Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0384910 | XP_013462189.1 | 96.259 | 294 | 9 | 1 | 1 | 292 | 1 | 294 | 0.0 | 587 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0384910 | sp|Q9FXH7|SRS7_ARATH | 43.305 | 351 | 123 | 17 | 1 | 286 | 1 | 340 | 6.98e-70 | 223 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0384910 | A0A072V2G0 | 96.259 | 294 | 9 | 1 | 1 | 292 | 1 | 294 | 0.0 | 587 |
Gene ID | Type | Classification |
---|---|---|
Msa0384910 | TF | SRS |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0006980 | Msa0384910 | 0.820763 | 5.775276e-53 | -8.615850e-47 |
Msa0124130 | Msa0384910 | 0.804683 | 1.920732e-49 | -8.615850e-47 |
Msa0149140 | Msa0384910 | 0.816059 | 6.720455e-52 | -8.615850e-47 |
Msa0197100 | Msa0384910 | 0.801934 | 7.121475e-49 | -8.615850e-47 |
Msa0212150 | Msa0384910 | 0.827973 | 1.163616e-54 | -8.615850e-47 |
Msa0215640 | Msa0384910 | 0.833619 | 4.805401e-56 | -8.615850e-47 |
Msa0384910 | Msa0406000 | 0.817110 | 3.908150e-52 | -8.615850e-47 |
Msa0384910 | Msa0424350 | 0.815594 | 8.533773e-52 | -8.615850e-47 |
Msa0384910 | Msa0451400 | 0.817262 | 3.612092e-52 | -8.615850e-47 |
Msa0384910 | Msa0492190 | 0.800993 | 1.110182e-48 | -8.615850e-47 |
Msa0384910 | Msa0739580 | 0.861826 | 7.807546e-64 | -8.615850e-47 |
Msa0384910 | Msa0782360 | 0.831635 | 1.492392e-55 | -8.615850e-47 |
Msa0384910 | Msa0860280 | 0.826198 | 3.094215e-54 | -8.615850e-47 |
Msa0384910 | Msa1379970 | 0.809353 | 1.973639e-50 | -8.615850e-47 |
Msa0384910 | Msa1394890 | 0.824469 | 7.936575e-54 | -8.615850e-47 |
Msa0384910 | Msa1406780 | 0.856027 | 4.244727e-62 | -8.615850e-47 |
Msa0384910 | Msa1421550 | 0.806632 | 7.484830e-50 | -8.615850e-47 |
Msa0384910 | Msa1431850 | 0.859330 | 4.456401e-63 | -8.615850e-47 |
Msa0384910 | Msa1459530 | 0.807915 | 4.003509e-50 | -8.615850e-47 |
Msa0239030 | Msa0384910 | 0.803034 | 4.225225e-49 | -8.615850e-47 |
Msa0252770 | Msa0384910 | 0.832210 | 1.076359e-55 | -8.615850e-47 |
Msa0289920 | Msa0384910 | 0.812645 | 3.820532e-51 | -8.615850e-47 |
Msa0306120 | Msa0384910 | 0.804798 | 1.816657e-49 | -8.615850e-47 |
Msa0329620 | Msa0384910 | 0.834001 | 3.856463e-56 | -8.615850e-47 |
Msa0333700 | Msa0384910 | 0.808805 | 2.585238e-50 | -8.615850e-47 |
Msa0359250 | Msa0384910 | 0.814213 | 1.727416e-51 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0384910 | MtrunA17_Chr3g0142171 | 96.259 | 294 | 9 | 1 | 1 | 292 | 1 | 294 | 0.0 | 587 |
Msa0384910 | MtrunA17_Chr1g0155791 | 54.369 | 309 | 91 | 14 | 25 | 288 | 32 | 335 | 2.13e-71 | 223 |
Msa0384910 | MtrunA17_Chr8g0372461 | 52.459 | 244 | 88 | 9 | 57 | 286 | 97 | 326 | 1.97e-62 | 200 |
Msa0384910 | MtrunA17_Chr5g0404781 | 42.683 | 328 | 143 | 15 | 1 | 289 | 1 | 322 | 3.56e-59 | 191 |
Msa0384910 | MtrunA17_Chr4g0035591 | 45.570 | 158 | 63 | 5 | 81 | 236 | 17 | 153 | 1.11e-37 | 132 |
Msa0384910 | MtrunA17_Chr5g0441921 | 46.541 | 159 | 67 | 5 | 84 | 227 | 124 | 279 | 5.84e-31 | 118 |
Msa0384910 | MtrunA17_Chr3g0082511 | 41.615 | 161 | 66 | 8 | 84 | 224 | 134 | 286 | 1.93e-27 | 108 |
Msa0384910 | MtrunA17_Chr8g0353111 | 35.749 | 207 | 101 | 7 | 84 | 265 | 124 | 323 | 6.64e-27 | 107 |
Msa0384910 | MtrunA17_Chr2g0281741 | 63.158 | 38 | 14 | 0 | 81 | 118 | 147 | 184 | 1.06e-12 | 65.5 |
Msa0384910 | MtrunA17_Chr0c01g0489181 | 57.895 | 38 | 16 | 0 | 81 | 118 | 64 | 101 | 2.78e-11 | 59.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0384910 | AT1G19790.2 | 43.305 | 351 | 123 | 17 | 1 | 286 | 1 | 340 | 7.10e-71 | 223 |
Msa0384910 | AT1G19790.1 | 43.305 | 351 | 123 | 17 | 1 | 286 | 1 | 340 | 7.10e-71 | 223 |
Msa0384910 | AT1G75520.1 | 42.297 | 357 | 123 | 16 | 1 | 288 | 1 | 343 | 1.58e-63 | 204 |
