGATTGGAGTGTGTCTAG+AGG + chr2_2:10919300-10919319 None:intergenic 40.0%
! ATCCGATTCGCAGGTAAAAT+GGG + chr2_2:10919340-10919359 None:intergenic 40.0%
!!! GTTTTGGAGAATTGGAGAAG+AGG + chr2_2:10919432-10919451 None:intergenic 40.0%
! CAGAGACATTGATGCAGTTT+TGG + chr2_2:10919448-10919467 None:intergenic 40.0%
GATTTGAAGACAGGTTCACA+CGG + chr2_2:10919577-10919596 None:intergenic 40.0%
! AGGATGTTCGATTTGAAGAC+AGG + chr2_2:10919586-10919605 None:intergenic 40.0%
GTCTTCAAATCGAACATCCT+TGG - chr2_2:10919586-10919605 Msa0237650:intron 40.0%
ATCACTATGTGAATCGGAAG+TGG + chr2_2:10919650-10919669 None:intergenic 40.0%
! AAGAGCATGTGAATCGGAAT+TGG + chr2_2:10919717-10919736 None:intergenic 40.0%
! TAGTCGAAGAGCATGTGAAT+CGG + chr2_2:10919723-10919742 None:intergenic 40.0%
TCACATGCTCTTCGACTAAT+CGG - chr2_2:10919725-10919744 Msa0237650:intron 40.0%
! CTCTTTGTAACTTGCACATC+CGG - chr2_2:10920053-10920072 Msa0237650:intron 40.0%
! ATCCGGTTTGCAGGTAAAAT+GGG - chr2_2:10920070-10920089 Msa0237650:intron 40.0%
!! TGTGTCTAAAGGAGTGTTAG+AGG - chr2_2:10920123-10920142 Msa0237650:CDS 40.0%
!! GTGTCTAAAGGAGTGTTAGA+GGG - chr2_2:10920124-10920143 Msa0237650:CDS 40.0%
ATGAAGAATCCTATGGTCAG+AGG + chr2_2:10920155-10920174 None:intergenic 40.0%
GGACCTGCAACAAAATAATC+AGG + chr2_2:10920328-10920347 None:intergenic 40.0%
CAATTCCCAATGCAATGTTC+CGG + chr2_2:10920349-10920368 None:intergenic 40.0%
ATTGGGAATTGTGTCTCGTA+GGG - chr2_2:10920358-10920377 Msa0237650:intron 40.0%
TTGTGTCTCGTAGGGTAAAT+TGG - chr2_2:10920366-10920385 Msa0237650:intron 40.0%
! TAGCTTTTCCACTTGTATCC+AGG - chr2_2:10920435-10920454 Msa0237650:CDS 40.0%
TTATGATGCCTGGATACAAG+TGG + chr2_2:10920446-10920465 None:intergenic 40.0%
TATCTGTGTTCCAACGAACA+AGG - chr2_2:10920495-10920514 Msa0237650:CDS 40.0%
CAACGAACAAGGTAAGTGAT+GGG - chr2_2:10920506-10920525 Msa0237650:CDS 40.0%
CCAGTCCAAACTCCAAATAT+TGG + chr2_2:10920691-10920710 None:intergenic 40.0%
! CCAATATTTGGAGTTTGGAC+TGG - chr2_2:10920688-10920707 Msa0237650:intron 40.0%
AGGTTTGTCGTGATGTTATG+TGG - chr2_2:10920942-10920961 Msa0237650:CDS 40.0%
TTGTCGTGATGTTATGTGGT+AGG - chr2_2:10920946-10920965 Msa0237650:CDS 40.0%
CAAATTTCCCAGGTTTGTCT+TGG - chr2_2:10921145-10921164 Msa0237650:intron 40.0%
CATACATCCAAGACAAACCT+GGG + chr2_2:10921155-10921174 None:intergenic 40.0%
TCATACATCCAAGACAAACC+TGG + chr2_2:10921156-10921175 None:intergenic 40.0%
TGTCACAGAAAGTGAGTGTA+TGG + chr2_2:10921387-10921406 None:intergenic 40.0%
ACACTCACTTTCTGTGACAT+AGG - chr2_2:10921388-10921407 Msa0237650:intron 40.0%
!!! GATAGCCAGAGGTTTTAAAG+GGG - chr2_2:10921523-10921542 Msa0237650:intron 40.0%
