AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0384910


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0384910 MtrunA17_Chr3g0142171 96.259 294 9 1 1 292 1 294 0.0 587
Msa0384910 MtrunA17_Chr1g0155791 54.369 309 91 14 25 288 32 335 2.13e-71 223
Msa0384910 MtrunA17_Chr8g0372461 52.459 244 88 9 57 286 97 326 1.97e-62 200
Msa0384910 MtrunA17_Chr5g0404781 42.683 328 143 15 1 289 1 322 3.56e-59 191
Msa0384910 MtrunA17_Chr4g0035591 45.570 158 63 5 81 236 17 153 1.11e-37 132
Msa0384910 MtrunA17_Chr5g0441921 46.541 159 67 5 84 227 124 279 5.84e-31 118
Msa0384910 MtrunA17_Chr3g0082511 41.615 161 66 8 84 224 134 286 1.93e-27 108
Msa0384910 MtrunA17_Chr8g0353111 35.749 207 101 7 84 265 124 323 6.64e-27 107
Msa0384910 MtrunA17_Chr2g0281741 63.158 38 14 0 81 118 147 184 1.06e-12 65.5
Msa0384910 MtrunA17_Chr0c01g0489181 57.895 38 16 0 81 118 64 101 2.78e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0384910 AT1G19790.2 43.305 351 123 17 1 286 1 340 7.10e-71 223
Msa0384910 AT1G19790.1 43.305 351 123 17 1 286 1 340 7.10e-71 223
Msa0384910 AT1G75520.1 42.297 357 123 16 1 288 1 343 1.58e-63 204
Msa0384910 AT5G66350.1 52.036 221 74 9 84 286 120 326 6.03e-56 184
Msa0384910 AT3G51060.1 51.316 228 84 11 82 286 142 365 1.55e-54 181
Msa0384910 AT5G66350.3 51.389 216 74 8 84 281 120 322 2.09e-54 179
Msa0384910 AT5G66350.2 51.869 214 72 8 84 279 120 320 2.68e-54 179
Msa0384910 AT2G18120.1 41.048 229 106 7 1 227 6 207 1.66e-44 151
Msa0384910 AT4G36260.1 53.125 160 61 5 78 225 88 245 4.63e-42 147
Msa0384910 AT2G18120.2 39.648 227 110 6 1 227 6 205 5.90e-42 144
Msa0384910 AT2G21400.2 40.000 215 94 8 75 285 1 184 2.33e-39 136
Msa0384910 AT2G21400.4 40.670 209 89 8 81 285 6 183 4.00e-39 136
Msa0384910 AT2G21400.3 40.284 211 84 8 75 285 1 169 8.40e-38 132
Msa0384910 AT2G21400.1 40.976 205 79 8 81 285 6 168 1.36e-37 131
Msa0384910 AT5G12330.1 44.720 161 66 5 84 224 112 269 5.16e-30 115
Msa0384910 AT5G12330.2 44.720 161 66 5 84 224 112 269 5.16e-30 115
Msa0384910 AT5G12330.4 44.720 161 66 5 84 224 199 356 9.20e-30 116
Msa0384910 AT5G33210.2 57.955 88 34 3 82 166 15 102 1.47e-25 98.2
Msa0384910 AT5G33210.1 58.621 87 33 3 82 165 50 136 5.10e-25 99.0
Msa0384910 AT3G54430.1 36.486 148 77 4 80 224 37 170 4.73e-22 91.3
Msa0384910 AT5G12330.3 82.609 46 8 0 84 129 112 157 9.03e-21 89.0

Find 78 sgRNAs with CRISPR-Local

Find 204 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACACACCGTATTAATTAATT+AGG 0.252373 3_1:+88329715 None:intergenic
GCACCTATTGAAGGTTCTTC+TGG 0.278915 3_1:-88329889 Msa0384910:CDS
TATTAATTAATTAGGATGTT+GGG 0.323138 3_1:+88329723 None:intergenic
GCAATACTGGTGTAAAGATT+TGG 0.352201 3_1:+88329910 None:intergenic
AGCTCCGCTCAATGCTTTCA+TGG 0.372783 3_1:-88329770 Msa0384910:CDS
GATGAGTGTGAAAGAAGATT+TGG 0.383103 3_1:-88330943 Msa0384910:CDS
ACCTTCAATAGGTGCAATAC+TGG 0.385502 3_1:+88329897 None:intergenic
TTGAACATTTACAATGCGTT+TGG 0.402855 3_1:-88331003 Msa0384910:CDS
CCGTTTCGTCGTCGAGATCA+TGG 0.410173 3_1:-88330736 Msa0384910:CDS
AGAGATGTTGTTGTCGTTCA+CGG 0.410405 3_1:+88330767 None:intergenic