Msa0384910 | AT5G66350.1 | 52.036 | 221 | 74 | 9 | 84 | 286 | 120 | 326 | 6.03e-56 | 184 |
Msa0384910 | AT3G51060.1 | 51.316 | 228 | 84 | 11 | 82 | 286 | 142 | 365 | 1.55e-54 | 181 |
Msa0384910 | AT5G66350.3 | 51.389 | 216 | 74 | 8 | 84 | 281 | 120 | 322 | 2.09e-54 | 179 |
Msa0384910 | AT5G66350.2 | 51.869 | 214 | 72 | 8 | 84 | 279 | 120 | 320 | 2.68e-54 | 179 |
Msa0384910 | AT2G18120.1 | 41.048 | 229 | 106 | 7 | 1 | 227 | 6 | 207 | 1.66e-44 | 151 |
Msa0384910 | AT4G36260.1 | 53.125 | 160 | 61 | 5 | 78 | 225 | 88 | 245 | 4.63e-42 | 147 |
Msa0384910 | AT2G18120.2 | 39.648 | 227 | 110 | 6 | 1 | 227 | 6 | 205 | 5.90e-42 | 144 |
Msa0384910 | AT2G21400.2 | 40.000 | 215 | 94 | 8 | 75 | 285 | 1 | 184 | 2.33e-39 | 136 |
Msa0384910 | AT2G21400.4 | 40.670 | 209 | 89 | 8 | 81 | 285 | 6 | 183 | 4.00e-39 | 136 |
Msa0384910 | AT2G21400.3 | 40.284 | 211 | 84 | 8 | 75 | 285 | 1 | 169 | 8.40e-38 | 132 |
Msa0384910 | AT2G21400.1 | 40.976 | 205 | 79 | 8 | 81 | 285 | 6 | 168 | 1.36e-37 | 131 |
Msa0384910 | AT5G12330.1 | 44.720 | 161 | 66 | 5 | 84 | 224 | 112 | 269 | 5.16e-30 | 115 |
Msa0384910 | AT5G12330.2 | 44.720 | 161 | 66 | 5 | 84 | 224 | 112 | 269 | 5.16e-30 | 115 |
Msa0384910 | AT5G12330.4 | 44.720 | 161 | 66 | 5 | 84 | 224 | 199 | 356 | 9.20e-30 | 116 |
Msa0384910 | AT5G33210.2 | 57.955 | 88 | 34 | 3 | 82 | 166 | 15 | 102 | 1.47e-25 | 98.2 |
Msa0384910 | AT5G33210.1 | 58.621 | 87 | 33 | 3 | 82 | 165 | 50 | 136 | 5.10e-25 | 99.0 |
Msa0384910 | AT3G54430.1 | 36.486 | 148 | 77 | 4 | 80 | 224 | 37 | 170 | 4.73e-22 | 91.3 |
Msa0384910 | AT5G12330.3 | 82.609 | 46 | 8 | 0 | 84 | 129 | 112 | 157 | 9.03e-21 | 89.0 |
Find 78 sgRNAs with CRISPR-Local
Find 204 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACACACCGTATTAATTAATT+AGG | 0.252373 | 3_1:+88329715 | None:intergenic |
GCACCTATTGAAGGTTCTTC+TGG | 0.278915 | 3_1:-88329889 | Msa0384910:CDS |
TATTAATTAATTAGGATGTT+GGG | 0.323138 | 3_1:+88329723 | None:intergenic |
GCAATACTGGTGTAAAGATT+TGG | 0.352201 | 3_1:+88329910 | None:intergenic |
AGCTCCGCTCAATGCTTTCA+TGG | 0.372783 | 3_1:-88329770 | Msa0384910:CDS |
GATGAGTGTGAAAGAAGATT+TGG | 0.383103 | 3_1:-88330943 | Msa0384910:CDS |
ACCTTCAATAGGTGCAATAC+TGG | 0.385502 | 3_1:+88329897 | None:intergenic |
TTGAACATTTACAATGCGTT+TGG | 0.402855 | 3_1:-88331003 | Msa0384910:CDS |
CCGTTTCGTCGTCGAGATCA+TGG | 0.410173 | 3_1:-88330736 | Msa0384910:CDS |
AGAGATGTTGTTGTCGTTCA+CGG | 0.410405 | 3_1:+88330767 | None:intergenic |
GTGGTAGGGATGGGTGGTTG+AGG | 0.413319 | 3_1:+88330658 | None:intergenic |
CGTTCACGGCGTTTAGCAGC+TGG | 0.414213 | 3_1:+88330781 | None:intergenic |
CCACCAGAGGTGAGTTCTCC+AGG | 0.416959 | 3_1:-88330057 | Msa0384910:CDS |
ACAACAAAGGGTTAGAGATA+TGG | 0.425274 | 3_1:-88331038 | Msa0384910:CDS |
TGCTACTTAGGGTTGGAGTT+GGG | 0.432629 | 3_1:-88330087 | Msa0384910:intron |
GTATTAATTAATTAGGATGT+TGG | 0.434180 | 3_1:+88329722 | None:intergenic |
ACCAGTATTGCACCTATTGA+AGG | 0.434447 | 3_1:-88329898 | Msa0384910:CDS |
TGGTAGGGATGGGTGGTTGA+GGG | 0.435264 | 3_1:+88330659 | None:intergenic |
GGGATGGGTGGTTGAGGGCA+AGG | 0.438435 | 3_1:+88330664 | None:intergenic |
AAACACATGTTAAGAGTACT+TGG | 0.440077 | 3_1:-88330807 | Msa0384910:CDS |
CTGCTACTTAGGGTTGGAGT+TGG | 0.452789 | 3_1:-88330088 | Msa0384910:intron |
ATTGAGCGGAGCTGAGTAAA+GGG | 0.455523 | 3_1:+88329780 | None:intergenic |
GTTCTCCAGGAGTAACCTTT+CGG | 0.458523 | 3_1:-88330044 | Msa0384910:CDS |
AAAGGAATTCTCTATGATCA+AGG | 0.458943 | 3_1:-88329937 | Msa0384910:CDS |
TGTTCAATGCGCGTATCAAA+CGG | 0.468547 | 3_1:-88329986 | Msa0384910:CDS |
TGGTTGAGGGCAAGGAAGAG+AGG | 0.470671 | 3_1:+88330672 | None:intergenic |
CTCAATGCTTTCATGGCAGC+TGG | 0.470851 | 3_1:-88329763 | Msa0384910:CDS |
TACGCGCATTGAACATGATC+TGG | 0.473149 | 3_1:+88329994 | None:intergenic |