!! GTCAGAATCATCTTTTGGGA+TGG - chr2_2:10921574-10921593 Msa0237650:intron 40.0%
!! AGATACACCACTTTTAGCAC+TGG - chr2_2:10921677-10921696 Msa0237650:intron 40.0%
! AAGGTGTTCCTTCTTCTCTA+AGG - chr2_2:10921787-10921806 Msa0237650:intron 40.0%
AGGTGTTCCTTCTTCTCTAA+GGG - chr2_2:10921788-10921807 Msa0237650:intron 40.0%
CAAATAGCCCTTAGAGAAGA+AGG + chr2_2:10921798-10921817 None:intergenic 40.0%
TCTAAGGGCTATTTGTCGTT+TGG - chr2_2:10921803-10921822 Msa0237650:intron 40.0%
TGCTAGATCAAAAAAGGACG+TGG + chr2_2:10922058-10922077 None:intergenic 40.0%
GTGGCATGGTTACAGTTCAT+GGG + chr2_2:10916978-10916997 None:intergenic 45.0%
AGTGGCATGGTTACAGTTCA+TGG + chr2_2:10916979-10916998 None:intergenic 45.0%
GTGGTGGCAATGAAACCAAA+AGG + chr2_2:10917004-10917023 None:intergenic 45.0%
! TGGCTCTTTTGCTGCTGATA+AGG - chr2_2:10917175-10917194 Msa0237650:three_prime_UTR 45.0%
AGAGTGAAGAAACGTAGTGG+GGG + chr2_2:10917255-10917274 None:intergenic 45.0%
CCAGATAGACTCTCAAGTCT+CGG + chr2_2:10917678-10917697 None:intergenic 45.0%
!! CTGCTGCTGACTGTAGTTTT+TGG - chr2_2:10917872-10917891 Msa0237650:intron 45.0%
!! CTGCTGACTGTAGTTTTTGG+TGG - chr2_2:10917875-10917894 Msa0237650:intron 45.0%
TAGGATAGGATCATGTGAGC+TGG - chr2_2:10917941-10917960 Msa0237650:intron 45.0%
ACATTAGGACTGGGTTCAGA+TGG - chr2_2:10918697-10918716 Msa0237650:intron 45.0%
GTTCTTGACTGAACAAGTGC+AGG + chr2_2:10918727-10918746 None:intergenic 45.0%
TGCAGATGCTAGTTGTTCAG+GGG + chr2_2:10919041-10919060 None:intergenic 45.0%
AACTAGCATCTGCATTGCGA+TGG - chr2_2:10919047-10919066 Msa0237650:intron 45.0%
GATACGCCTATGTATCTCAG+AGG + chr2_2:10919082-10919101 None:intergenic 45.0%
GATTCGCAGGTAAAATGGGT+GGG + chr2_2:10919336-10919355 None:intergenic 45.0%
! CACCCATTTTACCTGCGAAT+CGG - chr2_2:10919335-10919354 Msa0237650:intron 45.0%
! CATCCGATTCGCAGGTAAAA+TGG + chr2_2:10919341-10919360 None:intergenic 45.0%
AGGTTCACACGGTAGATTTG+GGG + chr2_2:10919566-10919585 None:intergenic 45.0%
CAGGTTCACACGGTAGATTT+GGG + chr2_2:10919567-10919586 None:intergenic 45.0%
ACAGGTTCACACGGTAGATT+TGG + chr2_2:10919568-10919587 None:intergenic 45.0%
TGTGAATCGGAAGTGGTCTT+TGG + chr2_2:10919643-10919662 None:intergenic 45.0%
ATCAACATTCTCGTGAGCTG+CGG + chr2_2:10919890-10919909 None:intergenic 45.0%
AAGAGAGGTTGCGATTGAGA+CGG - chr2_2:10919946-10919965 Msa0237650:intron 45.0%
! CATCCGGTTTGCAGGTAAAA+TGG - chr2_2:10920069-10920088 Msa0237650:intron 45.0%
! GACCCATTTTACCTGCAAAC+CGG + chr2_2:10920075-10920094 None:intergenic 45.0%
TGGACTTGGAGTGTGTCTAA+AGG - chr2_2:10920112-10920131 Msa0237650:CDS 45.0%