GTGGTAGGGATGGGTGGTTG+AGG 0.413319 3_1:+88330658 None:intergenic
CGTTCACGGCGTTTAGCAGC+TGG 0.414213 3_1:+88330781 None:intergenic
CCACCAGAGGTGAGTTCTCC+AGG 0.416959 3_1:-88330057 Msa0384910:CDS
ACAACAAAGGGTTAGAGATA+TGG 0.425274 3_1:-88331038 Msa0384910:CDS
TGCTACTTAGGGTTGGAGTT+GGG 0.432629 3_1:-88330087 Msa0384910:intron
GTATTAATTAATTAGGATGT+TGG 0.434180 3_1:+88329722 None:intergenic
ACCAGTATTGCACCTATTGA+AGG 0.434447 3_1:-88329898 Msa0384910:CDS
TGGTAGGGATGGGTGGTTGA+GGG 0.435264 3_1:+88330659 None:intergenic
GGGATGGGTGGTTGAGGGCA+AGG 0.438435 3_1:+88330664 None:intergenic
AAACACATGTTAAGAGTACT+TGG 0.440077 3_1:-88330807 Msa0384910:CDS
CTGCTACTTAGGGTTGGAGT+TGG 0.452789 3_1:-88330088 Msa0384910:intron
ATTGAGCGGAGCTGAGTAAA+GGG 0.455523 3_1:+88329780 None:intergenic
GTTCTCCAGGAGTAACCTTT+CGG 0.458523 3_1:-88330044 Msa0384910:CDS
AAAGGAATTCTCTATGATCA+AGG 0.458943 3_1:-88329937 Msa0384910:CDS
TGTTCAATGCGCGTATCAAA+CGG 0.468547 3_1:-88329986 Msa0384910:CDS
TGGTTGAGGGCAAGGAAGAG+AGG 0.470671 3_1:+88330672 None:intergenic
CTCAATGCTTTCATGGCAGC+TGG 0.470851 3_1:-88329763 Msa0384910:CDS
TACGCGCATTGAACATGATC+TGG 0.473149 3_1:+88329994 None:intergenic
CCACCAGAAGAACCTTCAAT+AGG 0.475713 3_1:+88329886 None:intergenic
ATTTACAATGCGTTTGGAGC+GGG 0.476042 3_1:-88330997 Msa0384910:CDS
ATTAATTAATTAGGATGTTG+GGG 0.494474 3_1:+88329724 None:intergenic
CCATGATCTCGACGACGAAA+CGG 0.500595 3_1:+88330736 None:intergenic
AATAATTATATACCTGTGGT+AGG 0.506589 3_1:+88330643 None:intergenic
TGAGTACTGCAACAAATGGC+TGG 0.507692 3_1:-88331156 None:intergenic
AGGAGATCTATAACAACAAA+GGG 0.518436 3_1:-88331050 Msa0384910:CDS
ACACACCGAAAGGTTACTCC+TGG 0.521457 3_1:+88330039 None:intergenic
CCTATTGAAGGTTCTTCTGG+TGG 0.522897 3_1:-88329886 Msa0384910:CDS
TATCAAACGGCTGTGAACAT+AGG 0.523500 3_1:-88329973 Msa0384910:CDS
CATTGAGCGGAGCTGAGTAA+AGG 0.525999 3_1:+88329779 None:intergenic
TAGTGGAGGAATGAATTGTC+AGG 0.528718 3_1:-88330908 Msa0384910:CDS
TTATATACCTGTGGTAGGGA+TGG 0.531535 3_1:+88330648 None:intergenic
AAAGAAGATTTGGTATAATG+AGG 0.534847 3_1:-88330933 Msa0384910:CDS
GAACTTGTTGTAAGAGTCGA+GGG 0.537704 3_1:-88330840 Msa0384910:CDS
ATTGAAGGTTCTTCTGGTGG+AGG 0.544276 3_1:-88329883 Msa0384910:CDS
ATACCTGTGGTAGGGATGGG+TGG 0.544823 3_1:+88330652 None:intergenic
ACTCCTGGAGAACTCACCTC+TGG 0.545749 3_1:+88330054 None:intergenic
CGACACACAGAAATTAATCA+AGG 0.547183 3_1:-88330700 Msa0384910:CDS
CCTGGAGAACTCACCTCTGG+TGG 0.547209 3_1:+88330057 None:intergenic
AGTAAAGGGAAGGGTCGAAT+GGG 0.547906 3_1:+88329794 None:intergenic
GAGTAAAGGGAAGGGTCGAA+TGG 0.551923 3_1:+88329793 None:intergenic
GTGTGTGAGAGTGAGTTCAT+TGG 0.567712 3_1:-88330022 Msa0384910:CDS
TATATACCTGTGGTAGGGAT+GGG 0.567730 3_1:+88330649 None:intergenic
CAAACGGCTGTGAACATAGG+AGG 0.569957 3_1:-88329970 Msa0384910:CDS
ATAATTATATACCTGTGGTA+GGG 0.570372 3_1:+88330644 None:intergenic
AGCGGAGCTGAGTAAAGGGA+AGG 0.586546 3_1:+88329784 None:intergenic
CATTTACAATGCGTTTGGAG+CGG 0.587822 3_1:-88330998 Msa0384910:CDS
TTTGGTATAATGAGGCGTAG+TGG 0.591379 3_1:-88330925 Msa0384910:CDS
ATACTGGTGTAAAGATTTGG+AGG 0.592879 3_1:+88329913 None:intergenic
CAACCACCCATCCCTACCAC+AGG 0.593236 3_1:-88330655 Msa0384910:intron