CCACCAGAAGAACCTTCAAT+AGG | 0.475713 | 3_1:+88329886 | None:intergenic |
ATTTACAATGCGTTTGGAGC+GGG | 0.476042 | 3_1:-88330997 | Msa0384910:CDS |
ATTAATTAATTAGGATGTTG+GGG | 0.494474 | 3_1:+88329724 | None:intergenic |
CCATGATCTCGACGACGAAA+CGG | 0.500595 | 3_1:+88330736 | None:intergenic |
AATAATTATATACCTGTGGT+AGG | 0.506589 | 3_1:+88330643 | None:intergenic |
TGAGTACTGCAACAAATGGC+TGG | 0.507692 | 3_1:-88331156 | None:intergenic |
AGGAGATCTATAACAACAAA+GGG | 0.518436 | 3_1:-88331050 | Msa0384910:CDS |
ACACACCGAAAGGTTACTCC+TGG | 0.521457 | 3_1:+88330039 | None:intergenic |
CCTATTGAAGGTTCTTCTGG+TGG | 0.522897 | 3_1:-88329886 | Msa0384910:CDS |
TATCAAACGGCTGTGAACAT+AGG | 0.523500 | 3_1:-88329973 | Msa0384910:CDS |
CATTGAGCGGAGCTGAGTAA+AGG | 0.525999 | 3_1:+88329779 | None:intergenic |
TAGTGGAGGAATGAATTGTC+AGG | 0.528718 | 3_1:-88330908 | Msa0384910:CDS |
TTATATACCTGTGGTAGGGA+TGG | 0.531535 | 3_1:+88330648 | None:intergenic |
AAAGAAGATTTGGTATAATG+AGG | 0.534847 | 3_1:-88330933 | Msa0384910:CDS |
GAACTTGTTGTAAGAGTCGA+GGG | 0.537704 | 3_1:-88330840 | Msa0384910:CDS |
ATTGAAGGTTCTTCTGGTGG+AGG | 0.544276 | 3_1:-88329883 | Msa0384910:CDS |
ATACCTGTGGTAGGGATGGG+TGG | 0.544823 | 3_1:+88330652 | None:intergenic |
ACTCCTGGAGAACTCACCTC+TGG | 0.545749 | 3_1:+88330054 | None:intergenic |
CGACACACAGAAATTAATCA+AGG | 0.547183 | 3_1:-88330700 | Msa0384910:CDS |
CCTGGAGAACTCACCTCTGG+TGG | 0.547209 | 3_1:+88330057 | None:intergenic |
AGTAAAGGGAAGGGTCGAAT+GGG | 0.547906 | 3_1:+88329794 | None:intergenic |
GAGTAAAGGGAAGGGTCGAA+TGG | 0.551923 | 3_1:+88329793 | None:intergenic |
GTGTGTGAGAGTGAGTTCAT+TGG | 0.567712 | 3_1:-88330022 | Msa0384910:CDS |
TATATACCTGTGGTAGGGAT+GGG | 0.567730 | 3_1:+88330649 | None:intergenic |
CAAACGGCTGTGAACATAGG+AGG | 0.569957 | 3_1:-88329970 | Msa0384910:CDS |
ATAATTATATACCTGTGGTA+GGG | 0.570372 | 3_1:+88330644 | None:intergenic |
AGCGGAGCTGAGTAAAGGGA+AGG | 0.586546 | 3_1:+88329784 | None:intergenic |
CATTTACAATGCGTTTGGAG+CGG | 0.587822 | 3_1:-88330998 | Msa0384910:CDS |
TTTGGTATAATGAGGCGTAG+TGG | 0.591379 | 3_1:-88330925 | Msa0384910:CDS |
ATACTGGTGTAAAGATTTGG+AGG | 0.592879 | 3_1:+88329913 | None:intergenic |
CAACCACCCATCCCTACCAC+AGG | 0.593236 | 3_1:-88330655 | Msa0384910:intron |
GAGGAGATCTATAACAACAA+AGG | 0.594462 | 3_1:-88331051 | Msa0384910:CDS |
AGAATTATTGTTAAGAAACG+AGG | 0.601425 | 3_1:-88331070 | Msa0384910:CDS |
AGAACTTGTTGTAAGAGTCG+AGG | 0.607559 | 3_1:-88330841 | Msa0384910:CDS |
GTCATGAAATCAAGTTGTTG+AGG | 0.608390 | 3_1:+88329850 | None:intergenic |
AGGGTCGAATGGGATACCGC+TGG | 0.611002 | 3_1:+88329804 | None:intergenic |
TAAATGTTCAAGCTTTGTTG+TGG | 0.618391 | 3_1:+88331015 | None:intergenic |
CTGGAGAACTCACCTCTGGT+GGG | 0.629708 | 3_1:+88330058 | None:intergenic |
ACTCACTCTCACACACCGAA+AGG | 0.630422 | 3_1:+88330029 | None:intergenic |
GGTATAATGAGGCGTAGTGG+AGG | 0.645542 | 3_1:-88330922 | Msa0384910:CDS |
TTAATTAATTAGGATGTTGG+GGG | 0.645627 | 3_1:+88329725 | None:intergenic |
AACACATGTTAAGAGTACTT+GGG | 0.648062 | 3_1:-88330806 | Msa0384910:CDS |
AAACGGCTGTGAACATAGGA+GGG | 0.648226 | 3_1:-88329969 | Msa0384910:CDS |
GAGTACTGCAACAAATGGCT+GGG | 0.651398 | 3_1:-88331155 | None:intergenic |
GCGGAGCTGAGTAAAGGGAA+GGG | 0.669522 | 3_1:+88329785 | None:intergenic |
GCAACTACAGCTACAACCAG+CGG | 0.670400 | 3_1:-88329820 | Msa0384910:CDS |
GTTGGGACAATTCCCACCAG+AGG | 0.679398 | 3_1:-88330070 | Msa0384910:CDS |
GCTGCCATGAAAGCATTGAG+CGG | 0.695869 | 3_1:+88329766 | None:intergenic |
GTGAGAGTGAGTTCATTGGA+CGG | 0.712874 | 3_1:-88330018 | Msa0384910:CDS |
GGAATGAATTGTCAGGACTG+TGG | 0.748727 | 3_1:-88330901 | Msa0384910:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTTTTTATAGTTATAATGA+TGG | - | chr3_1:88330689-88330708 | Msa0384910:CDS | 10.0% |