CATTGGGAATTGTGTCTCGT+AGG - chr2_2:10920357-10920376 Msa0237650:intron 45.0%
CCATCACTTACCTTGTTCGT+TGG + chr2_2:10920508-10920527 None:intergenic 45.0%
CCAACGAACAAGGTAAGTGA+TGG - chr2_2:10920505-10920524 Msa0237650:CDS 45.0%
GCTCTTACCAGTGCTAAAAG+TGG + chr2_2:10921687-10921706 None:intergenic 45.0%
!! AAAAAAAAAAAAAAATCTTT+GGG - chr2_2:10921761-10921780 Msa0237650:intron 5.0%
TTTGGGAAAAGCAGTGGTGG+TGG + chr2_2:10917029-10917048 None:intergenic 50.0%
! TGGTCTAAGTGGATTCCCAC+TGG - chr2_2:10917155-10917174 Msa0237650:three_prime_UTR 50.0%
TCAGCAGCAAAAGAGCCAGT+GGG + chr2_2:10917173-10917192 None:intergenic 50.0%
ATCAGCAGCAAAAGAGCCAG+TGG + chr2_2:10917174-10917193 None:intergenic 50.0%
! AGTGCTACTGCTAGTCCCAT+TGG - chr2_2:10917215-10917234 Msa0237650:three_prime_UTR 50.0%
! CTAGCTTGGGCATTGTATGG+AGG - chr2_2:10917544-10917563 Msa0237650:intron 50.0%
CCGAGACTTGAGAGTCTATC+TGG - chr2_2:10917675-10917694 Msa0237650:CDS 50.0%
ACACGTGTCAGTGTCGTGTT+TGG - chr2_2:10917760-10917779 Msa0237650:intron 50.0%
!! TCAGTGTCGTGTTTGGTGTC+TGG - chr2_2:10917767-10917786 Msa0237650:intron 50.0%
!! CAGTGTCGTGTTTGGTGTCT+GGG - chr2_2:10917768-10917787 Msa0237650:intron 50.0%
! TTCTGGTTGTTCTACCGGCA+AGG - chr2_2:10918269-10918288 Msa0237650:intron 50.0%
AGTCAAAACTGCTTGGCCAC+TGG - chr2_2:10918548-10918567 Msa0237650:intron 50.0%
TGCTAGTTGTTCAGGGGTTG+TGG + chr2_2:10919035-10919054 None:intergenic 50.0%
CGATTCGCAGGTAAAATGGG+TGG + chr2_2:10919337-10919356 None:intergenic 50.0%
! TACTTGCACATCCGATTCGC+AGG + chr2_2:10919349-10919368 None:intergenic 50.0%
GGTTCACACGGTAGATTTGG+GGG + chr2_2:10919565-10919584 None:intergenic 50.0%
AGAGCACATGCTAGAGACTG+CGG - chr2_2:10919921-10919940 Msa0237650:intron 50.0%
GTCTCAATCGCAACCTCTCT+TGG + chr2_2:10919947-10919966 None:intergenic 50.0%
TCATCTCAACCTCCCCTTGA+TGG + chr2_2:10919981-10920000 None:intergenic 50.0%
! AACTTGCACATCCGGTTTGC+AGG - chr2_2:10920061-10920080 Msa0237650:intron 50.0%
CAGGTCCGGAACATTGCATT+GGG - chr2_2:10920341-10920360 Msa0237650:intron 50.0%
! CCTGGGAAATTTGCTCTGCA+TGG + chr2_2:10921138-10921157 None:intergenic 50.0%
CCATGCAGAGCAAATTTCCC+AGG - chr2_2:10921135-10921154 Msa0237650:intron 50.0%
!! GACGTCCCCTTTAAAACCTC+TGG + chr2_2:10921531-10921550 None:intergenic 50.0%
! ATGGTGGGAACCAGAGTGTG+TGG + chr2_2:10916944-10916963 None:intergenic 55.0%
!! AAAAGCAGTGGTGGTGGTGG+TGG + chr2_2:10917023-10917042 None:intergenic 55.0%
!! GTCGTGTTTGGTGTCTGGGT+CGG - chr2_2:10917772-10917791 Msa0237650:intron 55.0%
GTTCAGGGGTTGTGGTTGTG+AGG + chr2_2:10919027-10919046 None:intergenic 55.0%