GAGGAGATCTATAACAACAA+AGG 0.594462 3_1:-88331051 Msa0384910:CDS
AGAATTATTGTTAAGAAACG+AGG 0.601425 3_1:-88331070 Msa0384910:CDS
AGAACTTGTTGTAAGAGTCG+AGG 0.607559 3_1:-88330841 Msa0384910:CDS
GTCATGAAATCAAGTTGTTG+AGG 0.608390 3_1:+88329850 None:intergenic
AGGGTCGAATGGGATACCGC+TGG 0.611002 3_1:+88329804 None:intergenic
TAAATGTTCAAGCTTTGTTG+TGG 0.618391 3_1:+88331015 None:intergenic
CTGGAGAACTCACCTCTGGT+GGG 0.629708 3_1:+88330058 None:intergenic
ACTCACTCTCACACACCGAA+AGG 0.630422 3_1:+88330029 None:intergenic
GGTATAATGAGGCGTAGTGG+AGG 0.645542 3_1:-88330922 Msa0384910:CDS
TTAATTAATTAGGATGTTGG+GGG 0.645627 3_1:+88329725 None:intergenic
AACACATGTTAAGAGTACTT+GGG 0.648062 3_1:-88330806 Msa0384910:CDS
AAACGGCTGTGAACATAGGA+GGG 0.648226 3_1:-88329969 Msa0384910:CDS
GAGTACTGCAACAAATGGCT+GGG 0.651398 3_1:-88331155 None:intergenic
GCGGAGCTGAGTAAAGGGAA+GGG 0.669522 3_1:+88329785 None:intergenic
GCAACTACAGCTACAACCAG+CGG 0.670400 3_1:-88329820 Msa0384910:CDS
GTTGGGACAATTCCCACCAG+AGG 0.679398 3_1:-88330070 Msa0384910:CDS
GCTGCCATGAAAGCATTGAG+CGG 0.695869 3_1:+88329766 None:intergenic
GTGAGAGTGAGTTCATTGGA+CGG 0.712874 3_1:-88330018 Msa0384910:CDS
GGAATGAATTGTCAGGACTG+TGG 0.748727 3_1:-88330901 Msa0384910:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTATAGTTATAATGA+TGG - chr3_1:88330689-88330708 Msa0384910:CDS 10.0%
!!! TTTTTTTATAGTTATAATGA+TGG - chr3_1:88330689-88330708 Msa0384910:CDS 10.0%
!! TTACAATAATTATATACCTG+TGG + chr3_1:88330234-88330253 None:intergenic 20.0%
!! ACATACATACATACATATAT+AGG - chr3_1:88330287-88330306 Msa0384910:intron 20.0%
!! TTACAATAATTATATACCTG+TGG + chr3_1:88330234-88330253 None:intergenic 20.0%
!! ACATACATACATACATATAT+AGG - chr3_1:88330287-88330306 Msa0384910:intron 20.0%
! AGAATTATTGTTAAGAAACG+AGG - chr3_1:88329800-88329819 Msa0384910:CDS 25.0%
!! AAAGAAGATTTGGTATAATG+AGG - chr3_1:88329937-88329956 Msa0384910:CDS 25.0%
! ATAATTATATACCTGTGGTA+GGG + chr3_1:88330229-88330248 None:intergenic 25.0%
! AATAATTATATACCTGTGGT+AGG + chr3_1:88330230-88330249 None:intergenic 25.0%
! TTCATGATTGATGTATATAC+AGG - chr3_1:88330389-88330408 Msa0384910:intron 25.0%
! AAATCATCGTATACTAGTTA+AGG + chr3_1:88330508-88330527 None:intergenic 25.0%
!! GTATACGATGATTTTGAATA+TGG - chr3_1:88330514-88330533 Msa0384910:intron 25.0%
! AAAACAGTAACAAGTTATGA+TGG + chr3_1:88330569-88330588 None:intergenic 25.0%
!! GTTTTACTTAAAAACAGTGA+TGG + chr3_1:88330623-88330642 None:intergenic 25.0%
!! AATGATGGAAATACTAATAG+AGG - chr3_1:88330704-88330723 Msa0384910:CDS 25.0%
! AGAATTATTGTTAAGAAACG+AGG - chr3_1:88329800-88329819 Msa0384910:CDS 25.0%
!! AAAGAAGATTTGGTATAATG+AGG - chr3_1:88329937-88329956 Msa0384910:CDS 25.0%
! ATAATTATATACCTGTGGTA+GGG + chr3_1:88330229-88330248 None:intergenic 25.0%
! AATAATTATATACCTGTGGT+AGG + chr3_1:88330230-88330249 None:intergenic 25.0%
! TTCATGATTGATGTATATAC+AGG - chr3_1:88330389-88330408 Msa0384910:intron 25.0%
! AAATCATCGTATACTAGTTA+AGG + chr3_1:88330508-88330527 None:intergenic 25.0%
!! GTATACGATGATTTTGAATA+TGG - chr3_1:88330514-88330533 Msa0384910:intron 25.0%