!!! | TTTTTTTATAGTTATAATGA+TGG | - | chr3_1:88330689-88330708 | Msa0384910:CDS | 10.0% |
!! | TTACAATAATTATATACCTG+TGG | + | chr3_1:88330234-88330253 | None:intergenic | 20.0% |
!! | ACATACATACATACATATAT+AGG | - | chr3_1:88330287-88330306 | Msa0384910:intron | 20.0% |
!! | TTACAATAATTATATACCTG+TGG | + | chr3_1:88330234-88330253 | None:intergenic | 20.0% |
!! | ACATACATACATACATATAT+AGG | - | chr3_1:88330287-88330306 | Msa0384910:intron | 20.0% |
! | AGAATTATTGTTAAGAAACG+AGG | - | chr3_1:88329800-88329819 | Msa0384910:CDS | 25.0% |
!! | AAAGAAGATTTGGTATAATG+AGG | - | chr3_1:88329937-88329956 | Msa0384910:CDS | 25.0% |
! | ATAATTATATACCTGTGGTA+GGG | + | chr3_1:88330229-88330248 | None:intergenic | 25.0% |
! | AATAATTATATACCTGTGGT+AGG | + | chr3_1:88330230-88330249 | None:intergenic | 25.0% |
! | TTCATGATTGATGTATATAC+AGG | - | chr3_1:88330389-88330408 | Msa0384910:intron | 25.0% |
! | AAATCATCGTATACTAGTTA+AGG | + | chr3_1:88330508-88330527 | None:intergenic | 25.0% |
!! | GTATACGATGATTTTGAATA+TGG | - | chr3_1:88330514-88330533 | Msa0384910:intron | 25.0% |
! | AAAACAGTAACAAGTTATGA+TGG | + | chr3_1:88330569-88330588 | None:intergenic | 25.0% |
!! | GTTTTACTTAAAAACAGTGA+TGG | + | chr3_1:88330623-88330642 | None:intergenic | 25.0% |
!! | AATGATGGAAATACTAATAG+AGG | - | chr3_1:88330704-88330723 | Msa0384910:CDS | 25.0% |
! | AGAATTATTGTTAAGAAACG+AGG | - | chr3_1:88329800-88329819 | Msa0384910:CDS | 25.0% |
!! | AAAGAAGATTTGGTATAATG+AGG | - | chr3_1:88329937-88329956 | Msa0384910:CDS | 25.0% |
! | ATAATTATATACCTGTGGTA+GGG | + | chr3_1:88330229-88330248 | None:intergenic | 25.0% |
! | AATAATTATATACCTGTGGT+AGG | + | chr3_1:88330230-88330249 | None:intergenic | 25.0% |
! | TTCATGATTGATGTATATAC+AGG | - | chr3_1:88330389-88330408 | Msa0384910:intron | 25.0% |
! | AAATCATCGTATACTAGTTA+AGG | + | chr3_1:88330508-88330527 | None:intergenic | 25.0% |
!! | GTATACGATGATTTTGAATA+TGG | - | chr3_1:88330514-88330533 | Msa0384910:intron | 25.0% |
! | AAAACAGTAACAAGTTATGA+TGG | + | chr3_1:88330569-88330588 | None:intergenic | 25.0% |
!! | GTTTTACTTAAAAACAGTGA+TGG | + | chr3_1:88330623-88330642 | None:intergenic | 25.0% |
!! | AATGATGGAAATACTAATAG+AGG | - | chr3_1:88330704-88330723 | Msa0384910:CDS | 25.0% |
!! | GTTATTTTGTCTAGGTAGAA+AGG | - | chr3_1:88329737-88329756 | Msa0384910:CDS | 30.0% |
AGGAGATCTATAACAACAAA+GGG | - | chr3_1:88329820-88329839 | Msa0384910:CDS | 30.0% | |
!! | TAAATGTTCAAGCTTTGTTG+TGG | + | chr3_1:88329858-88329877 | None:intergenic | 30.0% |
TTGAACATTTACAATGCGTT+TGG | - | chr3_1:88329867-88329886 | Msa0384910:CDS | 30.0% | |
!! | AAACACATGTTAAGAGTACT+TGG | - | chr3_1:88330063-88330082 | Msa0384910:CDS | 30.0% |
!! | AACACATGTTAAGAGTACTT+GGG | - | chr3_1:88330064-88330083 | Msa0384910:CDS | 30.0% |
TATGTATGTATAGCTAGCTA+GGG | + | chr3_1:88330276-88330295 | None:intergenic | 30.0% | |
GTATAGCTGAAAATTCTTCA+TGG | + | chr3_1:88330416-88330435 | None:intergenic | 30.0% | |
!!! | CAATGCATTTTTTCATTAGC+AGG | + | chr3_1:88330452-88330471 | None:intergenic | 30.0% |
! | TTAAAAACAGTGATGGAGAA+TGG | + | chr3_1:88330616-88330635 | None:intergenic | 30.0% |
TGACGAACTCATCAAATTAT+TGG | - | chr3_1:88330643-88330662 | Msa0384910:intron | 30.0% | |
!! | AATTTTCTTGACTGCTACTT+AGG | - | chr3_1:88330771-88330790 | Msa0384910:CDS | 30.0% |
!! | ATTTTCTTGACTGCTACTTA+GGG | - | chr3_1:88330772-88330791 | Msa0384910:CDS | 30.0% |
AAAGGAATTCTCTATGATCA+AGG | - | chr3_1:88330933-88330952 | Msa0384910:CDS | 30.0% | |
!! | GTTATTTTGTCTAGGTAGAA+AGG | - | chr3_1:88329737-88329756 | Msa0384910:CDS | 30.0% |
AGGAGATCTATAACAACAAA+GGG | - | chr3_1:88329820-88329839 | Msa0384910:CDS | 30.0% | |