TGTCTCCATCGCTCCATCGA+CGG + chr2_2:10919796-10919815 None:intergenic 55.0%
GATGGAGCGATGGAGACAAC+AGG - chr2_2:10919798-10919817 Msa0237650:intron 55.0%
GAGGTTGCGATTGAGACGGT+CGG - chr2_2:10919950-10919969 Msa0237650:intron 55.0%
AGGGTGTGACCTCTGACCAT+AGG - chr2_2:10920143-10920162 Msa0237650:CDS 55.0%
GCAGGTCCGGAACATTGCAT+TGG - chr2_2:10920340-10920359 Msa0237650:intron 55.0%
CTCTGGCTATCATAGCCTGC+AGG + chr2_2:10921514-10921533 None:intergenic 55.0%
CTGCAGGCTATGATAGCCAG+AGG - chr2_2:10921512-10921531 Msa0237650:intron 55.0%
!! GGGAAAAGCAGTGGTGGTGG+TGG + chr2_2:10917026-10917045 None:intergenic 60.0%
ACTCCACCACCTGCAGTGAC+CGG - chr2_2:10918745-10918764 Msa0237650:intron 60.0%
TTTGGAAGCCCGGTCACTGC+AGG + chr2_2:10918757-10918776 None:intergenic 60.0%
ACAAGCCGTCGATGGAGCGA+TGG - chr2_2:10919788-10919807 Msa0237650:intron 60.0%
CTAGAGACTGCGGCCAAGAG+AGG - chr2_2:10919931-10919950 Msa0237650:intron 60.0%
ACGGTCGGCAGCACCATCAA+GGG - chr2_2:10919965-10919984 Msa0237650:intron 60.0%
!! AGCAGTGGTGGTGGTGGTGG+TGG + chr2_2:10917020-10917039 None:intergenic 65.0%
CTCCACCACCTGCAGTGACC+GGG - chr2_2:10918746-10918765 Msa0237650:intron 65.0%
TCAGCGCGACAAGCCGTCGA+TGG - chr2_2:10919780-10919799 Msa0237650:intron 65.0%
GACGGTCGGCAGCACCATCA+AGG - chr2_2:10919964-10919983 Msa0237650:intron 65.0%
CGGTCGGCAGCACCATCAAG+GGG - chr2_2:10919966-10919985 Msa0237650:intron 65.0%
TCGGCAGCACCATCAAGGGG+AGG - chr2_2:10919969-10919988 Msa0237650:intron 65.0%
AGCCCGGTCACTGCAGGTGG+TGG + chr2_2:10918751-10918770 None:intergenic 70.0%
GGAAGCCCGGTCACTGCAGG+TGG + chr2_2:10918754-10918773 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 10916924 10922348 10916924 ID=Msa0237650;Name=Msa0237650
chr2_2 mRNA 10916924 10922348 10916924 ID=Msa0237650-mRNA-1;Parent=Msa0237650;Name=Msa0237650-mRNA-1;_AED=0.03;_eAED=0.03;_QI=54|1|1|1|0.85|0.87|8|515|376
chr2_2 exon 10916924 10917410 10916924 ID=Msa0237650-mRNA-1:exon:4768;Parent=Msa0237650-mRNA-1
chr2_2 exon 10917574 10917754 10917574 ID=Msa0237650-mRNA-1:exon:4767;Parent=Msa0237650-mRNA-1
chr2_2 exon 10918116 10918180 10918116 ID=Msa0237650-mRNA-1:exon:4766;Parent=Msa0237650-mRNA-1
chr2_2 exon 10918853 10918928 10918853 ID=Msa0237650-mRNA-1:exon:4765;Parent=Msa0237650-mRNA-1
chr2_2 exon 10920107 10920271 10920107 ID=Msa0237650-mRNA-1:exon:4764;Parent=Msa0237650-mRNA-1
chr2_2 exon 10920384 10920620 10920384 ID=Msa0237650-mRNA-1:exon:4763;Parent=Msa0237650-mRNA-1
chr2_2 exon 10920900 10921016 10920900 ID=Msa0237650-mRNA-1:exon:4762;Parent=Msa0237650-mRNA-1
chr2_2 exon 10921977 10922348 10921977 ID=Msa0237650-mRNA-1:exon:4761;Parent=Msa0237650-mRNA-1