! AAAACAGTAACAAGTTATGA+TGG + chr3_1:88330569-88330588 None:intergenic 25.0%
!! GTTTTACTTAAAAACAGTGA+TGG + chr3_1:88330623-88330642 None:intergenic 25.0%
!! AATGATGGAAATACTAATAG+AGG - chr3_1:88330704-88330723 Msa0384910:CDS 25.0%
!! GTTATTTTGTCTAGGTAGAA+AGG - chr3_1:88329737-88329756 Msa0384910:CDS 30.0%
AGGAGATCTATAACAACAAA+GGG - chr3_1:88329820-88329839 Msa0384910:CDS 30.0%
!! TAAATGTTCAAGCTTTGTTG+TGG + chr3_1:88329858-88329877 None:intergenic 30.0%
TTGAACATTTACAATGCGTT+TGG - chr3_1:88329867-88329886 Msa0384910:CDS 30.0%
!! AAACACATGTTAAGAGTACT+TGG - chr3_1:88330063-88330082 Msa0384910:CDS 30.0%
!! AACACATGTTAAGAGTACTT+GGG - chr3_1:88330064-88330083 Msa0384910:CDS 30.0%
TATGTATGTATAGCTAGCTA+GGG + chr3_1:88330276-88330295 None:intergenic 30.0%
GTATAGCTGAAAATTCTTCA+TGG + chr3_1:88330416-88330435 None:intergenic 30.0%
!!! CAATGCATTTTTTCATTAGC+AGG + chr3_1:88330452-88330471 None:intergenic 30.0%
! TTAAAAACAGTGATGGAGAA+TGG + chr3_1:88330616-88330635 None:intergenic 30.0%
TGACGAACTCATCAAATTAT+TGG - chr3_1:88330643-88330662 Msa0384910:intron 30.0%
!! AATTTTCTTGACTGCTACTT+AGG - chr3_1:88330771-88330790 Msa0384910:CDS 30.0%
!! ATTTTCTTGACTGCTACTTA+GGG - chr3_1:88330772-88330791 Msa0384910:CDS 30.0%
AAAGGAATTCTCTATGATCA+AGG - chr3_1:88330933-88330952 Msa0384910:CDS 30.0%
!! GTTATTTTGTCTAGGTAGAA+AGG - chr3_1:88329737-88329756 Msa0384910:CDS 30.0%
AGGAGATCTATAACAACAAA+GGG - chr3_1:88329820-88329839 Msa0384910:CDS 30.0%
!! TAAATGTTCAAGCTTTGTTG+TGG + chr3_1:88329858-88329877 None:intergenic 30.0%
TTGAACATTTACAATGCGTT+TGG - chr3_1:88329867-88329886 Msa0384910:CDS 30.0%
!! AAACACATGTTAAGAGTACT+TGG - chr3_1:88330063-88330082 Msa0384910:CDS 30.0%
!! AACACATGTTAAGAGTACTT+GGG - chr3_1:88330064-88330083 Msa0384910:CDS 30.0%
TATGTATGTATAGCTAGCTA+GGG + chr3_1:88330276-88330295 None:intergenic 30.0%
GTATAGCTGAAAATTCTTCA+TGG + chr3_1:88330416-88330435 None:intergenic 30.0%
!!! CAATGCATTTTTTCATTAGC+AGG + chr3_1:88330452-88330471 None:intergenic 30.0%
! TTAAAAACAGTGATGGAGAA+TGG + chr3_1:88330616-88330635 None:intergenic 30.0%
TGACGAACTCATCAAATTAT+TGG - chr3_1:88330643-88330662 Msa0384910:intron 30.0%
!! AATTTTCTTGACTGCTACTT+AGG - chr3_1:88330771-88330790 Msa0384910:CDS 30.0%
!! ATTTTCTTGACTGCTACTTA+GGG - chr3_1:88330772-88330791 Msa0384910:CDS 30.0%
AAAGGAATTCTCTATGATCA+AGG - chr3_1:88330933-88330952 Msa0384910:CDS 30.0%
GAGGAGATCTATAACAACAA+AGG - chr3_1:88329819-88329838 Msa0384910:CDS 35.0%
ACAACAAAGGGTTAGAGATA+TGG - chr3_1:88329832-88329851 Msa0384910:CDS 35.0%
GATGAGTGTGAAAGAAGATT+TGG - chr3_1:88329927-88329946 Msa0384910:CDS 35.0%
CGACACACAGAAATTAATCA+AGG - chr3_1:88330170-88330189 Msa0384910:intron 35.0%
GTATGTATGTATAGCTAGCT+AGG + chr3_1:88330277-88330296 None:intergenic 35.0%
GTTAAGGTCTAGTCATATAG+AGG + chr3_1:88330492-88330511 None:intergenic 35.0%
AATGGAAAAGAAGATAGCGA+GGG + chr3_1:88330598-88330617 None:intergenic 35.0%
ATACTGGTGTAAAGATTTGG+AGG + chr3_1:88330960-88330979 None:intergenic 35.0%
GCAATACTGGTGTAAAGATT+TGG + chr3_1:88330963-88330982 None:intergenic 35.0%
! GTCATGAAATCAAGTTGTTG+AGG + chr3_1:88331023-88331042 None:intergenic 35.0%