!! | TAAATGTTCAAGCTTTGTTG+TGG | + | chr3_1:88329858-88329877 | None:intergenic | 30.0% |
TTGAACATTTACAATGCGTT+TGG | - | chr3_1:88329867-88329886 | Msa0384910:CDS | 30.0% | |
!! | AAACACATGTTAAGAGTACT+TGG | - | chr3_1:88330063-88330082 | Msa0384910:CDS | 30.0% |
!! | AACACATGTTAAGAGTACTT+GGG | - | chr3_1:88330064-88330083 | Msa0384910:CDS | 30.0% |
TATGTATGTATAGCTAGCTA+GGG | + | chr3_1:88330276-88330295 | None:intergenic | 30.0% | |
GTATAGCTGAAAATTCTTCA+TGG | + | chr3_1:88330416-88330435 | None:intergenic | 30.0% | |
!!! | CAATGCATTTTTTCATTAGC+AGG | + | chr3_1:88330452-88330471 | None:intergenic | 30.0% |
! | TTAAAAACAGTGATGGAGAA+TGG | + | chr3_1:88330616-88330635 | None:intergenic | 30.0% |
TGACGAACTCATCAAATTAT+TGG | - | chr3_1:88330643-88330662 | Msa0384910:intron | 30.0% | |
!! | AATTTTCTTGACTGCTACTT+AGG | - | chr3_1:88330771-88330790 | Msa0384910:CDS | 30.0% |
!! | ATTTTCTTGACTGCTACTTA+GGG | - | chr3_1:88330772-88330791 | Msa0384910:CDS | 30.0% |
AAAGGAATTCTCTATGATCA+AGG | - | chr3_1:88330933-88330952 | Msa0384910:CDS | 30.0% | |
GAGGAGATCTATAACAACAA+AGG | - | chr3_1:88329819-88329838 | Msa0384910:CDS | 35.0% | |
ACAACAAAGGGTTAGAGATA+TGG | - | chr3_1:88329832-88329851 | Msa0384910:CDS | 35.0% | |
GATGAGTGTGAAAGAAGATT+TGG | - | chr3_1:88329927-88329946 | Msa0384910:CDS | 35.0% | |
CGACACACAGAAATTAATCA+AGG | - | chr3_1:88330170-88330189 | Msa0384910:intron | 35.0% | |
GTATGTATGTATAGCTAGCT+AGG | + | chr3_1:88330277-88330296 | None:intergenic | 35.0% | |
GTTAAGGTCTAGTCATATAG+AGG | + | chr3_1:88330492-88330511 | None:intergenic | 35.0% | |
AATGGAAAAGAAGATAGCGA+GGG | + | chr3_1:88330598-88330617 | None:intergenic | 35.0% | |
ATACTGGTGTAAAGATTTGG+AGG | + | chr3_1:88330960-88330979 | None:intergenic | 35.0% | |
GCAATACTGGTGTAAAGATT+TGG | + | chr3_1:88330963-88330982 | None:intergenic | 35.0% | |
! | GTCATGAAATCAAGTTGTTG+AGG | + | chr3_1:88331023-88331042 | None:intergenic | 35.0% |
GAGGAGATCTATAACAACAA+AGG | - | chr3_1:88329819-88329838 | Msa0384910:CDS | 35.0% | |
ACAACAAAGGGTTAGAGATA+TGG | - | chr3_1:88329832-88329851 | Msa0384910:CDS | 35.0% | |
GATGAGTGTGAAAGAAGATT+TGG | - | chr3_1:88329927-88329946 | Msa0384910:CDS | 35.0% | |
CGACACACAGAAATTAATCA+AGG | - | chr3_1:88330170-88330189 | Msa0384910:intron | 35.0% | |
GTATGTATGTATAGCTAGCT+AGG | + | chr3_1:88330277-88330296 | None:intergenic | 35.0% | |
GTTAAGGTCTAGTCATATAG+AGG | + | chr3_1:88330492-88330511 | None:intergenic | 35.0% | |
AATGGAAAAGAAGATAGCGA+GGG | + | chr3_1:88330598-88330617 | None:intergenic | 35.0% | |
ATACTGGTGTAAAGATTTGG+AGG | + | chr3_1:88330960-88330979 | None:intergenic | 35.0% | |
GCAATACTGGTGTAAAGATT+TGG | + | chr3_1:88330963-88330982 | None:intergenic | 35.0% | |
! | GTCATGAAATCAAGTTGTTG+AGG | + | chr3_1:88331023-88331042 | None:intergenic | 35.0% |
!! | ATGGCTGGGTTATTTTGTCT+AGG | - | chr3_1:88329729-88329748 | Msa0384910:CDS | 40.0% |
CATTTACAATGCGTTTGGAG+CGG | - | chr3_1:88329872-88329891 | Msa0384910:CDS | 40.0% | |
! | ATTTACAATGCGTTTGGAGC+GGG | - | chr3_1:88329873-88329892 | Msa0384910:CDS | 40.0% |
TTTGGTATAATGAGGCGTAG+TGG | - | chr3_1:88329945-88329964 | Msa0384910:CDS | 40.0% | |
TAGTGGAGGAATGAATTGTC+AGG | - | chr3_1:88329962-88329981 | Msa0384910:CDS | 40.0% | |
!! | AGAACTTGTTGTAAGAGTCG+AGG | - | chr3_1:88330029-88330048 | Msa0384910:CDS | 40.0% |
!! | GAACTTGTTGTAAGAGTCGA+GGG | - | chr3_1:88330030-88330049 | Msa0384910:CDS | 40.0% |
AGAGATGTTGTTGTCGTTCA+CGG | + | chr3_1:88330106-88330125 | None:intergenic | 40.0% | |
TATATACCTGTGGTAGGGAT+GGG | + | chr3_1:88330224-88330243 | None:intergenic | 40.0% | |
TTATATACCTGTGGTAGGGA+TGG | + | chr3_1:88330225-88330244 | None:intergenic | 40.0% | |