chr2_2 five_prime_UTR 10922295 10922348 10922295 ID=Msa0237650-mRNA-1:five_prime_utr;Parent=Msa0237650-mRNA-1
chr2_2 CDS 10921977 10922294 10921977 ID=Msa0237650-mRNA-1:cds;Parent=Msa0237650-mRNA-1
chr2_2 CDS 10920900 10921016 10920900 ID=Msa0237650-mRNA-1:cds;Parent=Msa0237650-mRNA-1
chr2_2 CDS 10920384 10920620 10920384 ID=Msa0237650-mRNA-1:cds;Parent=Msa0237650-mRNA-1
chr2_2 CDS 10920107 10920271 10920107 ID=Msa0237650-mRNA-1:cds;Parent=Msa0237650-mRNA-1
chr2_2 CDS 10918853 10918928 10918853 ID=Msa0237650-mRNA-1:cds;Parent=Msa0237650-mRNA-1
chr2_2 CDS 10918116 10918180 10918116 ID=Msa0237650-mRNA-1:cds;Parent=Msa0237650-mRNA-1
chr2_2 CDS 10917602 10917754 10917602 ID=Msa0237650-mRNA-1:cds;Parent=Msa0237650-mRNA-1
chr2_2 three_prime_UTR 10917574 10917601 10917574 ID=Msa0237650-mRNA-1:three_prime_utr;Parent=Msa0237650-mRNA-1
chr2_2 three_prime_UTR 10916924 10917410 10916924 ID=Msa0237650-mRNA-1:three_prime_utr;Parent=Msa0237650-mRNA-1
Gene Sequence

>Msa0237650

ATGAACTGTAACCATGCCACTTTCCTTTTGGTTTCATTGCCACCACCACCACCACCACTGCTTTTCCCAAAATTCGATTATCCAGTGCCAAAGAAAACTCTTTTAACACTAAACCTGAAGAGAAATCCAATTCTAAGAATTAAAGCTTCAAAAGATGATAATGGGCAATCACCAAATTGGTCTAAGTGGATTCCCACTGGCTCTTTTGCTGCTGATAAGGTTTTCAGATTGATTTCAAGTGCTACTGCTAGTCCCATTGGACAGTTTGTTTCTTCCCCCACTACGTTTCTTCACTCTATTGATCCACGAGTTAAATTGGTATGGCTTTTAGTTCTGGTTGTTCTACCGGCAAGGTCGCATATAATTATGCGATTTGGATTAGTAGCATACTTGACTTTGCTTTCAATTTGGGTTCTACCAAGAAATACTTGGAAGGATCAATTGGGTCGTGTTTATTTTCTGTCGGCATTGTTATTCATAACATTAGGACTGGGTTCAGATGGCGTGCCTGCACTTGTTCAGTCAAGAACTCCACCACCTGCAGTGACCGGGCTTCCAAATCTTCCTATATCTTTAACAGGTTATTCATATGTAATCTCAAAGTTAGGTCCATTAACCTTTACGAGGAAAGGATTATCTGTAGGAAGCACTGTTGCATGTTTGACTTTTACAGTATTTCAAAGTGCAAGTCTCTGCCTCACAACCACAACCCCTGAACAACTAGCATCTGCATTGCGATGGTTCATGCTTCCTCTGAGATACATAGGCGTATCTGTATCAGAAATCGTGCTTACCCTTTTACTGTCATTGAGATTTATCAGTCTAGTTTTTGATGAGGTCCGGAACATTGCATTGGGAATTGTGTCTCGTAGGGTAAATTGGAAACAACTGACTGTTATGGAGACAATTGATATTTTCTTTAACTACTTCCGTCGCATCTTCAAAAATATTTTCAGCCATGCAGAGCAAATTTCCCAGGCTATGATAGCCAGAGGTTTTAAAGGGGACGTCGAGAATCACAAAATTTATTTCTTGTCAGAATCATCTTTTGGGATGGCAGATATTGTATGTTTGTTGAACTTGACAGTTGTCATAGGAGCTTCTCTTCTGTCTGAGTACTACCTTGTCTAA

Protein sequence

>Msa0237650

MNCNHATFLLVSLPPPPPPLLFPKFDYPVPKKTLLTLNLKRNPILRIKASKDDNGQSPNWSKWIPTGSFAADKVFRLISSATASPIGQFVSSPTTFLHSIDPRVKLVWLLVLVVLPARSHIIMRFGLVAYLTLLSIWVLPRNTWKDQLGRVYFLSALLFITLGLGSDGVPALVQSRTPPPAVTGLPNLPISLTGYSYVISKLGPLTFTRKGLSVGSTVACLTFTVFQSASLCLTTTTPEQLASALRWFMLPLRYIGVSVSEIVLTLLLSLRFISLVFDEVRNIALGIVSRRVNWKQLTVMETIDIFFNYFRRIFKNIFSHAEQISQAMIARGFKGDVENHKIYFLSESSFGMADIVCLLNLTVVIGASLLSEYYLV*