GAGGAGATCTATAACAACAA+AGG - chr3_1:88329819-88329838 Msa0384910:CDS 35.0%
ACAACAAAGGGTTAGAGATA+TGG - chr3_1:88329832-88329851 Msa0384910:CDS 35.0%
GATGAGTGTGAAAGAAGATT+TGG - chr3_1:88329927-88329946 Msa0384910:CDS 35.0%
CGACACACAGAAATTAATCA+AGG - chr3_1:88330170-88330189 Msa0384910:intron 35.0%
GTATGTATGTATAGCTAGCT+AGG + chr3_1:88330277-88330296 None:intergenic 35.0%
GTTAAGGTCTAGTCATATAG+AGG + chr3_1:88330492-88330511 None:intergenic 35.0%
AATGGAAAAGAAGATAGCGA+GGG + chr3_1:88330598-88330617 None:intergenic 35.0%
ATACTGGTGTAAAGATTTGG+AGG + chr3_1:88330960-88330979 None:intergenic 35.0%
GCAATACTGGTGTAAAGATT+TGG + chr3_1:88330963-88330982 None:intergenic 35.0%
! GTCATGAAATCAAGTTGTTG+AGG + chr3_1:88331023-88331042 None:intergenic 35.0%
!! ATGGCTGGGTTATTTTGTCT+AGG - chr3_1:88329729-88329748 Msa0384910:CDS 40.0%
CATTTACAATGCGTTTGGAG+CGG - chr3_1:88329872-88329891 Msa0384910:CDS 40.0%
! ATTTACAATGCGTTTGGAGC+GGG - chr3_1:88329873-88329892 Msa0384910:CDS 40.0%
TTTGGTATAATGAGGCGTAG+TGG - chr3_1:88329945-88329964 Msa0384910:CDS 40.0%
TAGTGGAGGAATGAATTGTC+AGG - chr3_1:88329962-88329981 Msa0384910:CDS 40.0%
!! AGAACTTGTTGTAAGAGTCG+AGG - chr3_1:88330029-88330048 Msa0384910:CDS 40.0%
!! GAACTTGTTGTAAGAGTCGA+GGG - chr3_1:88330030-88330049 Msa0384910:CDS 40.0%
AGAGATGTTGTTGTCGTTCA+CGG + chr3_1:88330106-88330125 None:intergenic 40.0%
TATATACCTGTGGTAGGGAT+GGG + chr3_1:88330224-88330243 None:intergenic 40.0%
TTATATACCTGTGGTAGGGA+TGG + chr3_1:88330225-88330244 None:intergenic 40.0%
TTTGAATATGGAACCCCACT+TGG - chr3_1:88330526-88330545 Msa0384910:intron 40.0%
!! CAAGTTATGATGGATAACCG+TGG + chr3_1:88330559-88330578 None:intergenic 40.0%
GAATGGAAAAGAAGATAGCG+AGG + chr3_1:88330599-88330618 None:intergenic 40.0%
TGTTCAATGCGCGTATCAAA+CGG - chr3_1:88330884-88330903 Msa0384910:CDS 40.0%
TATCAAACGGCTGTGAACAT+AGG - chr3_1:88330897-88330916 Msa0384910:CDS 40.0%
!! ATAGGAGGGCATGTTTTCAA+AGG - chr3_1:88330915-88330934 Msa0384910:CDS 40.0%
ACCAGTATTGCACCTATTGA+AGG - chr3_1:88330972-88330991 Msa0384910:CDS 40.0%
ACCTTCAATAGGTGCAATAC+TGG + chr3_1:88330976-88330995 None:intergenic 40.0%
!! ATGGCTGGGTTATTTTGTCT+AGG - chr3_1:88329729-88329748 Msa0384910:CDS 40.0%
CATTTACAATGCGTTTGGAG+CGG - chr3_1:88329872-88329891 Msa0384910:CDS 40.0%
! ATTTACAATGCGTTTGGAGC+GGG - chr3_1:88329873-88329892 Msa0384910:CDS 40.0%
TTTGGTATAATGAGGCGTAG+TGG - chr3_1:88329945-88329964 Msa0384910:CDS 40.0%
TAGTGGAGGAATGAATTGTC+AGG - chr3_1:88329962-88329981 Msa0384910:CDS 40.0%
!! AGAACTTGTTGTAAGAGTCG+AGG - chr3_1:88330029-88330048 Msa0384910:CDS 40.0%
!! GAACTTGTTGTAAGAGTCGA+GGG - chr3_1:88330030-88330049 Msa0384910:CDS 40.0%
AGAGATGTTGTTGTCGTTCA+CGG + chr3_1:88330106-88330125 None:intergenic 40.0%
TATATACCTGTGGTAGGGAT+GGG + chr3_1:88330224-88330243 None:intergenic 40.0%
TTATATACCTGTGGTAGGGA+TGG + chr3_1:88330225-88330244 None:intergenic 40.0%
TTTGAATATGGAACCCCACT+TGG - chr3_1:88330526-88330545 Msa0384910:intron 40.0%
!! CAAGTTATGATGGATAACCG+TGG + chr3_1:88330559-88330578 None:intergenic 40.0%
GAATGGAAAAGAAGATAGCG+AGG + chr3_1:88330599-88330618 None:intergenic 40.0%