TTTGAATATGGAACCCCACT+TGG | - | chr3_1:88330526-88330545 | Msa0384910:intron | 40.0% | |
!! | CAAGTTATGATGGATAACCG+TGG | + | chr3_1:88330559-88330578 | None:intergenic | 40.0% |
GAATGGAAAAGAAGATAGCG+AGG | + | chr3_1:88330599-88330618 | None:intergenic | 40.0% | |
TGTTCAATGCGCGTATCAAA+CGG | - | chr3_1:88330884-88330903 | Msa0384910:CDS | 40.0% | |
TATCAAACGGCTGTGAACAT+AGG | - | chr3_1:88330897-88330916 | Msa0384910:CDS | 40.0% | |
!! | ATAGGAGGGCATGTTTTCAA+AGG | - | chr3_1:88330915-88330934 | Msa0384910:CDS | 40.0% |
ACCAGTATTGCACCTATTGA+AGG | - | chr3_1:88330972-88330991 | Msa0384910:CDS | 40.0% | |
ACCTTCAATAGGTGCAATAC+TGG | + | chr3_1:88330976-88330995 | None:intergenic | 40.0% | |
!! | ATGGCTGGGTTATTTTGTCT+AGG | - | chr3_1:88329729-88329748 | Msa0384910:CDS | 40.0% |
CATTTACAATGCGTTTGGAG+CGG | - | chr3_1:88329872-88329891 | Msa0384910:CDS | 40.0% | |
! | ATTTACAATGCGTTTGGAGC+GGG | - | chr3_1:88329873-88329892 | Msa0384910:CDS | 40.0% |
TTTGGTATAATGAGGCGTAG+TGG | - | chr3_1:88329945-88329964 | Msa0384910:CDS | 40.0% | |
TAGTGGAGGAATGAATTGTC+AGG | - | chr3_1:88329962-88329981 | Msa0384910:CDS | 40.0% | |
!! | AGAACTTGTTGTAAGAGTCG+AGG | - | chr3_1:88330029-88330048 | Msa0384910:CDS | 40.0% |
!! | GAACTTGTTGTAAGAGTCGA+GGG | - | chr3_1:88330030-88330049 | Msa0384910:CDS | 40.0% |
AGAGATGTTGTTGTCGTTCA+CGG | + | chr3_1:88330106-88330125 | None:intergenic | 40.0% | |
TATATACCTGTGGTAGGGAT+GGG | + | chr3_1:88330224-88330243 | None:intergenic | 40.0% | |
TTATATACCTGTGGTAGGGA+TGG | + | chr3_1:88330225-88330244 | None:intergenic | 40.0% | |
TTTGAATATGGAACCCCACT+TGG | - | chr3_1:88330526-88330545 | Msa0384910:intron | 40.0% | |
!! | CAAGTTATGATGGATAACCG+TGG | + | chr3_1:88330559-88330578 | None:intergenic | 40.0% |
GAATGGAAAAGAAGATAGCG+AGG | + | chr3_1:88330599-88330618 | None:intergenic | 40.0% | |
TGTTCAATGCGCGTATCAAA+CGG | - | chr3_1:88330884-88330903 | Msa0384910:CDS | 40.0% | |
TATCAAACGGCTGTGAACAT+AGG | - | chr3_1:88330897-88330916 | Msa0384910:CDS | 40.0% | |
!! | ATAGGAGGGCATGTTTTCAA+AGG | - | chr3_1:88330915-88330934 | Msa0384910:CDS | 40.0% |
ACCAGTATTGCACCTATTGA+AGG | - | chr3_1:88330972-88330991 | Msa0384910:CDS | 40.0% | |
ACCTTCAATAGGTGCAATAC+TGG | + | chr3_1:88330976-88330995 | None:intergenic | 40.0% | |
GGAATGAATTGTCAGGACTG+TGG | - | chr3_1:88329969-88329988 | Msa0384910:CDS | 45.0% | |
ATATGGAACCCCACTTGGAT+TGG | - | chr3_1:88330531-88330550 | Msa0384910:intron | 45.0% | |
! | TCTTGACTGCTACTTAGGGT+TGG | - | chr3_1:88330776-88330795 | Msa0384910:CDS | 45.0% |
! | TGCTACTTAGGGTTGGAGTT+GGG | - | chr3_1:88330783-88330802 | Msa0384910:CDS | 45.0% |
GTTCTCCAGGAGTAACCTTT+CGG | - | chr3_1:88330826-88330845 | Msa0384910:CDS | 45.0% | |
GTGTGTGAGAGTGAGTTCAT+TGG | - | chr3_1:88330848-88330867 | Msa0384910:CDS | 45.0% | |
GTGAGAGTGAGTTCATTGGA+CGG | - | chr3_1:88330852-88330871 | Msa0384910:CDS | 45.0% | |
TACGCGCATTGAACATGATC+TGG | + | chr3_1:88330879-88330898 | None:intergenic | 45.0% | |
AAACGGCTGTGAACATAGGA+GGG | - | chr3_1:88330901-88330920 | Msa0384910:CDS | 45.0% | |
GCACCTATTGAAGGTTCTTC+TGG | - | chr3_1:88330981-88331000 | Msa0384910:CDS | 45.0% | |
CCACCAGAAGAACCTTCAAT+AGG | + | chr3_1:88330987-88331006 | None:intergenic | 45.0% | |
CCTATTGAAGGTTCTTCTGG+TGG | - | chr3_1:88330984-88331003 | Msa0384910:CDS | 45.0% | |
ATTGAAGGTTCTTCTGGTGG+AGG | - | chr3_1:88330987-88331006 | Msa0384910:CDS | 45.0% | |
AGTAAAGGGAAGGGTCGAAT+GGG | + | chr3_1:88331079-88331098 | None:intergenic | 45.0% | |
ATTGAGCGGAGCTGAGTAAA+GGG | + | chr3_1:88331093-88331112 | None:intergenic | 45.0% | |
GGAATGAATTGTCAGGACTG+TGG | - | chr3_1:88329969-88329988 | Msa0384910:CDS | 45.0% | |
ATATGGAACCCCACTTGGAT+TGG | - | chr3_1:88330531-88330550 | Msa0384910:intron | 45.0% | |
! | TCTTGACTGCTACTTAGGGT+TGG | - | chr3_1:88330776-88330795 | Msa0384910:CDS | 45.0% |
! | TGCTACTTAGGGTTGGAGTT+GGG | - | chr3_1:88330783-88330802 | Msa0384910:CDS | 45.0% |
GTTCTCCAGGAGTAACCTTT+CGG | - | chr3_1:88330826-88330845 | Msa0384910:CDS | 45.0% | |
GTGTGTGAGAGTGAGTTCAT+TGG | - | chr3_1:88330848-88330867 | Msa0384910:CDS | 45.0% | |
GTGAGAGTGAGTTCATTGGA+CGG | - | chr3_1:88330852-88330871 | Msa0384910:CDS | 45.0% | |
TACGCGCATTGAACATGATC+TGG | + | chr3_1:88330879-88330898 | None:intergenic | 45.0% | |
AAACGGCTGTGAACATAGGA+GGG | - | chr3_1:88330901-88330920 | Msa0384910:CDS | 45.0% | |
GCACCTATTGAAGGTTCTTC+TGG | - | chr3_1:88330981-88331000 | Msa0384910:CDS | 45.0% | |
CCACCAGAAGAACCTTCAAT+AGG | + | chr3_1:88330987-88331006 | None:intergenic | 45.0% | |
CCTATTGAAGGTTCTTCTGG+TGG | - | chr3_1:88330984-88331003 | Msa0384910:CDS | 45.0% | |
ATTGAAGGTTCTTCTGGTGG+AGG | - | chr3_1:88330987-88331006 | Msa0384910:CDS | 45.0% | |
AGTAAAGGGAAGGGTCGAAT+GGG | + | chr3_1:88331079-88331098 | None:intergenic | 45.0% | |
ATTGAGCGGAGCTGAGTAAA+GGG | + | chr3_1:88331093-88331112 | None:intergenic | 45.0% | |
GGTATAATGAGGCGTAGTGG+AGG | - | chr3_1:88329948-88329967 | Msa0384910:CDS | 50.0% | |
CCATGATCTCGACGACGAAA+CGG | + | chr3_1:88330137-88330156 | None:intergenic | 50.0% | |
ACCGTGGATCCAATCCAAGT+GGG | + | chr3_1:88330543-88330562 | None:intergenic | 50.0% | |
AACCGTGGATCCAATCCAAG+TGG | + | chr3_1:88330544-88330563 | None:intergenic | 50.0% | |
! | CTGCTACTTAGGGTTGGAGT+TGG | - | chr3_1:88330782-88330801 | Msa0384910:CDS | 50.0% |
ACACACCGAAAGGTTACTCC+TGG | + | chr3_1:88330834-88330853 | None:intergenic | 50.0% | |
ACTCACTCTCACACACCGAA+AGG | + | chr3_1:88330844-88330863 | None:intergenic | 50.0% | |
CAAACGGCTGTGAACATAGG+AGG | - | chr3_1:88330900-88330919 | Msa0384910:CDS | 50.0% | |
GCAACTACAGCTACAACCAG+CGG | - | chr3_1:88331050-88331069 | Msa0384910:CDS | 50.0% | |
GAGTAAAGGGAAGGGTCGAA+TGG | + | chr3_1:88331080-88331099 | None:intergenic | 50.0% | |
CATTGAGCGGAGCTGAGTAA+AGG | + | chr3_1:88331094-88331113 | None:intergenic | 50.0% | |
AGCTCCGCTCAATGCTTTCA+TGG | - | chr3_1:88331100-88331119 | Msa0384910:CDS | 50.0% | |
!! | GCTGCCATGAAAGCATTGAG+CGG | + | chr3_1:88331107-88331126 | None:intergenic | 50.0% |
CTCAATGCTTTCATGGCAGC+TGG | - | chr3_1:88331107-88331126 | Msa0384910:CDS | 50.0% | |
GGTATAATGAGGCGTAGTGG+AGG | - | chr3_1:88329948-88329967 | Msa0384910:CDS | 50.0% | |
CCATGATCTCGACGACGAAA+CGG | + | chr3_1:88330137-88330156 | None:intergenic | 50.0% | |
ACCGTGGATCCAATCCAAGT+GGG | + | chr3_1:88330543-88330562 | None:intergenic | 50.0% | |
AACCGTGGATCCAATCCAAG+TGG | + | chr3_1:88330544-88330563 | None:intergenic | 50.0% | |
! | CTGCTACTTAGGGTTGGAGT+TGG | - | chr3_1:88330782-88330801 | Msa0384910:CDS | 50.0% |
ACACACCGAAAGGTTACTCC+TGG | + | chr3_1:88330834-88330853 | None:intergenic | 50.0% | |
ACTCACTCTCACACACCGAA+AGG | + | chr3_1:88330844-88330863 | None:intergenic | 50.0% | |
CAAACGGCTGTGAACATAGG+AGG | - | chr3_1:88330900-88330919 | Msa0384910:CDS | 50.0% | |
GCAACTACAGCTACAACCAG+CGG | - | chr3_1:88331050-88331069 | Msa0384910:CDS | 50.0% | |
GAGTAAAGGGAAGGGTCGAA+TGG | + | chr3_1:88331080-88331099 | None:intergenic | 50.0% | |
CATTGAGCGGAGCTGAGTAA+AGG | + | chr3_1:88331094-88331113 | None:intergenic | 50.0% | |
AGCTCCGCTCAATGCTTTCA+TGG | - | chr3_1:88331100-88331119 | Msa0384910:CDS | 50.0% | |
!! | GCTGCCATGAAAGCATTGAG+CGG | + | chr3_1:88331107-88331126 | None:intergenic | 50.0% |
CTCAATGCTTTCATGGCAGC+TGG | - | chr3_1:88331107-88331126 | Msa0384910:CDS | 50.0% | |
CCGTTTCGTCGTCGAGATCA+TGG | - | chr3_1:88330134-88330153 | Msa0384910:intron | 55.0% | |
TGGTTGAGGGCAAGGAAGAG+AGG | + | chr3_1:88330201-88330220 | None:intergenic | 55.0% | |