TGTTCAATGCGCGTATCAAA+CGG - chr3_1:88330884-88330903 Msa0384910:CDS 40.0%
TATCAAACGGCTGTGAACAT+AGG - chr3_1:88330897-88330916 Msa0384910:CDS 40.0%
!! ATAGGAGGGCATGTTTTCAA+AGG - chr3_1:88330915-88330934 Msa0384910:CDS 40.0%
ACCAGTATTGCACCTATTGA+AGG - chr3_1:88330972-88330991 Msa0384910:CDS 40.0%
ACCTTCAATAGGTGCAATAC+TGG + chr3_1:88330976-88330995 None:intergenic 40.0%
GGAATGAATTGTCAGGACTG+TGG - chr3_1:88329969-88329988 Msa0384910:CDS 45.0%
ATATGGAACCCCACTTGGAT+TGG - chr3_1:88330531-88330550 Msa0384910:intron 45.0%
! TCTTGACTGCTACTTAGGGT+TGG - chr3_1:88330776-88330795 Msa0384910:CDS 45.0%
! TGCTACTTAGGGTTGGAGTT+GGG - chr3_1:88330783-88330802 Msa0384910:CDS 45.0%
GTTCTCCAGGAGTAACCTTT+CGG - chr3_1:88330826-88330845 Msa0384910:CDS 45.0%
GTGTGTGAGAGTGAGTTCAT+TGG - chr3_1:88330848-88330867 Msa0384910:CDS 45.0%
GTGAGAGTGAGTTCATTGGA+CGG - chr3_1:88330852-88330871 Msa0384910:CDS 45.0%
TACGCGCATTGAACATGATC+TGG + chr3_1:88330879-88330898 None:intergenic 45.0%
AAACGGCTGTGAACATAGGA+GGG - chr3_1:88330901-88330920 Msa0384910:CDS 45.0%
GCACCTATTGAAGGTTCTTC+TGG - chr3_1:88330981-88331000 Msa0384910:CDS 45.0%
CCACCAGAAGAACCTTCAAT+AGG + chr3_1:88330987-88331006 None:intergenic 45.0%
CCTATTGAAGGTTCTTCTGG+TGG - chr3_1:88330984-88331003 Msa0384910:CDS 45.0%
ATTGAAGGTTCTTCTGGTGG+AGG - chr3_1:88330987-88331006 Msa0384910:CDS 45.0%
AGTAAAGGGAAGGGTCGAAT+GGG + chr3_1:88331079-88331098 None:intergenic 45.0%
ATTGAGCGGAGCTGAGTAAA+GGG + chr3_1:88331093-88331112 None:intergenic 45.0%
GGAATGAATTGTCAGGACTG+TGG - chr3_1:88329969-88329988 Msa0384910:CDS 45.0%
ATATGGAACCCCACTTGGAT+TGG - chr3_1:88330531-88330550 Msa0384910:intron 45.0%
! TCTTGACTGCTACTTAGGGT+TGG - chr3_1:88330776-88330795 Msa0384910:CDS 45.0%
! TGCTACTTAGGGTTGGAGTT+GGG - chr3_1:88330783-88330802 Msa0384910:CDS 45.0%
GTTCTCCAGGAGTAACCTTT+CGG - chr3_1:88330826-88330845 Msa0384910:CDS 45.0%
GTGTGTGAGAGTGAGTTCAT+TGG - chr3_1:88330848-88330867 Msa0384910:CDS 45.0%
GTGAGAGTGAGTTCATTGGA+CGG - chr3_1:88330852-88330871 Msa0384910:CDS 45.0%
TACGCGCATTGAACATGATC+TGG + chr3_1:88330879-88330898 None:intergenic 45.0%
AAACGGCTGTGAACATAGGA+GGG - chr3_1:88330901-88330920 Msa0384910:CDS 45.0%
GCACCTATTGAAGGTTCTTC+TGG - chr3_1:88330981-88331000 Msa0384910:CDS 45.0%
CCACCAGAAGAACCTTCAAT+AGG + chr3_1:88330987-88331006 None:intergenic 45.0%
CCTATTGAAGGTTCTTCTGG+TGG - chr3_1:88330984-88331003 Msa0384910:CDS 45.0%
ATTGAAGGTTCTTCTGGTGG+AGG - chr3_1:88330987-88331006 Msa0384910:CDS 45.0%
AGTAAAGGGAAGGGTCGAAT+GGG + chr3_1:88331079-88331098 None:intergenic 45.0%
ATTGAGCGGAGCTGAGTAAA+GGG + chr3_1:88331093-88331112 None:intergenic 45.0%
GGTATAATGAGGCGTAGTGG+AGG - chr3_1:88329948-88329967 Msa0384910:CDS 50.0%
CCATGATCTCGACGACGAAA+CGG + chr3_1:88330137-88330156 None:intergenic 50.0%
ACCGTGGATCCAATCCAAGT+GGG + chr3_1:88330543-88330562 None:intergenic 50.0%
AACCGTGGATCCAATCCAAG+TGG + chr3_1:88330544-88330563 None:intergenic 50.0%
! CTGCTACTTAGGGTTGGAGT+TGG - chr3_1:88330782-88330801 Msa0384910:CDS 50.0%
ACACACCGAAAGGTTACTCC+TGG + chr3_1:88330834-88330853 None:intergenic 50.0%
ACTCACTCTCACACACCGAA+AGG + chr3_1:88330844-88330863 None:intergenic 50.0%