TGGTAGGGATGGGTGGTTGA+GGG | + | chr3_1:88330214-88330233 | None:intergenic | 55.0% | |
ATACCTGTGGTAGGGATGGG+TGG | + | chr3_1:88330221-88330240 | None:intergenic | 55.0% | |
CCGTGGATCCAATCCAAGTG+GGG | + | chr3_1:88330542-88330561 | None:intergenic | 55.0% | |
! | CCCCACTTGGATTGGATCCA+CGG | - | chr3_1:88330539-88330558 | Msa0384910:intron | 55.0% |
GTTGGGACAATTCCCACCAG+AGG | - | chr3_1:88330800-88330819 | Msa0384910:CDS | 55.0% | |
CTGGAGAACTCACCTCTGGT+GGG | + | chr3_1:88330815-88330834 | None:intergenic | 55.0% | |
ACTCCTGGAGAACTCACCTC+TGG | + | chr3_1:88330819-88330838 | None:intergenic | 55.0% | |
GCGGAGCTGAGTAAAGGGAA+GGG | + | chr3_1:88331088-88331107 | None:intergenic | 55.0% | |
AGCGGAGCTGAGTAAAGGGA+AGG | + | chr3_1:88331089-88331108 | None:intergenic | 55.0% | |
CCGTTTCGTCGTCGAGATCA+TGG | - | chr3_1:88330134-88330153 | Msa0384910:intron | 55.0% | |
TGGTTGAGGGCAAGGAAGAG+AGG | + | chr3_1:88330201-88330220 | None:intergenic | 55.0% | |
TGGTAGGGATGGGTGGTTGA+GGG | + | chr3_1:88330214-88330233 | None:intergenic | 55.0% | |
ATACCTGTGGTAGGGATGGG+TGG | + | chr3_1:88330221-88330240 | None:intergenic | 55.0% | |
CCGTGGATCCAATCCAAGTG+GGG | + | chr3_1:88330542-88330561 | None:intergenic | 55.0% | |
! | CCCCACTTGGATTGGATCCA+CGG | - | chr3_1:88330539-88330558 | Msa0384910:intron | 55.0% |
GTTGGGACAATTCCCACCAG+AGG | - | chr3_1:88330800-88330819 | Msa0384910:CDS | 55.0% | |
CTGGAGAACTCACCTCTGGT+GGG | + | chr3_1:88330815-88330834 | None:intergenic | 55.0% | |
ACTCCTGGAGAACTCACCTC+TGG | + | chr3_1:88330819-88330838 | None:intergenic | 55.0% | |
GCGGAGCTGAGTAAAGGGAA+GGG | + | chr3_1:88331088-88331107 | None:intergenic | 55.0% | |
AGCGGAGCTGAGTAAAGGGA+AGG | + | chr3_1:88331089-88331108 | None:intergenic | 55.0% | |
CGTTCACGGCGTTTAGCAGC+TGG | + | chr3_1:88330092-88330111 | None:intergenic | 60.0% | |
GTGGTAGGGATGGGTGGTTG+AGG | + | chr3_1:88330215-88330234 | None:intergenic | 60.0% | |
CAACCACCCATCCCTACCAC+AGG | - | chr3_1:88330215-88330234 | Msa0384910:intron | 60.0% | |
CCTGGAGAACTCACCTCTGG+TGG | + | chr3_1:88330816-88330835 | None:intergenic | 60.0% | |
CCACCAGAGGTGAGTTCTCC+AGG | - | chr3_1:88330813-88330832 | Msa0384910:CDS | 60.0% | |
AGGGTCGAATGGGATACCGC+TGG | + | chr3_1:88331069-88331088 | None:intergenic | 60.0% | |
CGTTCACGGCGTTTAGCAGC+TGG | + | chr3_1:88330092-88330111 | None:intergenic | 60.0% | |
GTGGTAGGGATGGGTGGTTG+AGG | + | chr3_1:88330215-88330234 | None:intergenic | 60.0% | |
CAACCACCCATCCCTACCAC+AGG | - | chr3_1:88330215-88330234 | Msa0384910:intron | 60.0% | |
CCTGGAGAACTCACCTCTGG+TGG | + | chr3_1:88330816-88330835 | None:intergenic | 60.0% | |
CCACCAGAGGTGAGTTCTCC+AGG | - | chr3_1:88330813-88330832 | Msa0384910:CDS | 60.0% | |
AGGGTCGAATGGGATACCGC+TGG | + | chr3_1:88331069-88331088 | None:intergenic | 60.0% | |
GGGATGGGTGGTTGAGGGCA+AGG | + | chr3_1:88330209-88330228 | None:intergenic | 65.0% | |
GGGATGGGTGGTTGAGGGCA+AGG | + | chr3_1:88330209-88330228 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3_1 | gene | 88329729 | 88331163 | 88329729 | ID=Msa0384910;Name=Msa0384910 |
chr3_1 | mRNA | 88329729 | 88331163 | 88329729 | ID=Msa0384910-mRNA-1;Parent=Msa0384910;Name=Msa0384910-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|1|0|1|1|1|2|0|292 |
chr3_1 | exon | 88330656 | 88331163 | 88330656 | ID=Msa0384910-mRNA-1:exon:23758;Parent=Msa0384910-mRNA-1 |
chr3_1 | exon | 88329729 | 88330099 | 88329729 | ID=Msa0384910-mRNA-1:exon:23757;Parent=Msa0384910-mRNA-1 |
chr3_1 | CDS | 88330656 | 88331163 | 88330656 | ID=Msa0384910-mRNA-1:cds;Parent=Msa0384910-mRNA-1 |
chr3_1 | CDS | 88329729 | 88330099 | 88329729 | ID=Msa0384910-mRNA-1:cds;Parent=Msa0384910-mRNA-1 |
Gene Sequence |
Protein sequence |