CAAACGGCTGTGAACATAGG+AGG - chr3_1:88330900-88330919 Msa0384910:CDS 50.0%
GCAACTACAGCTACAACCAG+CGG - chr3_1:88331050-88331069 Msa0384910:CDS 50.0%
GAGTAAAGGGAAGGGTCGAA+TGG + chr3_1:88331080-88331099 None:intergenic 50.0%
CATTGAGCGGAGCTGAGTAA+AGG + chr3_1:88331094-88331113 None:intergenic 50.0%
AGCTCCGCTCAATGCTTTCA+TGG - chr3_1:88331100-88331119 Msa0384910:CDS 50.0%
!! GCTGCCATGAAAGCATTGAG+CGG + chr3_1:88331107-88331126 None:intergenic 50.0%
CTCAATGCTTTCATGGCAGC+TGG - chr3_1:88331107-88331126 Msa0384910:CDS 50.0%
GGTATAATGAGGCGTAGTGG+AGG - chr3_1:88329948-88329967 Msa0384910:CDS 50.0%
CCATGATCTCGACGACGAAA+CGG + chr3_1:88330137-88330156 None:intergenic 50.0%
ACCGTGGATCCAATCCAAGT+GGG + chr3_1:88330543-88330562 None:intergenic 50.0%
AACCGTGGATCCAATCCAAG+TGG + chr3_1:88330544-88330563 None:intergenic 50.0%
! CTGCTACTTAGGGTTGGAGT+TGG - chr3_1:88330782-88330801 Msa0384910:CDS 50.0%
ACACACCGAAAGGTTACTCC+TGG + chr3_1:88330834-88330853 None:intergenic 50.0%
ACTCACTCTCACACACCGAA+AGG + chr3_1:88330844-88330863 None:intergenic 50.0%
CAAACGGCTGTGAACATAGG+AGG - chr3_1:88330900-88330919 Msa0384910:CDS 50.0%
GCAACTACAGCTACAACCAG+CGG - chr3_1:88331050-88331069 Msa0384910:CDS 50.0%
GAGTAAAGGGAAGGGTCGAA+TGG + chr3_1:88331080-88331099 None:intergenic 50.0%
CATTGAGCGGAGCTGAGTAA+AGG + chr3_1:88331094-88331113 None:intergenic 50.0%
AGCTCCGCTCAATGCTTTCA+TGG - chr3_1:88331100-88331119 Msa0384910:CDS 50.0%
!! GCTGCCATGAAAGCATTGAG+CGG + chr3_1:88331107-88331126 None:intergenic 50.0%
CTCAATGCTTTCATGGCAGC+TGG - chr3_1:88331107-88331126 Msa0384910:CDS 50.0%
CCGTTTCGTCGTCGAGATCA+TGG - chr3_1:88330134-88330153 Msa0384910:intron 55.0%
TGGTTGAGGGCAAGGAAGAG+AGG + chr3_1:88330201-88330220 None:intergenic 55.0%
TGGTAGGGATGGGTGGTTGA+GGG + chr3_1:88330214-88330233 None:intergenic 55.0%
ATACCTGTGGTAGGGATGGG+TGG + chr3_1:88330221-88330240 None:intergenic 55.0%
CCGTGGATCCAATCCAAGTG+GGG + chr3_1:88330542-88330561 None:intergenic 55.0%
! CCCCACTTGGATTGGATCCA+CGG - chr3_1:88330539-88330558 Msa0384910:intron 55.0%
GTTGGGACAATTCCCACCAG+AGG - chr3_1:88330800-88330819 Msa0384910:CDS 55.0%
CTGGAGAACTCACCTCTGGT+GGG + chr3_1:88330815-88330834 None:intergenic 55.0%
ACTCCTGGAGAACTCACCTC+TGG + chr3_1:88330819-88330838 None:intergenic 55.0%
GCGGAGCTGAGTAAAGGGAA+GGG + chr3_1:88331088-88331107 None:intergenic 55.0%
AGCGGAGCTGAGTAAAGGGA+AGG + chr3_1:88331089-88331108 None:intergenic 55.0%
CCGTTTCGTCGTCGAGATCA+TGG - chr3_1:88330134-88330153 Msa0384910:intron 55.0%
TGGTTGAGGGCAAGGAAGAG+AGG + chr3_1:88330201-88330220 None:intergenic 55.0%
TGGTAGGGATGGGTGGTTGA+GGG + chr3_1:88330214-88330233 None:intergenic 55.0%
ATACCTGTGGTAGGGATGGG+TGG + chr3_1:88330221-88330240 None:intergenic 55.0%
CCGTGGATCCAATCCAAGTG+GGG + chr3_1:88330542-88330561 None:intergenic 55.0%
! CCCCACTTGGATTGGATCCA+CGG - chr3_1:88330539-88330558 Msa0384910:intron 55.0%
GTTGGGACAATTCCCACCAG+AGG - chr3_1:88330800-88330819 Msa0384910:CDS 55.0%
CTGGAGAACTCACCTCTGGT+GGG + chr3_1:88330815-88330834 None:intergenic 55.0%
ACTCCTGGAGAACTCACCTC+TGG + chr3_1:88330819-88330838 None:intergenic 55.0%
GCGGAGCTGAGTAAAGGGAA+GGG + chr3_1:88331088-88331107 None:intergenic 55.0%
AGCGGAGCTGAGTAAAGGGA+AGG + chr3_1:88331089-88331108 None:intergenic 55.0%
CGTTCACGGCGTTTAGCAGC+TGG + chr3_1:88330092-88330111 None:intergenic 60.0%
GTGGTAGGGATGGGTGGTTG+AGG + chr3_1:88330215-88330234 None:intergenic 60.0%
CAACCACCCATCCCTACCAC+AGG - chr3_1:88330215-88330234 Msa0384910:intron 60.0%
CCTGGAGAACTCACCTCTGG+TGG + chr3_1:88330816-88330835 None:intergenic 60.0%
CCACCAGAGGTGAGTTCTCC+AGG - chr3_1:88330813-88330832 Msa0384910:CDS 60.0%
AGGGTCGAATGGGATACCGC+TGG + chr3_1:88331069-88331088 None:intergenic 60.0%
CGTTCACGGCGTTTAGCAGC+TGG + chr3_1:88330092-88330111 None:intergenic 60.0%
GTGGTAGGGATGGGTGGTTG+AGG + chr3_1:88330215-88330234 None:intergenic 60.0%
CAACCACCCATCCCTACCAC+AGG - chr3_1:88330215-88330234 Msa0384910:intron 60.0%
CCTGGAGAACTCACCTCTGG+TGG + chr3_1:88330816-88330835 None:intergenic 60.0%
CCACCAGAGGTGAGTTCTCC+AGG - chr3_1:88330813-88330832 Msa0384910:CDS 60.0%
AGGGTCGAATGGGATACCGC+TGG + chr3_1:88331069-88331088 None:intergenic 60.0%
GGGATGGGTGGTTGAGGGCA+AGG + chr3_1:88330209-88330228 None:intergenic 65.0%
GGGATGGGTGGTTGAGGGCA+AGG + chr3_1:88330209-88330228 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 88329729 88331163 88329729 ID=Msa0384910;Name=Msa0384910
chr3_1 mRNA 88329729 88331163 88329729 ID=Msa0384910-mRNA-1;Parent=Msa0384910;Name=Msa0384910-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|1|0|1|1|1|2|0|292
chr3_1 exon 88330656 88331163 88330656 ID=Msa0384910-mRNA-1:exon:23758;Parent=Msa0384910-mRNA-1
chr3_1 exon 88329729 88330099 88329729 ID=Msa0384910-mRNA-1:exon:23757;Parent=Msa0384910-mRNA-1
chr3_1 CDS 88330656 88331163 88330656 ID=Msa0384910-mRNA-1:cds;Parent=Msa0384910-mRNA-1
chr3_1 CDS 88329729 88330099 88329729 ID=Msa0384910-mRNA-1:cds;Parent=Msa0384910-mRNA-1
Gene Sequence

>Msa0384910

ATGGCTGGGTTATTTTGTCTAGGTAGAAAGGAAGATCAAAAAGAAGATAAATTAGATTATTTTAGTAATAAAGAATTATTGTTAAGAAACGAGGAGATCTATAACAACAAAGGGTTAGAGATATGGCCACAACAAAGCTTGAACATTTACAATGCGTTTGGAGCGGGTCATAGTAGTAGTAGCAGAAATTCTTCGTTTGATGAGTGTGAAAGAAGATTTGGTATAATGAGGCGTAGTGGAGGAATGAATTGTCAGGACTGTGGTAATCAAGCAAAGAAAGATTGTATACATCTAAGATGCAGAACTTGTTGTAAGAGTCGAGGGTTTCAGTGTCAAACACATGTTAAGAGTACTTGGGTTCCAGCTGCTAAACGCCGTGAACGACAACAACATCTCTCTGCGTTACCGTTTCGTCGTCGAGATCATGGAGACAATTACAAACGACACACAGAAATTAATCAAGGTGCTACCTCTCTTCCTTGCCCTCAACCACCCATCCCTACCACAGGGTTGGAGTTGGGACAATTCCCACCAGAGGTGAGTTCTCCAGGAGTAACCTTTCGGTGTGTGAGAGTGAGTTCATTGGACGGTCCAGATCATGTTCAATGCGCGTATCAAACGGCTGTGAACATAGGAGGGCATGTTTTCAAAGGAATTCTCTATGATCAAGGTCCTCCAAATCTTTACACCAGTATTGCACCTATTGAAGGTTCTTCTGGTGGAGGTCATCATCAACCTCAACAACTTGATTTCATGACTGCAACAGCAACTACAGCTACAACCAGCGGTATCCCATTCGACCCTTCCCTTTACTCAGCTCCGCTCAATGCTTTCATGGCAGCTGGTACACAATTTTTCCACCCCCAACATCCTAATTAA

Protein sequence

>Msa0384910

MAGLFCLGRKEDQKEDKLDYFSNKELLLRNEEIYNNKGLEIWPQQSLNIYNAFGAGHSSSSRNSSFDECERRFGIMRRSGGMNCQDCGNQAKKDCIHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQHLSALPFRRRDHGDNYKRHTEINQGATSLPCPQPPIPTTGLELGQFPPEVSSPGVTFRCVRVSSLDGPDHVQCAYQTAVNIGGHVFKGILYDQGPPNLYTSIAPIEGSSGGGHHQPQQLDFMTATATTATTSGIPFDPSLYSAPLNAFMAAGTQFFHPQHPN*